Lsi07G001970 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi07G001970
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Cytosolic iron-sulfur protein assembly protein 2
Location	chr07 : 2139601 .. 2142230 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTGGCGCTTTCTTTGTGACCGAGCGGGTAATTTTTTGGATGATTCTGTGGAAATTGAGTTTTCTCGTAACTTTTCGAATCTGGTATTTGATTGTCAATTTGCAAATTTCTTGTCCTTGACTCTAATTTTGACACATTTCGTGAGGGATATTAGAGATCCGGAGCATCCTTATTCGTTAGAGCAGCTTAGTGTTCTCTCGGAGGAATCGATCACCGTCGATGAGAAGCTAGGGCGTATCCTGTAAGCACAACCGAAACTACTCCATTACTTCTCTGCCTCTTTGATTTTGAGAGACAATCTGAGATTATTTATTTATAATCATATTGCTTTAACAAACACATTTTCACAGATTTCTAGTGTAGTTTGATTGAACTGCCTTAAGCTTCGAATTCCTAAATTGTTTGCTGAATTAGTGTTTATCTCACAGGATTACTTTCACTCCGACTATTCAGCATTGTAGTATGGCTACTGTGATTGGACTCTGTCTGAGAGTGAAACTTAAACATTTCTTTCCCCCACATTACAAGGTCAGTTCACATTCCTTAGCAATAGACTTGAAACTTTGGAGTACTGTTTGTCCAATTTCAGTTCTCCACTCTACTTGATGCAATGCAATCACCAGATACTGATGGAATTCGTGGCTTCTAAATTTATCTTCTCTGAATTCTCAGGGTTATATCAAATAGGTGCCTGAACTTTGAAAATTTTCCTCGAATCTATTAACTCCTCAAATTTTTTCGATTTTGTGTGTAGGTCCTTAATCAACCTTTTTTTAATTTACGAACCTATCGAACATAAAGTTGTAAGTTTATTGACTTAATAGATATAAAATAAATCTTAATAGATTGGTAAATTTTAAAAAATTATTGAATTACTAAAGATCTCTTAGACATATAATTGAAAGTTCAATGATGGACACCTATTAAACAAAATTTAGAGACTTATAACTGCAAACCTGGGGTCTAAATCTTTAACCTAGCATATAGTTTGATGAAGTTGGTTAGTTTTTGAAGGAAACGATCATGATCATAGTGCCTTTGGGTTTCATTTCACTTGTAAAGACTGTTTGGGTGTAACTTTTAGGTAATGTCTTTTGGGGCTTCTTTGATAAACTTGATGGATTATATCAGGTAATCATTTAACAAAACTAAGGAGAAGCTTATTATTCAAGAAAATAAGTTGTTCATGGAAGGAAAGAAATTTTTTTTTTTTAAAAAAAAGACTATCCACCTATGTTTTAGAAATTTTTTTAAAAAAATAATTTTGAGACCAATTCCAGAAATACTATTTTAATTATTTATTTTTTAATTTTGGAACTTATTTAGAAAGATATCTCTTGGTATTGCTTTTCATTGAAGTTAAACCTAAAATAATTAACAATTTTTTTTTATAAACAATTAATTTAGACAATATAAAAAAACGAAAAACATAAAAGGTTCTTATTCTTTTATTTTAAATTTAACACCTTATTAACATTCTTATTGGAAAAAAAACTATTTTTTTTTGGAAAATTTTCACAGATAGAATAAATGTCAAACTATTTACAGACAATAGCAAAAAAAACACTGATAGACATTGATAGACTTCTATCAGCATCAATCAGTGATAGACTGTTATCATTTCTATCACTGATAGATACTGATATACTTCTATTAGCGTTAGGGATGGCAACGGGGCGGGGGTCGGGGTCGGGGAATCCCCGTTCGGGGATTCGGGTCCCCACGGGGAAAAATCCCCGTTTATGTTTTTTTTTTTTTTAATTTTTATTATTTGAAAGTTAGAATTTATATTGAAATTAGAAATATTTTAATACTTTTTATTATAAATTTAATAAAAAAATTAAATTTATTATATTTAAAAATTAAAATTAAAAACAAAAACTAACTAAAACAGTTTTAGTAGTTTATATATATATATATATATATATAATTAAAAAAAATTAGTATTTTTTTATTTTATATATAAATATATAAATAAATAATTAAAAAAAATCGGGGCGGGAGTCGGGTTCAGGGGCGGGGCGGGGATCCCCTCCCCGTCCCCGACCGGGGACCCGATCCCGCGGGGAATTTTGCCATCCCTAATTAGCGTCTATCACAACTATCTACAAATTTTTCTATTTTGTGTAAATAGTTTTTCTCATTTTTCTATTTTTAAAAACTTCCTTTTTTTTTCCTTTAAAAAAACATATATATATATACACACATTAAAAAGAAACAATCTCTGTAGCTTAGTTTCTGCAGAGAACAAGTTCTATGACTAATTTGTGAGTTTTGTTGTTACAACAAGTGACAAAAAAAAAAAATTGAACCATCTACCCAATTCAAATGAATTCCTGTAGACTCCTGTTAAATATTCATTTAATTTCCTGTTTGAATATATATGATGGAAATAGGCTGAATTACTTTATTATATTTACACTCAGATGCATTTCATTTCCCCATCTTAATCTCGTTGTCTTCAAAGTGCCTTAGGTGATCTGATGATATTCATATAACCATGAAATGAATTTGAACAATTTGATTGTAGCTCGAGTTTTGCTTGTCATGGATTTTGCAGGTTGACATCAAAGTGTCTCCAGGATCCCACGCAAATGAAGACTCAGGTGAGATTAAAACATTCTAA

mRNA sequence

ATGTTCTGGCGCTTTCTTTGTGACCGAGCGGGTAATTTTTTGGATGATTCTGTGGAAATTGAGTTTTCTCGTAACTTTTCGAATCTGGTATTTGATTGTCAATTTGCAAATTTCTTGTCCTTGACTCTAATTTTGACACATTTCGTGAGGGATATTAGAGATCCGGAGCATCCTTATTCGTTAGAGCAGCTTAGTGTTCTCTCGGAGGAATCGATCACCGTCGATGAGAAGCTAGGGCGTATCCTGATTACTTTCACTCCGACTATTCAGCATTGTAGTATGGCTACTGTGATTGGACTCTGTCTGAGAGTGAAACTTAAACATTTCTTTCCCCCACATTACAAGGTTGACATCAAAGTGTCTCCAGGATCCCACGCAAATGAAGACTCAGGTGAGATTAAAACATTCTAA

Coding sequence (CDS)

ATGTTCTGGCGCTTTCTTTGTGACCGAGCGGGTAATTTTTTGGATGATTCTGTGGAAATTGAGTTTTCTCGTAACTTTTCGAATCTGGTATTTGATTGTCAATTTGCAAATTTCTTGTCCTTGACTCTAATTTTGACACATTTCGTGAGGGATATTAGAGATCCGGAGCATCCTTATTCGTTAGAGCAGCTTAGTGTTCTCTCGGAGGAATCGATCACCGTCGATGAGAAGCTAGGGCGTATCCTGATTACTTTCACTCCGACTATTCAGCATTGTAGTATGGCTACTGTGATTGGACTCTGTCTGAGAGTGAAACTTAAACATTTCTTTCCCCCACATTACAAGGTTGACATCAAAGTGTCTCCAGGATCCCACGCAAATGAAGACTCAGGTGAGATTAAAACATTCTAA

Protein sequence

MFWRFLCDRAGNFLDDSVEIEFSRNFSNLVFDCQFANFLSLTLILTHFVRDIRDPEHPYSLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMATVIGLCLRVKLKHFFPPHYKVDIKVSPGSHANEDSGEIKTF

Homology

[Close]

BLAST of Lsi07G001970 vs. Swiss-Prot
Match: AEL1_ARATH (Protein AE7-like 1 OS=Arabidopsis thaliana GN=AEL1 PE=3 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.4e-31
Identity = 65/83 (78.31%), Postives = 73/83 (87.95%), Query Frame = 1


Query: 48  FVRDIRDPEHPYSLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMATVIGLCLRVKLK 107
           +VRDIRDPEHPY+LEQL V+SEES+TVD+KL RILITFTPTIQHCSMA +IGLCLR KLK
Sbjct: 39  YVRDIRDPEHPYTLEQLRVVSEESVTVDDKLDRILITFTPTIQHCSMANIIGLCLRAKLK 98

Query: 108 HFFPPHYKVDIKVSPGSHANEDS 131
                HYKVDI+VSPGSHA+E S
Sbjct: 99  ECLQLHYKVDIRVSPGSHADEVS 121

[Close]

BLAST of Lsi07G001970 vs. Swiss-Prot
Match: AE7_ARATH (Protein AE7 OS=Arabidopsis thaliana GN=AE7 PE=1 SV=2)

HSP 1 Score: 114.8 bits (286), Expect = 7.5e-25
Identity = 49/82 (59.76%), Postives = 67/82 (81.71%), Query Frame = 1


Query: 49  VRDIRDPEHPYSLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMATVIGLCLRVKLKH 108
           +RDI+DPEHP +LE L V++E+S+ VD++   + +TFTPT++HCSMATVIGLC+RVKL  
Sbjct: 44  IRDIKDPEHPNTLEDLRVVTEDSVEVDDENSYVRVTFTPTVEHCSMATVIGLCVRVKLLR 103

Query: 109 FFPPHYKVDIKVSPGSHANEDS 131
             P  YK+DI+V+PGSHA ED+
Sbjct: 104 SLPSRYKIDIRVAPGSHATEDA 125

[Close]

BLAST of Lsi07G001970 vs. Swiss-Prot
Match: U195_CAEEL (MIP18 family protein F45G2.10 OS=Caenorhabditis elegans GN=F45G2.10 PE=1 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 7.3e-20
Identity = 47/84 (55.95%), Postives = 61/84 (72.62%), Query Frame = 1


Query: 49  VRDIRDPEHPYSLEQLSVLSEESITV--DEKLGRILITFTPTIQHCSMATVIGLCLRVKL 108
           +RDI DPEHPY+LEQL+V+ EE I V  DE+   + + FTPTI HCSMAT+IGL +RVKL
Sbjct: 45  IRDINDPEHPYTLEQLNVVQEELIKVFIDEEETFVKVNFTPTIPHCSMATLIGLAIRVKL 104

Query: 109 KHFFPPHYKVDIKVSPGSHANEDS 131
                P  KV + ++PGSH+ E+S
Sbjct: 105 LRSLHPKVKVSVSITPGSHSTEES 128

[Close]

BLAST of Lsi07G001970 vs. Swiss-Prot
Match: AEL2_ARATH (Protein AE7-like 2 OS=Arabidopsis thaliana GN=AEL2 PE=2 SV=2)

HSP 1 Score: 97.4 bits (241), Expect = 1.2e-19
Identity = 46/84 (54.76%), Postives = 61/84 (72.62%), Query Frame = 1


Query: 46  THFVRDIRDPEHP-YSLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMATVIGLCLRV 105
           T+ +RDI+DPEHP  SLE L+VL+EES+ VD+    + ITFTPT+ HC + T IGLC+ V
Sbjct: 33  TNRIRDIKDPEHPELSLEDLNVLTEESVEVDDHKSYVRITFTPTLPHCHLPTHIGLCILV 92

Query: 106 KLKHFFPPHYKVDIKVSPGSHANE 129
           KL    P  +KVD++V+PGSH  E
Sbjct: 93  KLVQSLPARFKVDVRVAPGSHDKE 116

[Close]

BLAST of Lsi07G001970 vs. Swiss-Prot
Match: U195A_DROME (MIP18 family protein CG7949 OS=Drosophila melanogaster GN=CG7949 PE=1 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.1e-19
Identity = 41/80 (51.25%), Postives = 61/80 (76.25%), Query Frame = 1


Query: 49  VRDIRDPEHPYSLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMATVIGLCLRVKLKH 108
           +R+I DPEHP +LE+L V+ E+ I +++    + I+FTPTI HCSMAT+IGL +RVKL  
Sbjct: 43  IRNINDPEHPLTLEELHVVQEDLIRINDSQNSVHISFTPTIPHCSMATLIGLSIRVKLLR 102

Query: 109 FFPPHYKVDIKVSPGSHANE 129
             PP +KV ++++PG+HA+E
Sbjct: 103 SLPPRFKVTVEITPGTHASE 122

[Close]

BLAST of Lsi07G001970 vs. TrEMBL
Match: I1J8W2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_01G175900 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.2e-40
Identity = 89/115 (77.39%), Postives = 98/115 (85.22%), Query Frame = 1


Query: 16  DSVEIEFSRNFSNLVFDCQFANFLSLTLILTHFVRDIRDPEHPYSLEQLSVLSEESITVD 75
           D  +I F  +FS L    Q    + L L LT+FVRDIRDPEHPYSLEQLSVLSEESI+VD
Sbjct: 35  DIYDILFFFSFSLLPLPTQLTVEI-LDLALTNFVRDIRDPEHPYSLEQLSVLSEESISVD 94

Query: 76  EKLGRILITFTPTIQHCSMATVIGLCLRVKLKHFFPPHYKVDIKVSPGSHANEDS 131
           +KLGRILITFTPT+QHCSMATVIGLCLRVKLKH+FPPHYKVDIKVSPGSHANE+S
Sbjct: 95  DKLGRILITFTPTVQHCSMATVIGLCLRVKLKHYFPPHYKVDIKVSPGSHANEES 148

[Close]

BLAST of Lsi07G001970 vs. TrEMBL
Match: A0A0B2RUL4_GLYSO (MIP18 family protein OS=Glycine soja GN=glysoja_003251 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 2.6e-40
Identity = 82/90 (91.11%), Postives = 88/90 (97.78%), Query Frame = 1


Query: 41  LTLILTHFVRDIRDPEHPYSLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMATVIGL 100
           L L LT+FVRDIRDPEHPYSLEQLSVLSEESI+VD+KLGRILITFTPT+QHCSMATVIGL
Sbjct: 60  LDLALTNFVRDIRDPEHPYSLEQLSVLSEESISVDDKLGRILITFTPTVQHCSMATVIGL 119

Query: 101 CLRVKLKHFFPPHYKVDIKVSPGSHANEDS 131
           CLRVKLKH+FPPHYKVDIKVSPGSHANE+S
Sbjct: 120 CLRVKLKHYFPPHYKVDIKVSPGSHANEES 149

[Close]

BLAST of Lsi07G001970 vs. TrEMBL
Match: A0A0A0KUM2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G038660 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 3.4e-40
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1


Query: 48  FVRDIRDPEHPYSLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMATVIGLCLRVKLK 107
           FVRDIRDPEHPYSLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMATVIGLCLRVKLK
Sbjct: 39  FVRDIRDPEHPYSLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMATVIGLCLRVKLK 98

Query: 108 HFFPPHYKVDIKVSPGSHANEDS 131
           HFFPPHYKVDIKVSPGSHANEDS
Sbjct: 99  HFFPPHYKVDIKVSPGSHANEDS 121

[Close]

BLAST of Lsi07G001970 vs. TrEMBL
Match: I1LHS1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_11G068200 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 9.9e-40
Identity = 81/90 (90.00%), Postives = 88/90 (97.78%), Query Frame = 1


Query: 41  LTLILTHFVRDIRDPEHPYSLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMATVIGL 100
           L L LT+FVRDIRDPEHPYSLEQLSVLSEESITVD+KLGRILITFTPT+QHCSMATVIGL
Sbjct: 32  LDLALTNFVRDIRDPEHPYSLEQLSVLSEESITVDDKLGRILITFTPTVQHCSMATVIGL 91

Query: 101 CLRVKLKHFFPPHYKVDIKVSPGSHANEDS 131
           CLRVKLKH+FPPH+KVDIKVSPGSHA+E+S
Sbjct: 92  CLRVKLKHYFPPHFKVDIKVSPGSHADEES 121

[Close]

BLAST of Lsi07G001970 vs. TrEMBL
Match: C6T191_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.9e-38
Identity = 78/83 (93.98%), Postives = 83/83 (100.00%), Query Frame = 1


Query: 48  FVRDIRDPEHPYSLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMATVIGLCLRVKLK 107
           FVRDIRDPEHPYSLEQLSVLSEESI+VD+KLGRILITFTPT+QHCSMATVIGLCLRVKLK
Sbjct: 39  FVRDIRDPEHPYSLEQLSVLSEESISVDDKLGRILITFTPTVQHCSMATVIGLCLRVKLK 98

Query: 108 HFFPPHYKVDIKVSPGSHANEDS 131
           H+FPPHYKVDIKVSPGSHANE+S
Sbjct: 99  HYFPPHYKVDIKVSPGSHANEES 121

[Close]

BLAST of Lsi07G001970 vs. TAIR10
Match: AT3G50845.1 (AT3G50845.1 Protein of unknown function (DUF59))

HSP 1 Score: 137.1 bits (344), Expect = 8.0e-33
Identity = 65/83 (78.31%), Postives = 73/83 (87.95%), Query Frame = 1


Query: 48  FVRDIRDPEHPYSLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMATVIGLCLRVKLK 107
           +VRDIRDPEHPY+LEQL V+SEES+TVD+KL RILITFTPTIQHCSMA +IGLCLR KLK
Sbjct: 39  YVRDIRDPEHPYTLEQLRVVSEESVTVDDKLDRILITFTPTIQHCSMANIIGLCLRAKLK 98

Query: 108 HFFPPHYKVDIKVSPGSHANEDS 131
                HYKVDI+VSPGSHA+E S
Sbjct: 99  ECLQLHYKVDIRVSPGSHADEVS 121

[Close]

BLAST of Lsi07G001970 vs. TAIR10
Match: AT1G68310.1 (AT1G68310.1 Protein of unknown function (DUF59))

HSP 1 Score: 109.4 bits (272), Expect = 1.8e-24
Identity = 47/80 (58.75%), Postives = 65/80 (81.25%), Query Frame = 1


Query: 51  DIRDPEHPYSLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMATVIGLCLRVKLKHFF 110
           +I+DPEHP +LE L V++E+S+ VD++   + +TFTPT++HCSMATVIGLC+RVKL    
Sbjct: 48  NIKDPEHPNTLEDLRVVTEDSVEVDDENSYVRVTFTPTVEHCSMATVIGLCVRVKLLRSL 107

Query: 111 PPHYKVDIKVSPGSHANEDS 131
           P  YK+DI+V+PGSHA ED+
Sbjct: 108 PSRYKIDIRVAPGSHATEDA 127

[Close]

BLAST of Lsi07G001970 vs. TAIR10
Match: AT3G09380.1 (AT3G09380.1 Protein of unknown function (DUF59))

HSP 1 Score: 97.4 bits (241), Expect = 7.0e-21
Identity = 46/84 (54.76%), Postives = 61/84 (72.62%), Query Frame = 1


Query: 46  THFVRDIRDPEHP-YSLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMATVIGLCLRV 105
           T+ +RDI+DPEHP  SLE L+VL+EES+ VD+    + ITFTPT+ HC + T IGLC+ V
Sbjct: 40  TNRIRDIKDPEHPELSLEDLNVLTEESVEVDDHKSYVRITFTPTLPHCHLPTHIGLCILV 99

Query: 106 KLKHFFPPHYKVDIKVSPGSHANE 129
           KL    P  +KVD++V+PGSH  E
Sbjct: 100 KLVQSLPARFKVDVRVAPGSHDKE 123

[Close]

BLAST of Lsi07G001970 vs. NCBI nr
Match: gi|947128966|gb|KRH76820.1| (hypothetical protein GLYMA_01G175900 [Glycine max])

HSP 1 Score: 174.1 bits (440), Expect = 1.7e-40
Identity = 89/115 (77.39%), Postives = 98/115 (85.22%), Query Frame = 1


Query: 16  DSVEIEFSRNFSNLVFDCQFANFLSLTLILTHFVRDIRDPEHPYSLEQLSVLSEESITVD 75
           D  +I F  +FS L    Q    + L L LT+FVRDIRDPEHPYSLEQLSVLSEESI+VD
Sbjct: 35  DIYDILFFFSFSLLPLPTQLTVEI-LDLALTNFVRDIRDPEHPYSLEQLSVLSEESISVD 94

Query: 76  EKLGRILITFTPTIQHCSMATVIGLCLRVKLKHFFPPHYKVDIKVSPGSHANEDS 131
           +KLGRILITFTPT+QHCSMATVIGLCLRVKLKH+FPPHYKVDIKVSPGSHANE+S
Sbjct: 95  DKLGRILITFTPTVQHCSMATVIGLCLRVKLKHYFPPHYKVDIKVSPGSHANEES 148

[Close]

BLAST of Lsi07G001970 vs. NCBI nr
Match: gi|734411742|gb|KHN36128.1| (MIP18 family protein [Glycine soja])

HSP 1 Score: 172.9 bits (437), Expect = 3.7e-40
Identity = 82/90 (91.11%), Postives = 88/90 (97.78%), Query Frame = 1


Query: 41  LTLILTHFVRDIRDPEHPYSLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMATVIGL 100
           L L LT+FVRDIRDPEHPYSLEQLSVLSEESI+VD+KLGRILITFTPT+QHCSMATVIGL
Sbjct: 60  LDLALTNFVRDIRDPEHPYSLEQLSVLSEESISVDDKLGRILITFTPTVQHCSMATVIGL 119

Query: 101 CLRVKLKHFFPPHYKVDIKVSPGSHANEDS 131
           CLRVKLKH+FPPHYKVDIKVSPGSHANE+S
Sbjct: 120 CLRVKLKHYFPPHYKVDIKVSPGSHANEES 149

[Close]

BLAST of Lsi07G001970 vs. NCBI nr
Match: gi|449462848|ref|XP_004149152.1| (PREDICTED: MIP18 family protein At1g68310 [Cucumis sativus])

HSP 1 Score: 172.6 bits (436), Expect = 4.9e-40
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1


Query: 48  FVRDIRDPEHPYSLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMATVIGLCLRVKLK 107
           FVRDIRDPEHPYSLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMATVIGLCLRVKLK
Sbjct: 39  FVRDIRDPEHPYSLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMATVIGLCLRVKLK 98

Query: 108 HFFPPHYKVDIKVSPGSHANEDS 131
           HFFPPHYKVDIKVSPGSHANEDS
Sbjct: 99  HFFPPHYKVDIKVSPGSHANEDS 121

[Close]

BLAST of Lsi07G001970 vs. NCBI nr
Match: gi|947079882|gb|KRH28671.1| (hypothetical protein GLYMA_11G068200 [Glycine max])

HSP 1 Score: 171.0 bits (432), Expect = 1.4e-39
Identity = 81/90 (90.00%), Postives = 88/90 (97.78%), Query Frame = 1


Query: 41  LTLILTHFVRDIRDPEHPYSLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMATVIGL 100
           L L LT+FVRDIRDPEHPYSLEQLSVLSEESITVD+KLGRILITFTPT+QHCSMATVIGL
Sbjct: 32  LDLALTNFVRDIRDPEHPYSLEQLSVLSEESITVDDKLGRILITFTPTVQHCSMATVIGL 91

Query: 101 CLRVKLKHFFPPHYKVDIKVSPGSHANEDS 131
           CLRVKLKH+FPPH+KVDIKVSPGSHA+E+S
Sbjct: 92  CLRVKLKHYFPPHFKVDIKVSPGSHADEES 121

[Close]

BLAST of Lsi07G001970 vs. NCBI nr
Match: gi|1009144672|ref|XP_015889928.1| (PREDICTED: protein AE7-like 1 [Ziziphus jujuba])

HSP 1 Score: 168.7 bits (426), Expect = 7.0e-39
Identity = 80/83 (96.39%), Postives = 83/83 (100.00%), Query Frame = 1


Query: 48  FVRDIRDPEHPYSLEQLSVLSEESITVDEKLGRILITFTPTIQHCSMATVIGLCLRVKLK 107
           FVRDIRDPEHPYSLEQLSVLSEESITVD+KLGRILITFTPTIQHCSMATVIGLCLRVKLK
Sbjct: 39  FVRDIRDPEHPYSLEQLSVLSEESITVDDKLGRILITFTPTIQHCSMATVIGLCLRVKLK 98

Query: 108 HFFPPHYKVDIKVSPGSHANEDS 131
           H+FPPHYKVDIKVSPGSHANE+S
Sbjct: 99  HYFPPHYKVDIKVSPGSHANEES 121

The following BLAST results are available for this feature:

BLAST of Lsi07G001970 vs. Swiss-Prot


Match Name	E-value	Identity	Description
AEL1_ARATH	1.4e-31	78.31	Protein AE7-like 1 OS=Arabidopsis thaliana GN=AEL1 PE=3 SV=1	[more]
AE7_ARATH	7.5e-25	59.76	Protein AE7 OS=Arabidopsis thaliana GN=AE7 PE=1 SV=2	[more]
U195_CAEEL	7.3e-20	55.95	MIP18 family protein F45G2.10 OS=Caenorhabditis elegans GN=F45G2.10 PE=1 SV=1	[more]
AEL2_ARATH	1.2e-19	54.76	Protein AE7-like 2 OS=Arabidopsis thaliana GN=AEL2 PE=2 SV=2	[more]
U195A_DROME	2.1e-19	51.25	MIP18 family protein CG7949 OS=Drosophila melanogaster GN=CG7949 PE=1 SV=1	[more]

BLAST of Lsi07G001970 vs. TrEMBL


Match Name	E-value	Identity	Description
I1J8W2_SOYBN	1.2e-40	77.39	Uncharacterized protein OS=Glycine max GN=GLYMA_01G175900 PE=4 SV=1	[more]
A0A0B2RUL4_GLYSO	2.6e-40	91.11	MIP18 family protein OS=Glycine soja GN=glysoja_003251 PE=4 SV=1	[more]
A0A0A0KUM2_CUCSA	3.4e-40	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G038660 PE=4 SV=1	[more]
I1LHS1_SOYBN	9.9e-40	90.00	Uncharacterized protein OS=Glycine max GN=GLYMA_11G068200 PE=4 SV=1	[more]
C6T191_SOYBN	1.9e-38	93.98	Putative uncharacterized protein OS=Glycine max PE=2 SV=1	[more]

BLAST of Lsi07G001970 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G50845.1	8.0e-33	78.31	Protein of unknown function (DUF59)	[more]
AT1G68310.1	1.8e-24	58.75	Protein of unknown function (DUF59)	[more]
AT3G09380.1	7.0e-21	54.76	Protein of unknown function (DUF59)	[more]

BLAST of Lsi07G001970 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|947128966\|gb\|KRH76820.1\|	1.7e-40	77.39	hypothetical protein GLYMA_01G175900 [Glycine max]	[more]
gi\|734411742\|gb\|KHN36128.1\|	3.7e-40	91.11	MIP18 family protein [Glycine soja]	[more]
gi\|449462848\|ref\|XP_004149152.1\|	4.9e-40	100.00	PREDICTED: MIP18 family protein At1g68310 [Cucumis sativus]	[more]
gi\|947079882\|gb\|KRH28671.1\|	1.4e-39	90.00	hypothetical protein GLYMA_11G068200 [Glycine max]	[more]
gi\|1009144672\|ref\|XP_015889928.1\|	7.0e-39	96.39	PREDICTED: protein AE7-like 1 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002744	MIP18-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007059	chromosome segregation
biological_process	GO:0016226	iron-sulfur cluster assembly
biological_process	GO:0008150	biological_process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G001970.1	Lsi07G001970.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002744	Domain of unknown function DUF59	PFAM	PF01883	DUF59	coord: 50..109 score: 1.
None	No IPR available	PANTHER	PTHR12377	UNCHARACTERIZED	coord: 43..130 score: 3.4
None	No IPR available	PANTHER	PTHR12377:SF3	SUBFAMILY NOT NAMED	coord: 43..130 score: 3.4
None	No IPR available	unknown	SSF117916	Fe-S cluster assembly (FSCA) domain-like	coord: 48..129 score: 5.23

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi07G001970	Csa4G038660	Cucumber (Chinese Long) v2	culsiB303
Lsi07G001970	CSPI04G04930	Wild cucumber (PI 183967)	cpilsiB303
Lsi07G001970	Cucsa.201420	Cucumber (Gy14) v1	cgylsiB344
Lsi07G001970	CmaCh04G007860	Cucurbita maxima (Rimu)	cmalsiB698
Lsi07G001970	CmaCh16G006610	Cucurbita maxima (Rimu)	cmalsiB326
Lsi07G001970	CmoCh04G008420	Cucurbita moschata (Rifu)	cmolsiB692
Lsi07G001970	CmoCh16G007180	Cucurbita moschata (Rifu)	cmolsiB315
Lsi07G001970	Cla014513	Watermelon (97103) v1	lsiwmB439
Lsi07G001970	MELO3C017563	Melon (DHL92) v3.5.1	lsimeB454
Lsi07G001970	ClCG07G009210	Watermelon (Charleston Gray)	lsiwcgB413
Lsi07G001970	MELO3C017563.2	Melon (DHL92) v3.6.1	lsimedB471
Lsi07G001970	Cla97C07G136100	Watermelon (97103) v2	lsiwmbB412
Lsi07G001970	Bhi01G001905	Wax gourd	lsiwgoB555
Lsi07G001970	Cp4.1LG01g09530	Cucurbita pepo (Zucchini)	cpelsiB377
Lsi07G001970	Cp4.1LG14g01470	Cucurbita pepo (Zucchini)	cpelsiB185
Lsi07G001970	Carg14182	Silver-seed gourd	carlsiB859
Lsi07G001970	Carg05777	Silver-seed gourd	carlsiB935

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi07G001970	Cucurbita pepo (Zucchini)	cpelsiB407
Lsi07G001970	Watermelon (97103) v1	lsiwmB452
Lsi07G001970	Cucumber (Gy14) v2	cgyblsiB277
Lsi07G001970	Melon (DHL92) v3.6.1	lsimedB448
Lsi07G001970	Cucumber (Chinese Long) v3	cuclsiB322
Lsi07G001970	Watermelon (97103) v2	lsiwmbB389