Lsi06G008860 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G008860
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Chromosome 3B, genomic scaffold, cultivar Chinese Spring
Location	chr06 : 18425601 .. 18425801 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAGAAGAGTGTGAAACGACGACGTTTTATTCTTCAGGCCCCAAGTTGATTCCTTACGATGCTTTCTCTTATTCTCAGAATTTCGATCAAGGCACCGCCGGTGAAGAACTTGATAATCTTTCCCGATCCTTCTCCGCCCGCTTCGCTCTCGCCAATGTTGCTTCCACAATCTTTCTTCACAAACAACATCTTCAATAA

mRNA sequence

ATGTTAGAAGAGTGTGAAACGACGACGTTTTATTCTTCAGGCCCCAAGTTGATTCCTTACGATGCTTTCTCTTATTCTCAGAATTTCGATCAAGGCACCGCCGGTGAAGAACTTGATAATCTTTCCCGATCCTTCTCCGCCCGCTTCGCTCTCGCCAATGTTGCTTCCACAATCTTTCTTCACAAACAACATCTTCAATAA

Coding sequence (CDS)

ATGTTAGAAGAGTGTGAAACGACGACGTTTTATTCTTCAGGCCCCAAGTTGATTCCTTACGATGCTTTCTCTTATTCTCAGAATTTCGATCAAGGCACCGCCGGTGAAGAACTTGATAATCTTTCCCGATCCTTCTCCGCCCGCTTCGCTCTCGCCAATGTTGCTTCCACAATCTTTCTTCACAAACAACATCTTCAATAA

Protein sequence

MLEECETTTFYSSGPKLIPYDAFSYSQNFDQGTAGEELDNLSRSFSARFALANVASTIFLHKQHLQ

Homology

[Close]

BLAST of Lsi06G008860 vs. TrEMBL
Match: A0A0A0LWX3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G370510 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.1e-23
Identity = 57/65 (87.69%), Postives = 59/65 (90.77%), Query Frame = 1


Query: 1   MLEECETTTFYSSGPKLIPYDAFSYSQNFDQGTAGEELDNLSRSFSARFALANVASTIFL 60
           +LE   TTTFYSSGPKLIPYD FSYSQNFDQGTAGEELDNLSRSFSARFALA+VAS  FL
Sbjct: 42  ILESSNTTTFYSSGPKLIPYDPFSYSQNFDQGTAGEELDNLSRSFSARFALADVASATFL 101

Query: 61  HKQHL 66
           HKQHL
Sbjct: 102 HKQHL 106

[Close]

BLAST of Lsi06G008860 vs. TrEMBL
Match: A0A151S3I6_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_028966 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.2e-06
Identity = 28/41 (68.29%), Postives = 32/41 (78.05%), Query Frame = 1


Query: 10 FYSSGPKLIPYDAFSYSQNFDQGTAGEELDNLSRSFSARFA 51
          F S+ P  +PYD +SYSQNFDQGTA +E DNLSRSF  RFA
Sbjct: 50 FESASPLQVPYDPYSYSQNFDQGTAKDEPDNLSRSFCVRFA 90

[Close]

BLAST of Lsi06G008860 vs. TrEMBL
Match: A0A0B2QHG5_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_019007 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.5e-06
Identity = 26/39 (66.67%), Postives = 31/39 (79.49%), Query Frame = 1


Query: 12 SSGPKLIPYDAFSYSQNFDQGTAGEELDNLSRSFSARFA 51
          +S P  +PYD ++YSQNFDQGTA +E DN SRSFS RFA
Sbjct: 41 ASSPLQVPYDPYTYSQNFDQGTAKDEPDNFSRSFSVRFA 79

[Close]

BLAST of Lsi06G008860 vs. TrEMBL
Match: I1KIS1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_07G087300 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.5e-06
Identity = 26/39 (66.67%), Postives = 31/39 (79.49%), Query Frame = 1


Query: 12 SSGPKLIPYDAFSYSQNFDQGTAGEELDNLSRSFSARFA 51
          +S P  +PYD ++YSQNFDQGTA +E DN SRSFS RFA
Sbjct: 55 ASSPLQVPYDPYTYSQNFDQGTAKDEPDNFSRSFSVRFA 93

[Close]

BLAST of Lsi06G008860 vs. NCBI nr
Match: gi|700210261|gb|KGN65357.1| (hypothetical protein Csa_1G370510 [Cucumis sativus])

HSP 1 Score: 116.7 bits (291), Expect = 1.5e-23
Identity = 57/65 (87.69%), Postives = 59/65 (90.77%), Query Frame = 1


Query: 1   MLEECETTTFYSSGPKLIPYDAFSYSQNFDQGTAGEELDNLSRSFSARFALANVASTIFL 60
           +LE   TTTFYSSGPKLIPYD FSYSQNFDQGTAGEELDNLSRSFSARFALA+VAS  FL
Sbjct: 42  ILESSNTTTFYSSGPKLIPYDPFSYSQNFDQGTAGEELDNLSRSFSARFALADVASATFL 101

Query: 61  HKQHL 66
           HKQHL
Sbjct: 102 HKQHL 106

[Close]

BLAST of Lsi06G008860 vs. NCBI nr
Match: gi|719980368|ref|XP_010249774.1| (PREDICTED: uncharacterized protein LOC104592237 [Nelumbo nucifera])

HSP 1 Score: 67.4 bits (163), Expect = 1.1e-08
Identity = 32/41 (78.05%), Postives = 35/41 (85.37%), Query Frame = 1


Query: 10  FYSSGPKLIPYDAFSYSQNFDQGTAGEELDNLSRSFSARFA 51
           FYSS P  +PYDA+SYSQNFDQG+A  E DNLSRSFSARFA
Sbjct: 70  FYSSSPLQVPYDAYSYSQNFDQGSAWTEPDNLSRSFSARFA 110

[Close]

BLAST of Lsi06G008860 vs. NCBI nr
Match: gi|1012338067|gb|KYP49328.1| (hypothetical protein KK1_028966 [Cajanus cajan])

HSP 1 Score: 60.1 bits (144), Expect = 1.7e-06
Identity = 28/41 (68.29%), Postives = 32/41 (78.05%), Query Frame = 1


Query: 10 FYSSGPKLIPYDAFSYSQNFDQGTAGEELDNLSRSFSARFA 51
          F S+ P  +PYD +SYSQNFDQGTA +E DNLSRSF  RFA
Sbjct: 50 FESASPLQVPYDPYSYSQNFDQGTAKDEPDNLSRSFCVRFA 90

[Close]

BLAST of Lsi06G008860 vs. NCBI nr
Match: gi|571468246|ref|XP_006584187.1| (PREDICTED: uncharacterized protein LOC102669499 [Glycine max])

HSP 1 Score: 58.2 bits (139), Expect = 6.5e-06
Identity = 26/39 (66.67%), Postives = 31/39 (79.49%), Query Frame = 1


Query: 12 SSGPKLIPYDAFSYSQNFDQGTAGEELDNLSRSFSARFA 51
          +S P  +PYD ++YSQNFDQGTA +E DN SRSFS RFA
Sbjct: 55 ASSPLQVPYDPYTYSQNFDQGTAKDEPDNFSRSFSVRFA 93

[Close]

BLAST of Lsi06G008860 vs. NCBI nr
Match: gi|734374771|gb|KHN20690.1| (hypothetical protein glysoja_019007 [Glycine soja])

HSP 1 Score: 58.2 bits (139), Expect = 6.5e-06
Identity = 26/39 (66.67%), Postives = 31/39 (79.49%), Query Frame = 1


Query: 12 SSGPKLIPYDAFSYSQNFDQGTAGEELDNLSRSFSARFA 51
          +S P  +PYD ++YSQNFDQGTA +E DN SRSFS RFA
Sbjct: 41 ASSPLQVPYDPYTYSQNFDQGTAKDEPDNFSRSFSVRFA 79

The following BLAST results are available for this feature:

BLAST of Lsi06G008860 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi06G008860 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWX3_CUCSA	1.1e-23	87.69	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G370510 PE=4 SV=1	[more]
A0A151S3I6_CAJCA	1.2e-06	68.29	Uncharacterized protein OS=Cajanus cajan GN=KK1_028966 PE=4 SV=1	[more]
A0A0B2QHG5_GLYSO	4.5e-06	66.67	Uncharacterized protein OS=Glycine soja GN=glysoja_019007 PE=4 SV=1	[more]
I1KIS1_SOYBN	4.5e-06	66.67	Uncharacterized protein OS=Glycine max GN=GLYMA_07G087300 PE=4 SV=1	[more]

BLAST of Lsi06G008860 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi06G008860 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700210261\|gb\|KGN65357.1\|	1.5e-23	87.69	hypothetical protein Csa_1G370510 [Cucumis sativus]	[more]
gi\|719980368\|ref\|XP_010249774.1\|	1.1e-08	78.05	PREDICTED: uncharacterized protein LOC104592237 [Nelumbo nucifera]	[more]
gi\|1012338067\|gb\|KYP49328.1\|	1.7e-06	68.29	hypothetical protein KK1_028966 [Cajanus cajan]	[more]
gi\|571468246\|ref\|XP_006584187.1\|	6.5e-06	66.67	PREDICTED: uncharacterized protein LOC102669499 [Glycine max]	[more]
gi\|734374771\|gb\|KHN20690.1\|	6.5e-06	66.67	hypothetical protein glysoja_019007 [Glycine soja]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G008860.1	Lsi06G008860.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33168	FAMILY NOT NAMED	coord: 12..50 score: 2.5
None	No IPR available	PANTHER	PTHR33168:SF12	EXPRESSED PROTEIN	coord: 12..50 score: 2.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi06G008860	Csa1G370510	Cucumber (Chinese Long) v2	culsiB062
Lsi06G008860	CSPI01G19340	Wild cucumber (PI 183967)	cpilsiB063
Lsi06G008860	Cucsa.235600	Cucumber (Gy14) v1	cgylsiB382
Lsi06G008860	Cla010623	Watermelon (97103) v1	lsiwmB419
Lsi06G008860	MELO3C029688.2	Melon (DHL92) v3.6.1	lsimedB425
Lsi06G008860	Cla97C06G118190	Watermelon (97103) v2	lsiwmbB378
Lsi06G008860	Bhi02G000930	Wax gourd	lsiwgoB518
Lsi06G008860	Carg12186	Silver-seed gourd	carlsiB037
Lsi06G008860	CsaV3_1G030570	Cucumber (Chinese Long) v3	cuclsiB072

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G008860	Watermelon (97103) v2	lsiwmbB358
Lsi06G008860	Watermelon (97103) v2	lsiwmbB385
Lsi06G008860	Wax gourd	lsiwgoB474
Lsi06G008860	Bottle gourd (USVL1VR-Ls)	lsilsiB057
Lsi06G008860	Cucumber (Gy14) v1	cgylsiB165
Lsi06G008860	Cucurbita maxima (Rimu)	cmalsiB074
Lsi06G008860	Cucurbita maxima (Rimu)	cmalsiB145
Lsi06G008860	Cucurbita maxima (Rimu)	cmalsiB182
Lsi06G008860	Cucurbita maxima (Rimu)	cmalsiB735
Lsi06G008860	Cucurbita moschata (Rifu)	cmolsiB060
Lsi06G008860	Cucurbita moschata (Rifu)	cmolsiB129
Lsi06G008860	Cucurbita moschata (Rifu)	cmolsiB172
Lsi06G008860	Cucurbita moschata (Rifu)	cmolsiB725
Lsi06G008860	Cucurbita pepo (Zucchini)	cpelsiB096
Lsi06G008860	Cucurbita pepo (Zucchini)	cpelsiB300
Lsi06G008860	Cucurbita pepo (Zucchini)	cpelsiB557
Lsi06G008860	Cucurbita pepo (Zucchini)	cpelsiB684
Lsi06G008860	Wild cucumber (PI 183967)	cpilsiB130
Lsi06G008860	Cucumber (Chinese Long) v2	culsiB131
Lsi06G008860	Melon (DHL92) v3.5.1	lsimeB403
Lsi06G008860	Melon (DHL92) v3.5.1	lsimeB418
Lsi06G008860	Watermelon (Charleston Gray)	lsiwcgB354
Lsi06G008860	Watermelon (97103) v1	lsiwmB412
Lsi06G008860	Cucumber (Gy14) v2	cgyblsiB059
Lsi06G008860	Cucumber (Gy14) v2	cgyblsiB120
Lsi06G008860	Melon (DHL92) v3.6.1	lsimedB417
Lsi06G008860	Melon (DHL92) v3.6.1	lsimedB440
Lsi06G008860	Silver-seed gourd	carlsiB115
Lsi06G008860	Silver-seed gourd	carlsiB518
Lsi06G008860	Cucumber (Chinese Long) v3	cuclsiB142