Lsi07G004090 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi07G004090
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr07 : 4403090 .. 4409343 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGTTTGTTTGGTTCTACTCTTCGAGTAGCTTTTGGTTCTTCAAGTTCGTTGGGGCATTTTATCAAACATGTTGTGTTCACATCTGTAGTATGTAATTGAATTAGGTGGGTCTCGTTGTATGCTTGTGTATGTTTCAATAGATTAGCGAAATTTGAATTTTCAATAGTAATGTATCGCATTGTTTGTTTACAAAGCTTAATTACAAGATGCTTGATGATTTGTCCTATTGGAATTAACAGTTTGTTCAAAATCCATGTCTTTCTGCTGATTTTATCTTCTTGTTACCAACATACATGTGTTTAACATCTTTCTTTCATGCCCAGGATTGATTTCCATCTTGTGCAACTCTTCTTTGTTTGCATGCCGTCTTTGGGTGAACACCTTTATCTTTCTCTCTATATTAATTCTTTGTTTGGCTAGAGACATTATGGGTCCGTTTGGATCGACTTTTTAAGTGTTTAAATAAGTGTTTATAAATGCAAAAAAAAAAATGTTTATAAACACTTAGAAGGTCAATCCCGTGTCTTGATTATTTACCTAAATGCACCTATTTCCTGAAACAGCTGTTTATCTGGTGGCCCAGTATGCTCGTTATGAAATGAGGAAGATGGAAGCGGTAACTAAATTTCAGGGCCTCATTTTAAAGTTTCTTAAGTTGACGTTCTGCGTTTACTTCTTTATGTTTTCTTAGTCATTTTTTTCTGAAGACATTTGTGTCCTTTGATTTCATAATTTGACGTTTTCACATAATACTGTTTTCTTAGTTTGCTCTGTCTACCATTTTCTGGTTTACTTTTCCCTGAATTCTAAAATTATCATGTTTACTGGACAAAATTAGGTACCAATGAAAAATCCCTTTTATATGATAATTTTTCAATAGGATTCATCACTGAAGTACCAAGCTCTAAATTATTTGACGTAAAGCATTTATGTAGTACTCTGCACAATTTAAAGTTCACAGTTGTGTACTAGGTGTTCCCGTATATATTTGTAGTTATGGATGCAAAACGTTACATTGAGGGTCGTAATTATTATTATTGTGTCACAATAGTTCCAGTCTTCCAGAGTCATAATAGTTGGAGCCATTTTTTGTTCTATAGTATAGGTTTTTGTTTAGGTTTCTTTTGTTGGCACTAGGGGTTGCCTTCTTGTACGGCTGTTTTCATTCCTGCATTTTACCTTCTCAGTGAAAGTTTGGTTTGTCACAAAAATGTAATTGGCCAATAAAGCAAGTAGCTTAGCTTAAGCCTCTTTGATGCCCCTGTAATCCTGCCCTGGAGATAACAATGTTGTTCCTTTATGCAACATGAAGTTTAAGAGGTCTTTGTGTCACTGTCAAGTATTAGTTTGTTGTAGGAATATTTTCTTTTGTGTAATTTAGATTACCATCGCTAATTATCATTATTCCAGCTTAAGAGTTTGTTTAGGTAGACGTACATTCTTCTGAAAATTGTTCCCAAAAACTCATTTCTAACTTCCCGCCAAAAAAGAAAAATAAAAATCAGACTATCTTTTTGTTTGTTTGTTTTTTTTTTAATATTTTTAAATATATATATTTTTTCAATTGTTTCTGAATATTAAAAAAAAAAAAAGACTGCTGGAATCTTTTTAAATTTTATCTATATGAATGTGAAAATGGAATATATTTTGATGAGTTTGCACTAGTGTGGTAAGGATATATATAAATTGTTACTTTAAAAAACAGTAAAGAAGCACAAGCACATGAATTAGAGAAAAATGGTTCTATTTTCTGTTCTTTTTGAACTGTTTGAAAAAACCATCTTACCATATAAGTTTTCCGACTCAGAAAGTTATTATTCTTTATAAAGATAGATGATGGATTTCAAATATGGCTTTCAAACAATGTTTTAAGATTTCATGATTAGTAGTTCTTTAATTAGATATCAATGCAAGAGTTGAAATGACTGCATCATCATTTTTTCTTTTAAATCAAGATCAGTTGTCTATATTTTCATGTTTGGCATCATATACTTTCATTAAGAAGTTCAACCTTTTGAGACTCGGGTGTTAGATTATGAATTATGATTACTAGTAGTTGTCTCAATATTAAACTAGTGGTTTCAAGAGTGATTTGGTGTTAGAAATTGTAACAATTTCGTATGAGAACAACATTTGGAATACCTAGTGAATAAATTTAAGAATGTGGAAATTTGGACAGCCAAAAATTCACAGCTCTATATCTTTGTTGTTCTCATACAATTAGATCAGTTCATTGCGTATTGGCTGGCCTTGCCTTCTATAAAAGGTTAGCTCTAGTAACCTTTTAAGAAGTATCATTCTCTGGCTTCTAGGTATTCTGTCTGTCACTTACAGAATGGTCATGAGGAACCTCCTATATAAGATAGCAAGCAAAGAACACCTTTTTTAACAGAAGTGAATATATCATTTATTGATAAAAGATAGAGTTAATGTGTGTTTAGTAGTTAGAGAAGAAGGAAGAAGTTAGAAGATTAAATGAAATATTGCTAGAAACTTTTGAACATTTGAAAGTATAGATGTTAAACTACCTATAAATAGATCATACCATTTTTTTTTTTGGTTTAATTAGATATAAATGTTAGAGATGAAAAAGCCTCGTACGAATGGAGGTAATTGTCCTAAATTATCGTCCACCTATCTCCACAACGATAGATGTTGAAAACCTATAAATAGGTTTAGACCATGACTCTAATACCAATTGATAAGGACAATGGAACCTCTACCTATCTTATGATATGATATTGTCCACTTTGAGTATAAACGCTCATGACTTTATTTTTTGAACCATTCCAAAAGGCATCATACCAATGGAGATTTTGTTTGGACCTAACAATCTATATATGTTTATGTTTGTCTTCATAAACTTTAATTTAGAAGTTCAACCTTTTGAGACTTTGAAATTATGTTTTATGATAACTAGTAATTGTCTCAGATATTGAAGTTATGGTACCTAGTCGTTTCAAGGGAGATTTGGGGTTAAAAATGTAATGACCTCTTATGTGGACAACATTAGCTACACCTAGTGGTTTCAAGGGTGATTTGGGGTTAAAAAATGTAATGACCTCATATGTGAACAACATTTGCTACACCTAGTAAATGAATGTGAGAGTGTGGAGGGTTGCACAGTCAAAAGTTAACAGTTCTATATCTTTGTTGATCTCATATAATTAAATTAGTTTACATATATTACTTATTGCCTTTAAATTTTATAGATAAACACAAAGATTGATAGGGTTAACATTATGCAATCAGGTATCATCCTGGCTTCTCGTTACTTTATCTATCGCTAATAAAATGGTCTTGAGGAATCTGTTTTTGCGTAAAATGGCAAGAAAAGAACTATATAAGACTATATATATGTAGTTTTTAAAAATGAGGCAGAGAAAGTTAACAATGTTACCCATGGGAATTTGGATACTCAAGTTTTCCTTTGGTTCTTTGATTTGGTCCCTTAACAATATTTTTCTGTGATTTTCAGTTATTCAATGGTTTTCTTAACCAAAGTCACCATATCAGGATCTGGAGCTGAAAAAGAAGAAAGAAGAAGAAGAGAAAGCTAAACAAATAGAGTTAGAAGAGACTGAAGAAATTCATGAAAAAAACGGGGATCTTCAGGAGGTAAAGACAAGACTCGATAAACTTGAGGAAACTATAAAGGAAATTGCTGTTGAATCCAGAAAACAATCAGGGATTGGTATTATGACAAAGAACTCTGAAAAGGGTCAAGACGTTGATGAAACCAAACAGGGGGAAAATATTGATCCAAGCAAGTCTACGGATGACCATCTTGGTGAACAAAAAATAGTACCGGCTCCAGTTTTGCCCAAAGGTCGTGCAAGTGAGTCTACAACACGAGAAGATGGTAAGCATCAAAACCAAGGTGGAGGATCTTCTCCAGATGCCAAGAGATAAGGAAAACGCCTCTCTTAATATTACTGCAATATCTTGCGCATAGTAATTTTCCTTTTTGGTGAAGCTAGAGAAATGGAGTGAACCATGTTGCCAAGAATCCAATGGTACCAGGTTTTGTTAATAATTATATTGCTTGAGGCTGTAGCTTTGATCATTAACAATGTAAATGGTTAATAGGTAAAGGATCCATCCTCATTTTGTTATGACAATTAATTACCTCACGTTTAACAATCGATTTCTGTTTGTGTTATGTTTATGTAAATGTACCCAACTACAAAGCATTTCTTCTCTCTCTCTTCCCTCCTCTCCGAGATATTAATCAAGGAGGTCACCATAATGTGACTGACAATTTTGCACCATTAGATACATGTAAGAGAATTGTAAAAAGTATCTCGAATTTATATCTAGTAGTTATTAGGAAGTATACAAGTTCACCAAACAATTGTTAGGAGACAACTACACAGTGTAGCGACTTCATCAAATAACTTTTTTCCTCTCCTATTAGAAATCTTACTGAACTCATGAAGTCATTGTCAGTGGAATGAGATTGAACTAGATAACAAGTCATTGTCATCAAGTGGGCAGCTAAGTGGTTGTGTTCCTGCTCATCATGCTGTATTGCAGACCCAAAGGTCAGAACAAATCCAACCCCACCTTGTCCCAGGTCTCCTTACTGTAGATGTAGCTTGAATTCAACTTTGTACAATAAATTGATGATATACAAACAATATGTTGGACCAAACAGGTGGTTTATTTTTGGATTTTATCCTCTGACACATTAAAGCATTAACTTGATATTTTGAGGGTAGAATATTTTGAGAAAAGGTTGCTTTATCCATGTTATATACTTTTTTTTCCATAAAGTAAAGTAGTCTAATTAAATGTATTGGAGGCGAGCTTCTTTAATGATGACTTGTTATCCTAAGAGAAAGAAGGTGATTGGTTTAAACTTCACCTGATGCCATGTGATCATAGATCCACAATTTTTTTGGTACATTCTCTGGCTACTTTTGGTTTGTATCTGAAGAATTATTGTATGGAGTTTAATCATGTTTTCTTTGAGCACCCTATTTCTGTTTCAATTTATTTCAGTAAATATTTAACATATTACTTGATTTGATGAAACTTGATTCATTACTCAACCTCTGATAAATTACTACTTATGGCTTTAGTTGAGGTGCAAAATCAAAGGCTATGATTCTTCAATGTTGCAAAATGGGCAGTCTAACCCAAATAATGGACACCCCAACTGATGAAGTAACAAAGACAACAGATGGCCAAAACCCAAAGTTTGCTGAGTCATTTTCAGAAAGGTTGTGTGGTATGTATGATAAGAGATTTTTTATTGCCATCAATTGTATTAATAGCAGGATTTCTGTTACTTTTACATCTTGATACTAGGAGAAATTAGTTCCATTATTATGACTAATGATCATGGTTTAGATATATGATTAAGATGAACATGATTTGTTTGGGATATGAACCCCACCACTGGTTTGGCCTTATTAGGAGATCCTGTAGGTCAGAAATCAAGACAATGAAGATTTACCCACAATTTAATAATGTGGGAAAAATGATGATGGTGATGGAATAGCTGAGGGTGAGAAGGAGGGAGGGTCATTATGTGCCTTCATTACTTTTTCACAAGGTTTGCTATATCTACACCTACCTCTTTTTTTTTTTTTTTTTTTTTTTTTTGATCTTCTTCTAATGTGATGGTCTATTACTTTCAACTGCAAGTGGGTCAACAATGTTGTCATCCACCATTCTATTTGCATACATATATATTCATATGTCTCTGTATGGTGGTCTCATTAAATGAAAACTACAAGCATCCAAATTTGTGCTCATTTCATGGACCACACATCATAGTGTTTAGTCTTTGAAATTTAGGACCCCTTTATCCAACAATTTCATATTGGGGCTTTCTTGAAACTTCTTTCTCTCTCTCTCTCTCACATACACACACACACAAACATATTTGATTGACAAGAAGCCTAAAATATAATGTTGGATCTTGAATTATGACATAACTCCATGTTTGTCTCTGAAATTTATTTCTTATTTCTTTTTTTTTAATCATAACTTTTTAAGGTTTTAATTCATTTTCTTCTTCTTTTTATTATTTCTAATCGTAGTATAAATTGCGTGATTAATACGATGTCAACTTGACAATAGTCTTTCTTATTTGATAGACTAAAAAAAGGTCTAGAACATAGCATTAGATTTTGAATTATGGTACACCTCCATATTTGTTTCTGAATTTTCCTTTTCATCAAACTTTCAATTAGTTCAATTATTCAAAAAAATCTAGATCGTAACTCATTGTATGAATGA

mRNA sequence

ATGGCTGATCTGGAGCTGAAAAAGAAGAAAGAAGAAGAAGAGAAAGCTAAACAAATAGAGTTAGAAGAGACTGAAGAAATTCATGAAAAAAACGGGGATCTTCAGGAGGTAAAGACAAGACTCGATAAACTTGAGGAAACTATAAAGGAAATTGCTGTTGAATCCAGAAAACAATCAGGGATTGGTATTATGACAAAGAACTCTGAAAAGGGTCAAGACGTTGATGAAACCAAACAGGGGGAAAATATTGATCCAAGCAAGTCTACGGATGACCATCTTGGTGAACAAAAAATAGTACCGGCTCCAGTTTTGCCCAAAGGTCGTGCAAGTGAGTCTACAACACGAGAAGATGATCGTAACTCATTGTATGAATGA

Coding sequence (CDS)

ATGGCTGATCTGGAGCTGAAAAAGAAGAAAGAAGAAGAAGAGAAAGCTAAACAAATAGAGTTAGAAGAGACTGAAGAAATTCATGAAAAAAACGGGGATCTTCAGGAGGTAAAGACAAGACTCGATAAACTTGAGGAAACTATAAAGGAAATTGCTGTTGAATCCAGAAAACAATCAGGGATTGGTATTATGACAAAGAACTCTGAAAAGGGTCAAGACGTTGATGAAACCAAACAGGGGGAAAATATTGATCCAAGCAAGTCTACGGATGACCATCTTGGTGAACAAAAAATAGTACCGGCTCCAGTTTTGCCCAAAGGTCGTGCAAGTGAGTCTACAACACGAGAAGATGATCGTAACTCATTGTATGAATGA

Protein sequence

MADLELKKKKEEEEKAKQIELEETEEIHEKNGDLQEVKTRLDKLEETIKEIAVESRKQSGIGIMTKNSEKGQDVDETKQGENIDPSKSTDDHLGEQKIVPAPVLPKGRASESTTREDDRNSLYE

Homology

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BLAST of Lsi07G004090 vs. TrEMBL
Match: A0A0A0KTR7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G006500 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.5e-39
Identity = 96/119 (80.67%), Postives = 105/119 (88.24%), Query Frame = 1


Query: 2   ADLELKKKKEEEEKAKQIELEETEEIHEKNGDLQEVKTRLDKLEETIKEIAVESRKQSGI 61
           ADLELKKKKEEEEKAKQIELEETE+IHE N +LQEVKTRLDKLE TIKEIAVESRKQSG 
Sbjct: 117 ADLELKKKKEEEEKAKQIELEETEKIHEMNPELQEVKTRLDKLENTIKEIAVESRKQSGT 176

Query: 62  GIMTKNSEKGQDVDETKQGENIDPSKSTDDHLGEQKIVPAPVLPKGRASESTTREDDRN 121
           G +TKNSEKG+D  +TK G NID +KS DDHLG QKIVPAPVLPKGR SESTTR+D ++
Sbjct: 177 GNITKNSEKGEDAVKTKHGVNIDSTKSMDDHLGGQKIVPAPVLPKGRVSESTTRDDSKH 235

[Close]

BLAST of Lsi07G004090 vs. TrEMBL
Match: B9GMC6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s14760g PE=4 SV=2)

HSP 1 Score: 62.8 bits (151), Expect = 3.5e-07
Identity = 58/128 (45.31%), Postives = 73/128 (57.03%), Query Frame = 1


Query: 2   ADLELKKKKEEEEKAKQIELEETEEIHEKNGDLQEVKTRLDKLEETIKEIAVESRKQSGI 61
           A+LE KKKKEEEEKAK+ EL+  EE  +   +L EVK RL KLEE +KEIAVESRKQSG 
Sbjct: 109 AELE-KKKKEEEEKAKEEELKAIEEKAQSESELLEVKERLSKLEEVVKEIAVESRKQSGG 168

Query: 62  GIMTKNSEKGQDVDETKQGENIDPSKSTD--------DHLGEQK-IVPAPV---LPKGRA 118
            +  K ++  +D  ET +  + + S            DHL  QK + PAPV     KG+ 
Sbjct: 169 SV--KKTQVQEDSSETLKPASTEASNRISESSKSVGKDHLSIQKCLEPAPVPDSSQKGKI 228

[Close]

BLAST of Lsi07G004090 vs. TrEMBL
Match: M5W9L1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013041mg PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 6.5e-06
Identity = 51/113 (45.13%), Postives = 63/113 (55.75%), Query Frame = 1


Query: 2   ADLELKKKKEEEEKAKQ--IELEETEEIHEKNGDLQEVKTRLDKLEETIKEIAVESRKQS 61
           A+LE KKKKEEE KAK+  IEL+  EE    N +L EV+ RLDKLEET+KE  VES+KQ 
Sbjct: 3   AELEQKKKKEEEAKAKEKEIELKAAEEKEASNPELLEVRVRLDKLEETLKEFVVESKKQM 62

Query: 62  GIGIMTKNSEKGQD----VDETKQGENIDPSK--STDDHLGEQKIVPAPVLPK 107
             G  TK  E G +    V E     + + SK    D    +  + P P L K
Sbjct: 63  NSG-QTKEHEGGNEKKDIVTEASSRSSSESSKPVEKDPPSKQDSVEPGPALSK 114

[Close]

BLAST of Lsi07G004090 vs. TrEMBL
Match: B9SMU7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0471000 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 8.5e-06
Identity = 49/103 (47.57%), Postives = 69/103 (66.99%), Query Frame = 1


Query: 2   ADLELKKKKEEEEKAKQIELEETEEIHEK-NGDLQEVKTRLDKLEETIKEIAVESRKQSG 61
           A+LEL KK+EEEEKAK++E +  EE   + N +L EVK RLDKLEE +KEIAVES+KQSG
Sbjct: 108 AELEL-KKREEEEKAKEMEPKAIEEKEARSNPELLEVKVRLDKLEEAVKEIAVESKKQSG 167

Query: 62  IGIM--TKNSEKGQDVDETKQGENIDPSKSTDD----HLGEQK 98
              +   ++S K + +  TK  ++   S+S++     HL +QK
Sbjct: 168 DDALKNQEDSSKEKHIAPTKSHDSQSTSESSNSAEKAHLSKQK 209

[Close]

BLAST of Lsi07G004090 vs. NCBI nr
Match: gi|449468926|ref|XP_004152172.1| (PREDICTED: uncharacterized protein LOC101207869 [Cucumis sativus])

HSP 1 Score: 170.2 bits (430), Expect = 2.2e-39
Identity = 96/119 (80.67%), Postives = 105/119 (88.24%), Query Frame = 1


Query: 2   ADLELKKKKEEEEKAKQIELEETEEIHEKNGDLQEVKTRLDKLEETIKEIAVESRKQSGI 61
           ADLELKKKKEEEEKAKQIELEETE+IHE N +LQEVKTRLDKLE TIKEIAVESRKQSG 
Sbjct: 117 ADLELKKKKEEEEKAKQIELEETEKIHEMNPELQEVKTRLDKLENTIKEIAVESRKQSGT 176

Query: 62  GIMTKNSEKGQDVDETKQGENIDPSKSTDDHLGEQKIVPAPVLPKGRASESTTREDDRN 121
           G +TKNSEKG+D  +TK G NID +KS DDHLG QKIVPAPVLPKGR SESTTR+D ++
Sbjct: 177 GNITKNSEKGEDAVKTKHGVNIDSTKSMDDHLGGQKIVPAPVLPKGRVSESTTRDDSKH 235

[Close]

BLAST of Lsi07G004090 vs. NCBI nr
Match: gi|659108381|ref|XP_008454169.1| (PREDICTED: uncharacterized protein LOC103494654 [Cucumis melo])

HSP 1 Score: 168.7 bits (426), Expect = 6.4e-39
Identity = 96/119 (80.67%), Postives = 105/119 (88.24%), Query Frame = 1


Query: 2   ADLELKKKKEEEEKAKQIELEETEEIHEKNGDLQEVKTRLDKLEETIKEIAVESRKQSGI 61
           ADLELKKKKEEEEKAKQIELEE E+IHE N +LQEVKTRLDKLE+TIKEIAVESRKQSG 
Sbjct: 117 ADLELKKKKEEEEKAKQIELEEAEKIHEMNPELQEVKTRLDKLEKTIKEIAVESRKQSGT 176

Query: 62  GIMTKNSEKGQDVDETKQGENIDPSKSTDDHLGEQKIVPAPVLPKGRASESTTREDDRN 121
           G +TKNSEKG+D  +TK G NIDP+KS DDHLG QKIVPAPVLPK  ASESTTRED ++
Sbjct: 177 GNITKNSEKGEDAVKTKHGVNIDPTKSMDDHLGGQKIVPAPVLPKDCASESTTREDSKH 235

[Close]

BLAST of Lsi07G004090 vs. NCBI nr
Match: gi|645271282|ref|XP_008240839.1| (PREDICTED: histone-lysine N-methyltransferase, H3 lysine-79 specific-like isoform X2 [Prunus mume])

HSP 1 Score: 63.2 bits (152), Expect = 3.8e-07
Identity = 55/115 (47.83%), Postives = 69/115 (60.00%), Query Frame = 1


Query: 2   ADLELKKKKEEEEKAKQ--IELEETEEIHEKNGDLQEVKTRLDKLEETIKEIAVESRKQS 61
           A+LE KKKKEEE KAK+  IEL+  EE    N +L EV+ RLDKLEET+KEI VES+KQ 
Sbjct: 127 AELEQKKKKEEEAKAKEKEIELKAAEEKEASNPELLEVRVRLDKLEETLKEIVVESKKQM 186

Query: 62  GIGIMTKNSEKGQD----VDETKQGENIDPSKSTD-DHLGEQ-KIVPAPVLPKGR 109
             G  TK  E G++    V E     + + SK  + D L +Q  + P P L K R
Sbjct: 187 NSG-QTKEHEGGKEKKDIVTEASSRSSSESSKPVEKDPLSKQDSVEPGPALSKER 240

[Close]

BLAST of Lsi07G004090 vs. NCBI nr
Match: gi|566149007|ref|XP_002299267.2| (hypothetical protein POPTR_0001s14760g [Populus trichocarpa])

HSP 1 Score: 62.8 bits (151), Expect = 5.0e-07
Identity = 58/128 (45.31%), Postives = 73/128 (57.03%), Query Frame = 1


Query: 2   ADLELKKKKEEEEKAKQIELEETEEIHEKNGDLQEVKTRLDKLEETIKEIAVESRKQSGI 61
           A+LE KKKKEEEEKAK+ EL+  EE  +   +L EVK RL KLEE +KEIAVESRKQSG 
Sbjct: 109 AELE-KKKKEEEEKAKEEELKAIEEKAQSESELLEVKERLSKLEEVVKEIAVESRKQSGG 168

Query: 62  GIMTKNSEKGQDVDETKQGENIDPSKSTD--------DHLGEQK-IVPAPV---LPKGRA 118
            +  K ++  +D  ET +  + + S            DHL  QK + PAPV     KG+ 
Sbjct: 169 SV--KKTQVQEDSSETLKPASTEASNRISESSKSVGKDHLSIQKCLEPAPVPDSSQKGKI 228

[Close]

BLAST of Lsi07G004090 vs. NCBI nr
Match: gi|645271279|ref|XP_008240838.1| (PREDICTED: DNA ligase 1-like isoform X1 [Prunus mume])

HSP 1 Score: 61.2 bits (147), Expect = 1.4e-06
Identity = 54/114 (47.37%), Postives = 68/114 (59.65%), Query Frame = 1


Query: 3   DLELKKKKEEEEKAKQ--IELEETEEIHEKNGDLQEVKTRLDKLEETIKEIAVESRKQSG 62
           +LE KKKKEEE KAK+  IEL+  EE    N +L EV+ RLDKLEET+KEI VES+KQ  
Sbjct: 134 ELEQKKKKEEEAKAKEKEIELKAAEEKEASNPELLEVRVRLDKLEETLKEIVVESKKQMN 193

Query: 63  IGIMTKNSEKGQD----VDETKQGENIDPSKSTD-DHLGEQ-KIVPAPVLPKGR 109
            G  TK  E G++    V E     + + SK  + D L +Q  + P P L K R
Sbjct: 194 SG-QTKEHEGGKEKKDIVTEASSRSSSESSKPVEKDPLSKQDSVEPGPALSKER 246

The following BLAST results are available for this feature:

BLAST of Lsi07G004090 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi07G004090 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KTR7_CUCSA	1.5e-39	80.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G006500 PE=4 SV=1	[more]
B9GMC6_POPTR	3.5e-07	45.31	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s14760g PE=4 SV=2	[more]
M5W9L1_PRUPE	6.5e-06	45.13	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013041mg PE=4 SV=1	[more]
B9SMU7_RICCO	8.5e-06	47.57	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0471000 PE=4 SV=1	[more]

BLAST of Lsi07G004090 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi07G004090 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449468926\|ref\|XP_004152172.1\|	2.2e-39	80.67	PREDICTED: uncharacterized protein LOC101207869 [Cucumis sativus]	[more]
gi\|659108381\|ref\|XP_008454169.1\|	6.4e-39	80.67	PREDICTED: uncharacterized protein LOC103494654 [Cucumis melo]	[more]
gi\|645271282\|ref\|XP_008240839.1\|	3.8e-07	47.83	PREDICTED: histone-lysine N-methyltransferase, H3 lysine-79 specific-like isofor...	[more]
gi\|566149007\|ref\|XP_002299267.2\|	5.0e-07	45.31	hypothetical protein POPTR_0001s14760g [Populus trichocarpa]	[more]
gi\|645271279\|ref\|XP_008240838.1\|	1.4e-06	47.37	PREDICTED: DNA ligase 1-like isoform X1 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G004090.1	Lsi07G004090.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 1..54 scor
None	No IPR available	PANTHER	PTHR36339	FAMILY NOT NAMED	coord: 2..121 score: 6.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi07G004090	Csa4G006500	Cucumber (Chinese Long) v2	culsiB312
Lsi07G004090	CSPI04G02060	Wild cucumber (PI 183967)	cpilsiB311
Lsi07G004090	Cucsa.095950	Cucumber (Gy14) v1	cgylsiB113
Lsi07G004090	CmaCh14G013810	Cucurbita maxima (Rimu)	cmalsiB256
Lsi07G004090	CmaCh01G001750	Cucurbita maxima (Rimu)	cmalsiB450
Lsi07G004090	CmoCh01G001830	Cucurbita moschata (Rifu)	cmolsiB437
Lsi07G004090	CmoCh14G014190	Cucurbita moschata (Rifu)	cmolsiB244
Lsi07G004090	Cla012753	Watermelon (97103) v1	lsiwmB438
Lsi07G004090	MELO3C017835	Melon (DHL92) v3.5.1	lsimeB447
Lsi07G004090	ClCG07G012140	Watermelon (Charleston Gray)	lsiwcgB406
Lsi07G004090	MELO3C017835.2	Melon (DHL92) v3.6.1	lsimedB465
Lsi07G004090	Cla97C07G138880	Watermelon (97103) v2	lsiwmbB405
Lsi07G004090	Bhi01G002815	Wax gourd	lsiwgoB558
Lsi07G004090	Cp4.1LG03g13560	Cucurbita pepo (Zucchini)	cpelsiB516
Lsi07G004090	Cp4.1LG02g15160	Cucurbita pepo (Zucchini)	cpelsiB472
Lsi07G004090	CsGy4G001990	Cucumber (Gy14) v2	cgyblsiB285
Lsi07G004090	Carg06535	Silver-seed gourd	carlsiB109
Lsi07G004090	Carg04203	Silver-seed gourd	carlsiB182
Lsi07G004090	CsaV3_4G002020	Cucumber (Chinese Long) v3	cuclsiB331

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi07G004090	Bottle gourd (USVL1VR-Ls)	lsilsiB117
Lsi07G004090	Cucumber (Gy14) v1	cgylsiB136
Lsi07G004090	Cucurbita maxima (Rimu)	cmalsiB773
Lsi07G004090	Wild cucumber (PI 183967)	cpilsiB546
Lsi07G004090	Melon (DHL92) v3.5.1	lsimeB430
Lsi07G004090	Watermelon (Charleston Gray)	lsiwcgB387
Lsi07G004090	Watermelon (97103) v2	lsiwmbB420