Lsi06G011430 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G011430
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr06 : 21691259 .. 21694034 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAAACTCTGAATGAATGATGAGAATCTTTGTTTTAGTTTTGGCATGTCCTCCAAAGCCCCACAGGCAGTTTTTATGGTTATGAACGAATTGTATAAATTTGGACCAAAAAATTTCAAACCCTTCTAATATTAGCCTCTTCCTTTTTATGTTTCTCCTTTCTTCTTCCTTCAATGGATCCCCCATTCCCACAGAGCATCCCCATCCCCATCCTCATCCCCATCTCTATCCCCTGCAACTAAACCACAATCTTATCATATCACATCCATGGCCGATCTTAAACCTCTCCAAATTCTACTGCTAATGGCGCCTCTTCTTCTTGCCTCTCAACTCGATTCCGTTTTCGCTCACACAGATACAGCCACTCCCAATCTTCCCCAAGAAACAACCAATGGAGGACCTCTCTCTTCCTCAGATCCTCATCTTCCTCCGCCTCGCAACAACCAAACAGCCGACCAAAACCGTAGGAAAAAAATTATCGAAGAACTTGTCGCTAAACTCTCTCCAAAACGCTTCAGATCTCATCGCGTTTCAATTAGGAAACGCCGAAAACGCCAACGCCAACGACGCGCTTGGCGACACGCTTCCAGTCATTCCTCCCAAGGTTATATTCTGATGGTTTCTTTGCCGAACATTTGCTTCGCGATTCTTTCGTTGATCCTGCATAATCTGGTTTCTGTTAATTCACTTTGAAGATGAAAATGAAGATGAAACCTAGCGGTAATATTTTTCCTTTAGCATTGTCTGCAAAGCCTTTTGTTGATTCAGTTTTGAGATGAGAGGATGGGGATCTGTTTGGTTTGGTCATGAATTTTGTTCTTCAATTTTTTTTATTTTATTTTTTTTTTTTGTTAAAGGGAAAAATCATAATAAAGGGTGAATTTTAGGGGAAGGCTCCTTCATATTTTTGTTATCTCAAGGTTTCTTTAGCAGAGGGAAAAAAGAAATGGAATAGAATTTGGGCAACAGGAGGAGAGGAATTATATTCTTTGTCTTCTAAAGTGAATGATCTGATTTTACAAAAGAAGATTTTCCATCTCTTCTGCTTCAATTCAATACCCTTTTTTCCTTCTCCACTCTTCCTCTTCAAGAACCTCATCTCTTTGGAATCATATTAAAAGCACACTTTTCTATTTCCTGTTCATACTTCAGTTTCAACAGGATTGAACTATCGATCTTTGAAATGAAAACCTGACAATTTATTGTTCAGTTCTTTCAAAATAATATAGAATAATAAAATTTCAACAGGCACTTTCTGTCATGGATTTCTCAATCCATCTTCATTTTCTCTCCACATAAGTTTCCTTTAGGTTCTGTCTACACACATTGTTTGTTTTACATCAATATTATGTGATGTTCTTTTCTTAATAGTTAATACATCAAAAGTCAATAGCTAGATATCTTTTTAAAATAAAAATATGCACTACGATTAACATAATGATATCTAATTCTTGGTGATGAGATAAGTTTTTTATTTTACAAGAAATTAGACAAATGCTATATTCTAGGAATATCATGTCAGTTATACTATATTCCAAGAATTTAAGAATAATGCAATCCCTAAAACGAATAATCTATTCAAATTATATTCTAACTTAATTGGTATACTTAGATTAAAAATTCTAAATGATCATATATGACTCGTTTACAAGTATCTTTACATTTATCATAATTTGGAGGAAGAAAAATAGAAGAAATTACAAAAGGGAGTCCATTTTAAGCCACAAATTCACTTTAGCTAAGAAGTAAGTTTTAAATTCTTTTCTGAATTAAATAACATGATTTATGAGTATATATTCCAATTCATATATGTCTCTATAACCTATACACTTTATAGGGGGTACTGTTGTTTCTTTTTAGTGGTTTAAAAACAGGCAGTCTCAACCCTCCATTTACTCATACAAGATTGAATTTGAAGATCAAAATCAACGCAAATGACGAAAGGACTAGTCATTTTGCTCCTCTTCTCCCTTATTTCCCTATATCTCCTTCCATTTTGCCTATCTGAAACCAATTTCATCACCAAAGCTGATGATCACTACAAGCAACTGAAGCAGGGGAGGCCTAGAAAAGGTAACAAATCTAACAATCTTTTGAATTTTGCACTTGAAGAACAGTGTGTGAGAAGCACTATTTTTTAAGGCTCAAGCCGCAATAAAGTGCAATAGTTTTCTGGGGTTTAGGTGCAATGCGCAAAAAAATGCGCAAGTTTTTTTTTTTTTTTTTTTTTTAGGCACACTATATATAAAAGTACTACTTAAAGAAGAGAAAGCAAATATGGAGAGAAAGAAAAAGACCCCTAAACGCAAGAAATTTTGCATTTAGGCTTAATAAATTTGATTTTTTAGTTAATAAAGAAGCAAAAACCGCAATTATTACTATTTTTAAAAATAATAACAAAGCCCCAAGGTGCATGGCTTTGAGCCTTGGGGCTTCACAAAAGGTGTGCGTCTTATTTTGTGAGTCTTGCCTTTTCAAGGTGAGGCGCCAGACTTGGGCCTTGAGTCTAAGCATGTGCCTGGCAGGGCTTTTTAAAATACTGGTGAAAAGTGCTTTCTTGTGTTGCTGGATCTGCAGATTTACAGGGCAGTGAACAAATAAATGGTGGAGCTGCGATGGTGACCGTTAAGAGAGCAAAAGCAGTTTATGGCGGTGCGAACGACATTCATCATGGGCACTCGAAGAATGATGCTAACCGTTTACAGATCAAATCAACTTCTTCGTTGCTGTGGAAAGTTTCATTTGGTTTCTTTGGTTTCTGTCTTCTTCTT

mRNA sequence

AAAAAAAAAAACTCTGAATGAATGATGAGAATCTTTGTTTTAGTTTTGGCATGTCCTCCAAAGCCCCACAGGCAGTTTTTATGGTTATGAACGAATTGTATAAATTTGGACCAAAAAATTTCAAACCCTTCTAATATTAGCCTCTTCCTTTTTATGTTTCTCCTTTCTTCTTCCTTCAATGGATCCCCCATTCCCACAGAGCATCCCCATCCCCATCCTCATCCCCATCTCTATCCCCTGCAACTAAACCACAATCTTATCATATCACATCCATGGCCGATCTTAAACCTCTCCAAATTCTACTGCTAATGGCGCCTCTTCTTCTTGCCTCTCAACTCGATTCCGTTTTCGCTCACACAGATACAGCCACTCCCAATCTTCCCCAAGAAACAACCAATGGAGGACCTCTCTCTTCCTCAGATCCTCATCTTCCTCCGCCTCGCAACAACCAAACAGCCGACCAAAACCGTAGGAAAAAAATTATCGAAGAACTTGTCGCTAAACTCTCTCCAAAACGCTTCAGATCTCATCGCGTTTCAATTAGGAAACGCCGAAAACGCCAACGCCAACGACGCGCTTGGCGACACGCTTCCAGTCATTCCTCCCAAGGTTATATTCTGATGGTTTCTTTGCCGAACATTTGCTTCGCGATTCTTTCGTTGATCCTGCATAATCTGGTTTCTGTTAATTCACTTTGAAGATGAAAATGAAGATGAAACCTAGCGGTAATATTTTTCCTTTAGCATTGTCTGCAAAGCCTTTTGTTGATTCAGTTTTGAGATGAGAGGATGGGGATCTGTTTGGTTTGGTCATGAATTTTGTTCTTCAATTTTTTTTATTTTATTTTTTTTTTTTGTTAAAGGGAAAAATCATAATAAAGGGTGAATTTTAGGGGAAGGCTCCTTCATATTTTTGTTATCTCAAGGTTTCTTTAGCAGAGGGAAAAAAGAAATGGAATAGAATTTGGGCAACAGGAGGAGAGGAATTATATTCTTTGTCTTCTAAAGTGAATGATCTGATTTTACAAAAGAAGATTTTCCATCTCTTCTGCTTCAATTCAATACCCTTTTTTCCTTCTCCACTCTTCCTCTTCAAGAACCTCATCTCTTTGGAATCATATTAAAAGCACACTTTTCTATTTCCTGTTCATACTTCAGTTTCAACAGGATTGAACTATCGATCTTTGAAATGAAAACCTGACAATTTATTGTTCAGTTCTTTCAAAATAATATAGAATAATAAAATTTCAACAGGCACTTTCTGTCATGGATTTCTCAATCCATCTTCATTTTCTCTCCACATAAGTTTCCTTTAGGTTCTGTCTACACACATTGTTTGTTTTACATCAATATTATGTGATGTTCTTTTCTTAATAGTTAATACATCAAAAGTCAATAGCTAGATATCTTTTTAAAATAAAAATATGCACTACGATTAACATAATGATATCTAATTCTTGGTGATGAGATAAGTTTTTTATTTTACAAGAAATTAGACAAATGCTATATTCTAGGAATATCATGTCAGTTATACTATATTCCAAGAATTTAAGAATAATGCAATCCCTAAAACGAATAATCTATTCAAATTATATTCTAACTTAATTGGTATACTTAGATTAAAAATTCTAAATGATCATATATGACTCGTTTACAAGTATCTTTACATTTATCATAATTTGGAGGAAGAAAAATAGAAGAAATTACAAAAGGGAGTCCATTTTAAGCCACAAATTCACTTTAGCTAAGAAGTAAGTTTTAAATTCTTTTCTGAATTAAATAACATGATTTATGAGTATATATTCCAATTCATATATGTCTCTATAACCTATACACTTTATAGGGGGTACTGTTGTTTCTTTTTAGTGGTTTAAAAACAGGCAGTCTCAACCCTCCATTTACTCATACAAGATTGAATTTGAAGATCAAAATCAACGCAAATGACGAAAGGACTAGTCATTTTGCTCCTCTTCTCCCTTATTTCCCTATATCTCCTTCCATTTTGCCTATCTGAAACCAATTTCATCACCAAAGCTGATGATCACTACAAGCAACTGAAGCAGGGGAGGCCTAGAAAAGTTTATGGCGGTGCGAACGACATTCATCATGGGCACTCGAAGAATGATGCTAACCGTTTACAGATCAAATCAACTTCTTCGTTGCTGTGGAAAGTTTCATTTGGTTTCTTTGGTTTCTGTCTTCTTCTT

Coding sequence (CDS)

ATGACGAAAGGACTAGTCATTTTGCTCCTCTTCTCCCTTATTTCCCTATATCTCCTTCCATTTTGCCTATCTGAAACCAATTTCATCACCAAAGCTGATGATCACTACAAGCAACTGAAGCAGGGGAGGCCTAGAAAAGTTTATGGCGGTGCGAACGACATTCATCATGGGCACTCGAAGAATGATGCTAACCGTTTACAGATCAAATCAACTTCTTCGTTGCTGTGGAAAGTTTCATTTGGTTTCTTTGGTTTCTGTCTTCTTCTT

Protein sequence

MTKGLVILLLFSLISLYLLPFCLSETNFITKADDHYKQLKQGRPRKVYGGANDIHHGHSKNDANRLQIKSTSSLLWKVSFGFFGFCLLL

Homology

[Close]

BLAST of Lsi06G011430 vs. TrEMBL
Match: A0A0A0LW17_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G257310 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 2.3e-29
Identity = 72/111 (64.86%), Postives = 79/111 (71.17%), Query Frame = 1


Query: 1   MTKGLVILLLFSLISLYLLPFCLSETNFITKADDHYKQLKQGRPRK-------------- 60
           M KGL++L LFS+I LYLLPFCL ETNF TKADDH KQLKQGRPRK              
Sbjct: 1   MKKGLLLLFLFSIIFLYLLPFCLCETNFTTKADDHNKQLKQGRPRKDVQSSEELHGGASV 60

Query: 61  --------VYGGANDIHHGHSKNDANRLQIKSTSSLLWKVSFGFFGFCLLL 90
                   VYGGANDIHHGHSKNDAN L IKS SSL+WKVSFGF GFC+++
Sbjct: 61  ATVMRAKAVYGGANDIHHGHSKNDANSLWIKSISSLVWKVSFGFLGFCVVV 111

[Close]

BLAST of Lsi06G011430 vs. NCBI nr
Match: gi|449457873|ref|XP_004146672.1| (PREDICTED: uncharacterized protein LOC101207763 [Cucumis sativus])

HSP 1 Score: 136.0 bits (341), Expect = 3.3e-29
Identity = 72/111 (64.86%), Postives = 79/111 (71.17%), Query Frame = 1


Query: 1   MTKGLVILLLFSLISLYLLPFCLSETNFITKADDHYKQLKQGRPRK-------------- 60
           M KGL++L LFS+I LYLLPFCL ETNF TKADDH KQLKQGRPRK              
Sbjct: 1   MKKGLLLLFLFSIIFLYLLPFCLCETNFTTKADDHNKQLKQGRPRKDVQSSEELHGGASV 60

Query: 61  --------VYGGANDIHHGHSKNDANRLQIKSTSSLLWKVSFGFFGFCLLL 90
                   VYGGANDIHHGHSKNDAN L IKS SSL+WKVSFGF GFC+++
Sbjct: 61  ATVMRAKAVYGGANDIHHGHSKNDANSLWIKSISSLVWKVSFGFLGFCVVV 111

The following BLAST results are available for this feature:

BLAST of Lsi06G011430 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi06G011430 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LW17_CUCSA	2.3e-29	64.86	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G257310 PE=4 SV=1	[more]

BLAST of Lsi06G011430 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi06G011430 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449457873\|ref\|XP_004146672.1\|	3.3e-29	64.86	PREDICTED: uncharacterized protein LOC101207763 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G011430.1	Lsi06G011430.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi06G011430	Csa1G257310	Cucumber (Chinese Long) v2	culsiB076
Lsi06G011430	CSPI01G17830	Wild cucumber (PI 183967)	cpilsiB075
Lsi06G011430	CmaCh10G004610	Cucurbita maxima (Rimu)	cmalsiB066
Lsi06G011430	CmoCh10G004950	Cucurbita moschata (Rifu)	cmolsiB053
Lsi06G011430	Cla018744	Watermelon (97103) v1	lsiwmB421
Lsi06G011430	MELO3C010210	Melon (DHL92) v3.5.1	lsimeB402
Lsi06G011430	ClCG06G012510	Watermelon (Charleston Gray)	lsiwcgB379
Lsi06G011430	MELO3C010210.2	Melon (DHL92) v3.6.1	lsimedB423
Lsi06G011430	Cla97C06G121740	Watermelon (97103) v2	lsiwmbB380
Lsi06G011430	Bhi02G000672	Wax gourd	lsiwgoB503
Lsi06G011430	Cp4.1LG18g05870	Cucurbita pepo (Zucchini)	cpelsiB307
Lsi06G011430	Carg10002	Silver-seed gourd	carlsiB117
Lsi06G011430	CsaV3_1G029090	Cucumber (Chinese Long) v3	cuclsiB085

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G011430	Melon (DHL92) v3.5.1	lsimeB424
Lsi06G011430	Watermelon (Charleston Gray)	lsiwcgB370
Lsi06G011430	Watermelon (97103) v1	lsiwmB404
Lsi06G011430	Cucumber (Gy14) v2	cgyblsiB071
Lsi06G011430	Melon (DHL92) v3.6.1	lsimedB444
Lsi06G011430	Silver-seed gourd	carlsiB461
Lsi06G011430	Cucumber (Chinese Long) v3	cuclsiB146
Lsi06G011430	Cucumber (Chinese Long) v3	cuclsiB321
Lsi06G011430	Watermelon (97103) v2	lsiwmbB372
Lsi06G011430	Wax gourd	lsiwgoB500
Lsi06G011430	Bottle gourd (USVL1VR-Ls)	lsilsiB061
Lsi06G011430	Cucumber (Gy14) v1	cgylsiB440
Lsi06G011430	Cucurbita maxima (Rimu)	cmalsiB131
Lsi06G011430	Cucurbita maxima (Rimu)	cmalsiB447
Lsi06G011430	Cucurbita moschata (Rifu)	cmolsiB121
Lsi06G011430	Cucurbita pepo (Zucchini)	cpelsiB567
Lsi06G011430	Wild cucumber (PI 183967)	cpilsiB301
Lsi06G011430	Cucumber (Chinese Long) v2	culsiB301