Lsi07G006200.1 (mRNA) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi07G006200.1
TypemRNA
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionAlpha/beta-Hydrolases superfamily protein, putative
Locationchr07 : 6661680 .. 6661928 (-)
Sequence length186
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGGTACGTGGCATATCGGATGGCTGAGATTTATGAGGAAGTGATTGTGAGCTGTGGAATATGTAGTAGAAAAGGTGGAGCAGCTTAAGAAGATAGGAAGGGATGCAGTGGATCTTCTTGTACCAGAAACACCACAACATTTGAAGATTCTTATGAAGTTGTCTATGTATAAATATGATCCAAGTTGGTGGCCAGATTGCATGGCTAAAGAATTTCTAATTCTATTCTATTCTAACTCTCGATGA

mRNA sequence

ATGGAGGTAGAAAAGGTGGAGCAGCTTAAGAAGATAGGAAGGGATGCAGTGGATCTTCTTGTACCAGAAACACCACAACATTTGAAGATTCTTATGAAGTTGTCTATGTATAAATATGATCCAAGTTGGTGGCCAGATTGCATGGCTAAAGAATTTCTAATTCTATTCTATTCTAACTCTCGATGA

Coding sequence (CDS)

ATGGAGGTAGAAAAGGTGGAGCAGCTTAAGAAGATAGGAAGGGATGCAGTGGATCTTCTTGTACCAGAAACACCACAACATTTGAAGATTCTTATGAAGTTGTCTATGTATAAATATGATCCAAGTTGGTGGCCAGATTGCATGGCTAAAGAATTTCTAATTCTATTCTATTCTAACTCTCGATGA

Protein sequence

MEVEKVEQLKKIGRDAVDLLVPETPQHLKILMKLSMYKYDPSWWPDCMAKEFLILFYSNSR
Homology
[Close]
BLAST of Lsi07G006200.1 vs. TrEMBL
Match: A0A166EPC2_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_007647 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.3e-07
Identity = 28/56 (50.00%), Postives = 43/56 (76.79%), Query Frame = 1 

Query: 7   EQLKKIGRDAVDLLVPETPQHLKILMKLSMYKYDP-SWWPDCMAKEFLILFYSNSR 62
           EQ+KKIGR+AVDLL+P+ PQ L++LM L++Y +DP  W P+CM  +F+ +  ++ R
Sbjct: 184 EQVKKIGRNAVDLLLPQKPQDLRLLMDLAIYTFDPFKWLPNCMLNDFIRMTCNDHR 239

[Close]
BLAST of Lsi07G006200.1 vs. TrEMBL
Match: M1B3M3_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400014029 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 8.4e-07
Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = 1 

Query: 4   EKVEQLKKIGRDAVDLLVPETPQHLKILMKLSMYKYDP-SWWPDCMAKEFL 54
           +K EQLKKIGRD V+LL+P  P+ L +L+ LS+YKY+P  W PD   +EF+
Sbjct: 91  QKEEQLKKIGRDPVELLIPAKPEDLHVLVNLSIYKYNPFKWAPDYFLQEFI 141

[Close]
BLAST of Lsi07G006200.1 vs. TrEMBL
Match: M1B3M4_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400014029 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 8.4e-07
Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = 1 

Query: 4   EKVEQLKKIGRDAVDLLVPETPQHLKILMKLSMYKYDP-SWWPDCMAKEFL 54
           +K EQLKKIGRD V+LL+P  P+ L +L+ LS+YKY+P  W PD   +EF+
Sbjct: 189 QKEEQLKKIGRDPVELLIPAKPEDLHVLVNLSIYKYNPFKWAPDYFLQEFI 239

[Close]
BLAST of Lsi07G006200.1 vs. TrEMBL
Match: A0A0V0HYB8_SOLCH (Putative epoxide hydrolase 4-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 8.4e-07
Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = 1 

Query: 4   EKVEQLKKIGRDAVDLLVPETPQHLKILMKLSMYKYDP-SWWPDCMAKEFL 54
           +K EQLKKIGRD V+LL+P  P+ L +L+ LS+YKY+P  W PD   +EF+
Sbjct: 91  QKEEQLKKIGRDPVELLIPAKPEDLHVLVNLSIYKYNPFKWAPDYFLQEFI 141

[Close]
BLAST of Lsi07G006200.1 vs. TrEMBL
Match: K4BN38_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.9e-06
Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = 1 

Query: 4   EKVEQLKKIGRDAVDLLVPETPQHLKILMKLSMYKYDP-SWWPDCMAKEFL 54
           +K EQLKKIGRD V+LL+PE P+ L +L+ LS+YKY+   W PD   +EF+
Sbjct: 224 QKEEQLKKIGRDPVELLIPEKPEDLHVLVNLSIYKYNHFKWAPDYFLQEFI 274

[Close]
BLAST of Lsi07G006200.1 vs. NCBI nr
Match: gi|1021049030|gb|KZN06810.1| (hypothetical protein DCAR_007647 [Daucus carota subsp. sativus])

HSP 1 Score: 63.2 bits (152), Expect = 1.9e-07
Identity = 28/56 (50.00%), Postives = 43/56 (76.79%), Query Frame = 1 

Query: 7   EQLKKIGRDAVDLLVPETPQHLKILMKLSMYKYDP-SWWPDCMAKEFLILFYSNSR 62
           EQ+KKIGR+AVDLL+P+ PQ L++LM L++Y +DP  W P+CM  +F+ +  ++ R
Sbjct: 184 EQVKKIGRNAVDLLLPQKPQDLRLLMDLAIYTFDPFKWLPNCMLNDFIRMTCNDHR 239

[Close]
BLAST of Lsi07G006200.1 vs. NCBI nr
Match: gi|697182059|ref|XP_009600030.1| (PREDICTED: epoxide hydrolase 4 [Nicotiana tomentosiformis])

HSP 1 Score: 60.8 bits (146), Expect = 9.3e-07
Identity = 28/53 (52.83%), Postives = 39/53 (73.58%), Query Frame = 1 

Query: 4   EKVEQLKKIGRDAVDLLVPETPQHLKILMKLSMYKYDP-SWWPDCMAKEFLIL 56
           +K EQLKKIGRD V+LL+P  P+ L +L+ +S+YKY+P  W PD   +EF+ L
Sbjct: 189 QKEEQLKKIGRDPVELLIPAKPEDLHVLVNMSIYKYNPFKWAPDAFLQEFIDL 241

[Close]
BLAST of Lsi07G006200.1 vs. NCBI nr
Match: gi|565351964|ref|XP_006342917.1| (PREDICTED: 2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrolase [Solanum tuberosum])

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-06
Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = 1 

Query: 4   EKVEQLKKIGRDAVDLLVPETPQHLKILMKLSMYKYDP-SWWPDCMAKEFL 54
           +K EQLKKIGRD V+LL+P  P+ L +L+ LS+YKY+P  W PD   +EF+
Sbjct: 189 QKEEQLKKIGRDPVELLIPAKPEDLHVLVNLSIYKYNPFKWAPDYFLQEFI 239

[Close]
BLAST of Lsi07G006200.1 vs. NCBI nr
Match: gi|970017428|ref|XP_015069848.1| (PREDICTED: 2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrolase [Solanum pennellii])

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-06
Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = 1 

Query: 4   EKVEQLKKIGRDAVDLLVPETPQHLKILMKLSMYKYDP-SWWPDCMAKEFL 54
           +K EQLKKIGRD V+LL+P  P+ L +L+ LS+YKY+P  W PD   +EF+
Sbjct: 189 QKEEQLKKIGRDPVELLIPAKPEDLHVLVNLSIYKYNPFKWAPDYFLQEFI 239

[Close]
BLAST of Lsi07G006200.1 vs. NCBI nr
Match: gi|698499489|ref|XP_009795564.1| (PREDICTED: epoxide hydrolase 4-like [Nicotiana sylvestris])

HSP 1 Score: 59.3 bits (142), Expect = 2.7e-06
Identity = 26/51 (50.98%), Postives = 38/51 (74.51%), Query Frame = 1 

Query: 4   EKVEQLKKIGRDAVDLLVPETPQHLKILMKLSMYKYDP-SWWPDCMAKEFL 54
           +K EQLK+IGRD V+LL+P  P+ L +L+ +S+YKY+P  W PD   +EF+
Sbjct: 189 QKEEQLKRIGRDPVELLIPAKPEDLHVLVNMSIYKYNPFKWAPDAFLQEFI 239

The following BLAST results are available for this feature:
BLAST of Lsi07G006200.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi07G006200.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A166EPC2_DAUCA1.3e-0750.00Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_007647 PE=4 SV=1[more]
M1B3M3_SOLTU8.4e-0754.90Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400014029 PE=4 SV=1[more]
M1B3M4_SOLTU8.4e-0754.90Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400014029 PE=4 SV=1[more]
A0A0V0HYB8_SOLCH8.4e-0754.90Putative epoxide hydrolase 4-like OS=Solanum chacoense PE=4 SV=1[more]
K4BN38_SOLLC1.9e-0654.90Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
BLAST of Lsi07G006200.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi07G006200.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|1021049030|gb|KZN06810.1|1.9e-0750.00hypothetical protein DCAR_007647 [Daucus carota subsp. sativus][more]
gi|697182059|ref|XP_009600030.1|9.3e-0752.83PREDICTED: epoxide hydrolase 4 [Nicotiana tomentosiformis][more]
gi|565351964|ref|XP_006342917.1|1.2e-0654.90PREDICTED: 2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrol... [more]
gi|970017428|ref|XP_015069848.1|1.2e-0654.90PREDICTED: 2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrol... [more]
gi|698499489|ref|XP_009795564.1|2.7e-0650.98PREDICTED: epoxide hydrolase 4-like [Nicotiana sylvestris][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003824 catalytic activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lsi07G006200Lsi07G006200gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi07G006200.1.CDS.2Lsi07G006200.1.CDS.2CDS
Lsi07G006200.1.CDS.1Lsi07G006200.1.CDS.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lsi07G006200.1Lsi07G006200.1-proteinpolypeptide