Lsi06G006010 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G006010
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	E3 ubiquitin-protein ligase RHF2A-like protein
Location	chr06 : 8259905 .. 8266824 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGAAATGCATTGGACGGGTTTACCAATAAGGATAGACGTGGGGCATTAGTACGAAAGCGAGTGGCGCAAGTAGTAAAGTCCTTAAAATTCCTCCACGCGTTAAAAACTTTAAACCCCCAAAAATCAGCCGATGACCGACCATAACCAAACTCAGCTCTCACCACCAGCTTTTTCCCAAGTCAAGACCGGAGCCGCCACACCCACCGTCAACTCCGCCTCAATTCTCCTCCTCCTTTACCTAGGGTTTCACTGATTTCAATCCAATCAACATCGCACTGCTCATCCTCGTTTCTCATGGAGGTACTACTCCGATTTCCTTCCTTCAATTTTCTCTCTTCTTGACTTTTTTTTTTTTTTTTGCTTGCTTCTTGTTTCTCTTGCGTTTGACGTCTCTATCTTTTAATTCTCTCGCCGATGAAGATTGTTCTTTCTTGGAATATTTTTGTATTTTACCTACTTTTCTCCATTTTTTCGGATTCCGTTTTTCTTGGCTGTTATTCGGAGGATAAAGTGGACGCGGATGGATATATTCTGTTGCCGGATTCTTTTTCTCTTCTTATCTTGTTTAAGTAACGGGACGTGGAGTGGAACAGCTTTTCTGAGTGTGTTTTCCTCTTGAATTTGCTTTGGCTGTTTCTATATGTTGTTTTTGCGATCTCTGCTTCTCTTCTCTCGGTGCCGGCTTGTTGCGTTTAGCTCTGGAAATTTGTGCGTTTAAGTTCTTTTGTTCTTCGATTCTTTATGGATGTTTGGGTTAGCTGTATGTGCGTGATTTAATTCACTGGAAATGTATGTCGTATCTCTAAATTACACTTGATGGTACTGTATATCATTTCCTTGTTGAGTTGTTTATATATCACGCACTAGATCATGTGCTGCTTGTATATTTTTTGAAGTTTTTCCTGAGAGCTGTGCTTTTTTTTTTCTTTGTTCGTACAGTCTCCAACGATGGACGAAACTAAAAAATCTGAAGCGCATTTGACATCAGCTGCTGCTTTTGTCGAAGGTGGAATCCAGGATGCTTGTGATGACGCTTGCAGTATATGTCTAGAAAACTTCTGTGACAGTGATCCTTCAACGGTATTACTTGTATTGTGATTTGATATTTAGTCGGAAGTCAGATGGTTTCTATTCCACTTAGTCAGGTGCTATATTTTGTTCAGATGACCAGTTGCAAACATGAGTTTCATCTGCAGTGCGTTCTTGAATGGTATTTTTTTTTATTTTATTTTTTTGCAATATCTGTTTGAGATATCAGATTTACTCGTGATCACCTTGTTTTACTATTAATATGGTAACAAAGACGGTGGAAGGATGTTTGAAGCCTATCAAATACCTCACTCTAATTGTGGTTTCTTTTTTTTTGTTTTTTTGTTTTGTTTTTGTTTTGTTTTTGTTTTGTTTTTGTTTTGTTTTTGTTTTGTTTTTGTTTTGTTTTTGTTTTGTTTTTGTTTTGTTTTTGTTTTGTTTTTGTTTTGTTTTTGTTTTGTTTTTGTTTTGTTTTTGTTTTGTTTTTGTTTTGTTTTTGTTTTGTTTTTGTTTTGTTTTTGTTTTGTTTTTGTTTTGTTTTTGTTTTGTTTTTGTTTTGTTTTTGTTTTGTTTTTGTTTTGTTTTTGTTTTGTTTTTGTTTTGTTTTTGTTTTGTTTTTGTTTTGTTTTTGTTTTGTTTTTGTTTTGTTTTTGTTTTGTTTTTGTTTTGTTTTTGTTTTGTTTTTGTTTTGTTTTTGTTTTGTTTTTGTTTTGTTTTTGTTTTGTTTTTGTTTTGTTTTTGTTTTGTTTTTGTTTTGTTTTTGTTTTGTTTTTGTTTTGTTTTTGTTTTGTTTTTGTTTTGTTTTTGTTTTGTTTTTGTTTTGTTTTTGTTTTGTTTTTGTTTTGTTTTTGTTTTGTTTTTGTTTTGTTTTTGTTTTGTTTTTGTTTTGTTTTTGTTTTGTTTTTGTTTTGTTTTTGTTTTGTTTTTGTTTTGTTTTTGTTTTTTTTTTTTTGTAATTAATCAAAAAAGGTTTATACAAGTCTAAGTCCAATGGATACATCATACACCAGTTTGTAACACTGGTGGGTGGGTACGAGGCATTCCCTTTCTAAGAGTATCTCATTTCCTTTTTCCTCCAAAAAGGTAAAAAAAAAGTGAAGTTCTTGGATTTTGGAGGGTTGATTAAATCATGTAAGTGGAATATTGCGTATTTGAATTTTTAAACAGTGGATTTCTCGGTGCGAATAGGAGGAATGCAATTTTGAAGGATTGTGCTAGGTTTCAAGGGGTTTAAACTTTAAGACCGATTAATGAATTTGGATCTGTTACTATTGACAATTCTTTGACTGATTAGTGTGCCAGACTGCCAGTGCATGATGGTGGCAATGGTAGTATTTATAAATTGTAAACTAGTAAGCATCATGGCTTACTTCTCTCATCGTTAAGGCTCAGATGTATTGAACATCTAGATGATTGCTTCCAGTAGATAAGACGGTGGGAATTAAGAATGAGGATGTCTTTTCATTTTGAAGAATGGTGTGTTGAGTTTTCTAATATTATCTCCAGAATATTGAGAAGAGAAAAAAGGTCATCAGATCTCTTCCCATCATCACCAGCAACACTTTTGATGTGACCATATTAGGAAATTAAGTGCAAAATATCTTGTCTGACCTGTTCAGCAAATATTTCTCTGCCTCTCATTATTAAGTTATTAGTTTTGTCAATATCTTTTGCAGTTGCCTAAGTCTTTTGAATGTTCGTCTATTTACTTTTATGTGTGTTTTCATTTTTTGTTGTATTATTTATTACAAGTTTAGATTGCAATTGATCTCTAATATATGTGCTTTCAATATATTGAATCTCAAATGAGAGATTACCTTCTAATAAAGAAAAGAAAAAGAGATAGATAGTATCCATTGCAGGATTGTTTCCTAGAGTTAAACGAGCCATAATTATTTGTTGGATAGTGGAAATCCAGAGATTGCCTTCGGGTGATTACTAATAATTACTAACAAAGAGTTTTACATCAGATTGGTTCTCATCTTCTGTCTTGTACCCTATTCTTTAAGCTTTATCATTGGAAAAAGCTTCCTTCTCTGATAAGGACTTTCAACTATGATTCAATGAATCAATCTTATGGAACTCACCCAGCCTCTCCACTGTTCTACTAAAAAACCTACTCTGGAAGTGTGTGATAATCATGGTCTTTTATAACCAAGTCTCTATTAATTGATTTACAGGAACCTTCTAATTTTGGGTTGTATTTTTATGCTTCCTCTTCTGATGCTCTGGTTTGTTTAGAAAAGTTGGTGTTTTCTTTGATACCTTTCTCATAAAGGCATCAATACTTAAGACAAGATTCAGTAAAGGCACCTCTGTGTTGTTCTTTTTTTTTTAATCTTGGCTTGGTCATACATGGAAGTGGAATAAAATAAATTGGTTTGAGTTTGATTGAGTTAACAAGAACTTGGAACAACTCCCAAGGACTTCTACCACACCTTTTTTGACAAGATCTAGTGATTATTCATATCATCTTGAATTGTCCATTCGCTTCATTTGTGTTTTATGAGGACGAAAGTTATCAATTGAATAGAATAACCTCCTAGACCTGTATCCTAACTTCTGAGAGTCAACGTTGAATTTCACCATCATCTTTTTAGGGAGCTTCGTGTTGCTCCTATTTAGATAAAAATACAATAAACTAACCAATACCATCATTAGATAAAAAATCATTTAAACATGTTTCCTATCAGAATACCAAGCTATATCTAATCGCTTGGATTACTAACTAATACCAAGTTTGCTTGGCTAGTTCATTATCTGCTTCTTAGGCTGCTTGTGTTGTGATTTTGATCCTATGGATCATATATTTTGTTATTGTTAGATAGATTGAGAGGGATTTTTGTTATTTATTTGTTTCTCTCATTCTTTGCCTCATGATACTTTATGGTGGTAGGGCTCAGTTGGGATTTGTTCTATCGGTCTTATGGTTTGTAAGACATGAGAGTTTTTTCATGGAAGGTTTAAAATATCAAGGTTTCTTAGATTAGAATTGAGGTGGTAATTTTTTCTAGTGGAAATGTAATTTTTTTTTTCTGTAGATAAATGCTTTCACGTAATTGTTTGAGCCCTCTATTGCTTTGAGGACATGTGTCTCATCCTTGACTAAAAGTTGTTTCATGAATCAACTGTTCTCTCTTCTGTTTAGAAAAAATGAATTTTCTTAAAATGTGATAAAATACTTCAATTAATGAGCTGCAACATCATTGAGATACATGAAAATATACTGATTTATTTTTAAAAAGTATATTTTTCAACTGGTTTATGCCTTAATCACTTCATAATTTATTTGTCTATTCTTTCTATAGTTATAAAGAAGACTTCCATTAAAAAAGTTGGAAACTATATAGAGCTCCACAATGATAAAAAAATGGTAAGAACACTGTGACCTGAAAAGCCTTGGACCCAAAATGAAATAATTCTGCACAGAAATGAAATCTCGTCTTCATTGAGCAAAATAGTTTAAAGTTCTCAAGTTCCCTCTCTCCAGCCAGATACTCCACGACATGGTCAATATTCCCAGCTCTGCCAAAGTGCTCTACATTTTCCAACAGAAGGGGAGAAACCAATCATTTCAGCCAGGAAGTCTCTACAATAGCTATTAAAGAAAATTCTGAAAAAAATATGCCGGAATTTGGTACCACAAGCCAATGGTCAAGGTGACAACATAAAAGAAGAAAATTAATTCGTAGTTGTATGACTACTAGTCGGGATCTATGCCTCTTCCTTGGGCTCATAACGTTTCATATATGATCTACTAGTCTCTAGCTTCCTATCGTTTACCTTCAGTTGGAGAATCTTGCTTTAATGTTGTACATTATTTTCTGCATTACAAGGAAGTTTGCTGTGTTGAGGTTATGACCAGAATTTAAATTTGATTGGTTCAAGCATGTTTATTTTTGTTTCATCTTTAAATAGGTGTCAGAGAAGCTCTCAATGCCCCATGTGTTGGCAACCTATTAGCCTGAAGGATCCAACCAGGTTTATACCAATTTTATATTTGTATCACTTTGTCATTTAAATTTAGAAGCAGATGTTAATACGAGGTGGTCCTGCAGCCAGGAGTTGCTCGAAGCTGTAGAACAAGAGAGAAGTTTTAGACTTAATCCAGCTAGAAACTCAACAATATTTCGCCATCCCACTCTTGGTGACTTTGAGTTACAGCATGTATGTACCCAGTATTCTGTTTAGCCTAATATCAGTAGATTATGGGTGCTAAAATCTGAGTGGGGACACATTTTTGTCTCAATGCAGCTGCCTGCTGGTGCTAATGATGCTGATCTTGAAGAGCGTATACTCCAACACCTGGCTGCAGCAGCTGCCATGGGACAAGCACGCCATGGTGCTAGAAGGGAAGGTCACAGAAATCGATCAGGAATTCATGGCCGTCCCCAGTTCTTGGTGTTTTCTTCCCATCCCAACTCTTCATCGACTTCTCCACCTCCCGGTGACAATCGGGAGGGTGAAGCATCCCCAAGAATCATGGTAGCTACTATATCACCACCTCCATCTGCAGGAGAAGAGTCCCCACAACTCAATGCTTCAGTATCTCCAACTGATCAGTCTTCTCCTTCAGTACCTCAATCCAGTTCTGCTTCTGCTAGTCAACTTGGATCTCCTTTGAGTGATAGGTATTCATTGTTCACTGAATTTACAGAGTTTGTTCCATTTTAATTGCAATGTGTCATTGCATGCAGCTACATAGAATTTATCGGTCATGTATTAATATTGTTGCCCCCCACCCTTCTTAGGAGATCTTCCAGTCAACCAGTGCCAAATAGTCAAGATAGAGCCGGACCATCAGAATTACAATCATTCTCGGATTCTCTTAAGTCTCGATTTAATGCTATGTCAATGAGGTTTGTAATTTATGCCTTTTTCCCAGTGTAATTTCTGATTATTTCATTCTTTTATGATTTAGCATCTCTACGTGTTTCCTTTTATTTTTAGATACAAAGATTCAATCACAAAGAGCACAAGGGGTTGGAGGGAGAAATTGTTCTCTCGCAACACTTCAATGTCTGATATTGGCTCTGAAGTTAGAAGAGAAGTCAATGCAGGGATAGCGACGGTATCACGCATGATGGAACGTCTTGAAACAAAAGATGCTAGAAAAAGTAGCAGTCCGGAGTCATCCAGTAGTGTAGGGGATAATAGTCCAGTTTCAGAATCAAATAACAGACAGATACCAGAGAATGGAGGAAACAATCCTTTGAGTGACACAAATAAAGAAGGGCCATGCCCTGCAGAATCCAGTTCAAGTTGAACATTCTCAGAATTGGCTTCACTCAAAGGGCCATCTTATAAGAGGTGAATATTGCAATTAATTGTTTCCCTCTTCCATATGTACAAGAAATGCCTGGAGTAAACTGATGTTTTAAAATTTTAGGTAAAAGAAAGAAAGAAAGAAACTTCAAAATATTAAAAAATGTCTTGAGTTTTAGTTTATGTACGACTAGTTAGAGTATATTTATATATTAGTCGGTGTATCATTTATAACTAGTAATAAATAGCTTATTTACTCATAAATTCATTGGAATCTTCATGCCCAAAGTTCATATTCTACTTTTTCCCACCTTGATAGAGAGGTTGTGGTAGGCTCCTTCACTTTTACTTGTGTCCTAATTTGGTAGCTGATTTGAAGGGAAAAACTTGTATATTGTATGAGTTTCTTAAGATTAGGTATAGGTTGGGCGATTATTGGAAATGGAGACAAGCTGTAGAGGTTCGGGTTCGGTCTCGAAGGGTCGTTGGAACTTGGTAGTATAGTATTTTGTGGTTTCTTCTGATGGAAGGGAAAAATTGTGCCAACTACCTGTGAGTTGAACCAATGCTGTCAATAGGTTTCACAGCAGAGAGGGGTCTTTTGCTTGTAGAATGGATGATTGTG

mRNA sequence

TGGAAATGCATTGGACGGGTTTACCAATAAGGATAGACGTGGGGCATTAGTACGAAAGCGAGTGGCGCAAGTAGTAAAGTCCTTAAAATTCCTCCACGCGTTAAAAACTTTAAACCCCCAAAAATCAGCCGATGACCGACCATAACCAAACTCAGCTCTCACCACCAGCTTTTTCCCAAGTCAAGACCGGAGCCGCCACACCCACCGTCAACTCCGCCTCAATTCTCCTCCTCCTTTACCTAGGGTTTCACTGATTTCAATCCAATCAACATCGCACTGCTCATCCTCGTTTCTCATGGAGTCTCCAACGATGGACGAAACTAAAAAATCTGAAGCGCATTTGACATCAGCTGCTGCTTTTGTCGAAGGTGGAATCCAGGATGCTTGTGATGACGCTTGCAGTATATGTCTAGAAAACTTCTGTGACAGTGATCCTTCAACGATGACCAGTTGCAAACATGAGTTTCATCTGCAGTGCGTTCTTGAATGTGGATTTCTCGGTGCGAATAGGAGGAATGCAATTTTGAAGGATTGTGCTAGGTGTCAGAGAAGCTCTCAATGCCCCATGTGTTGGCAACCTATTAGCCTGAAGGATCCAACCAGCCAGGAGTTGCTCGAAGCTGTAGAACAAGAGAGAAGTTTTAGACTTAATCCAGCTAGAAACTCAACAATATTTCGCCATCCCACTCTTGGTGACTTTGAGTTACAGCATCTGCCTGCTGGTGCTAATGATGCTGATCTTGAAGAGCGTATACTCCAACACCTGGCTGCAGCAGCTGCCATGGGACAAGCACGCCATGGTGCTAGAAGGGAAGGTCACAGAAATCGATCAGGAATTCATGGCCGTCCCCAGTTCTTGGTGTTTTCTTCCCATCCCAACTCTTCATCGACTTCTCCACCTCCCGGTGACAATCGGGAGGGTGAAGCATCCCCAAGAATCATGGTAGCTACTATATCACCACCTCCATCTGCAGGAGAAGAGTCCCCACAACTCAATGCTTCAGTATCTCCAACTGATCAGTCTTCTCCTTCAGTACCTCAATCCAGTTCTGCTTCTGCTAGTCAACTTGGATCTCCTTTGAGTGATAGCTACATAGAATTTATCGGTCATGTATTAATATTGTTGCCCCCCACCCTTCTTAGGAGATCTTCCAGTCAACCAGTGCCAAATAGTCAAGATAGAGCCGGACCATCAGAATTACAATCATTCTCGGATTCTCTTAAGTCTCGATTTAATGCTATGTCAATGAGATACAAAGATTCAATCACAAAGAGCACAAGGGGTTGGAGGGAGAAATTGTTCTCTCGCAACACTTCAATGTCTGATATTGGCTCTGAAGTTAGAAGAGAAGTCAATGCAGGGATAGCGACGGTATCACGCATGATGGAACGTCTTGAAACAAAAGATGCTAGAAAAAGTAGCAGTCCGGAGTCATCCAGTAGTGTAGGGGATAATAGTCCAGTTTCAGAATCAAATAACAGACAGATACCAGAGAATGGAGGAAACAATCCTTTGAGTGACACAAATAAAGAAGGGCCATGCCCTGCAGAATCCAGTTCAAGTTGAACATTCTCAGAATTGGCTTCACTCAAAGGGCCATCTTATAAGAGGTGAATATTGCAATTAATTGTTTCCCTCTTCCATATGTACAAGAAATGCCTGGAGTAAACTGATGTTTTAAAATTTTAGGTAAAAGAAAGAAAGAAAGAAACTTCAAAATATTAAAAAATGTCTTGAGTTTTAGTTTATGTACGACTAGTTAGAGTATATTTATATATTAGTCGGTGTATCATTTATAACTAGTAATAAATAGCTTATTTACTCATAAATTCATTGGAATCTTCATGCCCAAAGTTCATATTCTACTTTTTCCCACCTTGATAGAGAGGTTGTGGTAGGCTCCTTCACTTTTACTTGTGTCCTAATTTGGTAGCTGATTTGAAGGGAAAAACTTGTATATTGTATGAGTTTCTTAAGATTAGGTATAGGTTGGGCGATTATTGGAAATGGAGACAAGCTGTAGAGGTTCGGGTTCGGTCTCGAAGGGTCGTTGGAACTTGGTAGTATAGTATTTTGTGGTTTCTTCTGATGGAAGGGAAAAATTGTGCCAACTACCTGTGAGTTGAACCAATGCTGTCAATAGGTTTCACAGCAGAGAGGGGTCTTTTGCTTGTAGAATGGATGATTGTG

Coding sequence (CDS)

ATGGAGTCTCCAACGATGGACGAAACTAAAAAATCTGAAGCGCATTTGACATCAGCTGCTGCTTTTGTCGAAGGTGGAATCCAGGATGCTTGTGATGACGCTTGCAGTATATGTCTAGAAAACTTCTGTGACAGTGATCCTTCAACGATGACCAGTTGCAAACATGAGTTTCATCTGCAGTGCGTTCTTGAATGTGGATTTCTCGGTGCGAATAGGAGGAATGCAATTTTGAAGGATTGTGCTAGGTGTCAGAGAAGCTCTCAATGCCCCATGTGTTGGCAACCTATTAGCCTGAAGGATCCAACCAGCCAGGAGTTGCTCGAAGCTGTAGAACAAGAGAGAAGTTTTAGACTTAATCCAGCTAGAAACTCAACAATATTTCGCCATCCCACTCTTGGTGACTTTGAGTTACAGCATCTGCCTGCTGGTGCTAATGATGCTGATCTTGAAGAGCGTATACTCCAACACCTGGCTGCAGCAGCTGCCATGGGACAAGCACGCCATGGTGCTAGAAGGGAAGGTCACAGAAATCGATCAGGAATTCATGGCCGTCCCCAGTTCTTGGTGTTTTCTTCCCATCCCAACTCTTCATCGACTTCTCCACCTCCCGGTGACAATCGGGAGGGTGAAGCATCCCCAAGAATCATGGTAGCTACTATATCACCACCTCCATCTGCAGGAGAAGAGTCCCCACAACTCAATGCTTCAGTATCTCCAACTGATCAGTCTTCTCCTTCAGTACCTCAATCCAGTTCTGCTTCTGCTAGTCAACTTGGATCTCCTTTGAGTGATAGCTACATAGAATTTATCGGTCATGTATTAATATTGTTGCCCCCCACCCTTCTTAGGAGATCTTCCAGTCAACCAGTGCCAAATAGTCAAGATAGAGCCGGACCATCAGAATTACAATCATTCTCGGATTCTCTTAAGTCTCGATTTAATGCTATGTCAATGAGATACAAAGATTCAATCACAAAGAGCACAAGGGGTTGGAGGGAGAAATTGTTCTCTCGCAACACTTCAATGTCTGATATTGGCTCTGAAGTTAGAAGAGAAGTCAATGCAGGGATAGCGACGGTATCACGCATGATGGAACGTCTTGAAACAAAAGATGCTAGAAAAAGTAGCAGTCCGGAGTCATCCAGTAGTGTAGGGGATAATAGTCCAGTTTCAGAATCAAATAACAGACAGATACCAGAGAATGGAGGAAACAATCCTTTGAGTGACACAAATAAAGAAGGGCCATGCCCTGCAGAATCCAGTTCAAGTTGA

Protein sequence

MESPTMDETKKSEAHLTSAAAFVEGGIQDACDDACSICLENFCDSDPSTMTSCKHEFHLQCVLECGFLGANRRNAILKDCARCQRSSQCPMCWQPISLKDPTSQELLEAVEQERSFRLNPARNSTIFRHPTLGDFELQHLPAGANDADLEERILQHLAAAAAMGQARHGARREGHRNRSGIHGRPQFLVFSSHPNSSSTSPPPGDNREGEASPRIMVATISPPPSAGEESPQLNASVSPTDQSSPSVPQSSSASASQLGSPLSDSYIEFIGHVLILLPPTLLRRSSSQPVPNSQDRAGPSELQSFSDSLKSRFNAMSMRYKDSITKSTRGWREKLFSRNTSMSDIGSEVRREVNAGIATVSRMMERLETKDARKSSSPESSSSVGDNSPVSESNNRQIPENGGNNPLSDTNKEGPCPAESSSS

Homology

[Close]

BLAST of Lsi06G006010 vs. Swiss-Prot
Match: RHF2A_ARATH (E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana GN=RHF2A PE=2 SV=1)

HSP 1 Score: 399.4 bits (1025), Expect = 4.8e-110
Identity = 238/418 (56.94%), Postives = 283/418 (67.70%), Query Frame = 1


Query: 8   ETKKSEAHLTSAAAFVEGGIQDACDDACSICLENFCDSDPSTMTSCKHEFHLQCVLECGF 67
           ET  SE HLTSAAAFVEGGIQDACDDACSICLE+FC+SDPST+TSCKHE+HLQC+LE   
Sbjct: 6   ETTTSEGHLTSAAAFVEGGIQDACDDACSICLESFCESDPSTLTSCKHEYHLQCILEW-- 65

Query: 68  LGANRRNAILKDCARCQRSSQCPMCWQPISLKDPTSQELLEAVEQERSFRLNPARNSTIF 127
                          CQRSSQCPMCWQ ISLKDPTSQELLEAVEQER+FR NP RN+TIF
Sbjct: 66  ---------------CQRSSQCPMCWQSISLKDPTSQELLEAVEQERNFRFNPTRNATIF 125

Query: 128 RHPTLGDFELQHLPAGANDADLEERILQHLAAAAAMGQARHGARREGHRNRSGIHGRPQF 187
           RHPTLGDFELQHLP G ++A++EERI+QHLAAAAAMG+ARHG RREGHR+RS   G  QF
Sbjct: 126 RHPTLGDFELQHLPVGVDNAEIEERIIQHLAAAAAMGRARHGVRREGHRSRSSSQGHQQF 185

Query: 188 LVFSSHPNSSSTSPPPGDNREGEASPRIMVATIS--PPPSAGEESPQLNASVSPTDQSSP 247
           +VFSS PN+S  SPPP        S R    T+S  P  + GE S Q N     T   + 
Sbjct: 186 MVFSSQPNAS--SPPPHPPMPSSPSQRDESDTVSNLPHNALGEGSHQSN-----TQPPTS 245

Query: 248 SVPQSSSASASQLGSPLSDSYIEFIGHVLILLPPTLLRRSSSQPVPNSQDRAGPSELQSF 307
           S P+  S SAS   S                       R  +Q  P+ QDRAGPSELQSF
Sbjct: 246 SHPRQVSPSASDSNS-----------------------RPLNQSSPSEQDRAGPSELQSF 305

Query: 308 SDSLKSRFNAMSMRYKDSITKSTRGWREKLFSRNTSMSDIGSEVRREVNAGIATVSRMME 367
           S+SLKSR NA+S RYK+SI+K+TR W+++LFSRNTSM+D+GSEV+REV+AGIATVSRMME
Sbjct: 306 SESLKSRLNAVSTRYKESISKNTRNWKDRLFSRNTSMADLGSEVKREVSAGIATVSRMME 365

Query: 368 RLETKDARKSSSPESSSSVGDNSPVSESNNRQIPENGGNNPLSDTNKEGPCPAESSSS 424
           RLET++  + S+  S S V +N     +N       G  + +++   +  C   S SS
Sbjct: 366 RLETRENSRPST-ASVSDVSENHTPETNNEHNRAAAGDEHSVNERGVKETCATGSGSS 375

[Close]

BLAST of Lsi06G006010 vs. Swiss-Prot
Match: RHF1A_ARATH (E3 ubiquitin-protein ligase RHF1A OS=Arabidopsis thaliana GN=RHF1A PE=1 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.2e-17
Identity = 97/288 (33.68%), Postives = 137/288 (47.57%), Query Frame = 1


Query: 17  TSAAAFVEGGIQDACDDACSICLENFCDSDPSTMTSCKHEFHLQCVLECGFLGANRRNAI 76
           +S+A  V     +  DDACSICLE F   DPST+TSCKHE+HLQC++E            
Sbjct: 28  SSSALVVASDDDNNTDDACSICLEPFTLQDPSTVTSCKHEYHLQCIIEWS---------- 87

Query: 77  LKDCARCQRSSQCPMCWQPISLKDPTSQELLEAVEQERSFRL-NPARNSTIFRHPTLGDF 136
                  QRS +CP+CWQ   L+DP SQELL AVE+ER  +  N + +S I  H +  DF
Sbjct: 88  -------QRSKECPICWQLFVLRDPASQELLAAVEKERLLKTRNISSSSPISIHHSHDDF 147

Query: 137 ELQHLPAGANDADLEERILQHLAAAAAMGQARHGARREGHRNRSGIHG------RPQFLV 196
             +     +  +  +E+ L+HL  AA         RR+G  + S +         P  LV
Sbjct: 148 HSEE--EESQFSSFDEQFLRHLTEAAHRRCLLR--RRDGQISSSLVSSSDPTTIHPTDLV 207

Query: 197 ------FSSHPNSSSTSPPPGDNREGEASPRIMVATISPPPSAGEESPQLNASVSPTDQS 256
                   SH    +++P P     G  +P   V+  S  P+      +++   SP+  S
Sbjct: 208 NLYRLSAISHVEHQNSNPCPS---PGSMTPS-PVSGHSSIPADSNNGSRISPGPSPSRSS 267

Query: 257 -SPSVPQSSS---ASASQLGSPLSDSYIEFIGHVLILLPPTLLRRSSS 288
            SP  P++SS   A  S+L +  S  Y E I      L   LL R++S
Sbjct: 268 QSPKSPEASSLPEAIKSKLAA-ASAKYKESISKSKQGLKEKLLARNNS 289

[Close]

BLAST of Lsi06G006010 vs. TrEMBL
Match: A0A0A0M0B5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G629730 PE=4 SV=1)

HSP 1 Score: 654.1 bits (1686), Expect = 1.2e-184
Identity = 360/425 (84.71%), Postives = 372/425 (87.53%), Query Frame = 1


Query: 1   MESPTMDETKKSEAHLTSAAAFVEGGIQDACDDACSICLENFCDSDPSTMTSCKHEFHLQ 60
           MESPTMDETKKSEAHLTSAAAFVEGGIQDACDDACSICLENFCDSDPSTMTSCKHEFHLQ
Sbjct: 1   MESPTMDETKKSEAHLTSAAAFVEGGIQDACDDACSICLENFCDSDPSTMTSCKHEFHLQ 60

Query: 61  CVLECGFLGANRRNAILKDCARCQRSSQCPMCWQPISLKDPTSQELLEAVEQERSFRLNP 120
           CVLE                  CQRSSQCPMCWQ ISLKDPTSQELLEAVEQERSFRLNP
Sbjct: 61  CVLEW-----------------CQRSSQCPMCWQSISLKDPTSQELLEAVEQERSFRLNP 120

Query: 121 ARNSTIFRHPTLGDFELQHLPAGANDADLEERILQHLAAAAAMGQARHGARREGHRNRSG 180
           ARNSTIFRHPTLGDFELQHLPAGANDADLEERILQHLAAAAAMGQARH ARRE HRNRSG
Sbjct: 121 ARNSTIFRHPTLGDFELQHLPAGANDADLEERILQHLAAAAAMGQARHSARRESHRNRSG 180

Query: 181 IHGRPQFLVFSSHPNSSSTSPPPGDNREGEASPRIMVATISPPPSAGEESPQLNASVSP- 240
           IHGRPQFLVFSSHPNSSSTSP  GD+REGEA+PRIMVA+ISPPP AGEE+PQ NASVSP 
Sbjct: 181 IHGRPQFLVFSSHPNSSSTSPSSGDDREGEAAPRIMVASISPPPPAGEEAPQSNASVSPV 240

Query: 241 -TDQSSPSVPQSSSASASQLGSPLSDSYIEFIGHVLILLPPTLLRRSSSQPVPNSQDRAG 300
            TDQSSPS PQSSSASASQLGSP S+                  RRSSSQPVPN+QDRAG
Sbjct: 241 QTDQSSPSAPQSSSASASQLGSPSSE------------------RRSSSQPVPNNQDRAG 300

Query: 301 PSELQSFSDSLKSRFNAMSMRYKDSITKSTRGWREKLFSRNTSMSDIGSEVRREVNAGIA 360
           PSELQSFSDSLKSRFNAMSMRYKDSITKST+GW+EKLFSRNTSMSDIGSEVRREVNAGIA
Sbjct: 301 PSELQSFSDSLKSRFNAMSMRYKDSITKSTKGWKEKLFSRNTSMSDIGSEVRREVNAGIA 360

Query: 361 TVSRMMERLETKDARKSSSPESSSSVGDNSPVSESNNRQIPENGGNNPLSDTNKEGPCPA 420
           TVSRMMERLET+DARKSSSPE SSSVG NSPVSESNNR +PENGGN+P +DTNKEGP  A
Sbjct: 361 TVSRMMERLETRDARKSSSPE-SSSVGGNSPVSESNNRSMPENGGNSPSTDTNKEGPRSA 389

Query: 421 ESSSS 424
           ESSSS
Sbjct: 421 ESSSS 389

[Close]

BLAST of Lsi06G006010 vs. TrEMBL
Match: A0A067E1G9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g016591mg PE=4 SV=1)

HSP 1 Score: 462.2 bits (1188), Expect = 6.7e-127
Identity = 262/423 (61.94%), Postives = 316/423 (74.70%), Query Frame = 1


Query: 6   MDETKKSE-AHLTSAAAFVEGGIQDACDDACSICLENFCDSDPSTMTSCKHEFHLQCVLE 65
           M+E K+S+ AHLTSAAAFVEGGIQDACDDACSICLE+F +SDPST+TSCKHEFHLQC+LE
Sbjct: 1   MEENKQSDDAHLTSAAAFVEGGIQDACDDACSICLEDFSESDPSTLTSCKHEFHLQCILE 60

Query: 66  CGFLGANRRNAILKDCARCQRSSQCPMCWQPISLKDPTSQELLEAVEQERSFRLNPARNS 125
                             CQRSSQCPMCWQPISLKDPTSQELLEAVE+ERSFRLNP+RN+
Sbjct: 61  W-----------------CQRSSQCPMCWQPISLKDPTSQELLEAVERERSFRLNPSRNA 120

Query: 126 TIFRHPTLGDFELQHLPAGANDADLEERILQHLAAAAAMGQARHGARREGHRNRSGIHGR 185
           TIFRHPTLGDFELQHLP GANDA+LEERI+QHLAAAAAMG+ARH ARRE HRNR+    R
Sbjct: 121 TIFRHPTLGDFELQHLPVGANDAELEERIIQHLAAAAAMGRARHIARRESHRNRASSQAR 180

Query: 186 PQFLVFSSHPNSSSTSPPPGD--NREGEASPRIMVATISPPPSAGEESPQLNASV--SPT 245
           PQFLVFS+HPN+++  P      + EGEASP   VAT S P + GEES Q +  +  +  
Sbjct: 181 PQFLVFSTHPNAANDDPVSSSPTHLEGEASPITTVATPSSPATGGEESTQQSTHLLSAQA 240

Query: 246 DQSSPSVPQSSSASASQLGSPLSDSYIEFIGHVLILLPPTLLRRSSSQPVPNSQDRAGPS 305
           D  S S   SS+ ++ Q+G+ L++                  RRS +QP PNSQDRAGPS
Sbjct: 241 DHVSASASGSSAFASGQVGNTLNN------------------RRSPNQPSPNSQDRAGPS 300

Query: 306 ELQSFSDSLKSRFNAMSMRYKDSITKSTRGWREKLFSRNTSMSDIGSEVRREVNAGIATV 365
           + QSFS+SLKSRFNA+SMRYK+SI+KSTRGW+E+ FSRN +M+D+G+EVRREVNAGI+TV
Sbjct: 301 DFQSFSESLKSRFNAVSMRYKESISKSTRGWKERFFSRNNTMADLGTEVRREVNAGISTV 360

Query: 366 SRMMERLETKDARKSSSPESSSSVGDNSPVSESNNRQIPENGGNNPLSDTNKEGPCPAES 424
           SRMMERLET+D+  +++   SSS   N+ V E NN+Q  E    NP++DTN +  C A S
Sbjct: 361 SRMMERLETRDSNSNNTTSVSSS--SNNSVPELNNQQKSETADTNPMNDTNVQASCAASS 386

[Close]

BLAST of Lsi06G006010 vs. TrEMBL
Match: M5WB81_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006952mg PE=4 SV=1)

HSP 1 Score: 461.8 bits (1187), Expect = 8.7e-127
Identity = 267/427 (62.53%), Postives = 313/427 (73.30%), Query Frame = 1


Query: 1   MESPTMDETKKSEAHLTSAAAFVEGGIQDACDDACSICLENFCDSDPSTMTSCKHEFHLQ 60
           ME P M+ET KSEAHLTSAAAFVEGGIQ+ACDDACSICLE FCDSDPST+T CKHEFHLQ
Sbjct: 1   MEVPGMEETNKSEAHLTSAAAFVEGGIQEACDDACSICLEAFCDSDPSTLTGCKHEFHLQ 60

Query: 61  CVLECGFLGANRRNAILKDCARCQRSSQCPMCWQPISLKDPTSQELLEAVEQERSFRLNP 120
           C+LE                  CQRSSQCPMCWQPISLKDPTSQELLE VE+ERS R NP
Sbjct: 61  CILEW-----------------CQRSSQCPMCWQPISLKDPTSQELLEGVERERSIRSNP 120

Query: 121 ARNSTIFRHPTLGDFELQHLPAGANDADLEERILQHLAAAAAMGQARHGARREGHRNRSG 180
            RN+TIF HPTLGDFELQHLP G NDA+LEERI+QHLAAAAAMG+ARH ARREG RNRS 
Sbjct: 121 PRNTTIFHHPTLGDFELQHLPVGVNDAELEERIIQHLAAAAAMGRARHIARREGQRNRSS 180

Query: 181 IHGRPQFLVFSSHPNS-SSTSPPPGDNREGEASPRIMVATISPPPSAGEESPQLNASVSP 240
             GRPQFLVFS+HPN+  + S  P    EGE +P I V   SPP + GEES Q+   V P
Sbjct: 181 TQGRPQFLVFSTHPNAHPAASSSPDQMGEGEPAPSISVPFPSPPLNTGEESYQVTTPV-P 240

Query: 241 TDQSSP---SVPQSSSASASQLGSPLSDSYIEFIGHVLILLPPTLLRRSSSQPVPNSQDR 300
           + QS P   S   +S  + +Q GS +S+S                   S SQ  P++QDR
Sbjct: 241 SSQSGPVSASAAGTSVPAPNQHGSSISNS------------------GSPSQSSPSTQDR 300

Query: 301 AGPSELQSFSDSLKSRFNAMSMRYKDSITKSTRGWREKLFSRNTSMSDIGSEVRREVNAG 360
           AGPS+LQSFS+SLK+RFNA+SMRYK+SI+KSTRGW+E+LFSRN +M+D+GSEV+REVNA 
Sbjct: 301 AGPSDLQSFSESLKTRFNAVSMRYKESISKSTRGWKERLFSRNAAMADLGSEVKREVNAS 360

Query: 361 IATVSRMMERLETKDARKSSSPESSSSVGDNSPVSESNNRQIPENGGNNPLSDTNKEGPC 420
            ATVSRMMERLET+D  + + P  S+S+  +S V +S+N+QI ENGG N L+D NK   C
Sbjct: 361 FATVSRMMERLETRDNSRINDPCVSNSL--DSSVPQSDNQQISENGGENSLNDHNKPAVC 389

Query: 421 PAESSSS 424
            A SSS+
Sbjct: 421 AAGSSSN 389

[Close]

BLAST of Lsi06G006010 vs. TrEMBL
Match: V4SEP8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030283mg PE=4 SV=1)

HSP 1 Score: 461.5 bits (1186), Expect = 1.1e-126
Identity = 261/423 (61.70%), Postives = 317/423 (74.94%), Query Frame = 1


Query: 6   MDETKKSE-AHLTSAAAFVEGGIQDACDDACSICLENFCDSDPSTMTSCKHEFHLQCVLE 65
           M+E K+S+ AHLTSAAAFVEGGIQDACDDACSICLE+F +SDPST+TSCKHEFHLQC+LE
Sbjct: 1   MEENKQSDDAHLTSAAAFVEGGIQDACDDACSICLEDFSESDPSTLTSCKHEFHLQCILE 60

Query: 66  CGFLGANRRNAILKDCARCQRSSQCPMCWQPISLKDPTSQELLEAVEQERSFRLNPARNS 125
                             CQRSSQCPMCWQPISLKDPTSQELLEAVE+ERSFRLNP+RN+
Sbjct: 61  W-----------------CQRSSQCPMCWQPISLKDPTSQELLEAVERERSFRLNPSRNA 120

Query: 126 TIFRHPTLGDFELQHLPAGANDADLEERILQHLAAAAAMGQARHGARREGHRNRSGIHGR 185
           TIFRHPTLGDFELQHLP GANDA+LEERI+QHLAAAAAMG+ARH ARRE HR+R+    R
Sbjct: 121 TIFRHPTLGDFELQHLPVGANDAELEERIIQHLAAAAAMGRARHIARRESHRSRASSQAR 180

Query: 186 PQFLVFSSHPNSSSTSPPPGD--NREGEASPRIMVATISPPPSAGEESPQLNASV--SPT 245
           PQFLVFS+HPN+++  P      + EGEASP   VAT S P + GEES Q +  +  +  
Sbjct: 181 PQFLVFSTHPNAANDDPVSSSPTHLEGEASPITTVATPSSPATGGEESTQQSTHLLSAQA 240

Query: 246 DQSSPSVPQSSSASASQLGSPLSDSYIEFIGHVLILLPPTLLRRSSSQPVPNSQDRAGPS 305
           D +S S   SS+ ++ Q+G+ L++                  RRS +QP PNSQDRAGPS
Sbjct: 241 DHASASASGSSAFASGQVGNTLNN------------------RRSPNQPSPNSQDRAGPS 300

Query: 306 ELQSFSDSLKSRFNAMSMRYKDSITKSTRGWREKLFSRNTSMSDIGSEVRREVNAGIATV 365
           + QSFS+SLKSRFNA+SMRYK+SI+KSTRGW+E+ FSRN +M+D+G+EVRREVNAGI+TV
Sbjct: 301 DFQSFSESLKSRFNAVSMRYKESISKSTRGWKERFFSRNNTMADLGTEVRREVNAGISTV 360

Query: 366 SRMMERLETKDARKSSSPESSSSVGDNSPVSESNNRQIPENGGNNPLSDTNKEGPCPAES 424
           SRMMERLET+D+  +++   SSS   N+ V E NN+Q  E    NP++DTN +  C A S
Sbjct: 361 SRMMERLETRDSNSNNTTSVSSS--SNNSVPELNNQQKSETADTNPMNDTNVQASCAASS 386

[Close]

BLAST of Lsi06G006010 vs. TrEMBL
Match: A0A061GV15_THECC (RING-H2 group F2A isoform 1 OS=Theobroma cacao GN=TCM_041186 PE=4 SV=1)

HSP 1 Score: 458.8 bits (1179), Expect = 7.4e-126
Identity = 274/423 (64.78%), Postives = 310/423 (73.29%), Query Frame = 1


Query: 8   ETKKSEAHLTSAAAFVEGGIQDACDDACSICLENFCDSDPSTMTSCKHEFHLQCVLECGF 67
           E  KSEAHLTSAAAFVEGGIQDACDDACSICLE F +SDPST+TSCKHEFHLQC+LE   
Sbjct: 5   EDTKSEAHLTSAAAFVEGGIQDACDDACSICLEAFYESDPSTVTSCKHEFHLQCILEW-- 64

Query: 68  LGANRRNAILKDCARCQRSSQCPMCWQPISLKDPTSQELLEAVEQERSFRLNPARNSTIF 127
                          CQRSSQCPMCWQPISLKDPTSQELLEAVE+ERSFRLNPARN+TIF
Sbjct: 65  ---------------CQRSSQCPMCWQPISLKDPTSQELLEAVERERSFRLNPARNATIF 124

Query: 128 RHPTLGDFELQHLPAGANDADLEERILQHLAAAAAMGQARHGARREGHRNRSGIHGRPQF 187
            HPTLGDFELQHLP GANDA+LEERI+QHLAAAAAMG+ARH ARREG R+RS   GRPQF
Sbjct: 125 HHPTLGDFELQHLPVGANDAELEERIIQHLAAAAAMGRARHIARREGLRSRSSAQGRPQF 184

Query: 188 LVFSSHPNSSSTSPPPGD--NREGEASPRIMVAT-ISPPPSAGEESPQLNASVSP----- 247
           LVFS+HPN+ ST P       REGE +P I V T  SP  + GEES   +AS++P     
Sbjct: 185 LVFSTHPNAPSTGPISSSPTQREGEPAPSITVGTPSSPARTVGEES---SASITPLPSAQ 244

Query: 248 TDQSSPSVPQSSSASASQLGSPLSDSYIEFIGHVLILLPPTLLRRSSSQPVPNSQDRAGP 307
            DQ S S   SS    +  G+ L++                  RRS +Q  PNSQDRAGP
Sbjct: 245 ADQQSASASGSSVLLVNDQGNSLNN------------------RRSPNQCSPNSQDRAGP 304

Query: 308 SELQSFSDSLKSRFNAMSMRYKDSITKSTRGWREKLFSRNTSMSDIGSEVRREVNAGIAT 367
           SE QSFS+SLKSRFNA+SMRYK+SI+KSTRGW+E+ FSRNTSM+DIGSEVRREVNAGIAT
Sbjct: 305 SEFQSFSESLKSRFNAVSMRYKESISKSTRGWKERFFSRNTSMADIGSEVRREVNAGIAT 364

Query: 368 VSRMMERLETKDARKSSSPESSSSVGDNSPVSESNNRQIPENGGNNPLSDTNKEGPCPAE 423
           VSRMMERLET+D R S+S   SSS+ D S  +ES+N  I   GG  PL+DT+ +  C A 
Sbjct: 365 VSRMMERLETRDNRTSTS-TVSSSLEDRSD-TESDNHPISNAGGETPLTDTSAQASCAAS 387

[Close]

BLAST of Lsi06G006010 vs. TAIR10
Match: AT5G22000.2 (AT5G22000.2 RING-H2 group F2A)

HSP 1 Score: 397.9 bits (1021), Expect = 7.8e-111
Identity = 237/417 (56.83%), Postives = 282/417 (67.63%), Query Frame = 1


Query: 9   TKKSEAHLTSAAAFVEGGIQDACDDACSICLENFCDSDPSTMTSCKHEFHLQCVLECGFL 68
           T  SE HLTSAAAFVEGGIQDACDDACSICLE+FC+SDPST+TSCKHE+HLQC+LE    
Sbjct: 7   TTTSEGHLTSAAAFVEGGIQDACDDACSICLESFCESDPSTLTSCKHEYHLQCILEW--- 66

Query: 69  GANRRNAILKDCARCQRSSQCPMCWQPISLKDPTSQELLEAVEQERSFRLNPARNSTIFR 128
                         CQRSSQCPMCWQ ISLKDPTSQELLEAVEQER+FR NP RN+TIFR
Sbjct: 67  --------------CQRSSQCPMCWQSISLKDPTSQELLEAVEQERNFRFNPTRNATIFR 126

Query: 129 HPTLGDFELQHLPAGANDADLEERILQHLAAAAAMGQARHGARREGHRNRSGIHGRPQFL 188
           HPTLGDFELQHLP G ++A++EERI+QHLAAAAAMG+ARHG RREGHR+RS   G  QF+
Sbjct: 127 HPTLGDFELQHLPVGVDNAEIEERIIQHLAAAAAMGRARHGVRREGHRSRSSSQGHQQFM 186

Query: 189 VFSSHPNSSSTSPPPGDNREGEASPRIMVATIS--PPPSAGEESPQLNASVSPTDQSSPS 248
           VFSS PN+S  SPPP        S R    T+S  P  + GE S Q N     T   + S
Sbjct: 187 VFSSQPNAS--SPPPHPPMPSSPSQRDESDTVSNLPHNALGEGSHQSN-----TQPPTSS 246

Query: 249 VPQSSSASASQLGSPLSDSYIEFIGHVLILLPPTLLRRSSSQPVPNSQDRAGPSELQSFS 308
            P+  S SAS   S                       R  +Q  P+ QDRAGPSELQSFS
Sbjct: 247 HPRQVSPSASDSNS-----------------------RPLNQSSPSEQDRAGPSELQSFS 306

Query: 309 DSLKSRFNAMSMRYKDSITKSTRGWREKLFSRNTSMSDIGSEVRREVNAGIATVSRMMER 368
           +SLKSR NA+S RYK+SI+K+TR W+++LFSRNTSM+D+GSEV+REV+AGIATVSRMMER
Sbjct: 307 ESLKSRLNAVSTRYKESISKNTRNWKDRLFSRNTSMADLGSEVKREVSAGIATVSRMMER 366

Query: 369 LETKDARKSSSPESSSSVGDNSPVSESNNRQIPENGGNNPLSDTNKEGPCPAESSSS 424
           LET++  + S+  S S V +N     +N       G  + +++   +  C   S SS
Sbjct: 367 LETRENSRPST-ASVSDVSENHTPETNNEHNRAAAGDEHSVNERGVKETCATGSGSS 375

[Close]

BLAST of Lsi06G006010 vs. TAIR10
Match: AT4G14220.1 (AT4G14220.1 RING-H2 group F1A)

HSP 1 Score: 92.4 bits (228), Expect = 7.0e-19
Identity = 97/288 (33.68%), Postives = 137/288 (47.57%), Query Frame = 1


Query: 17  TSAAAFVEGGIQDACDDACSICLENFCDSDPSTMTSCKHEFHLQCVLECGFLGANRRNAI 76
           +S+A  V     +  DDACSICLE F   DPST+TSCKHE+HLQC++E            
Sbjct: 28  SSSALVVASDDDNNTDDACSICLEPFTLQDPSTVTSCKHEYHLQCIIEWS---------- 87

Query: 77  LKDCARCQRSSQCPMCWQPISLKDPTSQELLEAVEQERSFRL-NPARNSTIFRHPTLGDF 136
                  QRS +CP+CWQ   L+DP SQELL AVE+ER  +  N + +S I  H +  DF
Sbjct: 88  -------QRSKECPICWQLFVLRDPASQELLAAVEKERLLKTRNISSSSPISIHHSHDDF 147

Query: 137 ELQHLPAGANDADLEERILQHLAAAAAMGQARHGARREGHRNRSGIHG------RPQFLV 196
             +     +  +  +E+ L+HL  AA         RR+G  + S +         P  LV
Sbjct: 148 HSEE--EESQFSSFDEQFLRHLTEAAHRRCLLR--RRDGQISSSLVSSSDPTTIHPTDLV 207

Query: 197 ------FSSHPNSSSTSPPPGDNREGEASPRIMVATISPPPSAGEESPQLNASVSPTDQS 256
                   SH    +++P P     G  +P   V+  S  P+      +++   SP+  S
Sbjct: 208 NLYRLSAISHVEHQNSNPCPS---PGSMTPS-PVSGHSSIPADSNNGSRISPGPSPSRSS 267

Query: 257 -SPSVPQSSS---ASASQLGSPLSDSYIEFIGHVLILLPPTLLRRSSS 288
            SP  P++SS   A  S+L +  S  Y E I      L   LL R++S
Sbjct: 268 QSPKSPEASSLPEAIKSKLAA-ASAKYKESISKSKQGLKEKLLARNNS 289

[Close]

BLAST of Lsi06G006010 vs. NCBI nr
Match: gi|659098843|ref|XP_008450319.1| (PREDICTED: E3 ubiquitin-protein ligase RHF2A-like isoform X3 [Cucumis melo])

HSP 1 Score: 660.2 bits (1702), Expect = 2.4e-186
Identity = 363/425 (85.41%), Postives = 375/425 (88.24%), Query Frame = 1


Query: 1   MESPTMDETKKSEAHLTSAAAFVEGGIQDACDDACSICLENFCDSDPSTMTSCKHEFHLQ 60
           MESPTMDETKKSEAHLTSAAAFVEGGIQDACDDACSICLENFCDSDPSTMTSCKHEFHLQ
Sbjct: 1   MESPTMDETKKSEAHLTSAAAFVEGGIQDACDDACSICLENFCDSDPSTMTSCKHEFHLQ 60

Query: 61  CVLECGFLGANRRNAILKDCARCQRSSQCPMCWQPISLKDPTSQELLEAVEQERSFRLNP 120
           CVLE                  CQRSSQCPMCWQPISLKDPTSQELLEAVEQERSFRLNP
Sbjct: 61  CVLEW-----------------CQRSSQCPMCWQPISLKDPTSQELLEAVEQERSFRLNP 120

Query: 121 ARNSTIFRHPTLGDFELQHLPAGANDADLEERILQHLAAAAAMGQARHGARREGHRNRSG 180
           ARNSTIFRHPTLGDFELQHLPAGA+DADLEERILQHLAAAAAMGQARH ARRE HRNRSG
Sbjct: 121 ARNSTIFRHPTLGDFELQHLPAGASDADLEERILQHLAAAAAMGQARHSARRESHRNRSG 180

Query: 181 IHGRPQFLVFSSHPNSSSTSPPPGDNREGEASPRIMVATISPPPSAGEESPQLNASVSP- 240
           IHGRPQFLVFSSHPNSSSTSPPPGD+REGEA+PRIMVA+ISPP  AGEE+PQ NASVSP 
Sbjct: 181 IHGRPQFLVFSSHPNSSSTSPPPGDDREGEAAPRIMVASISPPSPAGEEAPQSNASVSPV 240

Query: 241 -TDQSSPSVPQSSSASASQLGSPLSDSYIEFIGHVLILLPPTLLRRSSSQPVPNSQDRAG 300
            TDQSSPS PQSSSASASQLGSP S+                  RRSSSQPVPNSQDRA 
Sbjct: 241 QTDQSSPSAPQSSSASASQLGSPPSE------------------RRSSSQPVPNSQDRAE 300

Query: 301 PSELQSFSDSLKSRFNAMSMRYKDSITKSTRGWREKLFSRNTSMSDIGSEVRREVNAGIA 360
           PSELQSFSDSLKSRFNAMSMRYKDSITKSTRGWREKLFSRNTSMSDIGSEVRREVNAGIA
Sbjct: 301 PSELQSFSDSLKSRFNAMSMRYKDSITKSTRGWREKLFSRNTSMSDIGSEVRREVNAGIA 360

Query: 361 TVSRMMERLETKDARKSSSPESSSSVGDNSPVSESNNRQIPENGGNNPLSDTNKEGPCPA 420
           TVSRMMERLET+DARKSSSPE SSSVGD++PVSESNNR +PENGGN+ L+DTNKEGP PA
Sbjct: 361 TVSRMMERLETRDARKSSSPE-SSSVGDSNPVSESNNRSMPENGGNSSLTDTNKEGPRPA 389

Query: 421 ESSSS 424
           ESSSS
Sbjct: 421 ESSSS 389

[Close]

BLAST of Lsi06G006010 vs. NCBI nr
Match: gi|659098841|ref|XP_008450318.1| (PREDICTED: E3 ubiquitin-protein ligase RHF2A-like isoform X2 [Cucumis melo])

HSP 1 Score: 657.1 bits (1694), Expect = 2.0e-185
Identity = 361/425 (84.94%), Postives = 374/425 (88.00%), Query Frame = 1


Query: 1   MESPTMDETKKSEAHLTSAAAFVEGGIQDACDDACSICLENFCDSDPSTMTSCKHEFHLQ 60
           + SPTMDETKKSEAHLTSAAAFVEGGIQDACDDACSICLENFCDSDPSTMTSCKHEFHLQ
Sbjct: 4   LNSPTMDETKKSEAHLTSAAAFVEGGIQDACDDACSICLENFCDSDPSTMTSCKHEFHLQ 63

Query: 61  CVLECGFLGANRRNAILKDCARCQRSSQCPMCWQPISLKDPTSQELLEAVEQERSFRLNP 120
           CVLE                  CQRSSQCPMCWQPISLKDPTSQELLEAVEQERSFRLNP
Sbjct: 64  CVLEW-----------------CQRSSQCPMCWQPISLKDPTSQELLEAVEQERSFRLNP 123

Query: 121 ARNSTIFRHPTLGDFELQHLPAGANDADLEERILQHLAAAAAMGQARHGARREGHRNRSG 180
           ARNSTIFRHPTLGDFELQHLPAGA+DADLEERILQHLAAAAAMGQARH ARRE HRNRSG
Sbjct: 124 ARNSTIFRHPTLGDFELQHLPAGASDADLEERILQHLAAAAAMGQARHSARRESHRNRSG 183

Query: 181 IHGRPQFLVFSSHPNSSSTSPPPGDNREGEASPRIMVATISPPPSAGEESPQLNASVSP- 240
           IHGRPQFLVFSSHPNSSSTSPPPGD+REGEA+PRIMVA+ISPP  AGEE+PQ NASVSP 
Sbjct: 184 IHGRPQFLVFSSHPNSSSTSPPPGDDREGEAAPRIMVASISPPSPAGEEAPQSNASVSPV 243

Query: 241 -TDQSSPSVPQSSSASASQLGSPLSDSYIEFIGHVLILLPPTLLRRSSSQPVPNSQDRAG 300
            TDQSSPS PQSSSASASQLGSP S+                  RRSSSQPVPNSQDRA 
Sbjct: 244 QTDQSSPSAPQSSSASASQLGSPPSE------------------RRSSSQPVPNSQDRAE 303

Query: 301 PSELQSFSDSLKSRFNAMSMRYKDSITKSTRGWREKLFSRNTSMSDIGSEVRREVNAGIA 360
           PSELQSFSDSLKSRFNAMSMRYKDSITKSTRGWREKLFSRNTSMSDIGSEVRREVNAGIA
Sbjct: 304 PSELQSFSDSLKSRFNAMSMRYKDSITKSTRGWREKLFSRNTSMSDIGSEVRREVNAGIA 363

Query: 361 TVSRMMERLETKDARKSSSPESSSSVGDNSPVSESNNRQIPENGGNNPLSDTNKEGPCPA 420
           TVSRMMERLET+DARKSSSPE SSSVGD++PVSESNNR +PENGGN+ L+DTNKEGP PA
Sbjct: 364 TVSRMMERLETRDARKSSSPE-SSSVGDSNPVSESNNRSMPENGGNSSLTDTNKEGPRPA 392

Query: 421 ESSSS 424
           ESSSS
Sbjct: 424 ESSSS 392

[Close]

BLAST of Lsi06G006010 vs. NCBI nr
Match: gi|659098839|ref|XP_008450317.1| (PREDICTED: E3 ubiquitin-protein ligase RHF2A-like isoform X1 [Cucumis melo])

HSP 1 Score: 656.4 bits (1692), Expect = 3.5e-185
Identity = 361/423 (85.34%), Postives = 373/423 (88.18%), Query Frame = 1


Query: 3   SPTMDETKKSEAHLTSAAAFVEGGIQDACDDACSICLENFCDSDPSTMTSCKHEFHLQCV 62
           SPTMDETKKSEAHLTSAAAFVEGGIQDACDDACSICLENFCDSDPSTMTSCKHEFHLQCV
Sbjct: 11  SPTMDETKKSEAHLTSAAAFVEGGIQDACDDACSICLENFCDSDPSTMTSCKHEFHLQCV 70

Query: 63  LECGFLGANRRNAILKDCARCQRSSQCPMCWQPISLKDPTSQELLEAVEQERSFRLNPAR 122
           LE                  CQRSSQCPMCWQPISLKDPTSQELLEAVEQERSFRLNPAR
Sbjct: 71  LEW-----------------CQRSSQCPMCWQPISLKDPTSQELLEAVEQERSFRLNPAR 130

Query: 123 NSTIFRHPTLGDFELQHLPAGANDADLEERILQHLAAAAAMGQARHGARREGHRNRSGIH 182
           NSTIFRHPTLGDFELQHLPAGA+DADLEERILQHLAAAAAMGQARH ARRE HRNRSGIH
Sbjct: 131 NSTIFRHPTLGDFELQHLPAGASDADLEERILQHLAAAAAMGQARHSARRESHRNRSGIH 190

Query: 183 GRPQFLVFSSHPNSSSTSPPPGDNREGEASPRIMVATISPPPSAGEESPQLNASVSP--T 242
           GRPQFLVFSSHPNSSSTSPPPGD+REGEA+PRIMVA+ISPP  AGEE+PQ NASVSP  T
Sbjct: 191 GRPQFLVFSSHPNSSSTSPPPGDDREGEAAPRIMVASISPPSPAGEEAPQSNASVSPVQT 250

Query: 243 DQSSPSVPQSSSASASQLGSPLSDSYIEFIGHVLILLPPTLLRRSSSQPVPNSQDRAGPS 302
           DQSSPS PQSSSASASQLGSP S+                  RRSSSQPVPNSQDRA PS
Sbjct: 251 DQSSPSAPQSSSASASQLGSPPSE------------------RRSSSQPVPNSQDRAEPS 310

Query: 303 ELQSFSDSLKSRFNAMSMRYKDSITKSTRGWREKLFSRNTSMSDIGSEVRREVNAGIATV 362
           ELQSFSDSLKSRFNAMSMRYKDSITKSTRGWREKLFSRNTSMSDIGSEVRREVNAGIATV
Sbjct: 311 ELQSFSDSLKSRFNAMSMRYKDSITKSTRGWREKLFSRNTSMSDIGSEVRREVNAGIATV 370

Query: 363 SRMMERLETKDARKSSSPESSSSVGDNSPVSESNNRQIPENGGNNPLSDTNKEGPCPAES 422
           SRMMERLET+DARKSSSPE SSSVGD++PVSESNNR +PENGGN+ L+DTNKEGP PAES
Sbjct: 371 SRMMERLETRDARKSSSPE-SSSVGDSNPVSESNNRSMPENGGNSSLTDTNKEGPRPAES 397

Query: 423 SSS 424
           SSS
Sbjct: 431 SSS 397

[Close]

BLAST of Lsi06G006010 vs. NCBI nr
Match: gi|449442598|ref|XP_004139068.1| (PREDICTED: E3 ubiquitin-protein ligase RHF2A-like isoform X2 [Cucumis sativus])

HSP 1 Score: 654.1 bits (1686), Expect = 1.7e-184
Identity = 360/425 (84.71%), Postives = 372/425 (87.53%), Query Frame = 1


Query: 1   MESPTMDETKKSEAHLTSAAAFVEGGIQDACDDACSICLENFCDSDPSTMTSCKHEFHLQ 60
           MESPTMDETKKSEAHLTSAAAFVEGGIQDACDDACSICLENFCDSDPSTMTSCKHEFHLQ
Sbjct: 1   MESPTMDETKKSEAHLTSAAAFVEGGIQDACDDACSICLENFCDSDPSTMTSCKHEFHLQ 60

Query: 61  CVLECGFLGANRRNAILKDCARCQRSSQCPMCWQPISLKDPTSQELLEAVEQERSFRLNP 120
           CVLE                  CQRSSQCPMCWQ ISLKDPTSQELLEAVEQERSFRLNP
Sbjct: 61  CVLEW-----------------CQRSSQCPMCWQSISLKDPTSQELLEAVEQERSFRLNP 120

Query: 121 ARNSTIFRHPTLGDFELQHLPAGANDADLEERILQHLAAAAAMGQARHGARREGHRNRSG 180
           ARNSTIFRHPTLGDFELQHLPAGANDADLEERILQHLAAAAAMGQARH ARRE HRNRSG
Sbjct: 121 ARNSTIFRHPTLGDFELQHLPAGANDADLEERILQHLAAAAAMGQARHSARRESHRNRSG 180

Query: 181 IHGRPQFLVFSSHPNSSSTSPPPGDNREGEASPRIMVATISPPPSAGEESPQLNASVSP- 240
           IHGRPQFLVFSSHPNSSSTSP  GD+REGEA+PRIMVA+ISPPP AGEE+PQ NASVSP 
Sbjct: 181 IHGRPQFLVFSSHPNSSSTSPSSGDDREGEAAPRIMVASISPPPPAGEEAPQSNASVSPV 240

Query: 241 -TDQSSPSVPQSSSASASQLGSPLSDSYIEFIGHVLILLPPTLLRRSSSQPVPNSQDRAG 300
            TDQSSPS PQSSSASASQLGSP S+                  RRSSSQPVPN+QDRAG
Sbjct: 241 QTDQSSPSAPQSSSASASQLGSPSSE------------------RRSSSQPVPNNQDRAG 300

Query: 301 PSELQSFSDSLKSRFNAMSMRYKDSITKSTRGWREKLFSRNTSMSDIGSEVRREVNAGIA 360
           PSELQSFSDSLKSRFNAMSMRYKDSITKST+GW+EKLFSRNTSMSDIGSEVRREVNAGIA
Sbjct: 301 PSELQSFSDSLKSRFNAMSMRYKDSITKSTKGWKEKLFSRNTSMSDIGSEVRREVNAGIA 360

Query: 361 TVSRMMERLETKDARKSSSPESSSSVGDNSPVSESNNRQIPENGGNNPLSDTNKEGPCPA 420
           TVSRMMERLET+DARKSSSPE SSSVG NSPVSESNNR +PENGGN+P +DTNKEGP  A
Sbjct: 361 TVSRMMERLETRDARKSSSPE-SSSVGGNSPVSESNNRSMPENGGNSPSTDTNKEGPRSA 389

Query: 421 ESSSS 424
           ESSSS
Sbjct: 421 ESSSS 389

[Close]

BLAST of Lsi06G006010 vs. NCBI nr
Match: gi|659098845|ref|XP_008450320.1| (PREDICTED: E3 ubiquitin-protein ligase RHF2A-like isoform X4 [Cucumis melo])

HSP 1 Score: 650.6 bits (1677), Expect = 1.9e-183
Identity = 358/420 (85.24%), Postives = 370/420 (88.10%), Query Frame = 1


Query: 6   MDETKKSEAHLTSAAAFVEGGIQDACDDACSICLENFCDSDPSTMTSCKHEFHLQCVLEC 65
           MDETKKSEAHLTSAAAFVEGGIQDACDDACSICLENFCDSDPSTMTSCKHEFHLQCVLE 
Sbjct: 1   MDETKKSEAHLTSAAAFVEGGIQDACDDACSICLENFCDSDPSTMTSCKHEFHLQCVLEW 60

Query: 66  GFLGANRRNAILKDCARCQRSSQCPMCWQPISLKDPTSQELLEAVEQERSFRLNPARNST 125
                            CQRSSQCPMCWQPISLKDPTSQELLEAVEQERSFRLNPARNST
Sbjct: 61  -----------------CQRSSQCPMCWQPISLKDPTSQELLEAVEQERSFRLNPARNST 120

Query: 126 IFRHPTLGDFELQHLPAGANDADLEERILQHLAAAAAMGQARHGARREGHRNRSGIHGRP 185
           IFRHPTLGDFELQHLPAGA+DADLEERILQHLAAAAAMGQARH ARRE HRNRSGIHGRP
Sbjct: 121 IFRHPTLGDFELQHLPAGASDADLEERILQHLAAAAAMGQARHSARRESHRNRSGIHGRP 180

Query: 186 QFLVFSSHPNSSSTSPPPGDNREGEASPRIMVATISPPPSAGEESPQLNASVSP--TDQS 245
           QFLVFSSHPNSSSTSPPPGD+REGEA+PRIMVA+ISPP  AGEE+PQ NASVSP  TDQS
Sbjct: 181 QFLVFSSHPNSSSTSPPPGDDREGEAAPRIMVASISPPSPAGEEAPQSNASVSPVQTDQS 240

Query: 246 SPSVPQSSSASASQLGSPLSDSYIEFIGHVLILLPPTLLRRSSSQPVPNSQDRAGPSELQ 305
           SPS PQSSSASASQLGSP S+                  RRSSSQPVPNSQDRA PSELQ
Sbjct: 241 SPSAPQSSSASASQLGSPPSE------------------RRSSSQPVPNSQDRAEPSELQ 300

Query: 306 SFSDSLKSRFNAMSMRYKDSITKSTRGWREKLFSRNTSMSDIGSEVRREVNAGIATVSRM 365
           SFSDSLKSRFNAMSMRYKDSITKSTRGWREKLFSRNTSMSDIGSEVRREVNAGIATVSRM
Sbjct: 301 SFSDSLKSRFNAMSMRYKDSITKSTRGWREKLFSRNTSMSDIGSEVRREVNAGIATVSRM 360

Query: 366 MERLETKDARKSSSPESSSSVGDNSPVSESNNRQIPENGGNNPLSDTNKEGPCPAESSSS 424
           MERLET+DARKSSSPE SSSVGD++PVSESNNR +PENGGN+ L+DTNKEGP PAESSSS
Sbjct: 361 MERLETRDARKSSSPE-SSSVGDSNPVSESNNRSMPENGGNSSLTDTNKEGPRPAESSSS 384

The following BLAST results are available for this feature:

BLAST of Lsi06G006010 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RHF2A_ARATH	4.8e-110	56.94	E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana GN=RHF2A PE=2 SV=1	[more]
RHF1A_ARATH	1.2e-17	33.68	E3 ubiquitin-protein ligase RHF1A OS=Arabidopsis thaliana GN=RHF1A PE=1 SV=1	[more]

BLAST of Lsi06G006010 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M0B5_CUCSA	1.2e-184	84.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G629730 PE=4 SV=1	[more]
A0A067E1G9_CITSI	6.7e-127	61.94	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g016591mg PE=4 SV=1	[more]
M5WB81_PRUPE	8.7e-127	62.53	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006952mg PE=4 SV=1	[more]
V4SEP8_9ROSI	1.1e-126	61.70	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030283mg PE=4 SV=1	[more]
A0A061GV15_THECC	7.4e-126	64.78	RING-H2 group F2A isoform 1 OS=Theobroma cacao GN=TCM_041186 PE=4 SV=1	[more]

BLAST of Lsi06G006010 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G22000.2	7.8e-111	56.83	RING-H2 group F2A	[more]
AT4G14220.1	7.0e-19	33.68	RING-H2 group F1A	[more]

BLAST of Lsi06G006010 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659098843\|ref\|XP_008450319.1\|	2.4e-186	85.41	PREDICTED: E3 ubiquitin-protein ligase RHF2A-like isoform X3 [Cucumis melo]	[more]
gi\|659098841\|ref\|XP_008450318.1\|	2.0e-185	84.94	PREDICTED: E3 ubiquitin-protein ligase RHF2A-like isoform X2 [Cucumis melo]	[more]
gi\|659098839\|ref\|XP_008450317.1\|	3.5e-185	85.34	PREDICTED: E3 ubiquitin-protein ligase RHF2A-like isoform X1 [Cucumis melo]	[more]
gi\|449442598\|ref\|XP_004139068.1\|	1.7e-184	84.71	PREDICTED: E3 ubiquitin-protein ligase RHF2A-like isoform X2 [Cucumis sativus]	[more]
gi\|659098845\|ref\|XP_008450320.1\|	1.9e-183	85.24	PREDICTED: E3 ubiquitin-protein ligase RHF2A-like isoform X4 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process	GO:0051603	proteolysis involved in cellular protein catabolic process
biological_process	GO:0048229	gametophyte development
biological_process	GO:0044265	cellular macromolecule catabolic process
biological_process	GO:0048856	anatomical structure development
biological_process	GO:1901575	organic substance catabolic process
biological_process	GO:0000209	protein polyubiquitination
biological_process	GO:0007165	signal transduction
biological_process	GO:0051726	regulation of cell cycle
biological_process	GO:0032787	monocarboxylic acid metabolic process
biological_process	GO:0044248	cellular catabolic process
biological_process	GO:0055046	microgametogenesis
biological_process	GO:0009561	megagametogenesis
biological_process	GO:0050794	regulation of cellular process
biological_process	GO:0050896	response to stimulus
biological_process	GO:0044763	single-organism cellular process
biological_process	GO:0008150	biological_process
biological_process	GO:0044699	single-organism process
biological_process	GO:0042787	protein ubiquitination involved in ubiquitin-dependent protein catabolic process
biological_process	GO:0044238	primary metabolic process
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0044464	cell part
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0061630	ubiquitin protein ligase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G006010.1	Lsi06G006010.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF17123	zf-RING_11	coord: 35..62 score: 5.
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 35..92 score: 0.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 35..92 score: 10
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 32..112 score: 3.1
None	No IPR available	PANTHER	PTHR22763	RING ZINC FINGER PROTEIN	coord: 83..190 score: 9.2E-103coord: 12..65 score: 9.2E
None	No IPR available	PANTHER	PTHR22763:SF47	SUBFAMILY NOT NAMED	coord: 83..190 score: 9.2E-103coord: 12..65 score: 9.2E
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 28..100 score: 2.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi06G006010	Csa1G629730	Cucumber (Chinese Long) v2	culsiB058
Lsi06G006010	CSPI01G31220	Wild cucumber (PI 183967)	cpilsiB059
Lsi06G006010	Cucsa.355720	Cucumber (Gy14) v1	cgylsiB573
Lsi06G006010	CmaCh10G008790	Cucurbita maxima (Rimu)	cmalsiB073
Lsi06G006010	CmaCh11G008930	Cucurbita maxima (Rimu)	cmalsiB128
Lsi06G006010	CmoCh11G009070	Cucurbita moschata (Rifu)	cmolsiB118
Lsi06G006010	CmoCh10G009200	Cucurbita moschata (Rifu)	cmolsiB059
Lsi06G006010	Cla007338	Watermelon (97103) v1	lsiwmB397
Lsi06G006010	MELO3C015094	Melon (DHL92) v3.5.1	lsimeB396
Lsi06G006010	ClCG03G012410	Watermelon (Charleston Gray)	lsiwcgB364
Lsi06G006010	MELO3C015094.2	Melon (DHL92) v3.6.1	lsimedB418
Lsi06G006010	Cla97C03G062740	Watermelon (97103) v2	lsiwmbB365
Lsi06G006010	Bhi02G001228	Wax gourd	lsiwgoB520
Lsi06G006010	Cp4.1LG04g12500	Cucurbita pepo (Zucchini)	cpelsiB563
Lsi06G006010	Cp4.1LG18g01980	Cucurbita pepo (Zucchini)	cpelsiB299
Lsi06G006010	CsGy1G030410	Cucumber (Gy14) v2	cgyblsiB055
Lsi06G006010	Carg25977	Silver-seed gourd	carlsiB807
Lsi06G006010	Carg17849	Silver-seed gourd	carlsiB886
Lsi06G006010	CsaV3_1G043600	Cucumber (Chinese Long) v3	cuclsiB068

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None