Lsi07G004240 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi07G004240
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr07 : 4496980 .. 4498107 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGAAGACCAAAAACGCTGTCATGGTCATGGAACTGAAGCAGATGGTTCAAGTCATGAGATGATTTTAAGAGCATTTGATCGAAATGGGGTTGCAAAAAACTCGTGGAAAGATGGCAACAGTTCGAGAGTGAAAGCTTGTGAAGTTGAAAAGATCAGTAGAAGACTGAGCATTCTTGAAGAAGGTACAAGAACTATGAAGAAAGATTTGTTTAACAGTTTGGAGGAAAGAAGAAATCTTGTGTATGAGATAAACCAGCAATTTCAGATCATAAACAAAGGCCATACGTTCTCTAATGAGGTAGCGGCTGCTTTGATGGCTTATCTTGAAGATGATGATGAGACACTCCATCCCCCTAAGGTAAAATTATTTGAATCTTGTGATATACTTCAAATTTCTTGAATTTAACTTTTTAATGGAAAATAGACATATTTGGAAATGATTTTGAGATGGTTAAAATCATTTTTGTAATATTCAAAACCACTCTAAAATAAATCTTTAATAATTTAAAATCAATTTAATGTTTAGTTTTTACTTTTAAATGTCATTTTCATACAACTAAAATGGACTTAGCTCAACAGTAATTGACATGCATTCTTTCCCTTAAAGTCAGAGGTTCGACTCTCCATCTTTATAGTTGTTGTACTAAAAAAATGTTATTTTCACACGATTAAAATTGATTTTAAATGATTAATAATATGTTTTAGAGTATTGAACCTGAAAAAAGTGATCTTAATAATTTCAAAACTAGTTAAGCTTTATGCTTTTTGATTGACCTCCCGTTTCAATGTTTCATATTTCTTTTACATTTCTTTGCAGTAGAGAGTATTTTTTTTTTCCTTCATAATTTCCATAGCATCATTGTAAATGAAAGAATAGGAACTCTTTATAAAAGAGAAACACATTATGTTTGCATTATTTTGGATTTTACTTATAGGCCTCTCTATTACTGAGTTTATATGGTTGTGGATTTGGTGGAGAAAACAGGAATGGAAACGTGGTGTTGGCCTATCAGAAATCTTTGACCACCAACCAAATATATCTCTCGTCTTCAAACATTTCAAAGCAAATTCGTTGGCATGGACAGATTCTACCAAATCTTTGCATCTTATAAGAGAAAAATGA

mRNA sequence

ATGGCAGAAGACCAAAAACGCTGTCATGGTCATGGAACTGAAGCAGATGGTTCAAGTCATGAGATGATTTTAAGAGCATTTGATCGAAATGGGGTTGCAAAAAACTCGTGGAAAGATGGCAACAGTTCGAGAGTGAAAGCTTGTGAAGTTGAAAAGATCAGTAGAAGACTGAGCATTCTTGAAGAAGGTACAAGAACTATGAAGAAAGATTTGTTTAACAGTTTGGAGGAAAGAAGAAATCTTGTGTATGAGATAAACCAGCAATTTCAGATCATAAACAAAGGCCATACGTTCTCTAATGAGGTAGCGGCTGCTTTGATGGCTTATCTTGAAGATGATGATGAGACACTCCATCCCCCTAAGGAATGGAAACGTGGTGTTGGCCTATCAGAAATCTTTGACCACCAACCAAATATATCTCTCGTCTTCAAACATTTCAAAGCAAATTCGTTGGCATGGACAGATTCTACCAAATCTTTGCATCTTATAAGAGAAAAATGA

Coding sequence (CDS)

ATGGCAGAAGACCAAAAACGCTGTCATGGTCATGGAACTGAAGCAGATGGTTCAAGTCATGAGATGATTTTAAGAGCATTTGATCGAAATGGGGTTGCAAAAAACTCGTGGAAAGATGGCAACAGTTCGAGAGTGAAAGCTTGTGAAGTTGAAAAGATCAGTAGAAGACTGAGCATTCTTGAAGAAGGTACAAGAACTATGAAGAAAGATTTGTTTAACAGTTTGGAGGAAAGAAGAAATCTTGTGTATGAGATAAACCAGCAATTTCAGATCATAAACAAAGGCCATACGTTCTCTAATGAGGTAGCGGCTGCTTTGATGGCTTATCTTGAAGATGATGATGAGACACTCCATCCCCCTAAGGAATGGAAACGTGGTGTTGGCCTATCAGAAATCTTTGACCACCAACCAAATATATCTCTCGTCTTCAAACATTTCAAAGCAAATTCGTTGGCATGGACAGATTCTACCAAATCTTTGCATCTTATAAGAGAAAAATGA

Protein sequence

MAEDQKRCHGHGTEADGSSHEMILRAFDRNGVAKNSWKDGNSSRVKACEVEKISRRLSILEEGTRTMKKDLFNSLEERRNLVYEINQQFQIINKGHTFSNEVAAALMAYLEDDDETLHPPKEWKRGVGLSEIFDHQPNISLVFKHFKANSLAWTDSTKSLHLIREK
Homology
[Close]
BLAST of Lsi07G004240 vs. TrEMBL
Match: A0A0A0KVL6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G006360 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.2e-47
Identity = 101/121 (83.47%), Postives = 105/121 (86.78%), Query Frame = 1 

Query: 1   MAEDQKRCHGHGTEADGSSHEMILRAFDRNGVAKNSWKDGNSSRVKACEVEKISRRLSIL 60
           MAE QKR HGHGTEADGSSHEM+LR FDRNGVAKNS KDG++S VKACEVEKI RRLSIL
Sbjct: 1   MAEHQKRSHGHGTEADGSSHEMVLRTFDRNGVAKNSSKDGSTSSVKACEVEKIGRRLSIL 60

Query: 61  EEGTRTMKKDLFNSLEERRNLVYEINQQFQIINKGHTFSNEVAAALMAYLEDDDETLHPP 120
           EE TR MKK LF+SLEERRNLVYEINQQFQIINK H   NEVAAALMA LED DETLH P
Sbjct: 61  EEDTRAMKKALFDSLEERRNLVYEINQQFQIINKSHALYNEVAAALMASLEDHDETLHSP 120

Query: 121 K 122
           K
Sbjct: 121 K 121

[Close]
BLAST of Lsi07G004240 vs. TrEMBL
Match: F6HXL8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g08110 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.5e-08
Identity = 40/114 (35.09%), Postives = 65/114 (57.02%), Query Frame = 1 

Query: 46  KACEVEKISRRLSILEEGTRTMKKDLFNSLEERRNLVYEINQQFQIINKGHTFSNEVAAA 105
           +A EVE++++RL ILEE    +K+  F+S+EER+ L+ EI+Q FQII   H F    +  
Sbjct: 46  QAGEVEQLNKRLQILEEDAAVIKQSFFSSVEERKKLIREIHQLFQII---HHFLCLQSQG 105

Query: 106 LMAYLEDDDETLHPPKEWKRGVGLSEIFDHQPNISLVFKHFKANSLAWTDSTKS 160
                      ++P K+ + G GLS++     N +LV +  +AN LA+  + +S
Sbjct: 106 TGEKTHAGALIINPHKDGRMGTGLSQVLIQDSNPALVTRGLRANMLAFQGTAES 156

[Close]
BLAST of Lsi07G004240 vs. NCBI nr
Match: gi|778689642|ref|XP_011652992.1| (PREDICTED: uncharacterized protein LOC105435163 isoform X1 [Cucumis sativus])

HSP 1 Score: 265.8 bits (678), Expect = 5.2e-68
Identity = 135/165 (81.82%), Postives = 143/165 (86.67%), Query Frame = 1 

Query: 1   MAEDQKRCHGHGTEADGSSHEMILRAFDRNGVAKNSWKDGNSSRVKACEVEKISRRLSIL 60
           MAE QKR HGHGTEADGSSHEM+LR FDRNGVAKNS KDG++S VKACEVEKI RRLSIL
Sbjct: 1   MAEHQKRSHGHGTEADGSSHEMVLRTFDRNGVAKNSSKDGSTSSVKACEVEKIGRRLSIL 60

Query: 61  EEGTRTMKKDLFNSLEERRNLVYEINQQFQIINKGHTFSNEVAAALMAYLEDDDETLHPP 120
           EE TR MKK LF+SLEERRNLVYEINQQFQIINK H   NEVAAALMA LED DETLH P
Sbjct: 61  EEDTRAMKKALFDSLEERRNLVYEINQQFQIINKSHALYNEVAAALMASLEDHDETLHSP 120

Query: 121 KEWKRGVGLSEIFDHQPNISLVFKHFKANSLAWTDSTKSLHLIRE 166
           KEW+ GVGLSEIF  Q NISLVFKHFK N LA+T+STKSLHL+RE
Sbjct: 121 KEWRGGVGLSEIFHRQANISLVFKHFKPNLLAFTNSTKSLHLMRE 165

[Close]
BLAST of Lsi07G004240 vs. NCBI nr
Match: gi|659108415|ref|XP_008454187.1| (PREDICTED: uncharacterized protein LOC103494668 isoform X1 [Cucumis melo])

HSP 1 Score: 246.1 bits (627), Expect = 4.2e-62
Identity = 129/165 (78.18%), Postives = 138/165 (83.64%), Query Frame = 1 

Query: 1   MAEDQKRCHGHGTEADGSSHEMILRAFDRNGVAKNSWKDGNSSRVKACEVEKISRRLSIL 60
           MAE QKR H H TEADGSSHEM+LR FDRNGVAK S K G+ SRVKACEVE+I RRL+IL
Sbjct: 1   MAEHQKRSHWHATEADGSSHEMVLRTFDRNGVAKYSSKSGSRSRVKACEVEQIGRRLTIL 60

Query: 61  EEGTRTMKKDLFNSLEERRNLVYEINQQFQIINKGHTFSNEVAAALMAYLEDDDETLHPP 120
           EE TR MKK LF+SLEER+NLVYEINQQFQIINK H   NEV AALMA LED DETLH P
Sbjct: 61  EEDTRAMKKALFDSLEERKNLVYEINQQFQIINKSHELCNEV-AALMASLEDHDETLHSP 120

Query: 121 KEWKRGVGLSEIFDHQPNISLVFKHFKANSLAWTDSTKSLHLIRE 166
           KE + GVGLSEIF HQ NISLVFKHFK N LA+TDSTKSLHL+RE
Sbjct: 121 KESRGGVGLSEIFHHQANISLVFKHFKPNLLAFTDSTKSLHLMRE 164

[Close]
BLAST of Lsi07G004240 vs. NCBI nr
Match: gi|778689645|ref|XP_011652993.1| (PREDICTED: uncharacterized protein LOC105435163 isoform X2 [Cucumis sativus])

HSP 1 Score: 227.6 bits (579), Expect = 1.6e-56
Identity = 116/144 (80.56%), Postives = 124/144 (86.11%), Query Frame = 1 

Query: 22  MILRAFDRNGVAKNSWKDGNSSRVKACEVEKISRRLSILEEGTRTMKKDLFNSLEERRNL 81
           M+LR FDRNGVAKNS KDG++S VKACEVEKI RRLSILEE TR MKK LF+SLEERRNL
Sbjct: 1   MVLRTFDRNGVAKNSSKDGSTSSVKACEVEKIGRRLSILEEDTRAMKKALFDSLEERRNL 60

Query: 82  VYEINQQFQIINKGHTFSNEVAAALMAYLEDDDETLHPPKEWKRGVGLSEIFDHQPNISL 141
           VYEINQQFQIINK H   NEVAAALMA LED DETLH PKEW+ GVGLSEIF  Q NISL
Sbjct: 61  VYEINQQFQIINKSHALYNEVAAALMASLEDHDETLHSPKEWRGGVGLSEIFHRQANISL 120

Query: 142 VFKHFKANSLAWTDSTKSLHLIRE 166
           VFKHFK N LA+T+STKSLHL+RE
Sbjct: 121 VFKHFKPNLLAFTNSTKSLHLMRE 144

[Close]
BLAST of Lsi07G004240 vs. NCBI nr
Match: gi|659108417|ref|XP_008454188.1| (PREDICTED: uncharacterized protein LOC103494668 isoform X2 [Cucumis melo])

HSP 1 Score: 213.4 bits (542), Expect = 3.0e-52
Identity = 112/144 (77.78%), Postives = 121/144 (84.03%), Query Frame = 1 

Query: 22  MILRAFDRNGVAKNSWKDGNSSRVKACEVEKISRRLSILEEGTRTMKKDLFNSLEERRNL 81
           M+LR FDRNGVAK S K G+ SRVKACEVE+I RRL+ILEE TR MKK LF+SLEER+NL
Sbjct: 1   MVLRTFDRNGVAKYSSKSGSRSRVKACEVEQIGRRLTILEEDTRAMKKALFDSLEERKNL 60

Query: 82  VYEINQQFQIINKGHTFSNEVAAALMAYLEDDDETLHPPKEWKRGVGLSEIFDHQPNISL 141
           VYEINQQFQIINK H   NEV AALMA LED DETLH PKE + GVGLSEIF HQ NISL
Sbjct: 61  VYEINQQFQIINKSHELCNEV-AALMASLEDHDETLHSPKESRGGVGLSEIFHHQANISL 120

Query: 142 VFKHFKANSLAWTDSTKSLHLIRE 166
           VFKHFK N LA+TDSTKSLHL+RE
Sbjct: 121 VFKHFKPNLLAFTDSTKSLHLMRE 143

[Close]
BLAST of Lsi07G004240 vs. NCBI nr
Match: gi|700197771|gb|KGN52929.1| (hypothetical protein Csa_4G006360 [Cucumis sativus])

HSP 1 Score: 197.6 bits (501), Expect = 1.7e-47
Identity = 101/121 (83.47%), Postives = 105/121 (86.78%), Query Frame = 1 

Query: 1   MAEDQKRCHGHGTEADGSSHEMILRAFDRNGVAKNSWKDGNSSRVKACEVEKISRRLSIL 60
           MAE QKR HGHGTEADGSSHEM+LR FDRNGVAKNS KDG++S VKACEVEKI RRLSIL
Sbjct: 1   MAEHQKRSHGHGTEADGSSHEMVLRTFDRNGVAKNSSKDGSTSSVKACEVEKIGRRLSIL 60

Query: 61  EEGTRTMKKDLFNSLEERRNLVYEINQQFQIINKGHTFSNEVAAALMAYLEDDDETLHPP 120
           EE TR MKK LF+SLEERRNLVYEINQQFQIINK H   NEVAAALMA LED DETLH P
Sbjct: 61  EEDTRAMKKALFDSLEERRNLVYEINQQFQIINKSHALYNEVAAALMASLEDHDETLHSP 120

Query: 121 K 122
           K
Sbjct: 121 K 121

The following BLAST results are available for this feature:
BLAST of Lsi07G004240 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi07G004240 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KVL6_CUCSA1.2e-4783.47Uncharacterized protein OS=Cucumis sativus GN=Csa_4G006360 PE=4 SV=1[more]
F6HXL8_VITVI2.5e-0835.09Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g08110 PE=4 SV=... [more]
BLAST of Lsi07G004240 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi07G004240 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778689642|ref|XP_011652992.1|5.2e-6881.82PREDICTED: uncharacterized protein LOC105435163 isoform X1 [Cucumis sativus][more]
gi|659108415|ref|XP_008454187.1|4.2e-6278.18PREDICTED: uncharacterized protein LOC103494668 isoform X1 [Cucumis melo][more]
gi|778689645|ref|XP_011652993.1|1.6e-5680.56PREDICTED: uncharacterized protein LOC105435163 isoform X2 [Cucumis sativus][more]
gi|659108417|ref|XP_008454188.1|3.0e-5277.78PREDICTED: uncharacterized protein LOC103494668 isoform X2 [Cucumis melo][more]
gi|700197771|gb|KGN52929.1|1.7e-4783.47hypothetical protein Csa_4G006360 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi07G004240.1Lsi07G004240.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi07G004240Csa4G006360Cucumber (Chinese Long) v2culsiB312
Lsi07G004240CSPI04G01920Wild cucumber (PI 183967)cpilsiB311
Lsi07G004240CmaCh14G013700Cucurbita maxima (Rimu)cmalsiB256
Lsi07G004240CmoCh14G014060Cucurbita moschata (Rifu)cmolsiB244
Lsi07G004240MELO3C017845Melon (DHL92) v3.5.1lsimeB447
Lsi07G004240Cla97C07G139040Watermelon (97103) v2lsiwmbB405
Lsi07G004240Bhi01G002800Wax gourdlsiwgoB558
Lsi07G004240Cp4.1LG03g13640Cucurbita pepo (Zucchini)cpelsiB515
Lsi07G004240Carg06525Silver-seed gourdcarlsiB109
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi07G004240Bottle gourd (USVL1VR-Ls)lsilsiB117
Lsi07G004240Cucumber (Gy14) v1cgylsiB113
Lsi07G004240Cucumber (Gy14) v1cgylsiB136
Lsi07G004240Cucurbita maxima (Rimu)cmalsiB449
Lsi07G004240Cucurbita maxima (Rimu)cmalsiB450
Lsi07G004240Cucurbita maxima (Rimu)cmalsiB736
Lsi07G004240Cucurbita moschata (Rifu)cmolsiB436
Lsi07G004240Cucurbita moschata (Rifu)cmolsiB437
Lsi07G004240Cucurbita moschata (Rifu)cmolsiB727
Lsi07G004240Cucurbita pepo (Zucchini)cpelsiB472
Lsi07G004240Cucurbita pepo (Zucchini)cpelsiB476
Lsi07G004240Cucurbita pepo (Zucchini)cpelsiB516
Lsi07G004240Wild cucumber (PI 183967)cpilsiB546
Lsi07G004240Melon (DHL92) v3.5.1lsimeB430
Lsi07G004240Watermelon (Charleston Gray)lsiwcgB387
Lsi07G004240Watermelon (Charleston Gray)lsiwcgB406
Lsi07G004240Watermelon (97103) v1lsiwmB438
Lsi07G004240Cucumber (Gy14) v2cgyblsiB285
Lsi07G004240Cucumber (Gy14) v2cgyblsiB502
Lsi07G004240Melon (DHL92) v3.6.1lsimedB451
Lsi07G004240Melon (DHL92) v3.6.1lsimedB465
Lsi07G004240Silver-seed gourdcarlsiB182
Lsi07G004240Silver-seed gourdcarlsiB183
Lsi07G004240Cucumber (Chinese Long) v3cuclsiB150
Lsi07G004240Cucumber (Chinese Long) v3cuclsiB331
Lsi07G004240Cucumber (Chinese Long) v3cuclsiB568
Lsi07G004240Watermelon (97103) v2lsiwmbB420