Lsi07G001080 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi07G001080
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Rho gtpase-activating protein
Location	chr07 : 1214699 .. 1219523 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTAAAAGAGTTTTGGCCTTTGAGAGACATTCTGTTCTTCAGCTTCTGCAGGCTGAGCGCGTTTTGGCTTTTCGGAATCGGTGGGTTCATGTACGATTTTCTTCTCTTCTTCGGGTTTCTCGAGAAAATTCTTGTGCGATTCTAGGGATTTTTCTGCTTTAATGGTATTCGATCACGACTGCCAGTCATAATTCTATACAGGTAGAAATTTCATTATGTTTGATCAATATAAACAACTGTGATTGATTATCGTTAGTTTCTTTTTTTTTTTTTTTTCCAGAGTTCGTGGGATTTAGTTGATGCTATTGCTAGTTATTCTGCTACTCTCTGATTCTTTTCTTTTGTATTCTACTGTCAGAAAATTTAGCAGAGAATTAGACTTCTTGTTAAATTTGTGATGATAATTGGATGATCTTGTTGGGTAGTCAGTTATAGTTATGGCCGAGTTGTGTTTTCCACTGAAAACGGATTGGTCCTTGATTTCTGTCACGGATATGACTACCTTGTTTGTAATATCAATTTTACTGAGATGAGCAAATAAGTGAAATGTAAACAGTTTTGGCGGATGGCTAAATTAGATTTCCCTCTGATTTTTTTTCCAGAAAGGATATCAAATGAAACATAACCGAGATCATTGAGATAATTGATGATTATGTATAACTGAAAATGGGTTGAATTATAGTAATTAAATTTTAGTCGATGGATTCCGGATTCCTTCTCAATTGGAGATCCTATTGAACTGAATTGAATAGTTGCAAGGGATAGTATTTATCGATTCGAAGTCTGGTTGAACTTTTACTGGCTTATCTTTGACTTAGTACATCATTTGATAATATTACTAGCTAGCTGCAATTATTTTTTACTTTGATGCGCATTGTTCTGTAACAGGGTTAATCAATACATATCTTTAAACTGAGTCTGGTTTCATAGTTGGTTCAATGCCTTCTGTTAACTCTTCACAGTGGCAGGAGAAGGCTACTGGTTTTTTTTCTTCATCAGGTACTCTTTTCAGTATATAAATGAAGATGTTTTGTTATTCGCTCTCTTGCAGTTCTAATTGTCATGTTTTCCATCCAATAACGATACATTGCAGGAGTAAAGCTGAAAGAAGCTGGACATTCAGCTGGAACTTTTGTTGAGGGAGTTGCAAAGGATGCAAAAGGAAATGCTGCTGATGTGGCTGAACGGGTTGGTTCTTTGTTCAAGAGTCGATGGGCACTCCTCCAGCAGCCAGCTACAAGACATGCTGTGCAAGAACGTCTAATATCTGCTGCTGCTACTACTGGCACATTCTTCAGAAAAGGTGTGTCAGAGACAAAGGACAAGGTTGTCGTGGGGAAAGTTAAAGTTGAAGAGGTAATTTTGGTGAAACTTTTCTATTGTTTCTGTATATTTCTTCGCAGATAATTACCTTACATTTCCAACTTGTGTATGTTTTTTAGGTTGCAAAAAAGACTGCACAAAAGAGCAAGACAATTTTGACAGATATTGAACGATGGCAGAAGGTAATCGTTCTTCTATACAGTTCCCATCTCTTTATATATTATACCTGAATTTTAACTCCTGTTTAATTATGCAGGGGGTTGCCAGTACTGATGGTAAGTTACTGAATTTTTTCCATTTGGTTTATTTAATGTTATTGAGTATTCTACACGTTTGAGCTCTCTGCAAAATCTTCTTGCTTGGTTCTACTCTGTATTATTGTTTTATTATGAACTGTAGTATTCGGAGTTCCAATTGAGGTAACTGTACAAAGGCAACAGTCAAGCAGGGTTATTCCACATATTTTGGTTAGGTGTGCCGATTATCTCGTCTTGTCAGGTACTGGATTTCCCAATTACACTACATCCCTACCTTTATACATGTAATTTTTTGCATGCAACTAAACTTCCATTTAACATCTGCCTTTGCTTACTCTTAATTTTTATTTTTAGGGTTAAACTCGCCATCATTGTTCAAATCTGACGGAGATAAAAAGGTTCTTCAGCAGTTGGTGTCAATGTATAACCAAGGTAAAGGAAGTATTTTATATGATTAAGTTTGGTCTTTAATGATATACTTTGAGTAACTTCAAAATGTGTGTTGGATAATGGATATACATTTTTCAGATCCCAATGCCCCCTTACCTGAGGGTACGAATCCAGTTGATGTAGCAGCTCTAGCTAAATGTTACCTGGCCAGTCTTCCCGAGCCACTAGTCACGTTTGAGCTTTATAATGAGATCAGGGGTGCTCGTACAAGCATAAATTCCCTACGAAACATTTTTAAGAAACTTCCAAACGTGAACTACATGACCTTGGAGTTTACTACTGCCCTACTTCTCCGCATTAGCCAAAAAGCACTGCTCAATAAGGCAGGGACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTGTGCAAGCTTACCTGTTTGTCCACTCTCGTTTATCTAGCTATGCTACTCTACTCAGCATCAAAGCACTATGTAGATTTTAGATAGAAAAGCTTTCATGCAAGGCTGCAAATTTTATATATTTCACAAAAATGATGTGAGTACTTGTTAGTGTTACAGATTACTAGGATACTAGTAAGGGGTATTATGAGTAGTTAACAAGTGGTGTCTTAGTTATAAATAAGAGGAGTTGAGAACCTTAAGGGAGGGGGATCATTTTGGTATTGTGGGACTTTGGAAGAGAGTAGCCCTCTCGAAAGGCTATTATATTGTAATATAGTCATTGATATTGCAATATAGTTATTTTTAGTGTTTACTTGTATTTTTGGTATTTGGATATCTAACAAATGACTTTTTATTGCAACATTGCAACCTCTATAGTTATGGTCTGGAAGCTGATGATGTCATGTGCCTCTATTTCACATTGTAAGAAGCAGCCTTCAGGAATATAAAAATTTTGGTGCTAGCCAAGATTTTGTGTTCCAGAACCTTTCTTGTGATGAGGATGATATAATGTCATGTATGCCCACTGATGTATGGCTTTGATGTTTGGGGAGTTTTGGTTATTATTTTCCGTATTGTACTTCCATTTAGATGATATGTATGCTTTTAGCTATTGCTAACTTCTTTCTGACGTGTAATTGCTAATTTTCTGCCCTGAAAATTTGACCCCTTTCTTTGGCTAACTTTTAAAGTCATTAATCTTCCAATGTCCTTAAACATGTTCTTAGTTGTGTTGCTAATCTCTATGTTCTTTCAATAGATGGATGCTCGTAGCCTTTCTATGGAGATGACTCCTATAATAATGTGGCAAAACGACAGGCGACCAGAGTTCTATCGGGAATATTGGGATTATCATTCTAAAAGCTCTTCTGCAAAGTCTTTAAATAATACACCACCTACTTACAGTGCATGGGACATGCTTTCAGGTGACTAGGCCAATCCTTTCTGTTTATTGCTTGCTATACTTTAATTTAGTGCCACATAATTGGAAATGGATCTCGATTTTTCCTCTTTTGGAATGGAAATTTCAATCGCAAGCTTTGGAACGAGAACCATAGTGATCAGTTATATTTTCCATTTACGCTTTGATAGACAATCTGAAGTGTATCAAAGGACCTATCACCTCTGTATGCAAATAATTTTACCCAGTAAATTAAATCTATTTTGATTATTGTCTTATATTACAACTGAGAAAATCTGAACGGTATATTTCGTAATGGGGGTTGGGCAAATTCCAATCTTGACCTTGCATTTTAGGAGTTTTGAATAGTTTACTGTACACGGGCTTGCTGTTAATTCTTTAGTTAGTGCACTGTTTTAGTACTTTGTGGTTAATTAGAAGCTCTTATACAGAATATGGCTCTCTTTTTGTAAACAGCACTTTTTATATATTTAAAATAAAGGTCTCATTGAGCATTCTTGCGGCGTATCTTTAAGTTTACGAAGTGAGTAGGAACATTTTGAATCACTTAGCCCTTCTGTTCGTTATGCCTTATTCATGTTGCAAAATTGAGAACTCAACACGTATAATGTTAACAAGGAAAATAGTTTTAGTTAGTTGAATTTGCTTGAGTATAATTAGGAGACAAATTTGCTTGCCGGAATTGAATGATGCTCCCCTTGGACAATTCTCACTATTTTTGTTTTCTGGGCTGCAGAAGAGAGTGATGATACAGATGCTTCCTCTCACATTCCTTTGGATGATCCCGTGCCAGTTGACTTCAGTGCCGTCGAGGTCATTCAGTGCCTCATAGAACATCATAATGAAATTTTTACTGATGCTAATGAAACAATTTGGAGATAAATCAGCAGCACCTATTTCCTGAGGCACCAATTATTCTTGGATGAATTCTGATACAAGTCTATCCTCTTAGAGGAAGATTTATATCTGAGAGTTGTTTTCTTAGTTCAATTGACCAGGTAGGTAAATTAAACTCGAAATTTATTCGGATGTGAACAATTAGCACAGTGAGAGAGACTACACTGTGATGCACAGAATGGAGCACATTTAGGATGCTTTAGTCAATGTTTTCAAGTTTTCTTTTGTAATAACCTACCAGGATTTGCATGGGTTTCAATTTACTGATTTGAAGATGGATATTTCTGTTGTACATACAACTAAAACTGCTATTATATTAAGCGTGTGAATAATAATTCTATTTACAACTGAAGAATTGACATAACTTCCTTCTTCAATCTATATCGGATTTCTGCAATTGACCGATGGGGGAGGCCCTTGACTACGTTGAACAGTTCAAAATAATATTTAACCCTCCATATAATATAACATAGTCCTTTTTGAAGATCATTGATAAGGATGATAGACATATTAGCATAATAGACGTTTAGAAGATAGCACAAATGGGAGTGATTTCCTTTTTTTTTC

mRNA sequence

TTTTAAAAGAGTTTTGGCCTTTGAGAGACATTCTGTTCTTCAGCTTCTGCAGGCTGAGCGCGTTTTGGCTTTTCGGAATCGGTGGGTTCATGTACGATTTTCTTCTCTTCTTCGGGTTTCTCGAGAAAATTCTTGTGCGATTCTAGGGATTTTTCTGCTTTAATGGTATTCGATCACGACTGCCAGTCATAATTCTATACAGGGTTAATCAATACATATCTTTAAACTGAGTCTGGTTTCATAGTTGGTTCAATGCCTTCTGTTAACTCTTCACAGTGGCAGGAGAAGGCTACTGGTTTTTTTTCTTCATCAGGAGTAAAGCTGAAAGAAGCTGGACATTCAGCTGGAACTTTTGTTGAGGGAGTTGCAAAGGATGCAAAAGGAAATGCTGCTGATGTGGCTGAACGGGTTGGTTCTTTGTTCAAGAGTCGATGGGCACTCCTCCAGCAGCCAGCTACAAGACATGCTGTGCAAGAACGTCTAATATCTGCTGCTGCTACTACTGGCACATTCTTCAGAAAAGGTGTGTCAGAGACAAAGGACAAGGTTGTCGTGGGGAAAGTTAAAGTTGAAGAGGTTGCAAAAAAGACTGCACAAAAGAGCAAGACAATTTTGACAGATATTGAACGATGGCAGAAGGGGGTTGCCAGTACTGATGTATTCGGAGTTCCAATTGAGGTAACTGTACAAAGGCAACAGTCAAGCAGGGTTATTCCACATATTTTGGTTAGGTGTGCCGATTATCTCGTCTTGTCAGGGTTAAACTCGCCATCATTGTTCAAATCTGACGGAGATAAAAAGGTTCTTCAGCAGTTGGTGTCAATGTATAACCAAGATCCCAATGCCCCCTTACCTGAGGGTACGAATCCAGTTGATGTAGCAGCTCTAGCTAAATGTTACCTGGCCAGTCTTCCCGAGCCACTAGTCACGTTTGAGCTTTATAATGAGATCAGGGGTGCTCGTACAAGCATAAATTCCCTACGAAACATTTTTAAGAAACTTCCAAACATGGATGCTCGTAGCCTTTCTATGGAGATGACTCCTATAATAATGTGGCAAAACGACAGGCGACCAGAGTTCTATCGGGAATATTGGGATTATCATTCTAAAAGCTCTTCTGCAAAGTCTTTAAATAATACACCACCTACTTACAGTGCATGGGACATGCTTTCAGAAGAGAGTGATGATACAGATGCTTCCTCTCACATTCCTTTGGATGATCCCGTGCCAGTTGACTTCAGTGCCGTCGAGGTCATTCAGTGCCTCATAGAACATCATAATGAAATTTTTACTGATGCTAATGAAACAATTTGGAGATAAATCAGCAGCACCTATTTCCTGAGGCACCAATTATTCTTGGATGAATTCTGATACAAGTCTATCCTCTTAGAGGAAGATTTATATCTGAGAGTTGTTTTCTTAGTTCAATTGACCAGGTAGGTAAATTAAACTCGAAATTTATTCGGATGTGAACAATTAGCACAGTGAGAGAGACTACACTGTGATGCACAGAATGGAGCACATTTAGGATGCTTTAGTCAATGTTTTCAAGTTTTCTTTTGTAATAACCTACCAGGATTTGCATGGGTTTCAATTTACTGATTTGAAGATGGATATTTCTGTTGTACATACAACTAAAACTGCTATTATATTAAGCGTGTGAATAATAATTCTATTTACAACTGAAGAATTGACATAACTTCCTTCTTCAATCTATATCGGATTTCTGCAATTGACCGATGGGGGAGGCCCTTGACTACGTTGAACAGTTCAAAATAATATTTAACCCTCCATATAATATAACATAGTCCTTTTTGAAGATCATTGATAAGGATGATAGACATATTAGCATAATAGACGTTTAGAAGATAGCACAAATGGGAGTGATTTCCTTTTTTTTTC

Coding sequence (CDS)

ATGCCTTCTGTTAACTCTTCACAGTGGCAGGAGAAGGCTACTGGTTTTTTTTCTTCATCAGGAGTAAAGCTGAAAGAAGCTGGACATTCAGCTGGAACTTTTGTTGAGGGAGTTGCAAAGGATGCAAAAGGAAATGCTGCTGATGTGGCTGAACGGGTTGGTTCTTTGTTCAAGAGTCGATGGGCACTCCTCCAGCAGCCAGCTACAAGACATGCTGTGCAAGAACGTCTAATATCTGCTGCTGCTACTACTGGCACATTCTTCAGAAAAGGTGTGTCAGAGACAAAGGACAAGGTTGTCGTGGGGAAAGTTAAAGTTGAAGAGGTTGCAAAAAAGACTGCACAAAAGAGCAAGACAATTTTGACAGATATTGAACGATGGCAGAAGGGGGTTGCCAGTACTGATGTATTCGGAGTTCCAATTGAGGTAACTGTACAAAGGCAACAGTCAAGCAGGGTTATTCCACATATTTTGGTTAGGTGTGCCGATTATCTCGTCTTGTCAGGGTTAAACTCGCCATCATTGTTCAAATCTGACGGAGATAAAAAGGTTCTTCAGCAGTTGGTGTCAATGTATAACCAAGATCCCAATGCCCCCTTACCTGAGGGTACGAATCCAGTTGATGTAGCAGCTCTAGCTAAATGTTACCTGGCCAGTCTTCCCGAGCCACTAGTCACGTTTGAGCTTTATAATGAGATCAGGGGTGCTCGTACAAGCATAAATTCCCTACGAAACATTTTTAAGAAACTTCCAAACATGGATGCTCGTAGCCTTTCTATGGAGATGACTCCTATAATAATGTGGCAAAACGACAGGCGACCAGAGTTCTATCGGGAATATTGGGATTATCATTCTAAAAGCTCTTCTGCAAAGTCTTTAAATAATACACCACCTACTTACAGTGCATGGGACATGCTTTCAGAAGAGAGTGATGATACAGATGCTTCCTCTCACATTCCTTTGGATGATCCCGTGCCAGTTGACTTCAGTGCCGTCGAGGTCATTCAGTGCCTCATAGAACATCATAATGAAATTTTTACTGATGCTAATGAAACAATTTGGAGATAA

Protein sequence

MPSVNSSQWQEKATGFFSSSGVKLKEAGHSAGTFVEGVAKDAKGNAADVAERVGSLFKSRWALLQQPATRHAVQERLISAAATTGTFFRKGVSETKDKVVVGKVKVEEVAKKTAQKSKTILTDIERWQKGVASTDVFGVPIEVTVQRQQSSRVIPHILVRCADYLVLSGLNSPSLFKSDGDKKVLQQLVSMYNQDPNAPLPEGTNPVDVAALAKCYLASLPEPLVTFELYNEIRGARTSINSLRNIFKKLPNMDARSLSMEMTPIIMWQNDRRPEFYREYWDYHSKSSSAKSLNNTPPTYSAWDMLSEESDDTDASSHIPLDDPVPVDFSAVEVIQCLIEHHNEIFTDANETIWR

Homology

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BLAST of Lsi07G001080 vs. Swiss-Prot
Match: RGAPX_ARATH (Uncharacterized Rho GTPase-activating protein At5g61530 OS=Arabidopsis thaliana GN=At5g61530 PE=1 SV=2)

HSP 1 Score: 486.1 bits (1250), Expect = 3.3e-136
Identity = 254/379 (67.02%), Postives = 296/379 (78.10%), Query Frame = 1


Query: 1   MPSVNSSQWQEKATGFFSSSGVKLKEAGHSAGTFVEGVAKDAKGNAADVAERVGSLFKSR 60
           MPS+ S QWQE+ +GFFSSSG KL+EAG +AG+FV  VAKDAK N ADVAERVGSLFKSR
Sbjct: 1   MPSLISQQWQERTSGFFSSSGTKLREAGQTAGSFVGEVAKDAKVNVADVAERVGSLFKSR 60

Query: 61  WALLQQPATRHAVQERLISAAATTGTFFRKGVSETKDKVVVGKVKVEEVAKKTAQKSKTI 120
           WA+LQQPATRHAVQE LI+AAATTGTF RKG++ETK+KV VGK+KVEE AKKTAQKSKTI
Sbjct: 61  WAILQQPATRHAVQEHLITAAATTGTFVRKGITETKEKVSVGKIKVEEAAKKTAQKSKTI 120

Query: 121 LTDIERWQKGVASTDVFGVPIEVTVQRQQSSRVIPHILVRCADYLVLSGLNSPSLFKSDG 180
           LTDIERWQKGVAS+DVFGV IE+TVQRQ+SSR IP ILV+CADYL+L+GLNSP+LFK++G
Sbjct: 121 LTDIERWQKGVASSDVFGVAIEITVQRQESSRPIPLILVKCADYLILTGLNSPNLFKAEG 180

Query: 181 DKKVLQQLVSMYNQDPNAPLPEGTNPVDVAALAKCYLASLPEPLVTFELYNEIRGARTSI 240
           D+K++QQLVS YNQDP A +PEG NPVDVAAL K YLASLP PL TFELYNEI+ AR+SI
Sbjct: 181 DRKLIQQLVSAYNQDPRASIPEGVNPVDVAALLKYYLASLPTPLTTFELYNEIKDARSSI 240

Query: 241 NSLRNIFKKLPN------------------------MDARSLSMEMTPIIMWQNDRRPEF 300
           + +R   +KL N                        MD+ SL+MEM P+IMW+ D RPE 
Sbjct: 241 HRMRQSLQKLSNVNYNTLEFITALLLRVSQKSLLNKMDSHSLAMEMAPVIMWREDNRPES 300

Query: 301 YREYWDYHSKSSSAKSLNNTPPTYSAWDMLSEESDDTDASSHIPLDDPVPVDFSAVEVIQ 356
           YREYW   S+S      +N   T + WD+LS+E +  DASS IPLDD   VDF AVEV+Q
Sbjct: 301 YREYWRRPSRSPKK---SNDFETATPWDLLSDEGEGPDASSSIPLDDIARVDFGAVEVVQ 360

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BLAST of Lsi07G001080 vs. Swiss-Prot
Match: RG68F_DROME (Rho GTPase-activating protein 68F OS=Drosophila melanogaster GN=RhoGAP68F PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 6.8e-09
Identity = 41/131 (31.30%), Postives = 66/131 (50.38%), Query Frame = 1


Query: 128 QKGVASTDVFGVPIEVTVQRQQSSRVIPHILVRCADYLVLSG-LNSPSLFKSDGDKKVLQ 187
           Q  +A+T  FGVP++  V        IP I+ +C D L ++G +++  +F+  G+   + 
Sbjct: 265 QHKMATTHQFGVPLKFIVMNSPCLNSIPPIVRKCVDSLSITGVIDTEGIFRRSGNHSEIM 324

Query: 188 QLVSMYNQDPNAPLPEGTNPVDVAALAKCYLASLPEPLVTFELYNEIRG------ARTSI 247
            L    N+  +  L +  N   +A L K +L  L EPL+TFELY ++ G         S 
Sbjct: 325 ALKERVNRGEDVDL-KSVNVHVIAGLLKSFLRDLAEPLLTFELYEDVTGFLDWPKEERSR 384

Query: 248 NSLRNIFKKLP 252
           N  + I +KLP
Sbjct: 385 NVTQLIREKLP 394

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BLAST of Lsi07G001080 vs. Swiss-Prot
Match: RHG24_MOUSE (Rho GTPase-activating protein 24 OS=Mus musculus GN=Arhgap24 PE=1 SV=2)

HSP 1 Score: 59.7 bits (143), Expect = 7.5e-08
Identity = 33/128 (25.78%), Postives = 61/128 (47.66%), Query Frame = 1


Query: 123 DIERWQKGVAST-------DVFGVPIEVTV--QRQQSSRVIPHILVRCADYLVLSGLNSP 182
           D+E W K +           +FG  +E TV  +++  +R+ P ++ +C D++   GL   
Sbjct: 110 DMEDWVKSIRRVIWGPFGGGIFGQKLEDTVRYEKRYGNRLAPMLVEQCVDFIRQRGLKEE 169

Query: 183 SLFKSDGDKKVLQQLVSMYNQDPNAPLPEGTNPVDVAALAKCYLASLPEPLVTFELYNEI 242
            LF+  G   ++++L   ++          T+   VA+L K YL  LPEP+V +  Y + 
Sbjct: 170 GLFRLPGQANLVKELQDAFDCGEKPSFDSNTDVHTVASLLKLYLRELPEPVVPYAKYEDF 229

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BLAST of Lsi07G001080 vs. Swiss-Prot
Match: RHG24_RAT (Rho GTPase-activating protein 24 OS=Rattus norvegicus GN=Arhgap24 PE=1 SV=2)

HSP 1 Score: 59.7 bits (143), Expect = 7.5e-08
Identity = 33/128 (25.78%), Postives = 61/128 (47.66%), Query Frame = 1


Query: 123 DIERWQKGVAST-------DVFGVPIEVTV--QRQQSSRVIPHILVRCADYLVLSGLNSP 182
           D+E W K +           +FG  +E TV  +++  +R+ P ++ +C D++   GL   
Sbjct: 111 DMEDWVKSIRRVIWGPFGGGIFGQKLEDTVRYEKRYGNRLAPMLVEQCVDFIRQRGLKEE 170

Query: 183 SLFKSDGDKKVLQQLVSMYNQDPNAPLPEGTNPVDVAALAKCYLASLPEPLVTFELYNEI 242
            LF+  G   ++++L   ++          T+   VA+L K YL  LPEP+V +  Y + 
Sbjct: 171 GLFRLPGQANLVKELQDAFDCGEKPSFDSNTDVHTVASLLKLYLRELPEPVVPYAKYEDF 230

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BLAST of Lsi07G001080 vs. Swiss-Prot
Match: GACY_DICDI (Rho GTPase-activating protein gacY OS=Dictyostelium discoideum GN=gacY PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.3e-07
Identity = 38/129 (29.46%), Postives = 59/129 (45.74%), Query Frame = 1


Query: 130 GVASTDVFGVPIEVTVQRQQSSRVIPHILVRCADYLVLSGLNSPSLFKSDGDKKVLQQLV 189
           G  S  +FG P+E  + R  +   IP +  +   YL   GL    LF+  G    ++ L 
Sbjct: 519 GKKSQPIFGAPLEDVINRPDNPGEIPVLFEKGIAYLSRRGLQVEGLFRLSGANSQIKSLR 578

Query: 190 SMYNQDPNAPLPEGTNPVDVAALAKCYLASLPEPLVTFELYNEI----RGART---SINS 249
             ++Q  +  L +  +   VA L K YL  LP PL  F+LY+      +G +T    + S
Sbjct: 579 QGFDQGEDVDLEDVEDVHTVAGLLKLYLRELPSPLFPFDLYSSFIEISKGEQTKPQKVES 638

Query: 250 LRNIFKKLP 252
           L+ +   LP
Sbjct: 639 LKLLLSLLP 647

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BLAST of Lsi07G001080 vs. TrEMBL
Match: A0A0A0KXL2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022930 PE=4 SV=1)

HSP 1 Score: 663.7 bits (1711), Expect = 1.3e-187
Identity = 343/379 (90.50%), Postives = 350/379 (92.35%), Query Frame = 1


Query: 1   MPSVNSSQWQEKATGFFSSSGVKLKEAGHSAGTFVEGVAKDAKGNAADVAERVGSLFKSR 60
           MP+VNSSQWQEKA+GFFSSSGVKLKEAGHSAG FVE VAKDAKGNAADVAERVG+LFKSR
Sbjct: 5   MPTVNSSQWQEKASGFFSSSGVKLKEAGHSAGNFVEEVAKDAKGNAADVAERVGTLFKSR 64

Query: 61  WALLQQPATRHAVQERLISAAATTGTFFRKGVSETKDKVVVGKVKVEEVAKKTAQKSKTI 120
           WALLQQPATRHAVQERLISAAATTGTFFRKGVSETKDKVVVGKVKVEEVAKKTAQKSKTI
Sbjct: 65  WALLQQPATRHAVQERLISAAATTGTFFRKGVSETKDKVVVGKVKVEEVAKKTAQKSKTI 124

Query: 121 LTDIERWQKGVASTDVFGVPIEVTVQRQQSSRVIPHILVRCADYLVLSGLNSPSLFKSDG 180
           LTDIERWQKGVASTDVFGV IEVTVQ+QQSSRVIPHILVRCADYLVLSGLNSP LFKSDG
Sbjct: 125 LTDIERWQKGVASTDVFGVSIEVTVQKQQSSRVIPHILVRCADYLVLSGLNSPWLFKSDG 184

Query: 181 DKKVLQQLVSMYNQDPNAPLPEGTNPVDVAALAKCYLASLPEPLVTFELYNEIRGARTSI 240
           DKKVLQQLVSMYNQDPNAPLPEGTNPVDVAALAKCYLASLPEPLVTFELYNEIRGARTSI
Sbjct: 185 DKKVLQQLVSMYNQDPNAPLPEGTNPVDVAALAKCYLASLPEPLVTFELYNEIRGARTSI 244

Query: 241 NSLRNIFKKLPN------------------------MDARSLSMEMTPIIMWQNDRRPEF 300
           N+LRNIFKKLPN                        MDARSLSMEMTPIIMWQNDRRPEF
Sbjct: 245 NALRNIFKKLPNVNYMTLEFTTALLLRVSQKALLNKMDARSLSMEMTPIIMWQNDRRPEF 304

Query: 301 YREYWDYHSKSSSAKSLNNTPPTYSAWDMLSEESDDTDASSHIPLDDPVPVDFSAVEVIQ 356
           YREYWDYHSKSSSAKSLNNTPPTYSAWDMLSEESDDTDASSHIPLDD VPVDF+AVEV+Q
Sbjct: 305 YREYWDYHSKSSSAKSLNNTPPTYSAWDMLSEESDDTDASSHIPLDDGVPVDFNAVEVVQ 364

[Close]

BLAST of Lsi07G001080 vs. TrEMBL
Match: U5GL40_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s24160g PE=4 SV=1)

HSP 1 Score: 530.0 bits (1364), Expect = 2.2e-147
Identity = 268/379 (70.71%), Postives = 313/379 (82.59%), Query Frame = 1


Query: 1   MPSVNSSQWQEKATGFFSSSGVKLKEAGHSAGTFVEGVAKDAKGNAADVAERVGSLFKSR 60
           MPS  S QWQEKATGFFS+SGVKLKEAG SAGTFV  VAKDAKGN ADVAE+VGS  K+R
Sbjct: 1   MPSAVSPQWQEKATGFFSTSGVKLKEAGQSAGTFVGEVAKDAKGNVADVAEKVGSAVKTR 60

Query: 61  WALLQQPATRHAVQERLISAAATTGTFFRKGVSETKDKVVVGKVKVEEVAKKTAQKSKTI 120
           WA+L++P+TRHA+QERLI+AAATTG FFRKG+SETKDKV VGK KVEEVAKKTAQKSKTI
Sbjct: 61  WAILREPSTRHAMQERLITAAATTGMFFRKGISETKDKVTVGKTKVEEVAKKTAQKSKTI 120

Query: 121 LTDIERWQKGVASTDVFGVPIEVTVQRQQSSRVIPHILVRCADYLVLSGLNSPSLFKSDG 180
           LTDIERWQKGVASTDVFGVPIEVTVQRQ+ S+++PHILV+CADYL+LSGLNS  LFK++G
Sbjct: 121 LTDIERWQKGVASTDVFGVPIEVTVQRQEFSKLVPHILVKCADYLILSGLNSVDLFKAEG 180

Query: 181 DKKVLQQLVSMYNQDPNAPLPEGTNPVDVAALAKCYLASLPEPLVTFELYNEIRGARTSI 240
           DKKV+QQLVS+YNQD NA LPEG NP+DVA LAKCYLASLPEPL TFELY+EI+GAR+SI
Sbjct: 181 DKKVIQQLVSLYNQDSNASLPEGLNPIDVAFLAKCYLASLPEPLTTFELYDEIKGARSSI 240

Query: 241 NSLRNIFKKLP------------------------NMDARSLSMEMTPIIMWQNDRRPEF 300
           + ++NI KKLP                         MDAR+++ EM P+IMWQ +R+PE 
Sbjct: 241 HVMKNILKKLPAVNYMTLEFITALLLRVSQKSLLNKMDARAIATEMAPVIMWQKERKPET 300

Query: 301 YREYWDYHSKSSSAKSLNNTPPTYSAWDMLSEESDDTDASSHIPLDDPVPVDFSAVEVIQ 356
           YR YW+  S+S S K++ +  PTYSAWDMLSEES+D DASS IPLDD +P DF A++++Q
Sbjct: 301 YRSYWNNLSRSPSKKNM-DPAPTYSAWDMLSEESEDMDASSLIPLDDAMPTDFGAIDIVQ 360

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BLAST of Lsi07G001080 vs. TrEMBL
Match: A0A0B0NPG4_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_03900 PE=4 SV=1)

HSP 1 Score: 524.6 bits (1350), Expect = 9.2e-146
Identity = 269/379 (70.98%), Postives = 309/379 (81.53%), Query Frame = 1


Query: 1   MPSVNSSQWQEKATGFFSSSGVKLKEAGHSAGTFVEGVAKDAKGNAADVAERVGSLFKSR 60
           MPS  S QWQEKATGFFSSSGVKLKEA  +AGTFV  VAKDAKGN  DVAERVGS+ K+R
Sbjct: 1   MPSAVSQQWQEKATGFFSSSGVKLKEASQTAGTFVGEVAKDAKGNVTDVAERVGSMVKNR 60

Query: 61  WALLQQPATRHAVQERLISAAATTGTFFRKGVSETKDKVVVGKVKVEEVAKKTAQKSKTI 120
           WA L+QPATRHAVQE LISAAATTGTF RKG++ TKD+VVVGK KVEEVAKKTAQKSKTI
Sbjct: 61  WAFLRQPATRHAVQESLISAAATTGTFLRKGITGTKDRVVVGKTKVEEVAKKTAQKSKTI 120

Query: 121 LTDIERWQKGVASTDVFGVPIEVTVQRQQSSRVIPHILVRCADYLVLSGLNSPSLFKSDG 180
           LTDIERWQKGVASTDVFGVPIEVTVQRQQ+ + IP ILVRCADYL+LSG+NS  LFK++G
Sbjct: 121 LTDIERWQKGVASTDVFGVPIEVTVQRQQAIKPIPLILVRCADYLILSGINSQYLFKAEG 180

Query: 181 DKKVLQQLVSMYNQDPNAPLPEGTNPVDVAALAKCYLASLPEPLVTFELYNEIRGARTSI 240
           DKKV++QLVS YNQD NA +PEG NP+DVAALAK Y+ASLPEPL TFELY+EI+ AR+SI
Sbjct: 181 DKKVIEQLVSAYNQDLNASIPEGVNPIDVAALAKYYIASLPEPLTTFELYDEIKSARSSI 240

Query: 241 NSLRNIFKKLPN------------------------MDARSLSMEMTPIIMWQNDRRPEF 300
           +++RN+ K LP+                        MDARSL+MEM P+IMWQ DR+PE 
Sbjct: 241 HAMRNVLKMLPSVNYMTLEFITALLLRVSQKSVLNKMDARSLAMEMAPVIMWQKDRKPES 300

Query: 301 YREYWDYHSKSSSAKSLNNTPPTYSAWDMLSEESDDTDASSHIPLDDPVPVDFSAVEVIQ 356
           YR+YW +  KS S  S+++T PTYSAWDML ++ +D DASSHIPLDD +PVDF A+EVIQ
Sbjct: 301 YRKYWSHPPKSPSKGSMDST-PTYSAWDMLEDDGEDMDASSHIPLDDGIPVDFGAIEVIQ 360

[Close]

BLAST of Lsi07G001080 vs. TrEMBL
Match: B9N0M8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s24160g PE=4 SV=1)

HSP 1 Score: 523.5 bits (1347), Expect = 2.0e-145
Identity = 267/379 (70.45%), Postives = 312/379 (82.32%), Query Frame = 1


Query: 1   MPSVNSSQWQEKATGFFSSSGVKLKEAGHSAGTFVEGVAKDAKGNAADVAERVGSLFKSR 60
           MPS  S QWQEKATGFFS+SGVKLKEAG SAGTFV  VAKDAKGN ADVAE+VGS  K+R
Sbjct: 1   MPSAVSPQWQEKATGFFSTSGVKLKEAGQSAGTFVGEVAKDAKGNVADVAEKVGSAVKTR 60

Query: 61  WALLQQPATRHAVQERLISAAATTGTFFRKGVSETKDKVVVGKVKVEEVAKKTAQKSKTI 120
           WA+L++P+TRHA+QERLI+AAATTG FFRKG+SETKDKV VGK KVEEVAKKTAQKSKTI
Sbjct: 61  WAILREPSTRHAMQERLITAAATTGMFFRKGISETKDKVTVGKTKVEEVAKKTAQKSKTI 120

Query: 121 LTDIERWQKGVASTDVFGVPIEVTVQRQQSSRVIPHILVRCADYLVLSGLNSPSLFKSDG 180
           LTDIERWQKGVASTDVFGVPIEVTVQRQ+ S+++PHILV+CADYL+LSGLNS  LFK++G
Sbjct: 121 LTDIERWQKGVASTDVFGVPIEVTVQRQEFSKLVPHILVKCADYLILSGLNSVDLFKAEG 180

Query: 181 DKKVLQQLVSMYNQDPNAPLPEGTNPVDVAALAKCYLASLPEPLVTFELYNEIRGARTSI 240
           DKKV+QQLVS+YNQD NA LPEG NP+DVA LAKCYLASLPEPL TFELY+EI+GAR+SI
Sbjct: 181 DKKVIQQLVSLYNQDSNASLPEGLNPIDVAFLAKCYLASLPEPLTTFELYDEIKGARSSI 240

Query: 241 NSLRNIFKKLP------------------------NMDARSLSMEMTPIIMWQNDRRPEF 300
           + ++NI KKLP                         MDAR+++ EM P+IMWQ +R+PE 
Sbjct: 241 HVMKNILKKLPAVNYMTLEFITALLLRVSQKSLLNKMDARAIATEMAPVIMWQKERKPET 300

Query: 301 YREYWDYHSKSSSAKSLNNTPPTYSAWDMLSEESDDTDASSHIPLDDPVPVDFSAVEVIQ 356
           YR YW+  S+S S K++ +  PTYSAWDMLS ES+D DASS IPLDD +P DF A++++Q
Sbjct: 301 YRSYWNNLSRSPSKKNM-DPAPTYSAWDMLS-ESEDMDASSLIPLDDAMPTDFGAIDIVQ 360

[Close]

BLAST of Lsi07G001080 vs. TrEMBL
Match: A0A0D2TA56_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G215000 PE=4 SV=1)

HSP 1 Score: 522.7 bits (1345), Expect = 3.5e-145
Identity = 268/379 (70.71%), Postives = 309/379 (81.53%), Query Frame = 1


Query: 1   MPSVNSSQWQEKATGFFSSSGVKLKEAGHSAGTFVEGVAKDAKGNAADVAERVGSLFKSR 60
           MPS  S QWQEKATGFFSSSGVKLKEA  +AGTFV  VAKDAKGN  DVAERVGS+ KSR
Sbjct: 1   MPSAVSQQWQEKATGFFSSSGVKLKEASQTAGTFVGEVAKDAKGNVTDVAERVGSMVKSR 60

Query: 61  WALLQQPATRHAVQERLISAAATTGTFFRKGVSETKDKVVVGKVKVEEVAKKTAQKSKTI 120
           WA L+QPATRHAVQE LISAAATTGTF RKG++ TKD+VVVGK KVEEVAKKTAQKSKTI
Sbjct: 61  WAFLRQPATRHAVQESLISAAATTGTFLRKGITGTKDRVVVGKTKVEEVAKKTAQKSKTI 120

Query: 121 LTDIERWQKGVASTDVFGVPIEVTVQRQQSSRVIPHILVRCADYLVLSGLNSPSLFKSDG 180
           LTDIERWQKGVASTDVFGVPIEVTVQRQQ+ + IP ILV+CADYL+LSG+NS  LFK++G
Sbjct: 121 LTDIERWQKGVASTDVFGVPIEVTVQRQQAIKPIPLILVKCADYLILSGINSQYLFKAEG 180

Query: 181 DKKVLQQLVSMYNQDPNAPLPEGTNPVDVAALAKCYLASLPEPLVTFELYNEIRGARTSI 240
           DKKV++QLVS YNQD NA +PEG NP+DVAALAK Y+ASLPEPL TFELY+EI+ AR+SI
Sbjct: 181 DKKVIEQLVSAYNQDFNASIPEGVNPIDVAALAKYYIASLPEPLTTFELYDEIKSARSSI 240

Query: 241 NSLRNIFKKLPN------------------------MDARSLSMEMTPIIMWQNDRRPEF 300
           +++RN+ K LP+                        MDARSL++EM P+IMWQ DR+PE 
Sbjct: 241 HAMRNVLKMLPSVNYMTLEFITALLLRVSQKSVLNKMDARSLALEMAPVIMWQKDRKPES 300

Query: 301 YREYWDYHSKSSSAKSLNNTPPTYSAWDMLSEESDDTDASSHIPLDDPVPVDFSAVEVIQ 356
           YR+YW +  KS S  S+++T PTYSAWDML ++ +D DASSHIPLDD +PVDF A+EVIQ
Sbjct: 301 YRKYWSHPLKSPSKGSMDST-PTYSAWDMLEDDGEDMDASSHIPLDDGIPVDFGAIEVIQ 360

[Close]

BLAST of Lsi07G001080 vs. TAIR10
Match: AT5G61530.1 (AT5G61530.1 small G protein family protein / RhoGAP family protein)

HSP 1 Score: 486.1 bits (1250), Expect = 1.8e-137
Identity = 254/379 (67.02%), Postives = 296/379 (78.10%), Query Frame = 1


Query: 1   MPSVNSSQWQEKATGFFSSSGVKLKEAGHSAGTFVEGVAKDAKGNAADVAERVGSLFKSR 60
           MPS+ S QWQE+ +GFFSSSG KL+EAG +AG+FV  VAKDAK N ADVAERVGSLFKSR
Sbjct: 1   MPSLISQQWQERTSGFFSSSGTKLREAGQTAGSFVGEVAKDAKVNVADVAERVGSLFKSR 60

Query: 61  WALLQQPATRHAVQERLISAAATTGTFFRKGVSETKDKVVVGKVKVEEVAKKTAQKSKTI 120
           WA+LQQPATRHAVQE LI+AAATTGTF RKG++ETK+KV VGK+KVEE AKKTAQKSKTI
Sbjct: 61  WAILQQPATRHAVQEHLITAAATTGTFVRKGITETKEKVSVGKIKVEEAAKKTAQKSKTI 120

Query: 121 LTDIERWQKGVASTDVFGVPIEVTVQRQQSSRVIPHILVRCADYLVLSGLNSPSLFKSDG 180
           LTDIERWQKGVAS+DVFGV IE+TVQRQ+SSR IP ILV+CADYL+L+GLNSP+LFK++G
Sbjct: 121 LTDIERWQKGVASSDVFGVAIEITVQRQESSRPIPLILVKCADYLILTGLNSPNLFKAEG 180

Query: 181 DKKVLQQLVSMYNQDPNAPLPEGTNPVDVAALAKCYLASLPEPLVTFELYNEIRGARTSI 240
           D+K++QQLVS YNQDP A +PEG NPVDVAAL K YLASLP PL TFELYNEI+ AR+SI
Sbjct: 181 DRKLIQQLVSAYNQDPRASIPEGVNPVDVAALLKYYLASLPTPLTTFELYNEIKDARSSI 240

Query: 241 NSLRNIFKKLPN------------------------MDARSLSMEMTPIIMWQNDRRPEF 300
           + +R   +KL N                        MD+ SL+MEM P+IMW+ D RPE 
Sbjct: 241 HRMRQSLQKLSNVNYNTLEFITALLLRVSQKSLLNKMDSHSLAMEMAPVIMWREDNRPES 300

Query: 301 YREYWDYHSKSSSAKSLNNTPPTYSAWDMLSEESDDTDASSHIPLDDPVPVDFSAVEVIQ 356
           YREYW   S+S      +N   T + WD+LS+E +  DASS IPLDD   VDF AVEV+Q
Sbjct: 301 YREYWRRPSRSPKK---SNDFETATPWDLLSDEGEGPDASSSIPLDDIARVDFGAVEVVQ 360

[Close]

BLAST of Lsi07G001080 vs. NCBI nr
Match: gi|449458339|ref|XP_004146905.1| (PREDICTED: uncharacterized Rho GTPase-activating protein At5g61530 [Cucumis sativus])

HSP 1 Score: 663.7 bits (1711), Expect = 1.8e-187
Identity = 343/379 (90.50%), Postives = 350/379 (92.35%), Query Frame = 1


Query: 1   MPSVNSSQWQEKATGFFSSSGVKLKEAGHSAGTFVEGVAKDAKGNAADVAERVGSLFKSR 60
           MP+VNSSQWQEKA+GFFSSSGVKLKEAGHSAG FVE VAKDAKGNAADVAERVG+LFKSR
Sbjct: 5   MPTVNSSQWQEKASGFFSSSGVKLKEAGHSAGNFVEEVAKDAKGNAADVAERVGTLFKSR 64

Query: 61  WALLQQPATRHAVQERLISAAATTGTFFRKGVSETKDKVVVGKVKVEEVAKKTAQKSKTI 120
           WALLQQPATRHAVQERLISAAATTGTFFRKGVSETKDKVVVGKVKVEEVAKKTAQKSKTI
Sbjct: 65  WALLQQPATRHAVQERLISAAATTGTFFRKGVSETKDKVVVGKVKVEEVAKKTAQKSKTI 124

Query: 121 LTDIERWQKGVASTDVFGVPIEVTVQRQQSSRVIPHILVRCADYLVLSGLNSPSLFKSDG 180
           LTDIERWQKGVASTDVFGV IEVTVQ+QQSSRVIPHILVRCADYLVLSGLNSP LFKSDG
Sbjct: 125 LTDIERWQKGVASTDVFGVSIEVTVQKQQSSRVIPHILVRCADYLVLSGLNSPWLFKSDG 184

Query: 181 DKKVLQQLVSMYNQDPNAPLPEGTNPVDVAALAKCYLASLPEPLVTFELYNEIRGARTSI 240
           DKKVLQQLVSMYNQDPNAPLPEGTNPVDVAALAKCYLASLPEPLVTFELYNEIRGARTSI
Sbjct: 185 DKKVLQQLVSMYNQDPNAPLPEGTNPVDVAALAKCYLASLPEPLVTFELYNEIRGARTSI 244

Query: 241 NSLRNIFKKLPN------------------------MDARSLSMEMTPIIMWQNDRRPEF 300
           N+LRNIFKKLPN                        MDARSLSMEMTPIIMWQNDRRPEF
Sbjct: 245 NALRNIFKKLPNVNYMTLEFTTALLLRVSQKALLNKMDARSLSMEMTPIIMWQNDRRPEF 304

Query: 301 YREYWDYHSKSSSAKSLNNTPPTYSAWDMLSEESDDTDASSHIPLDDPVPVDFSAVEVIQ 356
           YREYWDYHSKSSSAKSLNNTPPTYSAWDMLSEESDDTDASSHIPLDD VPVDF+AVEV+Q
Sbjct: 305 YREYWDYHSKSSSAKSLNNTPPTYSAWDMLSEESDDTDASSHIPLDDGVPVDFNAVEVVQ 364

[Close]

BLAST of Lsi07G001080 vs. NCBI nr
Match: gi|659107846|ref|XP_008453890.1| (PREDICTED: uncharacterized Rho GTPase-activating protein At5g61530 [Cucumis melo])

HSP 1 Score: 656.0 bits (1691), Expect = 3.8e-185
Identity = 340/379 (89.71%), Postives = 346/379 (91.29%), Query Frame = 1


Query: 1   MPSVNSSQWQEKATGFFSSSGVKLKEAGHSAGTFVEGVAKDAKGNAADVAERVGSLFKSR 60
           MP+VNSSQWQEKA+GFF  +GVKLKEAGHSAG FVE VAKDAKGNAADVAERVGSLFKSR
Sbjct: 5   MPTVNSSQWQEKASGFFQIAGVKLKEAGHSAGNFVEEVAKDAKGNAADVAERVGSLFKSR 64

Query: 61  WALLQQPATRHAVQERLISAAATTGTFFRKGVSETKDKVVVGKVKVEEVAKKTAQKSKTI 120
           WALLQQPATRHAVQERLISAAATTGTFFRKGVSETKDKVVVGKVKVEEVAKKTAQKSKTI
Sbjct: 65  WALLQQPATRHAVQERLISAAATTGTFFRKGVSETKDKVVVGKVKVEEVAKKTAQKSKTI 124

Query: 121 LTDIERWQKGVASTDVFGVPIEVTVQRQQSSRVIPHILVRCADYLVLSGLNSPSLFKSDG 180
           LTDIERWQKGVASTDVFGV IEVTVQRQQSSRVIPHILVRCADYLVLSGLNSP LFKSDG
Sbjct: 125 LTDIERWQKGVASTDVFGVAIEVTVQRQQSSRVIPHILVRCADYLVLSGLNSPWLFKSDG 184

Query: 181 DKKVLQQLVSMYNQDPNAPLPEGTNPVDVAALAKCYLASLPEPLVTFELYNEIRGARTSI 240
           DKKVLQQLVSMYNQDPNA LPEGTNPVDVAALAKCYLASLPEPLVTFELYN+IRGARTSI
Sbjct: 185 DKKVLQQLVSMYNQDPNAALPEGTNPVDVAALAKCYLASLPEPLVTFELYNDIRGARTSI 244

Query: 241 NSLRNIFKKLPN------------------------MDARSLSMEMTPIIMWQNDRRPEF 300
           N+LRNIFKKLPN                        MDARSLSMEMTPIIMWQNDRRPEF
Sbjct: 245 NALRNIFKKLPNVNYMTLEFTTALLQRISQKALLNKMDARSLSMEMTPIIMWQNDRRPEF 304

Query: 301 YREYWDYHSKSSSAKSLNNTPPTYSAWDMLSEESDDTDASSHIPLDDPVPVDFSAVEVIQ 356
           YREYWDYHSKSSSAKSLNNTPPTYSAWDMLSEESDDTDASSHIPLDD +PVDFSAVEVI 
Sbjct: 305 YREYWDYHSKSSSAKSLNNTPPTYSAWDMLSEESDDTDASSHIPLDDGIPVDFSAVEVIH 364

[Close]

BLAST of Lsi07G001080 vs. NCBI nr
Match: gi|1009121980|ref|XP_015877757.1| (PREDICTED: uncharacterized Rho GTPase-activating protein At5g61530 [Ziziphus jujuba])

HSP 1 Score: 530.4 bits (1365), Expect = 2.4e-147
Identity = 270/379 (71.24%), Postives = 305/379 (80.47%), Query Frame = 1


Query: 1   MPSVNSSQWQEKATGFFSSSGVKLKEAGHSAGTFVEGVAKDAKGNAADVAERVGSLFKSR 60
           MPS     W +KA+GFFSSSG K+K AG SAGTFV  VAKDAKGN  DVA RVG++ KSR
Sbjct: 1   MPSAILPDWHDKASGFFSSSGSKIKVAGQSAGTFVGDVAKDAKGNVTDVAGRVGNMVKSR 60

Query: 61  WALLQQPATRHAVQERLISAAATTGTFFRKGVSETKDKVVVGKVKVEEVAKKTAQKSKTI 120
           WA+LQQP+TRHAVQERLISAAATTGT FRKG SETKDKV VGK+KVEEVAKKTAQKSKTI
Sbjct: 61  WAILQQPSTRHAVQERLISAAATTGTLFRKGFSETKDKVSVGKIKVEEVAKKTAQKSKTI 120

Query: 121 LTDIERWQKGVASTDVFGVPIEVTVQRQQSSRVIPHILVRCADYLVLSGLNSPSLFKSDG 180
           LTDIERWQKGVA TDVFGVPIEVTVQRQQSSR IPHILV CADYL+LSGLN+P LFKS+G
Sbjct: 121 LTDIERWQKGVAGTDVFGVPIEVTVQRQQSSRPIPHILVNCADYLILSGLNTPELFKSEG 180

Query: 181 DKKVLQQLVSMYNQDPNAPLPEGTNPVDVAALAKCYLASLPEPLVTFELYNEIRGARTSI 240
           DKKV+QQLVS+YN+DPNA LPE  NP DVAAL KCYLASLPEPL TFELYNEI+ AR+SI
Sbjct: 181 DKKVIQQLVSIYNEDPNASLPESVNPADVAALIKCYLASLPEPLTTFELYNEIKSARSSI 240

Query: 241 NSLRNIFKKLPN------------------------MDARSLSMEMTPIIMWQNDRRPEF 300
           +++RNI K+LPN                        MD +SL+ E+ P+I+WQ +RRPEF
Sbjct: 241 HAMRNILKRLPNVNYMTLEFTTALLLRVSQKSLLNKMDTQSLATELAPVIVWQEERRPEF 300

Query: 301 YREYWDYHSKSSSAKSLNNTPPTYSAWDMLSEESDDTDASSHIPLDDPVPVDFSAVEVIQ 356
           YR+YW    K SS K+ N  PP YSAWDMLSE+ +D DASS IPLDD +P+DF+A+EV+Q
Sbjct: 301 YRQYWSSLPKGSSDKNFNQ-PPAYSAWDMLSEDGEDIDASSPIPLDDGMPIDFAAIEVVQ 360

[Close]

BLAST of Lsi07G001080 vs. NCBI nr
Match: gi|566168404|ref|XP_006385127.1| (hypothetical protein POPTR_0004s24160g [Populus trichocarpa])

HSP 1 Score: 530.0 bits (1364), Expect = 3.1e-147
Identity = 268/379 (70.71%), Postives = 313/379 (82.59%), Query Frame = 1


Query: 1   MPSVNSSQWQEKATGFFSSSGVKLKEAGHSAGTFVEGVAKDAKGNAADVAERVGSLFKSR 60
           MPS  S QWQEKATGFFS+SGVKLKEAG SAGTFV  VAKDAKGN ADVAE+VGS  K+R
Sbjct: 1   MPSAVSPQWQEKATGFFSTSGVKLKEAGQSAGTFVGEVAKDAKGNVADVAEKVGSAVKTR 60

Query: 61  WALLQQPATRHAVQERLISAAATTGTFFRKGVSETKDKVVVGKVKVEEVAKKTAQKSKTI 120
           WA+L++P+TRHA+QERLI+AAATTG FFRKG+SETKDKV VGK KVEEVAKKTAQKSKTI
Sbjct: 61  WAILREPSTRHAMQERLITAAATTGMFFRKGISETKDKVTVGKTKVEEVAKKTAQKSKTI 120

Query: 121 LTDIERWQKGVASTDVFGVPIEVTVQRQQSSRVIPHILVRCADYLVLSGLNSPSLFKSDG 180
           LTDIERWQKGVASTDVFGVPIEVTVQRQ+ S+++PHILV+CADYL+LSGLNS  LFK++G
Sbjct: 121 LTDIERWQKGVASTDVFGVPIEVTVQRQEFSKLVPHILVKCADYLILSGLNSVDLFKAEG 180

Query: 181 DKKVLQQLVSMYNQDPNAPLPEGTNPVDVAALAKCYLASLPEPLVTFELYNEIRGARTSI 240
           DKKV+QQLVS+YNQD NA LPEG NP+DVA LAKCYLASLPEPL TFELY+EI+GAR+SI
Sbjct: 181 DKKVIQQLVSLYNQDSNASLPEGLNPIDVAFLAKCYLASLPEPLTTFELYDEIKGARSSI 240

Query: 241 NSLRNIFKKLP------------------------NMDARSLSMEMTPIIMWQNDRRPEF 300
           + ++NI KKLP                         MDAR+++ EM P+IMWQ +R+PE 
Sbjct: 241 HVMKNILKKLPAVNYMTLEFITALLLRVSQKSLLNKMDARAIATEMAPVIMWQKERKPET 300

Query: 301 YREYWDYHSKSSSAKSLNNTPPTYSAWDMLSEESDDTDASSHIPLDDPVPVDFSAVEVIQ 356
           YR YW+  S+S S K++ +  PTYSAWDMLSEES+D DASS IPLDD +P DF A++++Q
Sbjct: 301 YRSYWNNLSRSPSKKNM-DPAPTYSAWDMLSEESEDMDASSLIPLDDAMPTDFGAIDIVQ 360

[Close]

BLAST of Lsi07G001080 vs. NCBI nr
Match: gi|743849452|ref|XP_011028470.1| (PREDICTED: uncharacterized Rho GTPase-activating protein At5g61530 [Populus euphratica])

HSP 1 Score: 525.0 bits (1351), Expect = 1.0e-145
Identity = 267/379 (70.45%), Postives = 311/379 (82.06%), Query Frame = 1


Query: 1   MPSVNSSQWQEKATGFFSSSGVKLKEAGHSAGTFVEGVAKDAKGNAADVAERVGSLFKSR 60
           MPS  S QWQEKATGFFS+SGVKLKEAG SAGTFV  VAKDAKGN ADVAE+VGS  K+R
Sbjct: 1   MPSAVSPQWQEKATGFFSTSGVKLKEAGQSAGTFVGEVAKDAKGNVADVAEKVGSAVKTR 60

Query: 61  WALLQQPATRHAVQERLISAAATTGTFFRKGVSETKDKVVVGKVKVEEVAKKTAQKSKTI 120
           WA+L++P+TRHA+QERLI+AAATTG FFRKG+SETKDKV VGK KVEEVAKKTAQKSKT+
Sbjct: 61  WAILREPSTRHAMQERLITAAATTGMFFRKGISETKDKVTVGKTKVEEVAKKTAQKSKTL 120

Query: 121 LTDIERWQKGVASTDVFGVPIEVTVQRQQSSRVIPHILVRCADYLVLSGLNSPSLFKSDG 180
           LTDIERWQKGVASTDVFGVPIEVTVQRQ+ S+++PHILV+CAD L+LSGLNS  LFK++G
Sbjct: 121 LTDIERWQKGVASTDVFGVPIEVTVQRQEFSKLVPHILVKCADNLILSGLNSVDLFKAEG 180

Query: 181 DKKVLQQLVSMYNQDPNAPLPEGTNPVDVAALAKCYLASLPEPLVTFELYNEIRGARTSI 240
           DKKV+QQLVS+YNQD NA LPEG NP DVA LAKCYLASLPEPL TFELY+EI+GAR+SI
Sbjct: 181 DKKVIQQLVSLYNQDSNASLPEGLNPTDVAFLAKCYLASLPEPLTTFELYDEIKGARSSI 240

Query: 241 NSLRNIFKKLP------------------------NMDARSLSMEMTPIIMWQNDRRPEF 300
           + ++NI KKLP                         MDAR+++ EM P+IMWQ +R+PE 
Sbjct: 241 HVMKNILKKLPAVNYMTLEFITALLLRVSQKSLLNKMDARAIATEMAPVIMWQKERKPET 300

Query: 301 YREYWDYHSKSSSAKSLNNTPPTYSAWDMLSEESDDTDASSHIPLDDPVPVDFSAVEVIQ 356
           YR YW+  S+S S K++ +  PTYSAWDMLSEES+D DASS IPLDD +P DF A++V+Q
Sbjct: 301 YRSYWNNLSRSPSKKNM-DPAPTYSAWDMLSEESEDMDASSLIPLDDAMPTDFGAIDVVQ 360

The following BLAST results are available for this feature:

BLAST of Lsi07G001080 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RGAPX_ARATH	3.3e-136	67.02	Uncharacterized Rho GTPase-activating protein At5g61530 OS=Arabidopsis thaliana ...	[more]
RG68F_DROME	6.8e-09	31.30	Rho GTPase-activating protein 68F OS=Drosophila melanogaster GN=RhoGAP68F PE=1 S...	[more]
RHG24_MOUSE	7.5e-08	25.78	Rho GTPase-activating protein 24 OS=Mus musculus GN=Arhgap24 PE=1 SV=2	[more]
RHG24_RAT	7.5e-08	25.78	Rho GTPase-activating protein 24 OS=Rattus norvegicus GN=Arhgap24 PE=1 SV=2	[more]
GACY_DICDI	1.3e-07	29.46	Rho GTPase-activating protein gacY OS=Dictyostelium discoideum GN=gacY PE=3 SV=1	[more]

BLAST of Lsi07G001080 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXL2_CUCSA	1.3e-187	90.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G022930 PE=4 SV=1	[more]
U5GL40_POPTR	2.2e-147	70.71	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s24160g PE=4 SV=1	[more]
A0A0B0NPG4_GOSAR	9.2e-146	70.98	Uncharacterized protein OS=Gossypium arboreum GN=F383_03900 PE=4 SV=1	[more]
B9N0M8_POPTR	2.0e-145	70.45	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s24160g PE=4 SV=1	[more]
A0A0D2TA56_GOSRA	3.5e-145	70.71	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G215000 PE=4 SV=1	[more]

BLAST of Lsi07G001080 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G61530.1	1.8e-137	67.02	small G protein family protein / RhoGAP family protein	[more]

BLAST of Lsi07G001080 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449458339\|ref\|XP_004146905.1\|	1.8e-187	90.50	PREDICTED: uncharacterized Rho GTPase-activating protein At5g61530 [Cucumis sati...	[more]
gi\|659107846\|ref\|XP_008453890.1\|	3.8e-185	89.71	PREDICTED: uncharacterized Rho GTPase-activating protein At5g61530 [Cucumis melo...	[more]
gi\|1009121980\|ref\|XP_015877757.1\|	2.4e-147	71.24	PREDICTED: uncharacterized Rho GTPase-activating protein At5g61530 [Ziziphus juj...	[more]
gi\|566168404\|ref\|XP_006385127.1\|	3.1e-147	70.71	hypothetical protein POPTR_0004s24160g [Populus trichocarpa]	[more]
gi\|743849452\|ref\|XP_011028470.1\|	1.0e-145	70.45	PREDICTED: uncharacterized Rho GTPase-activating protein At5g61530 [Populus euph...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0007165	signal transduction

Vocabulary: **INTERPRO**
Term	Definition
IPR008936	Rho_GTPase_activation_prot
IPR000198	RhoGAP_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043087	regulation of GTPase activity
biological_process	GO:0007165	signal transduction
biological_process	GO:0048193	Golgi vesicle transport
biological_process	GO:0006623	protein targeting to vacuole
biological_process	GO:0006810	transport
biological_process	GO:1902582	single-organism intracellular transport
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G001080.1	Lsi07G001080.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000198	Rho GTPase-activating protein domain	GENE3D	G3DSA:1.10.555.10		coord: 331..354 score: 3.2E-6coord: 255..282 score: 3.2E-6coord: 133..254 score: 2.8
IPR000198	Rho GTPase-activating protein domain	PFAM	PF00620	RhoGAP	coord: 155..258 score: 9.1
IPR000198	Rho GTPase-activating protein domain	SMART	SM00324	RhoGAP_3	coord: 152..344 score: 4.
IPR000198	Rho GTPase-activating protein domain	PROFILE	PS50238	RHOGAP	coord: 139..346 score: 20
IPR008936	Rho GTPase activation protein	unknown	SSF48350	GTPase activation domain, GAP	coord: 321..346 score: 1.26E-27coord: 134..268 score: 1.26
None	No IPR available	PANTHER	PTHR23176	RHO/RAC/CDC GTPASE-ACTIVATING PROTEIN	coord: 307..355 score: 2.5E-180coord: 35..270 score: 2.5E
None	No IPR available	PANTHER	PTHR23176:SF32	SUBFAMILY NOT NAMED	coord: 307..355 score: 2.5E-180coord: 35..270 score: 2.5E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi07G001080	Csa4G022930	Cucumber (Chinese Long) v2	culsiB303
Lsi07G001080	CSPI04G04060	Wild cucumber (PI 183967)	cpilsiB303
Lsi07G001080	CmaCh16G002090	Cucurbita maxima (Rimu)	cmalsiB323
Lsi07G001080	CmaCh04G003530	Cucurbita maxima (Rimu)	cmalsiB696
Lsi07G001080	CmoCh04G003720	Cucurbita moschata (Rifu)	cmolsiB690
Lsi07G001080	CmoCh16G002270	Cucurbita moschata (Rifu)	cmolsiB312
Lsi07G001080	Cla010723	Watermelon (97103) v1	lsiwmB441
Lsi07G001080	MELO3C017654	Melon (DHL92) v3.5.1	lsimeB454
Lsi07G001080	ClCG07G016890	Watermelon (Charleston Gray)	lsiwcgB407
Lsi07G001080	MELO3C017654.2	Melon (DHL92) v3.6.1	lsimedB471
Lsi07G001080	Cla97C07G143910	Watermelon (97103) v2	lsiwmbB406
Lsi07G001080	Bhi01G002034	Wax gourd	lsiwgoB549
Lsi07G001080	Cp4.1LG01g03620	Cucurbita pepo (Zucchini)	cpelsiB374
Lsi07G001080	Cp4.1LG14g05380	Cucurbita pepo (Zucchini)	cpelsiB182
Lsi07G001080	Carg16752	Silver-seed gourd	carlsiB792
Lsi07G001080	Carg08027	Silver-seed gourd	carlsiB347
Lsi07G001080	CsaV3_4G004120	Cucumber (Chinese Long) v3	cuclsiB322

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi07G001080	Cucumber (Gy14) v1	cgylsiB115
Lsi07G001080	Cucumber (Gy14) v2	cgyblsiB277