Lsi07G006200 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi07G006200
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Alpha/beta-Hydrolases superfamily protein, putative
Location	chr07 : 6661680 .. 6661928 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGGTACGTGGCATATCGGATGGCTGAGATTTATGAGGAAGTGATTGTGAGCTGTGGAATATGTAGTAGAAAAGGTGGAGCAGCTTAAGAAGATAGGAAGGGATGCAGTGGATCTTCTTGTACCAGAAACACCACAACATTTGAAGATTCTTATGAAGTTGTCTATGTATAAATATGATCCAAGTTGGTGGCCAGATTGCATGGCTAAAGAATTTCTAATTCTATTCTATTCTAACTCTCGATGA

mRNA sequence

ATGGAGGTAGAAAAGGTGGAGCAGCTTAAGAAGATAGGAAGGGATGCAGTGGATCTTCTTGTACCAGAAACACCACAACATTTGAAGATTCTTATGAAGTTGTCTATGTATAAATATGATCCAAGTTGGTGGCCAGATTGCATGGCTAAAGAATTTCTAATTCTATTCTATTCTAACTCTCGATGA

Coding sequence (CDS)

ATGGAGGTAGAAAAGGTGGAGCAGCTTAAGAAGATAGGAAGGGATGCAGTGGATCTTCTTGTACCAGAAACACCACAACATTTGAAGATTCTTATGAAGTTGTCTATGTATAAATATGATCCAAGTTGGTGGCCAGATTGCATGGCTAAAGAATTTCTAATTCTATTCTATTCTAACTCTCGATGA

Protein sequence

MEVEKVEQLKKIGRDAVDLLVPETPQHLKILMKLSMYKYDPSWWPDCMAKEFLILFYSNSR

Homology

[Close]

BLAST of Lsi07G006200 vs. TrEMBL
Match: A0A166EPC2_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_007647 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.3e-07
Identity = 28/56 (50.00%), Postives = 43/56 (76.79%), Query Frame = 1


Query: 7   EQLKKIGRDAVDLLVPETPQHLKILMKLSMYKYDP-SWWPDCMAKEFLILFYSNSR 62
           EQ+KKIGR+AVDLL+P+ PQ L++LM L++Y +DP  W P+CM  +F+ +  ++ R
Sbjct: 184 EQVKKIGRNAVDLLLPQKPQDLRLLMDLAIYTFDPFKWLPNCMLNDFIRMTCNDHR 239

[Close]

BLAST of Lsi07G006200 vs. TrEMBL
Match: M1B3M3_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400014029 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 8.4e-07
Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = 1


Query: 4   EKVEQLKKIGRDAVDLLVPETPQHLKILMKLSMYKYDP-SWWPDCMAKEFL 54
           +K EQLKKIGRD V+LL+P  P+ L +L+ LS+YKY+P  W PD   +EF+
Sbjct: 91  QKEEQLKKIGRDPVELLIPAKPEDLHVLVNLSIYKYNPFKWAPDYFLQEFI 141

[Close]

BLAST of Lsi07G006200 vs. TrEMBL
Match: M1B3M4_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400014029 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 8.4e-07
Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = 1


Query: 4   EKVEQLKKIGRDAVDLLVPETPQHLKILMKLSMYKYDP-SWWPDCMAKEFL 54
           +K EQLKKIGRD V+LL+P  P+ L +L+ LS+YKY+P  W PD   +EF+
Sbjct: 189 QKEEQLKKIGRDPVELLIPAKPEDLHVLVNLSIYKYNPFKWAPDYFLQEFI 239

[Close]

BLAST of Lsi07G006200 vs. TrEMBL
Match: A0A0V0HYB8_SOLCH (Putative epoxide hydrolase 4-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 8.4e-07
Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = 1


Query: 4   EKVEQLKKIGRDAVDLLVPETPQHLKILMKLSMYKYDP-SWWPDCMAKEFL 54
           +K EQLKKIGRD V+LL+P  P+ L +L+ LS+YKY+P  W PD   +EF+
Sbjct: 91  QKEEQLKKIGRDPVELLIPAKPEDLHVLVNLSIYKYNPFKWAPDYFLQEFI 141

[Close]

BLAST of Lsi07G006200 vs. TrEMBL
Match: K4BN38_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.9e-06
Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = 1


Query: 4   EKVEQLKKIGRDAVDLLVPETPQHLKILMKLSMYKYDP-SWWPDCMAKEFL 54
           +K EQLKKIGRD V+LL+PE P+ L +L+ LS+YKY+   W PD   +EF+
Sbjct: 224 QKEEQLKKIGRDPVELLIPEKPEDLHVLVNLSIYKYNHFKWAPDYFLQEFI 274

[Close]

BLAST of Lsi07G006200 vs. NCBI nr
Match: gi|1021049030|gb|KZN06810.1| (hypothetical protein DCAR_007647 [Daucus carota subsp. sativus])

HSP 1 Score: 63.2 bits (152), Expect = 1.9e-07
Identity = 28/56 (50.00%), Postives = 43/56 (76.79%), Query Frame = 1


Query: 7   EQLKKIGRDAVDLLVPETPQHLKILMKLSMYKYDP-SWWPDCMAKEFLILFYSNSR 62
           EQ+KKIGR+AVDLL+P+ PQ L++LM L++Y +DP  W P+CM  +F+ +  ++ R
Sbjct: 184 EQVKKIGRNAVDLLLPQKPQDLRLLMDLAIYTFDPFKWLPNCMLNDFIRMTCNDHR 239

[Close]

BLAST of Lsi07G006200 vs. NCBI nr
Match: gi|697182059|ref|XP_009600030.1| (PREDICTED: epoxide hydrolase 4 [Nicotiana tomentosiformis])

HSP 1 Score: 60.8 bits (146), Expect = 9.3e-07
Identity = 28/53 (52.83%), Postives = 39/53 (73.58%), Query Frame = 1


Query: 4   EKVEQLKKIGRDAVDLLVPETPQHLKILMKLSMYKYDP-SWWPDCMAKEFLIL 56
           +K EQLKKIGRD V+LL+P  P+ L +L+ +S+YKY+P  W PD   +EF+ L
Sbjct: 189 QKEEQLKKIGRDPVELLIPAKPEDLHVLVNMSIYKYNPFKWAPDAFLQEFIDL 241

[Close]

BLAST of Lsi07G006200 vs. NCBI nr
Match: gi|565351964|ref|XP_006342917.1| (PREDICTED: 2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrolase [Solanum tuberosum])

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-06
Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = 1


Query: 4   EKVEQLKKIGRDAVDLLVPETPQHLKILMKLSMYKYDP-SWWPDCMAKEFL 54
           +K EQLKKIGRD V+LL+P  P+ L +L+ LS+YKY+P  W PD   +EF+
Sbjct: 189 QKEEQLKKIGRDPVELLIPAKPEDLHVLVNLSIYKYNPFKWAPDYFLQEFI 239

[Close]

BLAST of Lsi07G006200 vs. NCBI nr
Match: gi|970017428|ref|XP_015069848.1| (PREDICTED: 2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrolase [Solanum pennellii])

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-06
Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = 1


Query: 4   EKVEQLKKIGRDAVDLLVPETPQHLKILMKLSMYKYDP-SWWPDCMAKEFL 54
           +K EQLKKIGRD V+LL+P  P+ L +L+ LS+YKY+P  W PD   +EF+
Sbjct: 189 QKEEQLKKIGRDPVELLIPAKPEDLHVLVNLSIYKYNPFKWAPDYFLQEFI 239

[Close]

BLAST of Lsi07G006200 vs. NCBI nr
Match: gi|698499489|ref|XP_009795564.1| (PREDICTED: epoxide hydrolase 4-like [Nicotiana sylvestris])

HSP 1 Score: 59.3 bits (142), Expect = 2.7e-06
Identity = 26/51 (50.98%), Postives = 38/51 (74.51%), Query Frame = 1


Query: 4   EKVEQLKKIGRDAVDLLVPETPQHLKILMKLSMYKYDP-SWWPDCMAKEFL 54
           +K EQLK+IGRD V+LL+P  P+ L +L+ +S+YKY+P  W PD   +EF+
Sbjct: 189 QKEEQLKRIGRDPVELLIPAKPEDLHVLVNMSIYKYNPFKWAPDAFLQEFI 239

The following BLAST results are available for this feature:

BLAST of Lsi07G006200 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi07G006200 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A166EPC2_DAUCA	1.3e-07	50.00	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_007647 PE=4 SV=1	[more]
M1B3M3_SOLTU	8.4e-07	54.90	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400014029 PE=4 SV=1	[more]
M1B3M4_SOLTU	8.4e-07	54.90	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400014029 PE=4 SV=1	[more]
A0A0V0HYB8_SOLCH	8.4e-07	54.90	Putative epoxide hydrolase 4-like OS=Solanum chacoense PE=4 SV=1	[more]
K4BN38_SOLLC	1.9e-06	54.90	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]

BLAST of Lsi07G006200 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi07G006200 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|1021049030\|gb\|KZN06810.1\|	1.9e-07	50.00	hypothetical protein DCAR_007647 [Daucus carota subsp. sativus]	[more]
gi\|697182059\|ref\|XP_009600030.1\|	9.3e-07	52.83	PREDICTED: epoxide hydrolase 4 [Nicotiana tomentosiformis]	[more]
gi\|565351964\|ref\|XP_006342917.1\|	1.2e-06	54.90	PREDICTED: 2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrol...	[more]
gi\|970017428\|ref\|XP_015069848.1\|	1.2e-06	54.90	PREDICTED: 2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrol...	[more]
gi\|698499489\|ref\|XP_009795564.1\|	2.7e-06	50.98	PREDICTED: epoxide hydrolase 4-like [Nicotiana sylvestris]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003824	catalytic activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G006200.1	Lsi07G006200.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi07G006200	Cla012577	Watermelon (97103) v1	lsiwmB438
Lsi07G006200	Cla97C07G140880	Watermelon (97103) v2	lsiwmbB405
Lsi07G006200	Bhi01G002188	Wax gourd	lsiwgoB544

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi07G006200	Melon (DHL92) v3.5.1	lsimeB432
Lsi07G006200	Melon (DHL92) v3.5.1	lsimeB436
Lsi07G006200	Watermelon (Charleston Gray)	lsiwcgB386
Lsi07G006200	Watermelon (Charleston Gray)	lsiwcgB406
Lsi07G006200	Watermelon (97103) v1	lsiwmB425
Lsi07G006200	Cucumber (Gy14) v2	cgyblsiB220
Lsi07G006200	Cucumber (Gy14) v2	cgyblsiB504
Lsi07G006200	Melon (DHL92) v3.6.1	lsimedB456
Lsi07G006200	Melon (DHL92) v3.6.1	lsimedB452
Lsi07G006200	Silver-seed gourd	carlsiB109
Lsi07G006200	Silver-seed gourd	carlsiB182
Lsi07G006200	Silver-seed gourd	carlsiB939
Lsi07G006200	Cucumber (Chinese Long) v3	cuclsiB253
Lsi07G006200	Cucumber (Chinese Long) v3	cuclsiB569
Lsi07G006200	Watermelon (97103) v2	lsiwmbB419
Lsi07G006200	Wax gourd	lsiwgoB579
Lsi07G006200	Bottle gourd (USVL1VR-Ls)	lsilsiB120
Lsi07G006200	Cucumber (Gy14) v1	cgylsiB327
Lsi07G006200	Cucumber (Gy14) v1	cgylsiB582
Lsi07G006200	Cucurbita maxima (Rimu)	cmalsiB256
Lsi07G006200	Cucurbita maxima (Rimu)	cmalsiB361
Lsi07G006200	Cucurbita maxima (Rimu)	cmalsiB450
Lsi07G006200	Cucurbita maxima (Rimu)	cmalsiB845
Lsi07G006200	Cucurbita moschata (Rifu)	cmolsiB244
Lsi07G006200	Cucurbita moschata (Rifu)	cmolsiB349
Lsi07G006200	Cucurbita moschata (Rifu)	cmolsiB437
Lsi07G006200	Cucurbita moschata (Rifu)	cmolsiB829
Lsi07G006200	Cucurbita pepo (Zucchini)	cpelsiB127
Lsi07G006200	Cucurbita pepo (Zucchini)	cpelsiB276
Lsi07G006200	Cucurbita pepo (Zucchini)	cpelsiB472
Lsi07G006200	Cucurbita pepo (Zucchini)	cpelsiB516
Lsi07G006200	Wild cucumber (PI 183967)	cpilsiB232
Lsi07G006200	Wild cucumber (PI 183967)	cpilsiB548
Lsi07G006200	Cucumber (Chinese Long) v2	culsiB233
Lsi07G006200	Cucumber (Chinese Long) v2	culsiB533