CsaV3_1G030570 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G030570
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Serine/threonine-protein kinase AFC3
Location	chr1 : 17490201 .. 17490691 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAGATCTCCAAAGTGATGAAAATTATGAGGAAGCAAGGGAGAACAACGATCAGATTGGGAGGTTGGAGAGGAGAAAATAAGCAACAGCCAAATATGTGGAAGGTTTTATGGAGGAAATTAAGAAGAGAAAAGAGGAAGATTTTAGAGTCGTCTAATACAACCACGTTTTATTCGTCAGGCCCCAAGTTGATTCCTTATGATCCCTTCTCTTATTCTCAGAATTTCGATCAAGGCACCGCCGGAGAAGAACTTGACAATCTTTCCCGATCCTTCTCCGCCCGCTTTGCTCTAGCCGATGTCGCTTCCGCAACCTTTCTTCACAAACAACATCTTCCATAAGTTTTACCCTTTTTTCTCCTTAGTAACTCTATTTCTAATCCTTGTATACTACGGAATCAACCCGATTGATATAGTTTCAATGTGCTGTCTTCTCCACCTCTTTTACTTATATTCCTTGACTAGTTCTGAGTATAATTACTTCAAATTTAC

mRNA sequence

AAGATCTCCAAAGTGATGAAAATTATGAGGAAGCAAGGGAGAACAACGATCAGATTGGGAGGTTGGAGAGGAGAAAATAAGCAACAGCCAAATATGTGGAAGGTTTTATGGAGGAAATTAAGAAGAGAAAAGAGGAAGATTTTAGAGTCGTCTAATACAACCACGTTTTATTCGTCAGGCCCCAAGTTGATTCCTTATGATCCCTTCTCTTATTCTCAGAATTTCGATCAAGGCACCGCCGGAGAAGAACTTGACAATCTTTCCCGATCCTTCTCCGCCCGCTTTGCTCTAGCCGATGTCGCTTCCGCAACCTTTCTTCACAAACAACATCTTCCATAA

Coding sequence (CDS)

AAGATCTCCAAAGTGATGAAAATTATGAGGAAGCAAGGGAGAACAACGATCAGATTGGGAGGTTGGAGAGGAGAAAATAAGCAACAGCCAAATATGTGGAAGGTTTTATGGAGGAAATTAAGAAGAGAAAAGAGGAAGATTTTAGAGTCGTCTAATACAACCACGTTTTATTCGTCAGGCCCCAAGTTGATTCCTTATGATCCCTTCTCTTATTCTCAGAATTTCGATCAAGGCACCGCCGGAGAAGAACTTGACAATCTTTCCCGATCCTTCTCCGCCCGCTTTGCTCTAGCCGATGTCGCTTCCGCAACCTTTCTTCACAAACAACATCTTCCATAA

Protein sequence

KISKVMKIMRKQGRTTIRLGGWRGENKQQPNMWKVLWRKLRREKRKILESSNTTTFYSSGPKLIPYDPFSYSQNFDQGTAGEELDNLSRSFSARFALADVASATFLHKQHLP

Homology

[Close]

BLAST of CsaV3_1G030570 vs. NCBI nr
Match: KGN65357.1 (hypothetical protein Csa_1G370510 [Cucumis sativus])

HSP 1 Score: 219.2 bits (557), Expect = 7.3e-54
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 6   MKIMRKQGRTTIRLGGWRGENKQQPNMWKVLWRKLRREKRKILESSNTTTFYSSGPKLIP 65
           MKIMRKQGRTTIRLGGWRGENKQQPNMWKVLWRKLRREKRKILESSNTTTFYSSGPKLIP
Sbjct: 1   MKIMRKQGRTTIRLGGWRGENKQQPNMWKVLWRKLRREKRKILESSNTTTFYSSGPKLIP 60

Query: 66  YDPFSYSQNFDQGTAGEELDNLSRSFSARFALADVASATFLHKQHLP 113
           YDPFSYSQNFDQGTAGEELDNLSRSFSARFALADVASATFLHKQHLP
Sbjct: 61  YDPFSYSQNFDQGTAGEELDNLSRSFSARFALADVASATFLHKQHLP 107

[Close]

BLAST of CsaV3_1G030570 vs. NCBI nr
Match: XP_006584187.1 (uncharacterized protein LOC102669499 [Glycine max] >KRH48409.1 hypothetical protein GLYMA_07G087300 [Glycine max])

HSP 1 Score: 82.4 bits (202), Expect = 1.1e-12
Identity = 43/85 (50.59%), Postives = 57/85 (67.06%), Query Frame = 0


Query: 27  KQQPNMWKVLWRKLRREKRKILESSNTTTFYSSGPKLIPYDPFSYSQNFDQGTAGEELDN 86
           K     WKVLW KL++EK+K+ ES       +S P  +PYDP++YSQNFDQGTA +E DN
Sbjct: 31  KSSKMRWKVLWMKLKKEKKKLFES-------ASSPLQVPYDPYTYSQNFDQGTAKDEPDN 90

Query: 87  LSRSFSARFALADVASATFLHKQHL 112
            SRSFS RF  AD +++  L K+ +
Sbjct: 91  FSRSFSVRF--ADPSTSRVLMKKRV 106

[Close]

BLAST of CsaV3_1G030570 vs. NCBI nr
Match: KHN20690.1 (hypothetical protein glysoja_019007 [Glycine soja])

HSP 1 Score: 82.4 bits (202), Expect = 1.1e-12
Identity = 43/85 (50.59%), Postives = 57/85 (67.06%), Query Frame = 0


Query: 27  KQQPNMWKVLWRKLRREKRKILESSNTTTFYSSGPKLIPYDPFSYSQNFDQGTAGEELDN 86
           K     WKVLW KL++EK+K+ ES       +S P  +PYDP++YSQNFDQGTA +E DN
Sbjct: 17  KSSKMRWKVLWMKLKKEKKKLFES-------ASSPLQVPYDPYTYSQNFDQGTAKDEPDN 76

Query: 87  LSRSFSARFALADVASATFLHKQHL 112
            SRSFS RF  AD +++  L K+ +
Sbjct: 77  FSRSFSVRF--ADPSTSRVLMKKRV 92

[Close]

BLAST of CsaV3_1G030570 vs. NCBI nr
Match: KYP49328.1 (hypothetical protein KK1_028966 [Cajanus cajan])

HSP 1 Score: 80.9 bits (198), Expect = 3.1e-12
Identity = 39/64 (60.94%), Postives = 48/64 (75.00%), Query Frame = 0


Query: 33 WKVLWRKLRREKRKILESSNTTTFYSSGPKLIPYDPFSYSQNFDQGTAGEELDNLSRSFS 92
          WKVLW KL++EK+K+ ES++        P  +PYDP+SYSQNFDQGTA +E DNLSRSF 
Sbjct: 35 WKVLWMKLKKEKKKLFESAS--------PLQVPYDPYSYSQNFDQGTAKDEPDNLSRSFC 90

Query: 93 ARFA 97
           RFA
Sbjct: 95 VRFA 90

[Close]

BLAST of CsaV3_1G030570 vs. NCBI nr
Match: RDX89602.1 (hypothetical protein CR513_28657, partial [Mucuna pruriens])

HSP 1 Score: 80.5 bits (197), Expect = 4.1e-12
Identity = 38/64 (59.38%), Postives = 49/64 (76.56%), Query Frame = 0


Query: 33  WKVLWRKLRREKRKILESSNTTTFYSSGPKLIPYDPFSYSQNFDQGTAGEELDNLSRSFS 92
           WK+LW KL++EK+K+ ES++        P  +PYDP++YSQNFDQGTA +E DNLSRSFS
Sbjct: 45  WKMLWMKLKKEKKKLFESAS--------PVQVPYDPYTYSQNFDQGTAKDEPDNLSRSFS 100

Query: 93  ARFA 97
            RFA
Sbjct: 105 VRFA 100

[Close]

BLAST of CsaV3_1G030570 vs. TAIR10
Match: AT2G25735.1 (unknown protein)

HSP 1 Score: 46.6 bits (109), Expect = 1.2e-05
Identity = 37/95 (38.95%), Postives = 48/95 (50.53%), Query Frame = 0


Query: 14  RTTIRLGGWRGENKQQPN---------MWKVLWRKLRREKRKILESSNTTTFYSSGPKLI 73
           R TI LG +    ++Q            WKVL  KL     K+L S  ++T      K++
Sbjct: 23  RETIVLGRYSKSCREQKQHQRRERLLPKWKVLLMKL-----KLLPSRASST------KVV 82

Query: 74  PYDPFSYSQNFDQGTA---GEELDNLSRSFSARFA 97
            Y+P  YS NFDQG      +E +NLSRSFS RFA
Sbjct: 83  AYEPCDYSLNFDQGPGWHDHDEPENLSRSFSCRFA 106

[Close]

BLAST of CsaV3_1G030570 vs. TrEMBL
Match: tr|A0A0A0LWX3|A0A0A0LWX3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G370510 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 4.8e-54
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 6   MKIMRKQGRTTIRLGGWRGENKQQPNMWKVLWRKLRREKRKILESSNTTTFYSSGPKLIP 65
           MKIMRKQGRTTIRLGGWRGENKQQPNMWKVLWRKLRREKRKILESSNTTTFYSSGPKLIP
Sbjct: 1   MKIMRKQGRTTIRLGGWRGENKQQPNMWKVLWRKLRREKRKILESSNTTTFYSSGPKLIP 60

Query: 66  YDPFSYSQNFDQGTAGEELDNLSRSFSARFALADVASATFLHKQHLP 113
           YDPFSYSQNFDQGTAGEELDNLSRSFSARFALADVASATFLHKQHLP
Sbjct: 61  YDPFSYSQNFDQGTAGEELDNLSRSFSARFALADVASATFLHKQHLP 107

[Close]

BLAST of CsaV3_1G030570 vs. TrEMBL
Match: tr|I1KIS1|I1KIS1_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=102669499 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 7.1e-13
Identity = 43/85 (50.59%), Postives = 57/85 (67.06%), Query Frame = 0


Query: 27  KQQPNMWKVLWRKLRREKRKILESSNTTTFYSSGPKLIPYDPFSYSQNFDQGTAGEELDN 86
           K     WKVLW KL++EK+K+ ES       +S P  +PYDP++YSQNFDQGTA +E DN
Sbjct: 31  KSSKMRWKVLWMKLKKEKKKLFES-------ASSPLQVPYDPYTYSQNFDQGTAKDEPDN 90

Query: 87  LSRSFSARFALADVASATFLHKQHL 112
            SRSFS RF  AD +++  L K+ +
Sbjct: 91  FSRSFSVRF--ADPSTSRVLMKKRV 106

[Close]

BLAST of CsaV3_1G030570 vs. TrEMBL
Match: tr|A0A151S3I6|A0A151S3I6_CAJCA (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_028966 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.1e-12
Identity = 39/64 (60.94%), Postives = 48/64 (75.00%), Query Frame = 0


Query: 33 WKVLWRKLRREKRKILESSNTTTFYSSGPKLIPYDPFSYSQNFDQGTAGEELDNLSRSFS 92
          WKVLW KL++EK+K+ ES++        P  +PYDP+SYSQNFDQGTA +E DNLSRSF 
Sbjct: 35 WKVLWMKLKKEKKKLFESAS--------PLQVPYDPYSYSQNFDQGTAKDEPDNLSRSFC 90

Query: 93 ARFA 97
           RFA
Sbjct: 95 VRFA 90

[Close]

BLAST of CsaV3_1G030570 vs. TrEMBL
Match: tr|V7C629|V7C629_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_004G162400g PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.0e-11
Identity = 40/79 (50.63%), Postives = 57/79 (72.15%), Query Frame = 0


Query: 33  WKVLWRKLRREKRKILESSNTTTFYSSGPKLIPYDPFSYSQNFDQGTAGEELDNLSRSFS 92
           WKVLW KL++EK+K+ ES++        P  +PY+P++YS NFD+GTA +ELDNL RSFS
Sbjct: 37  WKVLWMKLKKEKKKLFESAS--------PLQLPYNPYTYSLNFDKGTAKDELDNLYRSFS 96

Query: 93  ARFALADVASATFLHKQHL 112
            +F  AD +S+T L K+ +
Sbjct: 97  VQF--ADPSSSTLLVKKEV 105

[Close]

BLAST of CsaV3_1G030570 vs. TrEMBL
Match: tr|A0A1S2YE01|A0A1S2YE01_CICAR (uncharacterized protein LOC101493656 OS=Cicer arietinum OX=3827 GN=LOC101493656 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.7e-11
Identity = 36/64 (56.25%), Postives = 49/64 (76.56%), Query Frame = 0


Query: 33 WKVLWRKLRREKRKILESSNTTTFYSSGPKLIPYDPFSYSQNFDQGTAGEELDNLSRSFS 92
          WK+LW KL++EK+K+ E +++T       + +PYDP++YSQNFDQGT  +E DNLSRSFS
Sbjct: 39 WKMLWMKLKKEKKKLFECASSTL------QQVPYDPYTYSQNFDQGTVFDEPDNLSRSFS 96

Query: 93 ARFA 97
           RFA
Sbjct: 99 VRFA 96

The following BLAST results are available for this feature:

BLAST of CsaV3_1G030570 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65357.1	7.3e-54	100.00	hypothetical protein Csa_1G370510 [Cucumis sativus]	[more]
XP_006584187.1	1.1e-12	50.59	uncharacterized protein LOC102669499 [Glycine max] >KRH48409.1 hypothetical prot...	[more]
KHN20690.1	1.1e-12	50.59	hypothetical protein glysoja_019007 [Glycine soja]	[more]
KYP49328.1	3.1e-12	60.94	hypothetical protein KK1_028966 [Cajanus cajan]	[more]
RDX89602.1	4.1e-12	59.38	hypothetical protein CR513_28657, partial [Mucuna pruriens]	[more]

BLAST of CsaV3_1G030570 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G25735.1	1.2e-05	38.95	unknown protein	[more]

BLAST of CsaV3_1G030570 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G030570 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LWX3\|A0A0A0LWX3_CUCSA	4.8e-54	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G370510 PE=4 SV=1	[more]
tr\|I1KIS1\|I1KIS1_SOYBN	7.1e-13	50.59	Uncharacterized protein OS=Glycine max OX=3847 GN=102669499 PE=4 SV=1	[more]
tr\|A0A151S3I6\|A0A151S3I6_CAJCA	2.1e-12	60.94	Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_028966 PE=4 SV=1	[more]
tr\|V7C629\|V7C629_PHAVU	1.0e-11	50.63	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_004G162400g PE=4 ...	[more]
tr\|A0A1S2YE01\|A0A1S2YE01_CICAR	1.7e-11	56.25	uncharacterized protein LOC101493656 OS=Cicer arietinum OX=3827 GN=LOC101493656 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G030570.1	CsaV3_1G030570.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33168	FAMILY NOT NAMED	coord: 27..98
None	No IPR available	PANTHER	PTHR33168:SF6	SUBFAMILY NOT NAMED	coord: 27..98

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G030570	CSPI01G19340	Wild cucumber (PI 183967)	cpicucB000
CsaV3_1G030570	Cucsa.235600	Cucumber (Gy14) v1	cgycucB353
CsaV3_1G030570	CmoCh11G006030	Cucurbita moschata (Rifu)	cmocucB0104
CsaV3_1G030570	Carg12186	Silver-seed gourd	carcucB0040
CsaV3_1G030570	Cla010623	Watermelon (97103) v1	cucwmB108
CsaV3_1G030570	Lsi06G008860	Bottle gourd (USVL1VR-Ls)	cuclsiB072
CsaV3_1G030570	MELO3C029688.2	Melon (DHL92) v3.6.1	cucmedB055
CsaV3_1G030570	Cla97C06G118190	Watermelon (97103) v2	cucwmbB082
CsaV3_1G030570	Bhi02G000930	Wax gourd	cucwgoB108

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G030570	Silver-seed gourd	carcucB0144
CsaV3_1G030570	Silver-seed gourd	carcucB0603
CsaV3_1G030570	Cucumber (Gy14) v2	cgybcucB001
CsaV3_1G030570	Cucumber (Gy14) v2	cgybcucB059
CsaV3_1G030570	Cucurbita maxima (Rimu)	cmacucB0073
CsaV3_1G030570	Cucurbita maxima (Rimu)	cmacucB0116
CsaV3_1G030570	Cucurbita moschata (Rifu)	cmocucB0060
CsaV3_1G030570	Cucurbita pepo (Zucchini)	cpecucB0105
CsaV3_1G030570	Cucurbita pepo (Zucchini)	cpecucB0434
CsaV3_1G030570	Cucurbita pepo (Zucchini)	cpecucB0800
CsaV3_1G030570	Wild cucumber (PI 183967)	cpicucB073
CsaV3_1G030570	Bottle gourd (USVL1VR-Ls)	cuclsiB010
CsaV3_1G030570	Melon (DHL92) v3.5.1	cucmeB058
CsaV3_1G030570	Melon (DHL92) v3.5.1	cucmeB082
CsaV3_1G030570	Melon (DHL92) v3.6.1	cucmedB076
CsaV3_1G030570	Watermelon (Charleston Gray)	cucwcgB009
CsaV3_1G030570	Watermelon (97103) v1	cucwmB090
CsaV3_1G030570	Cucumber (Chinese Long) v3	cuccucB009