Carg22207 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22207
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Nuclear transcription factor Y subunit C
Location	Cucurbita_argyrosperma_scaffold_174 : 62675 .. 63067 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGCAAGCAGGAGCATATTCCGGCGTGACGTACTGGAAAACAGGGCCGCACTCGCTGCCGTTAGCGAGAATCAAGAAGATCATGAAGAAATCCGGCGAGGATGTGAAGATGATCTCCGCCGAGGCGCCGATCGTCTTCTCGAAAGCGTGTGAACTGTTCGTCGAAGAATTGACGAAGAGATCGTGGATGATTGCGATGCAGAGCAAGAAGAGGATGCTTCACAAAGAGGATGTCGCTTCCGCCATTTTGGCTACAGATATTTTCGATTTTCTAATCGGATTGATCTTCCATGAAACCACCACCGCCGCTTCCGCTTCCGCCGCCGCCGAGCTTCCTGAAAGTGAAACTATGTCCATTCCCGTGGAGATGAGCCCGTTCTTGCAGTCCTGA

mRNA sequence

ATGAGGCAAGCAGGAGCATATTCCGGCGTGACGTACTGGAAAACAGGGCCGCACTCGCTGCCGTTAGCGAGAATCAAGAAGATCATGAAGAAATCCGGCGAGGATGTGAAGATGATCTCCGCCGAGGCGCCGATCGTCTTCTCGAAAGCGTGTGAACTGTTCGTCGAAGAATTGACGAAGAGATCGTGGATGATTGCGATGCAGAGCAAGAAGAGGATGCTTCACAAAGAGGATGTCGCTTCCGCCATTTTGGCTACAGATATTTTCGATTTTCTAATCGGATTGATCTTCCATGAAACCACCACCGCCGCTTCCGCTTCCGCCGCCGCCGAGCTTCCTGAAAGTGAAACTATGTCCATTCCCGTGGAGATGAGCCCGTTCTTGCAGTCCTGA

Coding sequence (CDS)

ATGAGGCAAGCAGGAGCATATTCCGGCGTGACGTACTGGAAAACAGGGCCGCACTCGCTGCCGTTAGCGAGAATCAAGAAGATCATGAAGAAATCCGGCGAGGATGTGAAGATGATCTCCGCCGAGGCGCCGATCGTCTTCTCGAAAGCGTGTGAACTGTTCGTCGAAGAATTGACGAAGAGATCGTGGATGATTGCGATGCAGAGCAAGAAGAGGATGCTTCACAAAGAGGATGTCGCTTCCGCCATTTTGGCTACAGATATTTTCGATTTTCTAATCGGATTGATCTTCCATGAAACCACCACCGCCGCTTCCGCTTCCGCCGCCGCCGAGCTTCCTGAAAGTGAAACTATGTCCATTCCCGTGGAGATGAGCCCGTTCTTGCAGTCCTGA

Protein sequence

MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHETTTAASASAAAELPESETMSIPVEMSPFLQS

Homology

[Close]

BLAST of Carg22207 vs. NCBI nr
Match: XP_022931515.1 (nuclear transcription factor Y subunit C-4-like [Cucurbita moschata])

HSP 1 Score: 251.1 bits (640), Expect = 2.0e-63
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTK 60
           MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTK
Sbjct: 1   MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTK 60

Query: 61  RSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHETTTAASASAAAELPESETMSI 120
           RSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHETTTAASASAAAELPESETMSI
Sbjct: 61  RSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHETTTAASASAAAELPESETMSI 120

Query: 121 PVEMSPFLQS 131
           PVEMSPFLQS
Sbjct: 121 PVEMSPFLQS 130

[Close]

BLAST of Carg22207 vs. NCBI nr
Match: XP_022985461.1 (nuclear transcription factor Y subunit C-4-like [Cucurbita maxima])

HSP 1 Score: 238.4 bits (607), Expect = 1.3e-59
Identity = 124/132 (93.94%), Postives = 128/132 (96.97%), Query Frame = 0


Query: 1   MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTK 60
           MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELF+EELTK
Sbjct: 1   MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFIEELTK 60

Query: 61  RSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHETTTAASASAAA--ELPESETM 120
           RSWMIAM SKKRMLHKEDVASAILATDIFDFLIGLIFHETTTAASASA+A  +LPESETM
Sbjct: 61  RSWMIAMHSKKRMLHKEDVASAILATDIFDFLIGLIFHETTTAASASASAAGDLPESETM 120

Query: 121 SIPVEMSPFLQS 131
           SIP+EM PFLQS
Sbjct: 121 SIPLEMRPFLQS 132

[Close]

BLAST of Carg22207 vs. NCBI nr
Match: XP_023552994.1 (nuclear transcription factor Y subunit C-4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 235.0 bits (598), Expect = 1.5e-58
Identity = 123/130 (94.62%), Postives = 125/130 (96.15%), Query Frame = 0


Query: 1   MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTK 60
           MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELF+EELTK
Sbjct: 1   MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFIEELTK 60

Query: 61  RSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHETTTAASASAAAELPESETMSI 120
           RSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHETTT A ASAA +L ESETMSI
Sbjct: 61  RSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHETTTPA-ASAAGDLAESETMSI 120

Query: 121 PVEMSPFLQS 131
           PVEM PFLQS
Sbjct: 121 PVEMRPFLQS 129

[Close]

BLAST of Carg22207 vs. NCBI nr
Match: XP_004146566.1 (PREDICTED: nuclear transcription factor Y subunit C-3-like [Cucumis sativus] >KGN53346.1 hypothetical protein Csa_4G049050 [Cucumis sativus])

HSP 1 Score: 200.3 bits (508), Expect = 4.1e-48
Identity = 103/120 (85.83%), Postives = 110/120 (91.67%), Query Frame = 0


Query: 1   MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTK 60
           MRQAGAYSGV YWKTGPHSLPLARIKKIMKKSGE+VKMIS EAPIVFSKACELF+EELTK
Sbjct: 1   MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTK 60

Query: 61  RSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHETTTAASASAAAELPESETMSI 120
           RSWMIAMQSKKRMLHKEDVASAILATD+FDFLIGLIF+ET T A   A  +L ESET+S+
Sbjct: 61  RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETATPA---ATGDLGESETISV 117

[Close]

BLAST of Carg22207 vs. NCBI nr
Match: XP_022136847.1 (nuclear transcription factor Y subunit C-1-like [Momordica charantia])

HSP 1 Score: 199.5 bits (506), Expect = 6.9e-48
Identity = 101/125 (80.80%), Postives = 111/125 (88.80%), Query Frame = 0


Query: 1   MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTK 60
           MRQAGAYSGV YWKTGPHSLPLARIKKIMKKSGEDVKMIS EAPIVFSKACELF+EELT+
Sbjct: 1   MRQAGAYSGVLYWKTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTR 60

Query: 61  RSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHETTTAASASAAAELPESETMSI 120
           RSWM+AMQSKKRMLHKEDVASAILATD+FDFLIGLIFHE        +A E+ +  T+S+
Sbjct: 61  RSWMVAMQSKKRMLHKEDVASAILATDLFDFLIGLIFHE--------SAGEIADETTVSM 117

Query: 121 PVEMS 126
           P+EMS
Sbjct: 121 PMEMS 117

[Close]

BLAST of Carg22207 vs. TAIR10
Match: AT5G63470.1 (nuclear factor Y, subunit C4)

HSP 1 Score: 104.8 bits (260), Expect = 4.2e-23
Identity = 53/82 (64.63%), Postives = 67/82 (81.71%), Query Frame = 0


Query: 18  HSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKE 77
           H LPLARIKKIM K+ EDV+MISAEAPI+F+KACELF+ ELT RSW+ A ++K+R L K 
Sbjct: 77  HQLPLARIKKIM-KADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKN 136

Query: 78  DVASAILATDIFDFLIGLIFHE 100
           D+A+AI  TDIFDFL+ ++  E
Sbjct: 137 DIAAAITRTDIFDFLVDIVPRE 157

[Close]

BLAST of Carg22207 vs. TAIR10
Match: AT3G48590.1 (nuclear factor Y, subunit C1)

HSP 1 Score: 104.0 bits (258), Expect = 7.2e-23
Identity = 52/79 (65.82%), Postives = 66/79 (83.54%), Query Frame = 0


Query: 18  HSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKE 77
           H LPLARIKKIM K+ EDV+MISAEAPI+F+KACELF+ ELT RSW+ A ++K+R L K 
Sbjct: 64  HQLPLARIKKIM-KADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKN 123

Query: 78  DVASAILATDIFDFLIGLI 97
           D+A+AI  TDIFDFL+ ++
Sbjct: 124 DIAAAITRTDIFDFLVDIV 141

[Close]

BLAST of Carg22207 vs. TAIR10
Match: AT1G56170.1 (nuclear factor Y, subunit C2)

HSP 1 Score: 100.9 bits (250), Expect = 6.1e-22
Identity = 48/79 (60.76%), Postives = 66/79 (83.54%), Query Frame = 0


Query: 18  HSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKE 77
           H+LPLARIKKIM K+ EDV+MISAEAP++F+KACE+F+ ELT R+W+   ++K+R L K 
Sbjct: 75  HTLPLARIKKIM-KADEDVRMISAEAPVIFAKACEMFILELTLRAWIHTEENKRRTLQKN 134

Query: 78  DVASAILATDIFDFLIGLI 97
           D+A+AI  TD+FDFL+ +I
Sbjct: 135 DIAAAISRTDVFDFLVDII 152

[Close]

BLAST of Carg22207 vs. TAIR10
Match: AT1G54830.2 (nuclear factor Y, subunit C3)

HSP 1 Score: 100.9 bits (250), Expect = 6.1e-22
Identity = 55/103 (53.40%), Postives = 72/103 (69.90%), Query Frame = 0


Query: 18  HSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKE 77
           HSLPLARIKKIM K+ EDV+MISAEAP+VF++ACE+F+ ELT RSW    ++K+R L K 
Sbjct: 69  HSLPLARIKKIM-KADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKN 128

Query: 78  DVASAILATDIFDFLIGLIFHETT-------TAASASAAAELP 114
           D+A+A+  TDIFDFL+ ++  E           A A+ AA  P
Sbjct: 129 DIAAAVTRTDIFDFLVDIVPREDLRDEVLGGVGAEAATAAGYP 170

[Close]

BLAST of Carg22207 vs. TAIR10
Match: AT1G08970.4 (nuclear factor Y, subunit C9)

HSP 1 Score: 99.8 bits (247), Expect = 1.4e-21
Identity = 49/76 (64.47%), Postives = 63/76 (82.89%), Query Frame = 0


Query: 18  HSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKE 77
           HSLPLARIKKIM K+ EDV+MISAEAP+VF++ACE+F+ ELT RSW    ++K+R L K 
Sbjct: 79  HSLPLARIKKIM-KADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKN 138

Query: 78  DVASAILATDIFDFLI 94
           D+A+A+  TDIFDFL+
Sbjct: 139 DIAAAVTRTDIFDFLV 153

[Close]

BLAST of Carg22207 vs. Swiss-Prot
Match: sp|Q9FMV5|NFYC4_ARATH (Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana OX=3702 GN=NFYC4 PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 7.6e-22
Identity = 53/82 (64.63%), Postives = 67/82 (81.71%), Query Frame = 0


Query: 18  HSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKE 77
           H LPLARIKKIM K+ EDV+MISAEAPI+F+KACELF+ ELT RSW+ A ++K+R L K 
Sbjct: 77  HQLPLARIKKIM-KADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKN 136

Query: 78  DVASAILATDIFDFLIGLIFHE 100
           D+A+AI  TDIFDFL+ ++  E
Sbjct: 137 DIAAAITRTDIFDFLVDIVPRE 157

[Close]

BLAST of Carg22207 vs. Swiss-Prot
Match: sp|Q9SMP0|NFYC1_ARATH (Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana OX=3702 GN=NFYC1 PE=1 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.3e-21
Identity = 52/79 (65.82%), Postives = 66/79 (83.54%), Query Frame = 0


Query: 18  HSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKE 77
           H LPLARIKKIM K+ EDV+MISAEAPI+F+KACELF+ ELT RSW+ A ++K+R L K 
Sbjct: 64  HQLPLARIKKIM-KADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKN 123

Query: 78  DVASAILATDIFDFLIGLI 97
           D+A+AI  TDIFDFL+ ++
Sbjct: 124 DIAAAITRTDIFDFLVDIV 141

[Close]

BLAST of Carg22207 vs. Swiss-Prot
Match: sp|A6BLW4|NFYC2_ORYSJ (Nuclear transcription factor Y subunit C-2 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYC2 PE=1 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.2e-21
Identity = 53/91 (58.24%), Postives = 69/91 (75.82%), Query Frame = 0


Query: 18  HSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKE 77
           H LPLARIKKIM K+ EDV+MISAEAP++F+KACELF+ ELT RSW+ A ++K+R L + 
Sbjct: 68  HQLPLARIKKIM-KADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQRN 127

Query: 78  DVASAILATDIFDFLIGLIFHETTTAASASA 109
           DVA+AI  TD+FDFL+ ++  E       SA
Sbjct: 128 DVAAAIARTDVFDFLVDIVPREEAKEEPGSA 157

[Close]

BLAST of Carg22207 vs. Swiss-Prot
Match: sp|Q655V5|NFYC4_ORYSJ (Nuclear transcription factor Y subunit C-4 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYC4 PE=1 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.9e-21
Identity = 49/79 (62.03%), Postives = 66/79 (83.54%), Query Frame = 0


Query: 18  HSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKE 77
           HSLPLARIKKIM K+ EDV+MISAEAP++F+KACE+F+ ELT RSWM   ++K+R L K 
Sbjct: 100 HSLPLARIKKIM-KADEDVRMISAEAPVIFAKACEIFILELTLRSWMHTEENKRRTLQKN 159

Query: 78  DVASAILATDIFDFLIGLI 97
           D+A+AI  TD++DFL+ ++
Sbjct: 160 DIAAAITRTDMYDFLVDIV 177

[Close]

BLAST of Carg22207 vs. Swiss-Prot
Match: sp|Q9XE33|NFYC6_ORYSJ (Nuclear transcription factor Y subunit C-6 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYC6 PE=1 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 8.4e-21
Identity = 50/92 (54.35%), Postives = 71/92 (77.17%), Query Frame = 0


Query: 18  HSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTKRSWMIAMQSKKRMLHKE 77
           H+LPLARIKKIM K+ EDV+MI+AEAP+VF++ACE+F+ ELT R W  A ++K+R L K 
Sbjct: 89  HNLPLARIKKIM-KADEDVRMIAAEAPVVFARACEMFILELTHRGWAHAEENKRRTLQKS 148

Query: 78  DVASAILATDIFDFLIGLIFHETTTAASASAA 110
           D+A+AI  T++FDFL+ ++  +    A A+AA
Sbjct: 149 DIAAAIARTEVFDFLVDIVPRDEAKDAEAAAA 179

[Close]

BLAST of Carg22207 vs. TrEMBL
Match: tr|A0A0A0KZN6|A0A0A0KZN6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G049050 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 2.7e-48
Identity = 103/120 (85.83%), Postives = 110/120 (91.67%), Query Frame = 0


Query: 1   MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTK 60
           MRQAGAYSGV YWKTGPHSLPLARIKKIMKKSGE+VKMIS EAPIVFSKACELF+EELTK
Sbjct: 1   MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTK 60

Query: 61  RSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHETTTAASASAAAELPESETMSI 120
           RSWMIAMQSKKRMLHKEDVASAILATD+FDFLIGLIF+ET T A   A  +L ESET+S+
Sbjct: 61  RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETATPA---ATGDLGESETISV 117

[Close]

BLAST of Carg22207 vs. TrEMBL
Match: tr|A0A1S3BSA0|A0A1S3BSA0_CUCME (nuclear transcription factor Y subunit C-1-like OS=Cucumis melo OX=3656 GN=LOC103493153 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 6.6e-47
Identity = 100/120 (83.33%), Postives = 109/120 (90.83%), Query Frame = 0


Query: 1   MRQAGAYSGVTYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVEELTK 60
           MRQAGAYSGV YWKTGPHSLPLARIKKIMKKSGE+VKMIS EAPIVFSKACELF+EELTK
Sbjct: 1   MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTK 60

Query: 61  RSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHETTTAASASAAAELPESETMSI 120
           RSWMIAMQSKKRMLHKEDVASAILATD+FDFLIGLIF+ET     A+ A ++ ESE +S+
Sbjct: 61  RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET-----AATAGDVGESENISV 115

[Close]

BLAST of Carg22207 vs. TrEMBL
Match: tr|B9RC88|B9RC88_RICCO (Ccaat-binding transcription factor, putative OS=Ricinus communis OX=3988 GN=RCOM_1686190 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 9.9e-35
Identity = 76/100 (76.00%), Postives = 87/100 (87.00%), Query Frame = 0


Query: 1   MRQAGAYSGV----TYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVE 60
           MRQAG YSG+       +TGPHSLPLARIKKIMKKSGEDVKMIS EAPIVFSKACELF++
Sbjct: 1   MRQAGIYSGILCGGLSGRTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIQ 60

Query: 61  ELTKRSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLI 97
           ELTKRSWM+ MQ K++ LHKEDVASA++ATDIFDFL+ L+
Sbjct: 61  ELTKRSWMVTMQGKRKTLHKEDVASAVIATDIFDFLVNLV 100

[Close]

BLAST of Carg22207 vs. TrEMBL
Match: tr|B9GWG1|B9GWG1_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_003G124500v3 PE=4 SV=2)

HSP 1 Score: 154.1 bits (388), Expect = 2.2e-34
Identity = 77/100 (77.00%), Postives = 86/100 (86.00%), Query Frame = 0


Query: 1   MRQAGAYSGV----TYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVE 60
           MRQAG YSG+       KTGPHSLPLARIKKIMKKSG+DVKMIS EAPIVFSKACELF+E
Sbjct: 1   MRQAGTYSGILSGGLSGKTGPHSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIE 60

Query: 61  ELTKRSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLI 97
           ELT+RSWMI +Q K+R LHKEDVASA+ ATDIFDFL+ L+
Sbjct: 61  ELTQRSWMITIQGKRRTLHKEDVASAVTATDIFDFLVNLV 100

[Close]

BLAST of Carg22207 vs. TrEMBL
Match: tr|A0A067K0Y6|A0A067K0Y6_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_20620 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 3.8e-34
Identity = 77/111 (69.37%), Postives = 93/111 (83.78%), Query Frame = 0


Query: 1   MRQAGAYSGV----TYWKTGPHSLPLARIKKIMKKSGEDVKMISAEAPIVFSKACELFVE 60
           MRQAG YSG+       +TGPHSLPLARIKKIMKKSG+DVKMIS EAPIVFSKACELF++
Sbjct: 1   MRQAGTYSGLLCGGLSGRTGPHSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIK 60

Query: 61  ELTKRSWMIAMQSKKRMLHKEDVASAILATDIFDFLIGLIFHETTTAASAS 108
           ELT+RSWM+ MQ K+R LHKEDVASA++ATDIFDFL+ L+ +  +T  ++S
Sbjct: 61  ELTQRSWMVTMQGKRRTLHKEDVASAVIATDIFDFLVNLVDNNHSTNNNSS 111

The following BLAST results are available for this feature:

BLAST of Carg22207 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022931515.1	2.0e-63	100.00	nuclear transcription factor Y subunit C-4-like [Cucurbita moschata]	[more]
XP_022985461.1	1.3e-59	93.94	nuclear transcription factor Y subunit C-4-like [Cucurbita maxima]	[more]
XP_023552994.1	1.5e-58	94.62	nuclear transcription factor Y subunit C-4-like [Cucurbita pepo subsp. pepo]	[more]
XP_004146566.1	4.1e-48	85.83	PREDICTED: nuclear transcription factor Y subunit C-3-like [Cucumis sativus] >KG...	[more]
XP_022136847.1	6.9e-48	80.80	nuclear transcription factor Y subunit C-1-like [Momordica charantia]	[more]

BLAST of Carg22207 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G63470.1	4.2e-23	64.63	nuclear factor Y, subunit C4	[more]
AT3G48590.1	7.2e-23	65.82	nuclear factor Y, subunit C1	[more]
AT1G56170.1	6.1e-22	60.76	nuclear factor Y, subunit C2	[more]
AT1G54830.2	6.1e-22	53.40	nuclear factor Y, subunit C3	[more]
AT1G08970.4	1.4e-21	64.47	nuclear factor Y, subunit C9	[more]

BLAST of Carg22207 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FMV5\|NFYC4_ARATH	7.6e-22	64.63	Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
sp\|Q9SMP0\|NFYC1_ARATH	1.3e-21	65.82	Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
sp\|A6BLW4\|NFYC2_ORYSJ	2.2e-21	58.24	Nuclear transcription factor Y subunit C-2 OS=Oryza sativa subsp. japonica OX=39...	[more]
sp\|Q655V5\|NFYC4_ORYSJ	2.9e-21	62.03	Nuclear transcription factor Y subunit C-4 OS=Oryza sativa subsp. japonica OX=39...	[more]
sp\|Q9XE33\|NFYC6_ORYSJ	8.4e-21	54.35	Nuclear transcription factor Y subunit C-6 OS=Oryza sativa subsp. japonica OX=39...	[more]

BLAST of Carg22207 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KZN6\|A0A0A0KZN6_CUCSA	2.7e-48	85.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G049050 PE=4 SV=1	[more]
tr\|A0A1S3BSA0\|A0A1S3BSA0_CUCME	6.6e-47	83.33	nuclear transcription factor Y subunit C-1-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|B9RC88\|B9RC88_RICCO	9.9e-35	76.00	Ccaat-binding transcription factor, putative OS=Ricinus communis OX=3988 GN=RCOM...	[more]
tr\|B9GWG1\|B9GWG1_POPTR	2.2e-34	77.00	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_003G124500v3 PE=...	[more]
tr\|A0A067K0Y6\|A0A067K0Y6_JATCU	3.8e-34	69.37	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_20620 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046982	protein heterodimerization activity

Vocabulary: **INTERPRO**
Term	Definition
IPR009072	Histone-fold
IPR003958	CBFA_NFYB_domain

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046982	protein heterodimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22207-RA	Carg22207-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 19..83 e-value: 2.0E-20 score: 72.7
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 8..96 e-value: 5.6E-30 score: 105.9
IPR009072	Histone-fold	SUPERFAMILY	SSF47113	Histone-fold	coord: 15..92
None	No IPR available	PANTHER	PTHR10252:SF41	SUBFAMILY NOT NAMED	coord: 1..106
None	No IPR available	PANTHER	PTHR10252	HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED	coord: 1..106

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22207	Cla014640	Watermelon (97103) v1	carwmB0588
Carg22207	Csa4G049050	Cucumber (Chinese Long) v2	carcuB0617
Carg22207	MELO3C016347	Melon (DHL92) v3.5.1	carmeB0596
Carg22207	ClCG07G008020	Watermelon (Charleston Gray)	carwcgB0577
Carg22207	CSPI04G05850	Wild cucumber (PI 183967)	carcpiB0623
Carg22207	Cucsa.106870	Cucumber (Gy14) v1	carcgyB0663
Carg22207	Lsi07G008950	Bottle gourd (USVL1VR-Ls)	carlsiB535
Carg22207	Cp4.1LG14g02160	Cucurbita pepo (Zucchini)	carcpeB0838
Carg22207	MELO3C016347.2	Melon (DHL92) v3.6.1	carmedB0603
Carg22207	CsaV3_4G006020	Cucumber (Chinese Long) v3	carcucB0624
Carg22207	Cla97C07G135160	Watermelon (97103) v2	carwmbB0618
Carg22207	Bhi01G001796	Wax gourd	carwgoB0702

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22207	Silver-seed gourd	carcarB535
Carg22207	Cucumber (Gy14) v2	carcgybB0589
Carg22207	Cucurbita maxima (Rimu)	carcmaB0825
Carg22207	Cucurbita maxima (Rimu)	carcmaB0826
Carg22207	Cucurbita moschata (Rifu)	carcmoB0804
Carg22207	Cucurbita moschata (Rifu)	carcmoB0803
Carg22207	Cucurbita pepo (Zucchini)	carcpeB0839