Csa1G257310 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G257310
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 12587318 .. 12588195 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAAGGGCTATTACTTTTGTTCCTCTTCTCCATTATTTTCCTCTATCTTCTTCCATTTTGCCTATGCGAAACCAATTTCACCACCAAAGCTGATGATCATAACAAGCAGCTGAAGCAGGGGAGGCCCAGAAAAGGTAACAAATCTATCTTTTGAATTTTTCACTTGAAGACCGGAAAGTGGTTTGGGGCATGTGTTTGCTTTATCTTTCATGTTACAAGAGCTCACTCCATATTTAGGGTTACTATTTTAAATCATCTTTTACTACAATATTTACTAGGGTAATTATAATTGATAGCCATTTGAGGAATAATAATTAAAAATATAGCAACATTAGAAAAAAATTGCAAATATAGCAAAATTATGACTGATAGACTTGTATCACTCATAGACTCGTATGATCTATCGGTGATAGACCAATATTTACAACAAAAAATCCATACTACTGTCTACTCATCCTCTCACTCTTTGGCACATTGTTTGTCATTTTCTATTTTCTATCTGGTATATATCCTGCCCAACATAGCATGCATTCCAAATACATACTATAATAATAACTCAATGTCCCAAGCATCTTAAATGTTTATTAGAAAAAACTGTTTAAATAAGAAATAGCTTTTTGAAAAACAAATTTTCCCTAATCAATCCAAAGTGTTGTTGGATCCACAGATGTACAGAGCAGTGAAGAATTACATGGTGGAGCTTCAGTGGCGACAGTTATGAGAGCAAAAGCAGTTTACGGTGGTGCGAACGACATTCATCACGGACACTCGAAGAATGATGCTAACTCTTTATGGATCAAATCAATTTCTTCGTTGGTGTGGAAAGTTTCATTTGGATTCCTTGGTTTCTGTGTTGTTGTTAAAGGTTTTTAA

mRNA sequence

ATGAAGAAAGGGCTATTACTTTTGTTCCTCTTCTCCATTATTTTCCTCTATCTTCTTCCATTTTGCCTATGCGAAACCAATTTCACCACCAAAGCTGATGATCATAACAAGCAGCTGAAGCAGGGGAGGCCCAGAAAAGATGTACAGAGCAGTGAAGAATTACATGGTGGAGCTTCAGTGGCGACAGTTATGAGAGCAAAAGCAGTTTACGGTGGTGCGAACGACATTCATCACGGACACTCGAAGAATGATGCTAACTCTTTATGGATCAAATCAATTTCTTCGTTGGTGTGGAAAGTTTCATTTGGATTCCTTGGTTTCTGTGTTGTTGTTAAAGGTTTTTAA

Coding sequence (CDS)

ATGAAGAAAGGGCTATTACTTTTGTTCCTCTTCTCCATTATTTTCCTCTATCTTCTTCCATTTTGCCTATGCGAAACCAATTTCACCACCAAAGCTGATGATCATAACAAGCAGCTGAAGCAGGGGAGGCCCAGAAAAGATGTACAGAGCAGTGAAGAATTACATGGTGGAGCTTCAGTGGCGACAGTTATGAGAGCAAAAGCAGTTTACGGTGGTGCGAACGACATTCATCACGGACACTCGAAGAATGATGCTAACTCTTTATGGATCAAATCAATTTCTTCGTTGGTGTGGAAAGTTTCATTTGGATTCCTTGGTTTCTGTGTTGTTGTTAAAGGTTTTTAA

Protein sequence

MKKGLLLLFLFSIIFLYLLPFCLCETNFTTKADDHNKQLKQGRPRKDVQSSEELHGGASVATVMRAKAVYGGANDIHHGHSKNDANSLWIKSISSLVWKVSFGFLGFCVVVKGF*

Homology

[Close]

BLAST of Csa1G257310 vs. TrEMBL
Match: A0A0A0LW17_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G257310 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 2.1e-59
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1


Query: 1   MKKGLLLLFLFSIIFLYLLPFCLCETNFTTKADDHNKQLKQGRPRKDVQSSEELHGGASV 60
           MKKGLLLLFLFSIIFLYLLPFCLCETNFTTKADDHNKQLKQGRPRKDVQSSEELHGGASV
Sbjct: 1   MKKGLLLLFLFSIIFLYLLPFCLCETNFTTKADDHNKQLKQGRPRKDVQSSEELHGGASV 60

Query: 61  ATVMRAKAVYGGANDIHHGHSKNDANSLWIKSISSLVWKVSFGFLGFCVVVKGF 115
           ATVMRAKAVYGGANDIHHGHSKNDANSLWIKSISSLVWKVSFGFLGFCVVVKGF
Sbjct: 61  ATVMRAKAVYGGANDIHHGHSKNDANSLWIKSISSLVWKVSFGFLGFCVVVKGF 114

[Close]

BLAST of Csa1G257310 vs. NCBI nr
Match: gi|449457873|ref|XP_004146672.1| (PREDICTED: uncharacterized protein LOC101207763 [Cucumis sativus])

HSP 1 Score: 236.1 bits (601), Expect = 3.0e-59
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1


Query: 1   MKKGLLLLFLFSIIFLYLLPFCLCETNFTTKADDHNKQLKQGRPRKDVQSSEELHGGASV 60
           MKKGLLLLFLFSIIFLYLLPFCLCETNFTTKADDHNKQLKQGRPRKDVQSSEELHGGASV
Sbjct: 1   MKKGLLLLFLFSIIFLYLLPFCLCETNFTTKADDHNKQLKQGRPRKDVQSSEELHGGASV 60

Query: 61  ATVMRAKAVYGGANDIHHGHSKNDANSLWIKSISSLVWKVSFGFLGFCVVVKGF 115
           ATVMRAKAVYGGANDIHHGHSKNDANSLWIKSISSLVWKVSFGFLGFCVVVKGF
Sbjct: 61  ATVMRAKAVYGGANDIHHGHSKNDANSLWIKSISSLVWKVSFGFLGFCVVVKGF 114

The following BLAST results are available for this feature:

BLAST of Csa1G257310 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LW17_CUCSA	2.1e-59	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G257310 PE=4 SV=1	[more]

BLAST of Csa1G257310 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449457873\|ref\|XP_004146672.1\|	3.0e-59	100.00	PREDICTED: uncharacterized protein LOC101207763 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU098590	cucumber EST collection version 3.0	transcribed_cluster
CU099783	cucumber EST collection version 3.0	transcribed_cluster
CU100829	cucumber EST collection version 3.0	transcribed_cluster
CU138599	cucumber EST collection version 3.0	transcribed_cluster
CU162368	cucumber EST collection version 3.0	transcribed_cluster
CU172954	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G257310.1	Csa1G257310.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU100829	CU100829	transcribed_cluster
CU172954	CU172954	transcribed_cluster
CU099783	CU099783	transcribed_cluster
CU138599	CU138599	transcribed_cluster
CU098590	CU098590	transcribed_cluster
CU162368	CU162368	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G257310	Cla018744	Watermelon (97103) v1	cuwmB085
Csa1G257310	MELO3C010210	Melon (DHL92) v3.5.1	cumeB060
Csa1G257310	ClCG06G012510	Watermelon (Charleston Gray)	cuwcgB072
Csa1G257310	Lsi06G011430	Bottle gourd (USVL1VR-Ls)	culsiB076
Csa1G257310	MELO3C010210.2	Melon (DHL92) v3.6.1	cumedB053
Csa1G257310	Cla97C06G121740	Watermelon (97103) v2	cuwmbB071
Csa1G257310	Bhi02G000672	Wax gourd	cuwgoB103
Csa1G257310	CSPI01G17830	Wild cucumber (PI 183967)	cpicuB004
Csa1G257310	CmaCh10G004610	Cucurbita maxima (Rimu)	cmacuB067
Csa1G257310	CmoCh10G004950	Cucurbita moschata (Rifu)	cmocuB056
Csa1G257310	Cp4.1LG18g05870	Cucurbita pepo (Zucchini)	cpecuB356
Csa1G257310	Carg10002	Silver-seed gourd	carcuB0136

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G257310	Cucumber (Chinese Long) v2	cucuB009
Csa1G257310	Cucumber (Gy14) v1	cgycuB095
Csa1G257310	Cucumber (Gy14) v1	cgycuB260
Csa1G257310	Cucurbita maxima (Rimu)	cmacuB102
Csa1G257310	Cucurbita moschata (Rifu)	cmocuB091
Csa1G257310	Cucurbita pepo (Zucchini)	cpecuB641
Csa1G257310	Bottle gourd (USVL1VR-Ls)	culsiB011
Csa1G257310	Bottle gourd (USVL1VR-Ls)	culsiB066
Csa1G257310	Cucumber (Gy14) v2	cgybcuB006
Csa1G257310	Cucumber (Gy14) v2	cgybcuB008
Csa1G257310	Silver-seed gourd	carcuB0532