CmoCh10G000190 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh10G000190
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Cytoplasmic dynein 2 light intermediate chain 1
Location	Cmo_Chr10 : 125948 .. 129106 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACCAGGCGATACCTTTCCGCTTTCTGTTTGTGGGGGTGGTGGATGTTTGCTTTTAAAAATTAAAATTTATTATTTACTATTATTATTATTCTTTTTCGGGAGCTGGAGGAAGAAGACGAAGATCTCGATCTCGATCTTCATCTAAGTCCACTTTCCCTTTTGCCTCCAAAATATTAGTAATATTCCCTCTACTTCTTTATGCACTTTCTCAAATTAAATCAAATTAAATCAAATTAAATCAAATTAAGAAAGGATGAAAGAATGAAATAACGAAAGTTTGTTCGCTCGCTCTCTCGCTTCCTTCACGCTGGCTCCCCATCCATTTCAGTCGCTCATTGTCGCCACCGTCACCGCCCACTTTCTTCTGCTCGTGCCGCCGCGTCCTCCCTCTTAGCGAGTTCCACTGCTTGTCTTCTCTCTTCTTATCACTGGTATTCTCCCTACTCCATCTACGTCTTTTTTCTCTCTCCAAAAACTCAAATTTGGACTTGTCTACTGAAACAATGGAGGAGTTGTACTTATTTCTTCTTCAATCAGCAGAACAGCAACGAAAATAAATTAGCCTTGCGGAAAATTACGACTTTTCGAACTTATCGTGACCTGCTTTTTTTTATTTCCGGCATATGTCTATTATCTTTTAGGGTTTGATAATCTGTATATCTCTTTTGTCTCTACTGAAATTTTCCTTGTTTCTAGTCTCCTAAATCTTCCAAAGCACCACCCCTATGAATATTCCTGCATCGCCCTTCTTCTCTACTTATCTAGAACTAGTTGGTATTCCAATTTTTCCTTACAAACAAATGCACAGATATTCGAATTAAAGTAGTCTGTTTTATTTCGGGAACTTACTCCTCCATGCCTGGTGGTTTATGGCTCCTTCAAGCCAAACGCACACCACAGCTTAATGGTTTTTCATATTTACTCAAGCTTGTAACTTTGAGTTGATACTAAGGGAAGATGTCTTACAATAGATCTATTTGGATTTCAAGAAGCAAGCGGATCATTCTCAATTCACCAACTTCAACTGTGAGGGCACCAACAAACTTACAAACCTTACTCGATTACAAGCGCAATATATGTGTGGTCTACTTGGGCAATTCTCATTTGGGAATTGAAGTAATTTGCTTAGGAAAAAAAAAGAAAAAGATTCCATTAGACATGACAGGATTTGGCTATGGACTGCGTGTACTTCGGAGACAGATGCATCTCCTTCAGCAACGTGAATGTCCATCAGAGGCTCTAAAGGTAAAGATCGCCGAGTTGGAGAGATTTAGGAAGAAGAAGAAAAGTGTCAAGCAGTTCATTGTGGACGTTCCTGAATCCAAATCCTTTCTTGACACTGCTTCTATGCCCATGATTCTAACTGCGGTTGGAGTTGCTCTCTTTGCTAAACTCCTTATGATGGTATGCCCTACTCAACTTGGTTCTCATTTTTGTTCCTCCATTGCCTTTATTTTATTGAGTAAAATGAAATATAATGAGATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGTAGTCTAGGACATGTATAGAAATCTCAATAAGAATAGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTGTGAGATTCTCCAACTCTGTGAAATTGTTGAGGATCAGAAGCACACTCCAATGTAGGTGTGTGGACGAGGGAAATTTTTGTGGATGTAGTCGTTGTGCTTTATTTTGCATTTTATTAATTTCGCTAGTTTGCCTGTGCTCGTAAGAATCTAGGAGGACATATCCTGTCTCGTTCAATTAATGCTATGCTTTCAGGAAAATGTGAAGCCCATTTAATGAAATTATGACCTTATTTTAGCATATGCTGTGGATGTATAGTATAAGTTCAGTCCCCACCTGGGTTGGGTTTATTTCAAGCAAATCTTATTTATCTCTTTTAATAAGCGACTGTGCTTGTTTTCAGTATGATGAGTCAAGATCTGAAGAGCTGATAGAGCGCAAAATAAAGAATTCTCCGCCAGGTCAAGGAACTGTGAGGATGCTTAGTCGGGAGGAGTGGGAGGAAATGCGAGAGGTTCGACCAAGGACTCCGTTTGAATCCAAGCTTGCTCGTCCAAATGCAAGAATCAGAACTGGAGAACCTGTACACAGGGTAAGGCAGTTGTATCACTGATCTCATATAGGAATTGATGTGAAAGCCTCCACATTTCCCTTCTTTTATCCCATCCCCTAATGATGATAACGTGCTTCCCCATTTCCATGCTTATTACAGATTTGTGTGATCTACTTTGTTGAAACTTCCCAGTTTCTATCAGTTATATGGTTGAATTTTCAACTTCTGCAGTTGCCATTCAAATTTTCTAAATGATTTTTTGTCGTTAGAAGAGACACGACATCCTATGTAGTTTTATAGACCTGTAGATGAATGCGGCATGTGGATTGGGGGCAGGTTGACCAGGGAGTGATAATTTTTTAAAAGTACTTGCTTTGGCAATCGTTTCATGCAGGAAGATTTGAAGGACTGGACGGTTGATGTGCTATCAAATGCACTTACTCGGGCGGAAGAAAGTGTGAGGCATGATTCTACTTCCAAGTGACTTCTCCGAAGGGCCTTCTCATAGATGTGGAGACTTTCAAACTCATCTGAGTTGGTGTTTGGTCATGCAAAATTGTTTTGTTGGGCGCAACCCCTGAAAATGTGCCTTGAAGGATGGTTGGTTAGTAACACATTTCAAAAATTAGTTTGTTTCTATGTTTGATCTGATTTTGATCATGTAGATCTCCTACATGATGTTTTATGTAGAGAACAATCAGGTCGCCATGAACCGGGATAGAGATAGTAGGTAATTTGATTGTGGACTGAATCGCTAGTAGGTGGTGGAAAAGCTTAGATAGTGGTGAGTGGGTATATGCAATTCGGGGGTTTGGCGGCAGAAACTATTATTTGTATTTATTAGATTTGCAATTTTGATCTCCTTGTTTTAACGATGGATTCTTTTGTTCTCCTTCAACCCTTTTGTTCTTCCCTTATCTTTGAGGCAAACTGTGATTTATTTATTGGGATCTCCGAGACACTATTAATTGTTAAGGGCGGAGGGTTAAACGCAGGTCCTCGTCTCCGAATGCAGGGTACAGCCGAGTTGAATCTTTTATTAACCACGGTTAAGTTTGATACAGG

mRNA sequence

ATGAACCAGGCGATACCTTTCCGCTTTCTGTTTGTGGGGGTGGTGGATTTTGTTCGCTCGCTCTCTCGCTTCCTTCACGCTGGCTCCCCATCCATTTCAGTCGCTCATTGTCGCCACCGTCACCGCCCACTTTCTTCTGCTCGTGCCGCCGCGTCCTCCCTCTTAGCGAGTTCCACTGCTTGTCTTCTCTCTTCTTATCACTGATCTATTTGGATTTCAAGAAGCAAGCGGATCATTCTCAATTCACCAACTTCAACTGTGAGGGCACCAACAAACTTACAAACCTTACTCGATTACAAGCGCAATATATGTGTGGTCTACTTGGGCAATTCTCATTTGGGAATTGAAGTAATTTGCTTAGGAAAAAAAAAGAAAAAGATTCCATTAGACATGACAGGATTTGGCTATGGACTGCGTGTACTTCGGAGACAGATGCATCTCCTTCAGCAACGTGAATGTCCATCAGAGGCTCTAAAGGTAAAGATCGCCGAGTTGGAGAGATTTAGGAAGAAGAAGAAAAGTGTCAAGCAGTTCATTGTGGACGTTCCTGAATCCAAATCCTTTCTTGACACTGCTTCTATGCCCATGATTCTAACTGCGGTTGGAGTTGCTCTCTTTGCTAAACTCCTTATGATGTATGATGAGTCAAGATCTGAAGAGCTGATAGAGCGCAAAATAAAGAATTCTCCGCCAGGTCAAGGAACTGTGAGGATGCTTAGTCGGGAGGAGTGGGAGGAAATGCGAGAGGTTCGACCAAGGACTCCGTTTGAATCCAAGCTTGCTCGTCCAAATGCAAGAATCAGAACTGGAGAACCTGTACACAGGGAAGATTTGAAGGACTGGACGGTTGATGTGCTATCAAATGCACTTACTCGGGCGGAAGAAAGTGTGAGGCATGATTCTACTTCCAAGTGACTTCTCCGAAGGGCCTTCTCATAGATGTGGAGACTTTCAAACTCATCTGAGTTGGTGTTTGGTCATGCAAAATTGTTTTGTTGGGCGCAACCCCTGAAAATGTGCCTTGAAGGATGGTTGAGAACAATCAGGTCGCCATGAACCGGGATAGAGATAGTAGGTAATTTGATTGTGGACTGAATCGCTAGTAGGTGGTGGAAAAGCTTAGATAGTGGTGAGTGGGTATATGCAATTCGGGGGTTTGGCGGCAGAAACTATTATTTGTATTTATTAGATTTGCAATTTTGATCTCCTTGTTTTAACGATGGATTCTTTTGTTCTCCTTCAACCCTTTTGTTCTTCCCTTATCTTTGAGGCAAACTGTGATTTATTTATTGGGATCTCCGAGACACTATTAATTGTTAAGGGCGGAGGGTTAAACGCAGGTCCTCGTCTCCGAATGCAGGGTACAGCCGAGTTGAATCTTTTATTAACCACGGTTAAGTTTGATACAGG

Coding sequence (CDS)

ATGACAGGATTTGGCTATGGACTGCGTGTACTTCGGAGACAGATGCATCTCCTTCAGCAACGTGAATGTCCATCAGAGGCTCTAAAGGTAAAGATCGCCGAGTTGGAGAGATTTAGGAAGAAGAAGAAAAGTGTCAAGCAGTTCATTGTGGACGTTCCTGAATCCAAATCCTTTCTTGACACTGCTTCTATGCCCATGATTCTAACTGCGGTTGGAGTTGCTCTCTTTGCTAAACTCCTTATGATGTATGATGAGTCAAGATCTGAAGAGCTGATAGAGCGCAAAATAAAGAATTCTCCGCCAGGTCAAGGAACTGTGAGGATGCTTAGTCGGGAGGAGTGGGAGGAAATGCGAGAGGTTCGACCAAGGACTCCGTTTGAATCCAAGCTTGCTCGTCCAAATGCAAGAATCAGAACTGGAGAACCTGTACACAGGGAAGATTTGAAGGACTGGACGGTTGATGTGCTATCAAATGCACTTACTCGGGCGGAAGAAAGTGTGAGGCATGATTCTACTTCCAAGTGA

Homology

[Close]

BLAST of CmoCh10G000190 vs. TrEMBL
Match: A0A0A0LR33_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G000630 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 3.8e-76
Identity = 153/176 (86.93%), Postives = 162/176 (92.05%), Query Frame = 1


Query: 1   MTGFGYGLRVLRRQMHLLQQRECPSEALKVKIAELERFRKKKKSVK--QFIVDVPESKSF 60
           MTGFG+GLRV+ RQMHLL QRE PSE LK KIAELE+FRK K+S K  QF VDVPES SF
Sbjct: 1   MTGFGHGLRVIGRQMHLLHQREGPSEVLKGKIAELEKFRKMKRSTKKDQFTVDVPESNSF 60

Query: 61  LDTASMPMILTAVGVALFAKLLMMYDESRSEELIERKIKNSPPGQGTVRMLSREEWEEMR 120
           LDT SMPMILTAVG+ALFAKLLMMYDESRSEELIERKIKN+PPGQGTVRMLSR+EWEE+R
Sbjct: 61  LDTPSMPMILTAVGIALFAKLLMMYDESRSEELIERKIKNAPPGQGTVRMLSRQEWEEIR 120

Query: 121 EVRPRTPFESKLARPNARIRTGEPVHREDLKDWTVDVLSNALTRAEESVRHDSTSK 175
           EVRPRTPFESKLARPNARIRTGEP+H EDLKDWTVDVLSNALTRAEESVRH STSK
Sbjct: 121 EVRPRTPFESKLARPNARIRTGEPLHMEDLKDWTVDVLSNALTRAEESVRHGSTSK 176

[Close]

BLAST of CmoCh10G000190 vs. TrEMBL
Match: V4UA82_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016955mg PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 8.1e-55
Identity = 113/172 (65.70%), Postives = 143/172 (83.14%), Query Frame = 1


Query: 1   MTGFGYGLRVLRRQMHLLQQRECPSEALKVKIAELERFRKKKKSVKQFI-VDVPESKSFL 60
           M G G  L +++R++H L  R+ PSE+LK ++AELE+ RK+K   K  + V+VPESKSFL
Sbjct: 1   MFGVGQRLFLVQRRLHTLS-RDGPSESLKKRVAELEKTRKRKNVKKNDVFVEVPESKSFL 60

Query: 61  DTASMPMILTAVGVALFAKLLMMYDESRSEELIERKIKNSPPGQGTVRMLSREEWEEMRE 120
           DTAS+PM LT   +ALFAKLLMMYD+S+S+E+IE KIKN+PPGQGT+RML+ EEWEE +E
Sbjct: 61  DTASLPMFLTVAAIALFAKLLMMYDDSKSQEMIEHKIKNAPPGQGTMRMLTHEEWEEFQE 120

Query: 121 VRPRTPFESKLARPNARIRTGEPVHREDLKDWTVDVLSNALTRAEESVRHDS 172
           VRPRTPFESKLARPNA++RTGEP+   DLKDWT+DVL++ALTRAEE  RH+S
Sbjct: 121 VRPRTPFESKLARPNAKLRTGEPLRMGDLKDWTIDVLTDALTRAEECARHNS 171

[Close]

BLAST of CmoCh10G000190 vs. TrEMBL
Match: A0A067K1E6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18526 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 1.1e-54
Identity = 117/171 (68.42%), Postives = 144/171 (84.21%), Query Frame = 1


Query: 6   YGLR----VLRRQMHLLQQRECPSEALKVKIAELERFRKKKKSVK-QFIVDVPESKSFLD 65
           YG+R    + RR  H L  R+ P+E LK ++AEL++ RKKK   K +  V+VPESKSFLD
Sbjct: 2   YGVRETRLLCRRGFHTLS-RDGPTETLKRRVAELQKTRKKKNPKKHEVFVEVPESKSFLD 61

Query: 66  TASMPMILTAVGVALFAKLLMMYDESRSEELIERKIKNSPPGQGTVRMLSREEWEEMREV 125
           TA+MPMILT VG AL AKLLMM+D+S+S+E+IERKIKN+PPGQGTVRML+REEWEE+REV
Sbjct: 62  TATMPMILTVVGTALVAKLLMMHDDSKSQEMIERKIKNAPPGQGTVRMLTREEWEEIREV 121

Query: 126 RPRTPFESKLARPNARIRTGEPVHREDLKDWTVDVLSNALTRAEESVRHDS 172
           RPRTPFESKLARPNARIRTGE +H +DLKDWT+DVL++A+TR EESV+ +S
Sbjct: 122 RPRTPFESKLARPNARIRTGESLHLQDLKDWTIDVLTDAVTRVEESVKSNS 171

[Close]

BLAST of CmoCh10G000190 vs. TrEMBL
Match: A0A068V7J2_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00018400001 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 3.1e-54
Identity = 113/168 (67.26%), Postives = 137/168 (81.55%), Query Frame = 1


Query: 5   GYGLRVLRRQMHLLQQRECPSEALKVKIAELERFRKKKKSVK-QFIVDVPESKSFLDTAS 64
           G   +  +++ H L +   PSE LK +IAE+ER RK++   K Q  ++VPESKSFLDTA+
Sbjct: 6   GILFQTCKKKFHCLSRDAGPSEVLKKRIAEMERKRKRRDPRKNQLFIEVPESKSFLDTAT 65

Query: 65  MPMILTAVGVALFAKLLMMYDESRSEELIERKIKNSPPGQGTVRMLSREEWEEMREVRPR 124
           MPMILT  G ALFAKLLMM DES+S+E+IERKIKN+PPGQG+VRML+REEWEE+REVRPR
Sbjct: 66  MPMILTVAGTALFAKLLMMLDESKSQEMIERKIKNAPPGQGSVRMLTREEWEEVREVRPR 125

Query: 125 TPFESKLARPNARIRTGEPVHREDLKDWTVDVLSNALTRAEESVRHDS 172
            PFESKLARPNARIRTGEP+H ED+KDWT+DVL++  TRAEE VR  S
Sbjct: 126 MPFESKLARPNARIRTGEPLHWEDVKDWTIDVLTDGFTRAEECVRRRS 173

[Close]

BLAST of CmoCh10G000190 vs. TrEMBL
Match: A0A0D2Q0T7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G046300 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 4.0e-54
Identity = 106/161 (65.84%), Postives = 137/161 (85.09%), Query Frame = 1


Query: 10  VLRRQMHLLQQRECPSEALKVKIAELERFRKKKKSVK-QFIVDVPESKSFLDTASMPMIL 69
           + RR +H L + + PSE LK K+ E+E+ RK++   K Q  V+VPES+SFLDTA++PM L
Sbjct: 13  LFRRLLHTLSRDDGPSETLKKKVPEIEKTRKRRNPKKAQLFVEVPESRSFLDTATLPMYL 72

Query: 70  TAVGVALFAKLLMMYDESRSEELIERKIKNSPPGQGTVRMLSREEWEEMREVRPRTPFES 129
              G+ALFAKLLMM+DES+S+E+IERKIKN+PPGQGT+RML+REEWEE+REVRPRTPFES
Sbjct: 73  AVAGIALFAKLLMMHDESKSQEMIERKIKNAPPGQGTIRMLTREEWEEIREVRPRTPFES 132

Query: 130 KLARPNARIRTGEPVHREDLKDWTVDVLSNALTRAEESVRH 170
           KLARPNA+IRTGEP+H ED+K+WT+D+L++ALTRAE   +H
Sbjct: 133 KLARPNAKIRTGEPLHMEDMKNWTIDILTDALTRAENCSKH 173

[Close]

BLAST of CmoCh10G000190 vs. TAIR10
Match: AT2G04340.1 (AT2G04340.1 unknown protein)

HSP 1 Score: 213.4 bits (542), Expect = 1.1e-55
Identity = 106/164 (64.63%), Postives = 139/164 (84.76%), Query Frame = 1


Query: 10  VLRRQMHLLQQRECPSEALKVKIAELERFRKKKKSVK-QFIVDVPESKSFLDTASMPMIL 69
           +LRR+ H     + P+E L+ KIA+L++ +K++  +K QF+V+VPES+S+LDTA+MPM L
Sbjct: 11  LLRRRFHS-PSNDAPTETLRKKIADLQKSKKRRNPIKNQFLVEVPESRSYLDTATMPMFL 70

Query: 70  TAVGVALFAKLLMMYDESRSEELIERKIKNSPPGQGTVRMLSREEWEEMREVRPRTPFES 129
             VG+ALFAK+LMM D+S+S+E+IERKIKN+P GQGTVRM+ REEW+E REVRPRTPFES
Sbjct: 71  AVVGIALFAKVLMMIDDSKSQEMIERKIKNAPQGQGTVRMIDREEWDEFREVRPRTPFES 130

Query: 130 KLARPNARIRTGEPVHREDLKDWTVDVLSNALTRAEESVRHDST 173
           KLARPNA+IRTGEPV ++DLK+WT+DVL+NAL R EESVR  S+
Sbjct: 131 KLARPNAQIRTGEPVRKDDLKNWTIDVLTNALERTEESVRRGSS 173

[Close]

BLAST of CmoCh10G000190 vs. NCBI nr
Match: gi|659128795|ref|XP_008464374.1| (PREDICTED: uncharacterized protein LOC103502279 isoform X1 [Cucumis melo])

HSP 1 Score: 296.2 bits (757), Expect = 3.7e-77
Identity = 154/176 (87.50%), Postives = 166/176 (94.32%), Query Frame = 1


Query: 1   MTGFGYGLRVLRRQMHLLQQRECPSEALKVKIAELERFRKKKKSVK--QFIVDVPESKSF 60
           MTGFG+GLRV+ RQ+HLLQQRE PSE L+ KIAELE+FRK+KKS+K  QFIVDVPES SF
Sbjct: 1   MTGFGHGLRVIGRQVHLLQQREGPSEVLRGKIAELEKFRKRKKSMKKDQFIVDVPESNSF 60

Query: 61  LDTASMPMILTAVGVALFAKLLMMYDESRSEELIERKIKNSPPGQGTVRMLSREEWEEMR 120
           LDT SMPMILTAVG+ALFAKLLMMYDESRSEELIERKIKN+PPGQGTVRMLSREEWEE+R
Sbjct: 61  LDTPSMPMILTAVGIALFAKLLMMYDESRSEELIERKIKNAPPGQGTVRMLSREEWEEIR 120

Query: 121 EVRPRTPFESKLARPNARIRTGEPVHREDLKDWTVDVLSNALTRAEESVRHDSTSK 175
           EVRPRTPFESKLARPNARIRTGEP+H EDLKDWTVDV+SNALTRAEESVRH STSK
Sbjct: 121 EVRPRTPFESKLARPNARIRTGEPLHMEDLKDWTVDVVSNALTRAEESVRHGSTSK 176

[Close]

BLAST of CmoCh10G000190 vs. NCBI nr
Match: gi|449440500|ref|XP_004138022.1| (PREDICTED: uncharacterized protein LOC101207324 [Cucumis sativus])

HSP 1 Score: 292.4 bits (747), Expect = 5.4e-76
Identity = 153/176 (86.93%), Postives = 162/176 (92.05%), Query Frame = 1


Query: 1   MTGFGYGLRVLRRQMHLLQQRECPSEALKVKIAELERFRKKKKSVK--QFIVDVPESKSF 60
           MTGFG+GLRV+ RQMHLL QRE PSE LK KIAELE+FRK K+S K  QF VDVPES SF
Sbjct: 1   MTGFGHGLRVIGRQMHLLHQREGPSEVLKGKIAELEKFRKMKRSTKKDQFTVDVPESNSF 60

Query: 61  LDTASMPMILTAVGVALFAKLLMMYDESRSEELIERKIKNSPPGQGTVRMLSREEWEEMR 120
           LDT SMPMILTAVG+ALFAKLLMMYDESRSEELIERKIKN+PPGQGTVRMLSR+EWEE+R
Sbjct: 61  LDTPSMPMILTAVGIALFAKLLMMYDESRSEELIERKIKNAPPGQGTVRMLSRQEWEEIR 120

Query: 121 EVRPRTPFESKLARPNARIRTGEPVHREDLKDWTVDVLSNALTRAEESVRHDSTSK 175
           EVRPRTPFESKLARPNARIRTGEP+H EDLKDWTVDVLSNALTRAEESVRH STSK
Sbjct: 121 EVRPRTPFESKLARPNARIRTGEPLHMEDLKDWTVDVLSNALTRAEESVRHGSTSK 176

[Close]

BLAST of CmoCh10G000190 vs. NCBI nr
Match: gi|568830274|ref|XP_006469426.1| (PREDICTED: uncharacterized protein LOC102609354 [Citrus sinensis])

HSP 1 Score: 223.4 bits (568), Expect = 3.1e-55
Identity = 114/172 (66.28%), Postives = 144/172 (83.72%), Query Frame = 1


Query: 1   MTGFGYGLRVLRRQMHLLQQRECPSEALKVKIAELERFRKKKKSVKQFI-VDVPESKSFL 60
           M G G  L +++R++H L  R+ PSE+LK ++AELE+ RK+K   K  + V+VPESKSFL
Sbjct: 1   MFGVGQRLFLVQRRLHTLS-RDGPSESLKKRVAELEKTRKRKNVKKNDVFVEVPESKSFL 60

Query: 61  DTASMPMILTAVGVALFAKLLMMYDESRSEELIERKIKNSPPGQGTVRMLSREEWEEMRE 120
           DTAS+PM LT   +ALFAKLLMMYD+S+S+E+IE KIKN+PPGQGT+RML+REEWEE +E
Sbjct: 61  DTASLPMFLTVAAIALFAKLLMMYDDSKSQEMIEHKIKNAPPGQGTMRMLTREEWEEFQE 120

Query: 121 VRPRTPFESKLARPNARIRTGEPVHREDLKDWTVDVLSNALTRAEESVRHDS 172
           VRPRTPFESKLARPNA++RTGEP+   DLKDWT+DVL++ALTRAEE  RH+S
Sbjct: 121 VRPRTPFESKLARPNAKLRTGEPLRMGDLKDWTIDVLTDALTRAEECARHNS 171

[Close]

BLAST of CmoCh10G000190 vs. NCBI nr
Match: gi|567911033|ref|XP_006447830.1| (hypothetical protein CICLE_v10016955mg [Citrus clementina])

HSP 1 Score: 221.5 bits (563), Expect = 1.2e-54
Identity = 113/172 (65.70%), Postives = 143/172 (83.14%), Query Frame = 1


Query: 1   MTGFGYGLRVLRRQMHLLQQRECPSEALKVKIAELERFRKKKKSVKQFI-VDVPESKSFL 60
           M G G  L +++R++H L  R+ PSE+LK ++AELE+ RK+K   K  + V+VPESKSFL
Sbjct: 1   MFGVGQRLFLVQRRLHTLS-RDGPSESLKKRVAELEKTRKRKNVKKNDVFVEVPESKSFL 60

Query: 61  DTASMPMILTAVGVALFAKLLMMYDESRSEELIERKIKNSPPGQGTVRMLSREEWEEMRE 120
           DTAS+PM LT   +ALFAKLLMMYD+S+S+E+IE KIKN+PPGQGT+RML+ EEWEE +E
Sbjct: 61  DTASLPMFLTVAAIALFAKLLMMYDDSKSQEMIEHKIKNAPPGQGTMRMLTHEEWEEFQE 120

Query: 121 VRPRTPFESKLARPNARIRTGEPVHREDLKDWTVDVLSNALTRAEESVRHDS 172
           VRPRTPFESKLARPNA++RTGEP+   DLKDWT+DVL++ALTRAEE  RH+S
Sbjct: 121 VRPRTPFESKLARPNAKLRTGEPLRMGDLKDWTIDVLTDALTRAEECARHNS 171

[Close]

BLAST of CmoCh10G000190 vs. NCBI nr
Match: gi|643718858|gb|KDP29957.1| (hypothetical protein JCGZ_18526 [Jatropha curcas])

HSP 1 Score: 221.1 bits (562), Expect = 1.5e-54
Identity = 117/171 (68.42%), Postives = 144/171 (84.21%), Query Frame = 1


Query: 6   YGLR----VLRRQMHLLQQRECPSEALKVKIAELERFRKKKKSVK-QFIVDVPESKSFLD 65
           YG+R    + RR  H L  R+ P+E LK ++AEL++ RKKK   K +  V+VPESKSFLD
Sbjct: 2   YGVRETRLLCRRGFHTLS-RDGPTETLKRRVAELQKTRKKKNPKKHEVFVEVPESKSFLD 61

Query: 66  TASMPMILTAVGVALFAKLLMMYDESRSEELIERKIKNSPPGQGTVRMLSREEWEEMREV 125
           TA+MPMILT VG AL AKLLMM+D+S+S+E+IERKIKN+PPGQGTVRML+REEWEE+REV
Sbjct: 62  TATMPMILTVVGTALVAKLLMMHDDSKSQEMIERKIKNAPPGQGTVRMLTREEWEEIREV 121

Query: 126 RPRTPFESKLARPNARIRTGEPVHREDLKDWTVDVLSNALTRAEESVRHDS 172
           RPRTPFESKLARPNARIRTGE +H +DLKDWT+DVL++A+TR EESV+ +S
Sbjct: 122 RPRTPFESKLARPNARIRTGESLHLQDLKDWTIDVLTDAVTRVEESVKSNS 171

The following BLAST results are available for this feature:

BLAST of CmoCh10G000190 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh10G000190 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LR33_CUCSA	3.8e-76	86.93	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G000630 PE=4 SV=1	[more]
V4UA82_9ROSI	8.1e-55	65.70	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016955mg PE=4 SV=1	[more]
A0A067K1E6_JATCU	1.1e-54	68.42	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18526 PE=4 SV=1	[more]
A0A068V7J2_COFCA	3.1e-54	67.26	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00018400001 PE=4 SV=1	[more]
A0A0D2Q0T7_GOSRA	4.0e-54	65.84	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G046300 PE=4 SV=1	[more]

BLAST of CmoCh10G000190 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G04340.1	1.1e-55	64.63	unknown protein	[more]

BLAST of CmoCh10G000190 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659128795\|ref\|XP_008464374.1\|	3.7e-77	87.50	PREDICTED: uncharacterized protein LOC103502279 isoform X1 [Cucumis melo]	[more]
gi\|449440500\|ref\|XP_004138022.1\|	5.4e-76	86.93	PREDICTED: uncharacterized protein LOC101207324 [Cucumis sativus]	[more]
gi\|568830274\|ref\|XP_006469426.1\|	3.1e-55	66.28	PREDICTED: uncharacterized protein LOC102609354 [Citrus sinensis]	[more]
gi\|567911033\|ref\|XP_006447830.1\|	1.2e-54	65.70	hypothetical protein CICLE_v10016955mg [Citrus clementina]	[more]
gi\|643718858\|gb\|KDP29957.1\|	1.5e-54	68.42	hypothetical protein JCGZ_18526 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005506	iron ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh10G000190.1	CmoCh10G000190.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36008	FAMILY NOT NAMED	coord: 1..172 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh10G000190	CmaCh10G000230	Cucurbita maxima (Rimu)	cmacmoB067
CmoCh10G000190	Cla019317	Watermelon (97103) v1	cmowmB064
CmoCh10G000190	Csa1G000630	Cucumber (Chinese Long) v2	cmocuB037
CmoCh10G000190	MELO3C026167	Melon (DHL92) v3.5.1	cmomeB057
CmoCh10G000190	ClCG06G018310	Watermelon (Charleston Gray)	cmowcgB065
CmoCh10G000190	CSPI01G00130	Wild cucumber (PI 183967)	cmocpiB040
CmoCh10G000190	Lsi06G016780	Bottle gourd (USVL1VR-Ls)	cmolsiB058
CmoCh10G000190	MELO3C026167.2	Melon (DHL92) v3.6.1	cmomedB060
CmoCh10G000190	CsaV3_1G000130	Cucumber (Chinese Long) v3	cmocucB0044
CmoCh10G000190	Cla97C06G128070	Watermelon (97103) v2	cmowmbB071
CmoCh10G000190	Bhi02G000473	Wax gourd	cmowgoB0075
CmoCh10G000190	CsGy1G000100	Cucumber (Gy14) v2	cgybcmoB005
CmoCh10G000190	Carg10247	Silver-seed gourd	carcmoB0493

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh10G000190	Cucurbita pepo (Zucchini)	cmocpeB055
CmoCh10G000190	Cucurbita pepo (Zucchini)	cmocpeB070
CmoCh10G000190	Cucumber (Gy14) v2	cgybcmoB262
CmoCh10G000190	Silver-seed gourd	carcmoB0829
CmoCh10G000190	Cucumber (Chinese Long) v3	cmocucB0074
CmoCh10G000190	Cucurbita moschata (Rifu)	cmocmoB039
CmoCh10G000190	Cucumber (Gy14) v1	cgycmoB0432
CmoCh10G000190	Cucurbita maxima (Rimu)	cmacmoB100