Lsi06G016780 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G016780
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Cytoplasmic dynein 2 light intermediate chain 1
Location	chr06 : 26979373 .. 26982572 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGGATTTGGGAATGGACTGCGTGTACTTCGGAGACAGATGCATCTCCTTCAGCAACGTGAAGGTCCATCAGAGGTTCTAAAGGGAAAGATCGCAGAGTTGGAGAGATTTAGGAAGAGGAAGAAAAGTATGAAGAAGGATCAGTTCATTGTGGACGTTCCTGAATCAAAATCCTTCCTTGACACTGCTTCTATGCCCATGATTCTCACTGCTGTTGGAGTTGCTCTCTTTGCTAAACTCCTTATGATGGTATGCGCTACTCCTCAACTTGGTTCTGTTTCCTCTATTTCCCTTATTTGATTATTTTATTGAGTATACTGAAATATCATGAGACTTTTGTGTGTAGTAGTGTAGGACATGTATACATTTGTACGTGGGTTATGTTTGCAGGAAAGGAAAGAAACTTGTTGGAGAAGTGGGTTTTCATTTTTTATTTTATTTATTTTTTCAATCTCTCCCAAACAGAGACATTTCGATTTAAAAATGGAAGAAGATCTGGACCGAGAAAAATGCAATCAATTATAATCAAACTCTGTTATTTTGATTTACATTTCGCCTGTTTTCTGTGGTGAAAGAAGCAGATTTCTGTGAGAAATGATTCTTGGAGGGGAAAACCTGGATAAAAAATTTCTAGCACTGACGGTTTATTTTCTAGATGGATATTGCAGTCTCTATTCTTTCTGTTCTGATTGTCTTCATCCAGACTTTTGTGTGTAGTAGTGTAGGACATGTAAACATGTTCAAGATTTTTCCTCAGCTTTTCTCTTAATTTCAGGCGGCAATTTCTTAACCCAACCCCTATGTTGTTTCTTTGCCTTTCGACTACTTCTCTTCAACAACCCAAAGTGCATTCGGCTCTTTTACTTTCATCGATTTTGTTTTTGGATCATTCAACCATGATCAAGAAAACCCTTGGTTTGATCTCAAATTGGTTTGATCATTGATGTTCATCTTCTTGAGCAAGATTTTTGTAGTGTCAATGGTGATAACGCCATATCCCAAGCTTGAAATTTCCAAAGACCTTTGTTTTTCAAAGTATTGAGAATAGACAAAAAGGCAAAAAAGTAAAAAAAAAAAAGTGATTAAGAAGTAGGTGTCCAATTCGTGTGCAATGTGAATTAGACAGAAATGAGAAAATTGTCCATCATGTGCTTTAATGGGTGATTCAAACGAAAAGTTAACAAAGGGTCTACATTTCAACACTAATGCAAGTTTGGGGTTCAATTTGAATAAATAAATCAGGAGTGTCCGAAACAGTTTGTGCATACCTTAACTATTCTTACAAGACAGCCGCCTAACTTTACATTTAGTTATCAAGGAAACTATGACTTGAATCCATTTCTTCTCGGCCCTTTATTACTTCTTGGCTCTTATTATCCACTAGGTCAAGGTCAACCCATGGTGATTGACTTCAATTTTTTCCTACGTCCAATGTACTCCTCGATTGTCTTGGCTGTGTGGCTCATCTCCCTCTGTCTCTCTCTTTTGACATTAAAATTTTATCTGTTCTTCCTTAGCCTTGAAACATGAAATTGAAATGAGTAGTGTTTAGATTTTAGTGTGATGAGTAGTTGTCTTTCCTCATTTTGTCCGGGGAAGTCTCTGATATGGAGGTTAAGTGTGAACCATAAGTTTTATGCCGCCTGCAAACAATTATTTATATTGCCAATGGGGAAATTGAGAATCTCAAAATAAAAGAACCAATTAAAAGGATACTCTAGTGGATGTGGTTGGTTTGCTTTATTCTATTTTATTAATGCCACCGGTTTGCCTGCGCTTGGAAGAATCTTGTGAACATATCCTGTCATTCAATTAATGTTTTGCAATGTTTTTAGGAAAATTTTAAGCCCTTTTAATGAAATTATGATCTTATTTTATCATGTACTGAATGTATAGTATAAGTTCAGTGCCCATTGATGGTTGGGTTTATTTCAAGCAAATCTTGTTTATCCCTTTTCATGTGTACCTGTTCTTATCCAAAAAATGTGTACCCGTGCTTTTTTTTCAGTATGATGAGTCAAGATCTGAAGAGTTGATAGAGCGCAAAATAAAGAATGCTCCACCAGGTCAAGGAACTGTGAGGATGCTTAGTCGTGAGGAGTGGGAGGAAATTCGAGATGTTCGACCAAGAACTCCGTTTGAATCCAAGCTTGCTCGTCCAAATGCAAGAATCAGAACTGGAGAACCTTTACACATGGTAAGGCTGTTGTATCACTGATCTCATATGGAAATTGATCATGTGAAAGCCTACACATTTCTCATCTTTTATCCCATCCTAAGTGATGGTAATGTGCTTCCCTGTTTCCATCCTAGTTACTGATTTGCTTGATCTACTTCGTTGAAACTTCCCAGTTTCTATCAAATATGTGGATACATTTTCAACTACTGCAGTTAATTTTAAAATAGGAGGCCTAAGCCTAACAGATAAATTTTTTTAAAAAAATACTTGCTTTGGCAATCGTTTCATGCAGGAAGATTTGAAGGATTGGACAATTGATGTGCTGTCAGATGCACTTACTCGAGCTGAAGAAAGTGTTAGGCATGGTTCCACTTCCAAGTAACCTCAGAGACTGAAGAGTCTTCTCCAAGATTTGGAGGATTTCAGACTCATCTCAACTGGTGTTTGGTCATGCAAAATTGTTTGAGGTTTAACTCCTGAAAATTGTGCTTTGAAGGATGGTTAGTAACACATTTAAAAATTAGCTTGTTTCTATGTTTGATCTGATATTGATCATGTAGGTCTCCTGTTGGTATTTTATGTAGAAGATTATCAGGTAGCGATGGGTCAGGATAGAGAAAGTAGGTAATAAATTGTGACTGAATTGCAAATTAGTGGTGGAAATTGAAAAGCCTGGATAGTGTTGGATGGTTTATGCAATTCCATAAACAAGGGGTTTGGCGGCAGAAACCAGTTGTGATCGTCCTATTATTTGTATCTTGGTTAAACATGTTAACCTCGCAAAGTCATTCAAATTTATTTATTTATTTAGTCGAACAAGTAGAGCGTTTGGCAATTTTGATTTTTGGTTGCTTTTTTAATTGTTTGGTTGTCTCAGGGGAAAACAACCATTGTTTGGTTGCTAAATTTTATTATTATTATTATTATTATTAACAGCAGCTGGTGTATAAAAACCATGATTAATTTCATAATTTTAGACCATAGACATTTTACTCATAAAATGAATTCCATGTCAAAG

mRNA sequence

ATGACAGGATTTGGGAATGGACTGCGTGTACTTCGGAGACAGATGCATCTCCTTCAGCAACGTGAAGGTCCATCAGAGGTTCTAAAGGGAAAGATCGCAGAGTTGGAGAGATTTAGGAAGAGGAAGAAAAGTATGAAGAAGGATCAGTTCATTGTGGACGTTCCTGAATCAAAATCCTTCCTTGACACTGCTTCTATGCCCATGATTCTCACTGCTGTTGGAGTTGCTCTCTTTGCTAAACTCCTTATGATGTATGATGAGTCAAGATCTGAAGAGTTGATAGAGCGCAAAATAAAGAATGCTCCACCAGGTCAAGGAACTGTGAGGATGCTTAGTCGTGAGGAGTGGGAGGAAATTCGAGATGTTCGACCAAGAACTCCGTTTGAATCCAAGCTTGCTCGTCCAAATGCAAGAATCAGAACTGGAGAACCTTTACACATGGAAGATTTGAAGGATTGGACAATTGATGTGCTGTCAGATGCACTTACTCGAGCTGAAGAAAGTGTTAGGCATGGTTCCACTTCCAAGTCTCCTGTTGGTATTTTATGTAGAAGATTATCAGGTAGCGATGGGTCAGGATAGAGAAAGTAGGTAATAAATTGTGACTGAATTGCAAATTAGTGGTGGAAATTGAAAAGCCTGGATAGTGTTGGATGGTTTATGCAATTCCATAAACAAGGGGTTTGGCGGCAGAAACCAGTTGTGATCGTCCTATTATTTGTATCTTGGTTAAACATGTTAACCTCGCAAAGTCATTCAAATTTATTTATTTATTTAGTCGAACAAGTAGAGCGTTTGGCAATTTTGATTTTTGGTTGCTTTTTTAATTGTTTGGTTGTCTCAGGGGAAAACAACCATTGTTTGGTTGCTAAATTTTATTATTATTATTATTATTATTAACAGCAGCTGGTGTATAAAAACCATGATTAATTTCATAATTTTAGACCATAGACATTTTACTCATAAAATGAATTCCATGTCAAAG

Coding sequence (CDS)

ATGACAGGATTTGGGAATGGACTGCGTGTACTTCGGAGACAGATGCATCTCCTTCAGCAACGTGAAGGTCCATCAGAGGTTCTAAAGGGAAAGATCGCAGAGTTGGAGAGATTTAGGAAGAGGAAGAAAAGTATGAAGAAGGATCAGTTCATTGTGGACGTTCCTGAATCAAAATCCTTCCTTGACACTGCTTCTATGCCCATGATTCTCACTGCTGTTGGAGTTGCTCTCTTTGCTAAACTCCTTATGATGTATGATGAGTCAAGATCTGAAGAGTTGATAGAGCGCAAAATAAAGAATGCTCCACCAGGTCAAGGAACTGTGAGGATGCTTAGTCGTGAGGAGTGGGAGGAAATTCGAGATGTTCGACCAAGAACTCCGTTTGAATCCAAGCTTGCTCGTCCAAATGCAAGAATCAGAACTGGAGAACCTTTACACATGGAAGATTTGAAGGATTGGACAATTGATGTGCTGTCAGATGCACTTACTCGAGCTGAAGAAAGTGTTAGGCATGGTTCCACTTCCAAGTCTCCTGTTGGTATTTTATGTAGAAGATTATCAGGTAGCGATGGGTCAGGATAG

Protein sequence

MTGFGNGLRVLRRQMHLLQQREGPSEVLKGKIAELERFRKRKKSMKKDQFIVDVPESKSFLDTASMPMILTAVGVALFAKLLMMYDESRSEELIERKIKNAPPGQGTVRMLSREEWEEIRDVRPRTPFESKLARPNARIRTGEPLHMEDLKDWTIDVLSDALTRAEESVRHGSTSKSPVGILCRRLSGSDGSG

Homology

[Close]

BLAST of Lsi06G016780 vs. TrEMBL
Match: A0A0A0LR33_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G000630 PE=4 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 1.2e-83
Identity = 160/176 (90.91%), Postives = 169/176 (96.02%), Query Frame = 1


Query: 1   MTGFGNGLRVLRRQMHLLQQREGPSEVLKGKIAELERFRKRKKSMKKDQFIVDVPESKSF 60
           MTGFG+GLRV+ RQMHLL QREGPSEVLKGKIAELE+FRK K+S KKDQF VDVPES SF
Sbjct: 1   MTGFGHGLRVIGRQMHLLHQREGPSEVLKGKIAELEKFRKMKRSTKKDQFTVDVPESNSF 60

Query: 61  LDTASMPMILTAVGVALFAKLLMMYDESRSEELIERKIKNAPPGQGTVRMLSREEWEEIR 120
           LDT SMPMILTAVG+ALFAKLLMMYDESRSEELIERKIKNAPPGQGTVRMLSR+EWEEIR
Sbjct: 61  LDTPSMPMILTAVGIALFAKLLMMYDESRSEELIERKIKNAPPGQGTVRMLSRQEWEEIR 120

Query: 121 DVRPRTPFESKLARPNARIRTGEPLHMEDLKDWTIDVLSDALTRAEESVRHGSTSK 177
           +VRPRTPFESKLARPNARIRTGEPLHMEDLKDWT+DVLS+ALTRAEESVRHGSTSK
Sbjct: 121 EVRPRTPFESKLARPNARIRTGEPLHMEDLKDWTVDVLSNALTRAEESVRHGSTSK 176

[Close]

BLAST of Lsi06G016780 vs. TrEMBL
Match: A0A061F9Y0_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_032134 PE=4 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 4.2e-60
Identity = 118/156 (75.64%), Postives = 141/156 (90.38%), Query Frame = 1


Query: 12  RRQMHLLQQREGPSEVLKGKIAELERFRKRKKSMKKDQFIVDVPESKSFLDTASMPMILT 71
           RR +H L  R GPSE LK K+AE+E+ +KR+ ++KKDQ  V+VPES+SFLDTA++PM+L 
Sbjct: 82  RRWLHTLS-RAGPSETLKRKVAEMEKMKKRR-NLKKDQLFVEVPESRSFLDTATLPMVLA 141

Query: 72  AVGVALFAKLLMMYDESRSEELIERKIKNAPPGQGTVRMLSREEWEEIRDVRPRTPFESK 131
             G+ALFAKLLMM+DES+S+ELIERKIKNAPPGQGTVRMLSREEWEE R+VRPRTPFESK
Sbjct: 142 VAGIALFAKLLMMHDESKSQELIERKIKNAPPGQGTVRMLSREEWEEFREVRPRTPFESK 201

Query: 132 LARPNARIRTGEPLHMEDLKDWTIDVLSDALTRAEE 168
           LARPNA++RTGEPLHMEDLK+WTIDVL+DALTRAE+
Sbjct: 202 LARPNAKVRTGEPLHMEDLKNWTIDVLTDALTRAED 235

[Close]

BLAST of Lsi06G016780 vs. TrEMBL
Match: V4UA82_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016955mg PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 1.2e-59
Identity = 121/173 (69.94%), Postives = 144/173 (83.24%), Query Frame = 1


Query: 1   MTGFGNGLRVLRRQMHLLQQREGPSEVLKGKIAELERFRKRKKSMKKDQFIVDVPESKSF 60
           M G G  L +++R++H L  R+GPSE LK ++AELE+ RKRK   K D F V+VPESKSF
Sbjct: 1   MFGVGQRLFLVQRRLHTLS-RDGPSESLKKRVAELEKTRKRKNVKKNDVF-VEVPESKSF 60

Query: 61  LDTASMPMILTAVGVALFAKLLMMYDESRSEELIERKIKNAPPGQGTVRMLSREEWEEIR 120
           LDTAS+PM LT   +ALFAKLLMMYD+S+S+E+IE KIKNAPPGQGT+RML+ EEWEE +
Sbjct: 61  LDTASLPMFLTVAAIALFAKLLMMYDDSKSQEMIEHKIKNAPPGQGTMRMLTHEEWEEFQ 120

Query: 121 DVRPRTPFESKLARPNARIRTGEPLHMEDLKDWTIDVLSDALTRAEESVRHGS 174
           +VRPRTPFESKLARPNA++RTGEPL M DLKDWTIDVL+DALTRAEE  RH S
Sbjct: 121 EVRPRTPFESKLARPNAKLRTGEPLRMGDLKDWTIDVLTDALTRAEECARHNS 171

[Close]

BLAST of Lsi06G016780 vs. TrEMBL
Match: A0A0D2NIA1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G046300 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 3.5e-59
Identity = 114/162 (70.37%), Postives = 141/162 (87.04%), Query Frame = 1


Query: 10  VLRRQMHLLQQREGPSEVLKGKIAELERFRKRKKSMKKDQFIVDVPESKSFLDTASMPMI 69
           + RR +H L + +GPSE LK K+ E+E+ RKR ++ KK Q  V+VPES+SFLDTA++PM 
Sbjct: 10  LFRRLLHTLSRDDGPSETLKKKVPEIEKTRKR-RNPKKAQLFVEVPESRSFLDTATLPMY 69

Query: 70  LTAVGVALFAKLLMMYDESRSEELIERKIKNAPPGQGTVRMLSREEWEEIRDVRPRTPFE 129
           L   G+ALFAKLLMM+DES+S+E+IERKIKNAPPGQGT+RML+REEWEEIR+VRPRTPFE
Sbjct: 70  LAVAGIALFAKLLMMHDESKSQEMIERKIKNAPPGQGTIRMLTREEWEEIREVRPRTPFE 129

Query: 130 SKLARPNARIRTGEPLHMEDLKDWTIDVLSDALTRAEESVRH 172
           SKLARPNA+IRTGEPLHMED+K+WTID+L+DALTRAE   +H
Sbjct: 130 SKLARPNAKIRTGEPLHMEDMKNWTIDILTDALTRAENCSKH 170

[Close]

BLAST of Lsi06G016780 vs. TrEMBL
Match: A0A0D2Q0T7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G046300 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 3.5e-59
Identity = 114/162 (70.37%), Postives = 141/162 (87.04%), Query Frame = 1


Query: 10  VLRRQMHLLQQREGPSEVLKGKIAELERFRKRKKSMKKDQFIVDVPESKSFLDTASMPMI 69
           + RR +H L + +GPSE LK K+ E+E+ RKR ++ KK Q  V+VPES+SFLDTA++PM 
Sbjct: 13  LFRRLLHTLSRDDGPSETLKKKVPEIEKTRKR-RNPKKAQLFVEVPESRSFLDTATLPMY 72

Query: 70  LTAVGVALFAKLLMMYDESRSEELIERKIKNAPPGQGTVRMLSREEWEEIRDVRPRTPFE 129
           L   G+ALFAKLLMM+DES+S+E+IERKIKNAPPGQGT+RML+REEWEEIR+VRPRTPFE
Sbjct: 73  LAVAGIALFAKLLMMHDESKSQEMIERKIKNAPPGQGTIRMLTREEWEEIREVRPRTPFE 132

Query: 130 SKLARPNARIRTGEPLHMEDLKDWTIDVLSDALTRAEESVRH 172
           SKLARPNA+IRTGEPLHMED+K+WTID+L+DALTRAE   +H
Sbjct: 133 SKLARPNAKIRTGEPLHMEDMKNWTIDILTDALTRAENCSKH 173

[Close]

BLAST of Lsi06G016780 vs. TAIR10
Match: AT2G04340.1 (AT2G04340.1 unknown protein)

HSP 1 Score: 216.5 bits (550), Expect = 1.5e-56
Identity = 107/165 (64.85%), Postives = 140/165 (84.85%), Query Frame = 1


Query: 10  VLRRQMHLLQQREGPSEVLKGKIAELERFRKRKKSMKKDQFIVDVPESKSFLDTASMPMI 69
           +LRR+ H     + P+E L+ KIA+L++ +KR+  + K+QF+V+VPES+S+LDTA+MPM 
Sbjct: 11  LLRRRFHS-PSNDAPTETLRKKIADLQKSKKRRNPI-KNQFLVEVPESRSYLDTATMPMF 70

Query: 70  LTAVGVALFAKLLMMYDESRSEELIERKIKNAPPGQGTVRMLSREEWEEIRDVRPRTPFE 129
           L  VG+ALFAK+LMM D+S+S+E+IERKIKNAP GQGTVRM+ REEW+E R+VRPRTPFE
Sbjct: 71  LAVVGIALFAKVLMMIDDSKSQEMIERKIKNAPQGQGTVRMIDREEWDEFREVRPRTPFE 130

Query: 130 SKLARPNARIRTGEPLHMEDLKDWTIDVLSDALTRAEESVRHGST 175
           SKLARPNA+IRTGEP+  +DLK+WTIDVL++AL R EESVR GS+
Sbjct: 131 SKLARPNAQIRTGEPVRKDDLKNWTIDVLTNALERTEESVRRGSS 173

[Close]

BLAST of Lsi06G016780 vs. NCBI nr
Match: gi|659128795|ref|XP_008464374.1| (PREDICTED: uncharacterized protein LOC103502279 isoform X1 [Cucumis melo])

HSP 1 Score: 324.3 bits (830), Expect = 1.4e-85
Identity = 163/176 (92.61%), Postives = 173/176 (98.30%), Query Frame = 1


Query: 1   MTGFGNGLRVLRRQMHLLQQREGPSEVLKGKIAELERFRKRKKSMKKDQFIVDVPESKSF 60
           MTGFG+GLRV+ RQ+HLLQQREGPSEVL+GKIAELE+FRKRKKSMKKDQFIVDVPES SF
Sbjct: 1   MTGFGHGLRVIGRQVHLLQQREGPSEVLRGKIAELEKFRKRKKSMKKDQFIVDVPESNSF 60

Query: 61  LDTASMPMILTAVGVALFAKLLMMYDESRSEELIERKIKNAPPGQGTVRMLSREEWEEIR 120
           LDT SMPMILTAVG+ALFAKLLMMYDESRSEELIERKIKNAPPGQGTVRMLSREEWEEIR
Sbjct: 61  LDTPSMPMILTAVGIALFAKLLMMYDESRSEELIERKIKNAPPGQGTVRMLSREEWEEIR 120

Query: 121 DVRPRTPFESKLARPNARIRTGEPLHMEDLKDWTIDVLSDALTRAEESVRHGSTSK 177
           +VRPRTPFESKLARPNARIRTGEPLHMEDLKDWT+DV+S+ALTRAEESVRHGSTSK
Sbjct: 121 EVRPRTPFESKLARPNARIRTGEPLHMEDLKDWTVDVVSNALTRAEESVRHGSTSK 176

[Close]

BLAST of Lsi06G016780 vs. NCBI nr
Match: gi|449440500|ref|XP_004138022.1| (PREDICTED: uncharacterized protein LOC101207324 [Cucumis sativus])

HSP 1 Score: 317.4 bits (812), Expect = 1.7e-83
Identity = 160/176 (90.91%), Postives = 169/176 (96.02%), Query Frame = 1


Query: 1   MTGFGNGLRVLRRQMHLLQQREGPSEVLKGKIAELERFRKRKKSMKKDQFIVDVPESKSF 60
           MTGFG+GLRV+ RQMHLL QREGPSEVLKGKIAELE+FRK K+S KKDQF VDVPES SF
Sbjct: 1   MTGFGHGLRVIGRQMHLLHQREGPSEVLKGKIAELEKFRKMKRSTKKDQFTVDVPESNSF 60

Query: 61  LDTASMPMILTAVGVALFAKLLMMYDESRSEELIERKIKNAPPGQGTVRMLSREEWEEIR 120
           LDT SMPMILTAVG+ALFAKLLMMYDESRSEELIERKIKNAPPGQGTVRMLSR+EWEEIR
Sbjct: 61  LDTPSMPMILTAVGIALFAKLLMMYDESRSEELIERKIKNAPPGQGTVRMLSRQEWEEIR 120

Query: 121 DVRPRTPFESKLARPNARIRTGEPLHMEDLKDWTIDVLSDALTRAEESVRHGSTSK 177
           +VRPRTPFESKLARPNARIRTGEPLHMEDLKDWT+DVLS+ALTRAEESVRHGSTSK
Sbjct: 121 EVRPRTPFESKLARPNARIRTGEPLHMEDLKDWTVDVLSNALTRAEESVRHGSTSK 176

[Close]

BLAST of Lsi06G016780 vs. NCBI nr
Match: gi|568830274|ref|XP_006469426.1| (PREDICTED: uncharacterized protein LOC102609354 [Citrus sinensis])

HSP 1 Score: 239.6 bits (610), Expect = 4.6e-60
Identity = 122/173 (70.52%), Postives = 145/173 (83.82%), Query Frame = 1


Query: 1   MTGFGNGLRVLRRQMHLLQQREGPSEVLKGKIAELERFRKRKKSMKKDQFIVDVPESKSF 60
           M G G  L +++R++H L  R+GPSE LK ++AELE+ RKRK   K D F V+VPESKSF
Sbjct: 1   MFGVGQRLFLVQRRLHTLS-RDGPSESLKKRVAELEKTRKRKNVKKNDVF-VEVPESKSF 60

Query: 61  LDTASMPMILTAVGVALFAKLLMMYDESRSEELIERKIKNAPPGQGTVRMLSREEWEEIR 120
           LDTAS+PM LT   +ALFAKLLMMYD+S+S+E+IE KIKNAPPGQGT+RML+REEWEE +
Sbjct: 61  LDTASLPMFLTVAAIALFAKLLMMYDDSKSQEMIEHKIKNAPPGQGTMRMLTREEWEEFQ 120

Query: 121 DVRPRTPFESKLARPNARIRTGEPLHMEDLKDWTIDVLSDALTRAEESVRHGS 174
           +VRPRTPFESKLARPNA++RTGEPL M DLKDWTIDVL+DALTRAEE  RH S
Sbjct: 121 EVRPRTPFESKLARPNAKLRTGEPLRMGDLKDWTIDVLTDALTRAEECARHNS 171

[Close]

BLAST of Lsi06G016780 vs. NCBI nr
Match: gi|590611105|ref|XP_007022007.1| (Uncharacterized protein TCM_032134 [Theobroma cacao])

HSP 1 Score: 239.2 bits (609), Expect = 6.0e-60
Identity = 118/156 (75.64%), Postives = 141/156 (90.38%), Query Frame = 1


Query: 12  RRQMHLLQQREGPSEVLKGKIAELERFRKRKKSMKKDQFIVDVPESKSFLDTASMPMILT 71
           RR +H L  R GPSE LK K+AE+E+ +KR+ ++KKDQ  V+VPES+SFLDTA++PM+L 
Sbjct: 82  RRWLHTLS-RAGPSETLKRKVAEMEKMKKRR-NLKKDQLFVEVPESRSFLDTATLPMVLA 141

Query: 72  AVGVALFAKLLMMYDESRSEELIERKIKNAPPGQGTVRMLSREEWEEIRDVRPRTPFESK 131
             G+ALFAKLLMM+DES+S+ELIERKIKNAPPGQGTVRMLSREEWEE R+VRPRTPFESK
Sbjct: 142 VAGIALFAKLLMMHDESKSQELIERKIKNAPPGQGTVRMLSREEWEEFREVRPRTPFESK 201

Query: 132 LARPNARIRTGEPLHMEDLKDWTIDVLSDALTRAEE 168
           LARPNA++RTGEPLHMEDLK+WTIDVL+DALTRAE+
Sbjct: 202 LARPNAKVRTGEPLHMEDLKNWTIDVLTDALTRAED 235

[Close]

BLAST of Lsi06G016780 vs. NCBI nr
Match: gi|567911033|ref|XP_006447830.1| (hypothetical protein CICLE_v10016955mg [Citrus clementina])

HSP 1 Score: 237.7 bits (605), Expect = 1.7e-59
Identity = 121/173 (69.94%), Postives = 144/173 (83.24%), Query Frame = 1


Query: 1   MTGFGNGLRVLRRQMHLLQQREGPSEVLKGKIAELERFRKRKKSMKKDQFIVDVPESKSF 60
           M G G  L +++R++H L  R+GPSE LK ++AELE+ RKRK   K D F V+VPESKSF
Sbjct: 1   MFGVGQRLFLVQRRLHTLS-RDGPSESLKKRVAELEKTRKRKNVKKNDVF-VEVPESKSF 60

Query: 61  LDTASMPMILTAVGVALFAKLLMMYDESRSEELIERKIKNAPPGQGTVRMLSREEWEEIR 120
           LDTAS+PM LT   +ALFAKLLMMYD+S+S+E+IE KIKNAPPGQGT+RML+ EEWEE +
Sbjct: 61  LDTASLPMFLTVAAIALFAKLLMMYDDSKSQEMIEHKIKNAPPGQGTMRMLTHEEWEEFQ 120

Query: 121 DVRPRTPFESKLARPNARIRTGEPLHMEDLKDWTIDVLSDALTRAEESVRHGS 174
           +VRPRTPFESKLARPNA++RTGEPL M DLKDWTIDVL+DALTRAEE  RH S
Sbjct: 121 EVRPRTPFESKLARPNAKLRTGEPLRMGDLKDWTIDVLTDALTRAEECARHNS 171

The following BLAST results are available for this feature:

BLAST of Lsi06G016780 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi06G016780 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LR33_CUCSA	1.2e-83	90.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G000630 PE=4 SV=1	[more]
A0A061F9Y0_THECC	4.2e-60	75.64	Uncharacterized protein OS=Theobroma cacao GN=TCM_032134 PE=4 SV=1	[more]
V4UA82_9ROSI	1.2e-59	69.94	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016955mg PE=4 SV=1	[more]
A0A0D2NIA1_GOSRA	3.5e-59	70.37	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G046300 PE=4 SV=1	[more]
A0A0D2Q0T7_GOSRA	3.5e-59	70.37	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G046300 PE=4 SV=1	[more]

BLAST of Lsi06G016780 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G04340.1	1.5e-56	64.85	unknown protein	[more]

BLAST of Lsi06G016780 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659128795\|ref\|XP_008464374.1\|	1.4e-85	92.61	PREDICTED: uncharacterized protein LOC103502279 isoform X1 [Cucumis melo]	[more]
gi\|449440500\|ref\|XP_004138022.1\|	1.7e-83	90.91	PREDICTED: uncharacterized protein LOC101207324 [Cucumis sativus]	[more]
gi\|568830274\|ref\|XP_006469426.1\|	4.6e-60	70.52	PREDICTED: uncharacterized protein LOC102609354 [Citrus sinensis]	[more]
gi\|590611105\|ref\|XP_007022007.1\|	6.0e-60	75.64	Uncharacterized protein TCM_032134 [Theobroma cacao]	[more]
gi\|567911033\|ref\|XP_006447830.1\|	1.7e-59	69.94	hypothetical protein CICLE_v10016955mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G016780.1	Lsi06G016780.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 28..48 scor
None	No IPR available	PANTHER	PTHR36008	FAMILY NOT NAMED	coord: 1..174 score: 3.6
None	No IPR available	PANTHER	PTHR36008:SF1	SUBFAMILY NOT NAMED	coord: 1..174 score: 3.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi06G016780	Csa1G000630	Cucumber (Chinese Long) v2	culsiB070
Lsi06G016780	CSPI01G00130	Wild cucumber (PI 183967)	cpilsiB070
Lsi06G016780	CmoCh10G000190	Cucurbita moschata (Rifu)	cmolsiB058
Lsi06G016780	Cla019317	Watermelon (97103) v1	lsiwmB414
Lsi06G016780	MELO3C026167	Melon (DHL92) v3.5.1	lsimeB397
Lsi06G016780	ClCG06G018310	Watermelon (Charleston Gray)	lsiwcgB372
Lsi06G016780	MELO3C026167.2	Melon (DHL92) v3.6.1	lsimedB419
Lsi06G016780	Cla97C06G128070	Watermelon (97103) v2	lsiwmbB374
Lsi06G016780	Bhi02G000473	Wax gourd	lsiwgoB525
Lsi06G016780	Cp4.1LG18g09420	Cucurbita pepo (Zucchini)	cpelsiB298
Lsi06G016780	CsGy1G000100	Cucumber (Gy14) v2	cgyblsiB067
Lsi06G016780	CsaV3_1G000130	Cucumber (Chinese Long) v3	cuclsiB081

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G016780	Bottle gourd (USVL1VR-Ls)	lsilsiB111
Lsi06G016780	Cucumber (Gy14) v1	cgylsiB250
Lsi06G016780	Cucurbita maxima (Rimu)	cmalsiB072
Lsi06G016780	Cucurbita maxima (Rimu)	cmalsiB144
Lsi06G016780	Cucurbita maxima (Rimu)	cmalsiB219
Lsi06G016780	Cucurbita maxima (Rimu)	cmalsiB359
Lsi06G016780	Cucurbita moschata (Rifu)	cmolsiB128
Lsi06G016780	Cucurbita moschata (Rifu)	cmolsiB207
Lsi06G016780	Cucurbita pepo (Zucchini)	cpelsiB433
Lsi06G016780	Cucurbita pepo (Zucchini)	cpelsiB556
Lsi06G016780	Wild cucumber (PI 183967)	cpilsiB068
Lsi06G016780	Wild cucumber (PI 183967)	cpilsiB224
Lsi06G016780	Cucumber (Chinese Long) v2	culsiB067
Lsi06G016780	Cucumber (Chinese Long) v2	culsiB225
Lsi06G016780	Melon (DHL92) v3.5.1	lsimeB392
Lsi06G016780	Watermelon (Charleston Gray)	lsiwcgB363
Lsi06G016780	Watermelon (97103) v1	lsiwmB394
Lsi06G016780	Cucumber (Gy14) v2	cgyblsiB064
Lsi06G016780	Cucumber (Gy14) v2	cgyblsiB214
Lsi06G016780	Melon (DHL92) v3.6.1	lsimedB414
Lsi06G016780	Silver-seed gourd	carlsiB331
Lsi06G016780	Silver-seed gourd	carlsiB554
Lsi06G016780	Cucumber (Chinese Long) v3	cuclsiB077
Lsi06G016780	Cucumber (Chinese Long) v3	cuclsiB247
Lsi06G016780	Watermelon (97103) v2	lsiwmbB364
Lsi06G016780	Wax gourd	lsiwgoB491