Cla010623 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla010623
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr6 : 11736443 .. 11736760 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAAGCAGGGGAGGAGAACGATAAGGTTGGGGGATTGGAGAGGCGAAAATAAGCAGCCGCCCAATATGTGGAAGGCTTTGTGGAGGAAGTTGAGAAGAGAAAAGAGGAAGATTTTAGAGCTGTCTCAAAGGACCAACTCCTTTTATTCTTCAGGCCCCAAATTGATTCCTTACGATCCTCTCTCTTATTCTCAGAATTTCGATCAATCCACCGCCGGTGAAGAACTCGATAATCTTTCCCGCTCCTTCTCCGCCCGCTTCGCTCTCGCCGATGTTGCTTCCACAATCTTTCTTCACCAACAACATCTTCAATGA

mRNA sequence

ATGGGAAAGCAGGGGAGGAGAACGATAAGGTTGGGGGATTGGAGAGGCGAAAATAAGCAGCCGCCCAATATGTGGAAGGCTTTGTGGAGGAAGTTGAGAAGAGAAAAGAGGAAGATTTTAGAGCTGTCTCAAAGGACCAACTCCTTTTATTCTTCAGGCCCCAAATTGATTCCTTACGATCCTCTCTCTTATTCTCAGAATTTCGATCAATCCACCGCCGGTGAAGAACTCGATAATCTTTCCCGCTCCTTCTCCGCCCGCTTCGCTCTCGCCGATGTTGCTTCCACAATCTTTCTTCACCAACAACATCTTCAATGA

Coding sequence (CDS)

ATGGGAAAGCAGGGGAGGAGAACGATAAGGTTGGGGGATTGGAGAGGCGAAAATAAGCAGCCGCCCAATATGTGGAAGGCTTTGTGGAGGAAGTTGAGAAGAGAAAAGAGGAAGATTTTAGAGCTGTCTCAAAGGACCAACTCCTTTTATTCTTCAGGCCCCAAATTGATTCCTTACGATCCTCTCTCTTATTCTCAGAATTTCGATCAATCCACCGCCGGTGAAGAACTCGATAATCTTTCCCGCTCCTTCTCCGCCCGCTTCGCTCTCGCCGATGTTGCTTCCACAATCTTTCTTCACCAACAACATCTTCAATGA

Protein sequence

MGKQGRRTIRLGDWRGENKQPPNMWKALWRKLRREKRKILELSQRTNSFYSSGPKLIPYDPLSYSQNFDQSTAGEELDNLSRSFSARFALADVASTIFLHQQHLQ

Homology

[Close]

BLAST of Cla010623 vs. TrEMBL
Match: A0A0A0LWX3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G370510 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 9.6e-43
Identity = 89/104 (85.58%), Postives = 91/104 (87.50%), Query Frame = 1


Query: 1   MGKQGRRTIRLGDWRGENKQPPNMWKALWRKLRREKRKILELSQRTNSFYSSGPKLIPYD 60
           M KQGR TIRLG WRGENKQ PNMWK LWRKLRREKRKILE S  T +FYSSGPKLIPYD
Sbjct: 4   MRKQGRTTIRLGGWRGENKQQPNMWKVLWRKLRREKRKILE-SSNTTTFYSSGPKLIPYD 63

Query: 61  PLSYSQNFDQSTAGEELDNLSRSFSARFALADVASTIFLHQQHL 105
           P SYSQNFDQ TAGEELDNLSRSFSARFALADVAS  FLH+QHL
Sbjct: 64  PFSYSQNFDQGTAGEELDNLSRSFSARFALADVASATFLHKQHL 106

[Close]

BLAST of Cla010623 vs. TrEMBL
Match: A0A151S3I6_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_028966 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.0e-11
Identity = 37/65 (56.92%), Postives = 44/65 (67.69%), Query Frame = 1


Query: 25 WKALWRKLRREKRKILELSQRTNSFYSSGPKLIPYDPLSYSQNFDQSTAGEELDNLSRSF 84
          WK LW KL++EK+K+ E         S+ P  +PYDP SYSQNFDQ TA +E DNLSRSF
Sbjct: 35 WKVLWMKLKKEKKKLFE---------SASPLQVPYDPYSYSQNFDQGTAKDEPDNLSRSF 90

Query: 85 SARFA 90
            RFA
Sbjct: 95 CVRFA 90

[Close]

BLAST of Cla010623 vs. TrEMBL
Match: V7CQ59_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G313800g PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.4e-11
Identity = 40/85 (47.06%), Postives = 51/85 (60.00%), Query Frame = 1


Query: 5  GRRTIRLGDWRGENKQPPNMWKALWRKLRREKRKILELSQRTNSFYSSGPKLIPYDPLSY 64
          G+RT+ LG    E       WK LW K++REK+++ E         S+    +PYD  +Y
Sbjct: 10 GKRTVHLGRCHHEIVATKLRWKLLWMKIKREKKRLFE---------SAASFQVPYDQQTY 69

Query: 65 SQNFDQSTAGEELDNLSRSFSARFA 90
          SQNFDQ TA +E DNLSRSFS RFA
Sbjct: 70 SQNFDQGTALDEPDNLSRSFSVRFA 85

[Close]

BLAST of Cla010623 vs. TrEMBL
Match: A0A0B2QHG5_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_019007 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.4e-11
Identity = 36/65 (55.38%), Postives = 44/65 (67.69%), Query Frame = 1


Query: 25 WKALWRKLRREKRKILELSQRTNSFYSSGPKLIPYDPLSYSQNFDQSTAGEELDNLSRSF 84
          WK LW KL++EK+K+ E +        S P  +PYDP +YSQNFDQ TA +E DN SRSF
Sbjct: 23 WKVLWMKLKKEKKKLFESA--------SSPLQVPYDPYTYSQNFDQGTAKDEPDNFSRSF 79

Query: 85 SARFA 90
          S RFA
Sbjct: 83 SVRFA 79

[Close]

BLAST of Cla010623 vs. TrEMBL
Match: I1KIS1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_07G087300 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.4e-11
Identity = 36/65 (55.38%), Postives = 44/65 (67.69%), Query Frame = 1


Query: 25 WKALWRKLRREKRKILELSQRTNSFYSSGPKLIPYDPLSYSQNFDQSTAGEELDNLSRSF 84
          WK LW KL++EK+K+ E +        S P  +PYDP +YSQNFDQ TA +E DN SRSF
Sbjct: 37 WKVLWMKLKKEKKKLFESA--------SSPLQVPYDPYTYSQNFDQGTAKDEPDNFSRSF 93

Query: 85 SARFA 90
          S RFA
Sbjct: 97 SVRFA 93

[Close]

BLAST of Cla010623 vs. NCBI nr
Match: gi|700210261|gb|KGN65357.1| (hypothetical protein Csa_1G370510 [Cucumis sativus])

HSP 1 Score: 180.6 bits (457), Expect = 1.4e-42
Identity = 89/104 (85.58%), Postives = 91/104 (87.50%), Query Frame = 1


Query: 1   MGKQGRRTIRLGDWRGENKQPPNMWKALWRKLRREKRKILELSQRTNSFYSSGPKLIPYD 60
           M KQGR TIRLG WRGENKQ PNMWK LWRKLRREKRKILE S  T +FYSSGPKLIPYD
Sbjct: 4   MRKQGRTTIRLGGWRGENKQQPNMWKVLWRKLRREKRKILE-SSNTTTFYSSGPKLIPYD 63

Query: 61  PLSYSQNFDQSTAGEELDNLSRSFSARFALADVASTIFLHQQHL 105
           P SYSQNFDQ TAGEELDNLSRSFSARFALADVAS  FLH+QHL
Sbjct: 64  PFSYSQNFDQGTAGEELDNLSRSFSARFALADVASATFLHKQHL 106

[Close]

BLAST of Cla010623 vs. NCBI nr
Match: gi|719980368|ref|XP_010249774.1| (PREDICTED: uncharacterized protein LOC104592237 [Nelumbo nucifera])

HSP 1 Score: 77.4 bits (189), Expect = 1.6e-11
Identity = 38/65 (58.46%), Postives = 45/65 (69.23%), Query Frame = 1


Query: 25  WKALWRKLRREKRKILELSQRTNSFYSSGPKLIPYDPLSYSQNFDQSTAGEELDNLSRSF 84
           W+ LWR++ +EK+KI         FYSS P  +PYD  SYSQNFDQ +A  E DNLSRSF
Sbjct: 55  WRVLWRRIMKEKKKI---------FYSSSPLQVPYDAYSYSQNFDQGSAWTEPDNLSRSF 110

Query: 85  SARFA 90
           SARFA
Sbjct: 115 SARFA 110

[Close]

BLAST of Cla010623 vs. NCBI nr
Match: gi|1012338067|gb|KYP49328.1| (hypothetical protein KK1_028966 [Cajanus cajan])

HSP 1 Score: 76.6 bits (187), Expect = 2.8e-11
Identity = 37/65 (56.92%), Postives = 44/65 (67.69%), Query Frame = 1


Query: 25 WKALWRKLRREKRKILELSQRTNSFYSSGPKLIPYDPLSYSQNFDQSTAGEELDNLSRSF 84
          WK LW KL++EK+K+ E         S+ P  +PYDP SYSQNFDQ TA +E DNLSRSF
Sbjct: 35 WKVLWMKLKKEKKKLFE---------SASPLQVPYDPYSYSQNFDQGTAKDEPDNLSRSF 90

Query: 85 SARFA 90
            RFA
Sbjct: 95 CVRFA 90

[Close]

BLAST of Cla010623 vs. NCBI nr
Match: gi|571468246|ref|XP_006584187.1| (PREDICTED: uncharacterized protein LOC102669499 [Glycine max])

HSP 1 Score: 75.5 bits (184), Expect = 6.3e-11
Identity = 36/65 (55.38%), Postives = 44/65 (67.69%), Query Frame = 1


Query: 25 WKALWRKLRREKRKILELSQRTNSFYSSGPKLIPYDPLSYSQNFDQSTAGEELDNLSRSF 84
          WK LW KL++EK+K+ E +        S P  +PYDP +YSQNFDQ TA +E DN SRSF
Sbjct: 37 WKVLWMKLKKEKKKLFESA--------SSPLQVPYDPYTYSQNFDQGTAKDEPDNFSRSF 93

Query: 85 SARFA 90
          S RFA
Sbjct: 97 SVRFA 93

[Close]

BLAST of Cla010623 vs. NCBI nr
Match: gi|734374771|gb|KHN20690.1| (hypothetical protein glysoja_019007 [Glycine soja])

HSP 1 Score: 75.5 bits (184), Expect = 6.3e-11
Identity = 36/65 (55.38%), Postives = 44/65 (67.69%), Query Frame = 1


Query: 25 WKALWRKLRREKRKILELSQRTNSFYSSGPKLIPYDPLSYSQNFDQSTAGEELDNLSRSF 84
          WK LW KL++EK+K+ E +        S P  +PYDP +YSQNFDQ TA +E DN SRSF
Sbjct: 23 WKVLWMKLKKEKKKLFESA--------SSPLQVPYDPYTYSQNFDQGTAKDEPDNFSRSF 79

Query: 85 SARFA 90
          S RFA
Sbjct: 83 SVRFA 79

The following BLAST results are available for this feature:

BLAST of Cla010623 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWX3_CUCSA	9.6e-43	85.58	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G370510 PE=4 SV=1	[more]
A0A151S3I6_CAJCA	2.0e-11	56.92	Uncharacterized protein OS=Cajanus cajan GN=KK1_028966 PE=4 SV=1	[more]
V7CQ59_PHAVU	4.4e-11	47.06	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G313800g PE=4 SV=1	[more]
A0A0B2QHG5_GLYSO	4.4e-11	55.38	Uncharacterized protein OS=Glycine soja GN=glysoja_019007 PE=4 SV=1	[more]
I1KIS1_SOYBN	4.4e-11	55.38	Uncharacterized protein OS=Glycine max GN=GLYMA_07G087300 PE=4 SV=1	[more]

BLAST of Cla010623 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700210261\|gb\|KGN65357.1\|	1.4e-42	85.58	hypothetical protein Csa_1G370510 [Cucumis sativus]	[more]
gi\|719980368\|ref\|XP_010249774.1\|	1.6e-11	58.46	PREDICTED: uncharacterized protein LOC104592237 [Nelumbo nucifera]	[more]
gi\|1012338067\|gb\|KYP49328.1\|	2.8e-11	56.92	hypothetical protein KK1_028966 [Cajanus cajan]	[more]
gi\|571468246\|ref\|XP_006584187.1\|	6.3e-11	55.38	PREDICTED: uncharacterized protein LOC102669499 [Glycine max]	[more]
gi\|734374771\|gb\|KHN20690.1\|	6.3e-11	55.38	hypothetical protein glysoja_019007 [Glycine soja]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0009269	response to desiccation
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla010623	Cla010623.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33168	FAMILY NOT NAMED	coord: 1..89 score: 1.3
None	No IPR available	PANTHER	PTHR33168:SF12	EXPRESSED PROTEIN	coord: 1..89 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla010623	Cla97C06G118190	Watermelon (97103) v2	wmwmbB406
Cla010623	Csa1G370510	Cucumber (Chinese Long) v2	cuwmB098
Cla010623	CSPI01G19340	Wild cucumber (PI 183967)	cpiwmB103
Cla010623	Cucsa.235600	Cucumber (Gy14) v1	cgywmB439
Cla010623	CmoCh11G006030	Cucurbita moschata (Rifu)	cmowmB123
Cla010623	Lsi06G008860	Bottle gourd (USVL1VR-Ls)	lsiwmB419
Cla010623	MELO3C029688.2	Melon (DHL92) v3.6.1	medwmB284
Cla010623	Carg12186	Silver-seed gourd	carwmB0039
Cla010623	CsaV3_1G030570	Cucumber (Chinese Long) v3	cucwmB108
Cla010623	Bhi02G000930	Wax gourd	wgowmB680

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla010623	Watermelon (Charleston Gray)	wcgwmB344