Carg06525 (gene) Silver-seed gourd

NameCarg06525
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionSerine--tRNA ligase
LocationCucurbita_argyrosperma_scaffold_051 : 1111747 .. 1112780 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCCGAAGCCCAAAAGTTAGAAAATTTTTAGAGGCCAAGTAAGAAAAAGTCTTCTTGTGTTCCACCTTCACACCACAACCGAGAGAGCTTACGAACTGGCCTCAGAAATTGATGAAGCTGACTGTTTTCTAAGGCAGCTACAATGGCAGAACGCCAAAAACGCCCTATTGGGCATGGATTGGAAGTAGATGATTCACGCCATGAGAAGGCTTTAAGAGCATTTGATCAAAATGGGGTTACGAGAAACTCATCAAAAGACGGTCCCAGTTGGAGAGTTAAACCTTGTGAAGTTGAGAAGATCAGTAGAAGACTGAGCCTTCTTGAAGAAGATACTAGAGCTATGAAGAAAGCTTTGTTTGAGAGTTTGGAGGAAAGAAGAAATCTGGTGTATGAGATAAACCAGCAATTTCAGAGCATAAGCAAACACCATCAACTCTGTAACGAGGTAGCTGAAGATCACGATGAGACACTCCAACTCCCTGAGGTAAAATGCTTTGAATCTTCTGATATACTTCAAATTTCTTGAATTCATACTTAGAATGGAACATAGATCGTCTGAACATTGTTTGCAGAACAAAGAGAGCTTGTTTTTGTTTTGTTTTGTTTTGTTTTACATGAATTCCATAGCCTCGCTGTGGATGAAAGAATAGGATTAGGAACTGAAATTCATAGATACACATTAAGGTTTTTGCATCATTTTGTGGCATTACTTACTTAAAGCCCTCAGCCCTATATGACTGATCGATCTTATGTGGTATGGTGTGGATTTTGGTGGCGAAAACAGGAATGGAGAAGTGGTGTTGGCCTATCACAAATCTTTCACCACCAACCAAATATATCTCTCGTCTTCAAACATTTCAAACCAAATTTGTTGGCATTCACTGATTATCTTCCAACAGAAAAATGATCTATTTGGGAGAGACCCGAAGAATGTAAGCATTGGGAGTTCGTCCTTTAACCAATTGAGTTATATTTAGGCTGGCTATTACAG

mRNA sequence

CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCCGAAGCCCAAAAGTTAGAAAATTTTTAGAGGCCAAGTAAGAAAAAGTCTTCTTGTGTTCCACCTTCACACCACAACCGAGAGAGCTTACGAACTGGCCTCAGAAATTGATGAAGCTGACTGTTTTCTAAGGCAGCTACAATGGCAGAACGCCAAAAACGCCCTATTGGGCATGGATTGGAAGTAGATGATTCACGCCATGAGAAGGCTTTAAGAGCATTTGATCAAAATGGGGTTACGAGAAACTCATCAAAAGACGGTCCCAGTTGGAGAGTTAAACCTTGTGAAGTTGAGAAGATCAGTAGAAGACTGAGCCTTCTTGAAGAAGATACTAGAGCTATGAAGAAAGCTTTGTTTGAGAGTTTGGAGGAAAGAAGAAATCTGGTGTATGAGATAAACCAGCAATTTCAGAGCATAAGCAAACACCATCAACTCTGTAACGAGGTAGCTGAAGATCACGATGAGACACTCCAACTCCCTGAGGAATGGAGAAGTGGTGTTGGCCTATCACAAATCTTTCACCACCAACCAAATATATCTCTCGTCTTCAAACATTTCAAACCAAATTTGTTGGCATTCACTGATTATCTTCCAACAGAAAAATGATCTATTTGGGAGAGACCCGAAGAATGTAAGCATTGGGAGTTCGTCCTTTAACCAATTGAGTTATATTTAGGCTGGCTATTACAG

Coding sequence (CDS)

ATGGCAGAACGCCAAAAACGCCCTATTGGGCATGGATTGGAAGTAGATGATTCACGCCATGAGAAGGCTTTAAGAGCATTTGATCAAAATGGGGTTACGAGAAACTCATCAAAAGACGGTCCCAGTTGGAGAGTTAAACCTTGTGAAGTTGAGAAGATCAGTAGAAGACTGAGCCTTCTTGAAGAAGATACTAGAGCTATGAAGAAAGCTTTGTTTGAGAGTTTGGAGGAAAGAAGAAATCTGGTGTATGAGATAAACCAGCAATTTCAGAGCATAAGCAAACACCATCAACTCTGTAACGAGGTAGCTGAAGATCACGATGAGACACTCCAACTCCCTGAGGAATGGAGAAGTGGTGTTGGCCTATCACAAATCTTTCACCACCAACCAAATATATCTCTCGTCTTCAAACATTTCAAACCAAATTTGTTGGCATTCACTGATTATCTTCCAACAGAAAAATGA

Protein sequence

MAERQKRPIGHGLEVDDSRHEKALRAFDQNGVTRNSSKDGPSWRVKPCEVEKISRRLSLLEEDTRAMKKALFESLEERRNLVYEINQQFQSISKHHQLCNEVAEDHDETLQLPEEWRSGVGLSQIFHHQPNISLVFKHFKPNLLAFTDYLPTEK
BLAST of Carg06525 vs. NCBI nr
Match: XP_022956319.1 (uncharacterized protein LOC111458052 [Cucurbita moschata])

HSP 1 Score: 312.0 bits (798), Expect = 1.1e-81
Identity = 152/154 (98.70%), Postives = 153/154 (99.35%), Query Frame = 0

Query: 1   MAERQKRPIGHGLEVDDSRHEKALRAFDQNGVTRNSSKDGPSWRVKPCEVEKISRRLSLL 60
           MAERQKRPIGHGLEVDDSRHEKALRAFDQNGVTRNSSKDGPSWRVKPCEVEKISRRLSLL
Sbjct: 1   MAERQKRPIGHGLEVDDSRHEKALRAFDQNGVTRNSSKDGPSWRVKPCEVEKISRRLSLL 60

Query: 61  EEDTRAMKKALFESLEERRNLVYEINQQFQSISKHHQLCNEVAEDHDETLQLPEEWRSGV 120
           EEDTRAMKKALFESLEERRNL+YEINQQFQSISKHHQLCNEVAEDHDETLQLPEEWR GV
Sbjct: 61  EEDTRAMKKALFESLEERRNLLYEINQQFQSISKHHQLCNEVAEDHDETLQLPEEWRRGV 120

Query: 121 GLSQIFHHQPNISLVFKHFKPNLLAFTDYLPTEK 155
           GLSQIFHHQPNISLVFKHFKPNLLAFTDYLPTEK
Sbjct: 121 GLSQIFHHQPNISLVFKHFKPNLLAFTDYLPTEK 154

BLAST of Carg06525 vs. NCBI nr
Match: XP_022980171.1 (uncharacterized protein LOC111479641 [Cucurbita maxima])

HSP 1 Score: 303.5 bits (776), Expect = 4.0e-79
Identity = 147/154 (95.45%), Postives = 150/154 (97.40%), Query Frame = 0

Query: 1   MAERQKRPIGHGLEVDDSRHEKALRAFDQNGVTRNSSKDGPSWRVKPCEVEKISRRLSLL 60
           MAE QKRP+GHGLEVDDSRHEKALRAFDQNGVTRNSSKDGPSWRV+PCEVEKISRRLSLL
Sbjct: 1   MAENQKRPLGHGLEVDDSRHEKALRAFDQNGVTRNSSKDGPSWRVEPCEVEKISRRLSLL 60

Query: 61  EEDTRAMKKALFESLEERRNLVYEINQQFQSISKHHQLCNEVAEDHDETLQLPEEWRSGV 120
           EEDTRAMKKALFESLEERRNLVYEINQQFQSISKHHQLCNEVAEDHDETLQLPEEWR G 
Sbjct: 61  EEDTRAMKKALFESLEERRNLVYEINQQFQSISKHHQLCNEVAEDHDETLQLPEEWRRGA 120

Query: 121 GLSQIFHHQPNISLVFKHFKPNLLAFTDYLPTEK 155
           GLSQIFHHQPNISLVFKHFKPNLLAF+DYLP EK
Sbjct: 121 GLSQIFHHQPNISLVFKHFKPNLLAFSDYLPREK 154

BLAST of Carg06525 vs. NCBI nr
Match: XP_023525995.1 (uncharacterized protein LOC111789606 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 300.4 bits (768), Expect = 3.4e-78
Identity = 150/156 (96.15%), Postives = 153/156 (98.08%), Query Frame = 0

Query: 1   MAERQKRPIGHGLE-VDDSRHEKA-LRAFDQNGVTRNSSKDGPSWRVKPCEVEKISRRLS 60
           MAE QKRP+GHGLE VDDSRHEKA LRAFDQNGV+RNSSKDGPSWRV+PCEVEKISRRLS
Sbjct: 1   MAEHQKRPVGHGLEVVDDSRHEKALLRAFDQNGVSRNSSKDGPSWRVEPCEVEKISRRLS 60

Query: 61  LLEEDTRAMKKALFESLEERRNLVYEINQQFQSISKHHQLCNEVAEDHDETLQLPEEWRS 120
           LLEEDTRAMKKALFESLEERRNLVYEINQQFQSISKHHQLCNEVAEDHDETLQLPEEWRS
Sbjct: 61  LLEEDTRAMKKALFESLEERRNLVYEINQQFQSISKHHQLCNEVAEDHDETLQLPEEWRS 120

Query: 121 GVGLSQIFHHQPNISLVFKHFKPNLLAFTDYLPTEK 155
           GVGLSQIFHHQPNISLVFKHFKPNLLAFTDYLPTEK
Sbjct: 121 GVGLSQIFHHQPNISLVFKHFKPNLLAFTDYLPTEK 156

BLAST of Carg06525 vs. NCBI nr
Match: XP_011652992.1 (PREDICTED: uncharacterized protein LOC105435163 isoform X1 [Cucumis sativus])

HSP 1 Score: 220.3 bits (560), Expect = 4.5e-54
Identity = 114/155 (73.55%), Postives = 123/155 (79.35%), Query Frame = 0

Query: 1   MAERQKRPIGHGLEVDDSRHEKALRAFDQNGVTRNSSKDGPSWRVKPCEVEKISRRLSLL 60
           MAE QKR  GHG E D S HE  LR FD+NGV +NSSKDG +  VK CEVEKI RRLS+L
Sbjct: 1   MAEHQKRSHGHGTEADGSSHEMVLRTFDRNGVAKNSSKDGSTSSVKACEVEKIGRRLSIL 60

Query: 61  EEDTRAMKKALFESLEERRNLVYEINQQFQSISKHHQLCNEVA-------EDHDETLQLP 120
           EEDTRAMKKALF+SLEERRNLVYEINQQFQ I+K H L NEVA       EDHDETL  P
Sbjct: 61  EEDTRAMKKALFDSLEERRNLVYEINQQFQIINKSHALYNEVAAALMASLEDHDETLHSP 120

Query: 121 EEWRSGVGLSQIFHHQPNISLVFKHFKPNLLAFTD 149
           +EWR GVGLS+IFH Q NISLVFKHFKPNLLAFT+
Sbjct: 121 KEWRGGVGLSEIFHRQANISLVFKHFKPNLLAFTN 155

BLAST of Carg06525 vs. NCBI nr
Match: XP_022153486.1 (uncharacterized protein LOC111020982 [Momordica charantia] >XP_022153487.1 uncharacterized protein LOC111020982 [Momordica charantia] >XP_022153488.1 uncharacterized protein LOC111020982 [Momordica charantia])

HSP 1 Score: 215.3 bits (547), Expect = 1.4e-52
Identity = 110/152 (72.37%), Postives = 121/152 (79.61%), Query Frame = 0

Query: 1   MAERQKRPIGHGLEVDDSRHEKALRAFDQNGVTRNSSKDGPSWRVKPCEVEKISRRLSLL 60
           MAE Q+ P  H +E D SRHE  LRAFDQNGV +  SKD P  RVK CEVEKISRRL++L
Sbjct: 1   MAEHQEFPHSHRMEADGSRHEMVLRAFDQNGVAKKPSKDTPGSRVKACEVEKISRRLNIL 60

Query: 61  EEDTRAMKKALFESLEERRNLVYEINQQFQSISKHHQLCNEVA-------EDHDETLQLP 120
           EEDTR MKKALF+SLEE RNLVYEINQQFQSI+K HQLCNEVA       EDHDETL  P
Sbjct: 61  EEDTRDMKKALFDSLEESRNLVYEINQQFQSINKSHQLCNEVASGFMAPLEDHDETLNSP 120

Query: 121 EEWRSGVGLSQIFHHQPNISLVFKHFKPNLLA 146
           + WR+GVGLS+IFHHQPN+SLVFKHFK  LLA
Sbjct: 121 KVWRNGVGLSEIFHHQPNLSLVFKHFKATLLA 152

BLAST of Carg06525 vs. TrEMBL
Match: tr|A0A1S4DZN5|A0A1S4DZN5_CUCME (uncharacterized protein LOC103494669 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103494669 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 6.6e-46
Identity = 98/131 (74.81%), Postives = 109/131 (83.21%), Query Frame = 0

Query: 24  LRAFDQNGVTRNSSKDGPSWRVKPCEVEKISRRLSLLEEDTRAMKKALFESLEERRNLVY 83
           LR FD+NGV + SSK G   RVK CEVE+I RRL++LEEDTRAMKKALF+SLEER+NLVY
Sbjct: 3   LRTFDRNGVAKYSSKSGSRSRVKACEVEQIGRRLTILEEDTRAMKKALFDSLEERKNLVY 62

Query: 84  EINQQFQSISKHHQLCNEVA------EDHDETLQLPEEWRSGVGLSQIFHHQPNISLVFK 143
           EINQQFQ I+K H+LCNEVA      EDHDETL  P+E R GVGLS+IFHHQ NISLVFK
Sbjct: 63  EINQQFQIINKSHELCNEVAALMASLEDHDETLHSPKESRGGVGLSEIFHHQANISLVFK 122

Query: 144 HFKPNLLAFTD 149
           HFKPNLLAFTD
Sbjct: 123 HFKPNLLAFTD 133

BLAST of Carg06525 vs. TrEMBL
Match: tr|A0A0A0KVL6|A0A0A0KVL6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G006360 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.8e-35
Identity = 85/121 (70.25%), Postives = 92/121 (76.03%), Query Frame = 0

Query: 1   MAERQKRPIGHGLEVDDSRHEKALRAFDQNGVTRNSSKDGPSWRVKPCEVEKISRRLSLL 60
           MAE QKR  GHG E D S HE  LR FD+NGV +NSSKDG +  VK CEVEKI RRLS+L
Sbjct: 1   MAEHQKRSHGHGTEADGSSHEMVLRTFDRNGVAKNSSKDGSTSSVKACEVEKIGRRLSIL 60

Query: 61  EEDTRAMKKALFESLEERRNLVYEINQQFQSISKHHQLCNEVA-------EDHDETLQLP 115
           EEDTRAMKKALF+SLEERRNLVYEINQQFQ I+K H L NEVA       EDHDETL  P
Sbjct: 61  EEDTRAMKKALFDSLEERRNLVYEINQQFQIINKSHALYNEVAAALMASLEDHDETLHSP 120

BLAST of Carg06525 vs. TrEMBL
Match: tr|A0A2N9J5D6|A0A2N9J5D6_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS59612 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.3e-12
Identity = 46/103 (44.66%), Postives = 69/103 (66.99%), Query Frame = 0

Query: 50  VEKISRRLSLLEEDTRAMKKALFESLEERRNLVYEINQQFQSISKHHQLCNEVAED--HD 109
           VE  + RL++LEE+T+ MK+ +  +LEERRNLV +I +QFQ I  H  L N+V  +  +D
Sbjct: 117 VEHFNDRLNILEEETKTMKQDILRALEERRNLVNDIYEQFQIIHSHLCLRNQVMRETCYD 176

Query: 110 ETL--QLPEEWRSGVGLSQIFHHQPNISLVFKHFKPNLLAFTD 149
           +TL    P++ R G GLS+IF  +PN+SLV +    ++LAF +
Sbjct: 177 DTLIANSPKDGRIGTGLSEIFGQEPNLSLVTRDLTASMLAFQE 219

BLAST of Carg06525 vs. TrEMBL
Match: tr|F6HXL8|F6HXL8_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_09s0002g08110 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.9e-09
Identity = 48/155 (30.97%), Postives = 78/155 (50.32%), Query Frame = 0

Query: 6   KRPIGHGLEVDDSRHEKALRAFDQNGVTRNSSKDGPSWRVKPCEVEKISRRLSLLEEDTR 65
           K+P+GH      S++ K +  F                     EVE++++RL +LEED  
Sbjct: 24  KQPLGHSEVQAWSKYHKGMVVFQAG------------------EVEQLNKRLQILEEDAA 83

Query: 66  AMKKALFESLEERRNLVYEINQQFQSISKHHQLCNEVAEDHDET------LQLPEEWRSG 125
            +K++ F S+EER+ L+ EI+Q FQ I  HH LC +     ++T      +   ++ R G
Sbjct: 84  VIKQSFFSSVEERKKLIREIHQLFQII--HHFLCLQSQGTGEKTHAGALIINPHKDGRMG 143

Query: 126 VGLSQIFHHQPNISLVFKHFKPNLLAFTDYLPTEK 155
            GLSQ+     N +LV +  + N+LAF     +E+
Sbjct: 144 TGLSQVLIQDSNPALVTRGLRANMLAFQGTAESEE 158

BLAST of Carg06525 vs. TrEMBL
Match: tr|A0A2P4IDZ4|A0A2P4IDZ4_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_63699 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.8e-09
Identity = 41/104 (39.42%), Postives = 66/104 (63.46%), Query Frame = 0

Query: 50  VEKISRRLSLLEEDTRAMKKALFESLEERRNLVYEINQQFQSISKHHQLCNEV--AEDHD 109
           VE ++ RL +LEE+T+ MK+ + E+LEERR LV +I +QFQ I  H ++ N+V     +D
Sbjct: 67  VEHLNGRLKILEEETKTMKQDILEALEERRELVNDIYEQFQIIHSHLRIRNQVMGESSYD 126

Query: 110 ETL--QLPEEWR-SGVGLSQIFHHQPNISLVFKHFKPNLLAFTD 149
           +TL    P++ R  G G+++IF  +PN+ LV +  +   L F +
Sbjct: 127 DTLIANSPKDGRIIGTGITEIFLQEPNMPLVTRDLRAGTLEFQE 170

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022956319.11.1e-8198.70uncharacterized protein LOC111458052 [Cucurbita moschata][more]
XP_022980171.14.0e-7995.45uncharacterized protein LOC111479641 [Cucurbita maxima][more]
XP_023525995.13.4e-7896.15uncharacterized protein LOC111789606 [Cucurbita pepo subsp. pepo][more]
XP_011652992.14.5e-5473.55PREDICTED: uncharacterized protein LOC105435163 isoform X1 [Cucumis sativus][more]
XP_022153486.11.4e-5272.37uncharacterized protein LOC111020982 [Momordica charantia] >XP_022153487.1 uncha... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S4DZN5|A0A1S4DZN5_CUCME6.6e-4674.81uncharacterized protein LOC103494669 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A0A0KVL6|A0A0A0KVL6_CUCSA1.8e-3570.25Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G006360 PE=4 SV=1[more]
tr|A0A2N9J5D6|A0A2N9J5D6_FAGSY1.3e-1244.66Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS59612 PE=4 SV=1[more]
tr|F6HXL8|F6HXL8_VITVI2.9e-0930.97Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_09s0002g08110 PE=4 SV=... [more]
tr|A0A2P4IDZ4|A0A2P4IDZ4_QUESU3.8e-0939.42Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_63699 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg06525-RACarg06525-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20

The following gene(s) are paralogous to this gene:

None