Lsi06G003810 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G003810
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Transcription initiation factor TFIID TATA-box-binding protein
Location	chr06 : 4208342 .. 4209780 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAAAATCGGAAGGCAATAAAAAAGCCACCTCAAGAAATAAATCCCTCAACCGCACAAAGCTCCAAATTTCTCCCCACGAACACCCATTCTCTCCCATATCGTTCTTCTCTTTCGAAACCAAACTTCAAAACTCTCTCCCATTTATATAGCGCTCTCTCTCAAATAACCCAGATATAAAACACATCGCTTTTCAAATTCTTCCCGCTTCCTTACCCATCAATCCTTCCTCATTATCCCCAATTTTTTCCCATTTAATTTGACAGGAAATTCTTCGCTCAATTCTAGGGTTTCCCATTTGCAAGAGGTCTGTTTGTTTTGTTTTGTTATCGTTGGTCTTGTGATCCACAGATCGGTGTATTGGGGTGTTGGGGGGCTATAGTTTTTGGGTTTTGATTTAGCTTTTTGTTGGGTTTGTGTATTGTCTTCCTCAGTTGGCATCTAGGGCATGTTTTGTTTAGATTTGCCTTTGTGGGTCGTTGTGGGTTGTTGTATATACCTCGAGAGGATGGGTTTTTTATAACCCTTTTAATGATTAATCAAAGTGGAGTGGTTTTCTATGATCCCTGTATTTTGTTTGATCTTTATCGTTAATTTGATAAGTGCGGCTGTGATTTCCGTTTTTTTTTTTTATAATTGTTTTGGAGAGAGAATTTAAAGAGTGAAGTTCTGTCGTGCAGAGATTTCTTATAAGGAATGGCAGATCAAGGCTTGGAAGGAGCCCAACCCGTTGATCTTACAAAGCATCCTTCTGGGATTGTGCCTACCCTCCAGTGAGTTATCACTTTTCCAACCGCTTGTGCCTTCTGATTGTGTATAATAGCTGTTTTTTGCAAGACAAATTATAGTGTTTCATCAGTATTAAGTGGTGGTTATATATATAGTAAATCTCAACGATAAATTGGTATCATGGACGTTTTTAATGATTTACATCCAGAAATTGGGTTGCTCTGGAAGAGATAGTAGTTTAACTTTTCAGCCTATGCTCCATATGAGCCTCTAATATTGACTTGGTGTGATTCTTTCAAACTCTCGAGCTTTGAAATATTCAAGAAAATACACTCAATCTCTTTCTCCTCCCATGTCTCTCTCTCTCTCTCTCTCTCTCTCGTGCACACTCAAAGTAACACAGATATCAAATAAAAAAAAATAAAAAAACAAGGTTGGGTTGGGTTCTCTATTTGCTGTTTCATTCCCATTTTGTGAAGTACAATGTAGGCATCAAATTTCTATTTGTTTTGGCTTTACATGTTTAGATACTCCATGTATGTACTATCTTTTTATTTTTTATTTTTTTATGTTTCTTGATGGACGTACAATGAATTATGTTTCTAGGAACATTGTGTCAACAGTGAATCTGGACTGCAAGTTGGATCTGAAGGCGATTGCTCTTCAAGCTCGCAATGCTGAATATAATCCCAAGGCAAGTGGCTTTTTATAA

mRNA sequence

GCAAAATCGGAAGGCAATAAAAAAGCCACCTCAAGAAATAAATCCCTCAACCGCACAAAGCTCCAAATTTCTCCCCACGAACACCCATTCTCTCCCATATCGTTCTTCTCTTTCGAAACCAAACTTCAAAACTCTCTCCCATTTATATAGCGCTCTCTCTCAAATAACCCAGATATAAAACACATCGCTTTTCAAATTCTTCCCGCTTCCTTACCCATCAATCCTTCCTCATTATCCCCAATTTTTTCCCATTTAATTTGACAGGAAATTCTTCGCTCAATTCTAGGGTTTCCCATTTGCAAGAGAGATTTCTTATAAGGAATGGCAGATCAAGGCTTGGAAGGAGCCCAACCCGTTGATCTTACAAAGCATCCTTCTGGGATTGTGCCTACCCTCCAGAACATTGTGTCAACAGTGAATCTGGACTGCAAGTTGGATCTGAAGGCGATTGCTCTTCAAGCTCGCAATGCTGAATATAATCCCAAGGCAAGTGGCTTTTTATAA

Coding sequence (CDS)

ATGGCAGATCAAGGCTTGGAAGGAGCCCAACCCGTTGATCTTACAAAGCATCCTTCTGGGATTGTGCCTACCCTCCAGAACATTGTGTCAACAGTGAATCTGGACTGCAAGTTGGATCTGAAGGCGATTGCTCTTCAAGCTCGCAATGCTGAATATAATCCCAAGGCAAGTGGCTTTTTATAA

Protein sequence

MADQGLEGAQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKASGFL

Homology

[Close]

BLAST of Lsi06G003810 vs. Swiss-Prot
Match: TBP_SOLTU (TATA-box-binding protein OS=Solanum tuberosum GN=TBP PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.7e-24
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 1


Query: 1  MADQGLEGAQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 56
          MADQGLEG+QPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
Sbjct: 1  MADQGLEGSQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 55

[Close]

BLAST of Lsi06G003810 vs. Swiss-Prot
Match: TBP2_ARATH (TATA-box-binding protein 2 OS=Arabidopsis thaliana GN=TBP2 PE=1 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 6.3e-24
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 1


Query: 1  MADQGLEGAQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 56
          MADQG EG+QPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
Sbjct: 1  MADQGTEGSQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 55

[Close]

BLAST of Lsi06G003810 vs. Swiss-Prot
Match: TBP_SOYBN (TATA-box-binding protein OS=Glycine max GN=TBP1 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 2.4e-23
Identity = 52/55 (94.55%), Postives = 53/55 (96.36%), Query Frame = 1


Query: 1  MADQGLEGAQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 56
          MADQGLEG+QPVDL KHPSGIVPTLQNIVSTVNLDCKLDLK IALQARNAEYNPK
Sbjct: 1  MADQGLEGSQPVDLQKHPSGIVPTLQNIVSTVNLDCKLDLKTIALQARNAEYNPK 55

[Close]

BLAST of Lsi06G003810 vs. Swiss-Prot
Match: TBP1_ARATH (TATA-box-binding protein 1 OS=Arabidopsis thaliana GN=TBP1 PE=1 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 5.3e-23
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 1


Query: 1  MADQGLEGAQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 56
          M DQGLEG+ PVDL+KHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
Sbjct: 1  MTDQGLEGSNPVDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 55

[Close]

BLAST of Lsi06G003810 vs. Swiss-Prot
Match: TBP2_MAIZE (TATA-box-binding protein 2 OS=Zea mays GN=TBP2 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 6.9e-23
Identity = 51/55 (92.73%), Postives = 54/55 (98.18%), Query Frame = 1


Query: 1  MADQGLEGAQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 56
          MA+ GLEG+QPVDL+KHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
Sbjct: 1  MAEPGLEGSQPVDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 55

[Close]

BLAST of Lsi06G003810 vs. TrEMBL
Match: K4AV74_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.8e-22
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 1


Query: 1  MADQGLEGAQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 56
          MADQGLEG+QPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
Sbjct: 1  MADQGLEGSQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 55

[Close]

BLAST of Lsi06G003810 vs. TrEMBL
Match: A0A0V0HPN8_SOLCH (Putative TATA-box-binding protein-like OS=Solanum chacoense PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.8e-22
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 1


Query: 1  MADQGLEGAQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 56
          MADQGLEG+QPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
Sbjct: 1  MADQGLEGSQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 55

[Close]

BLAST of Lsi06G003810 vs. TrEMBL
Match: D7KMA2_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_474610 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.1e-22
Identity = 53/55 (96.36%), Postives = 55/55 (100.00%), Query Frame = 1


Query: 1  MADQGLEGAQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 56
          MADQG+EG+QPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
Sbjct: 1  MADQGMEGSQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 55

[Close]

BLAST of Lsi06G003810 vs. TrEMBL
Match: A0A0L9VQX5_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan11g048300 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.1e-22
Identity = 54/57 (94.74%), Postives = 55/57 (96.49%), Query Frame = 1


Query: 1  MADQGLEGAQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKAS 58
          MADQGLEG+QPVDL KHPSGIVPTLQNIVSTVNLDCKLDLK IALQARNAEYNPKAS
Sbjct: 1  MADQGLEGSQPVDLQKHPSGIVPTLQNIVSTVNLDCKLDLKTIALQARNAEYNPKAS 57

[Close]

BLAST of Lsi06G003810 vs. TrEMBL
Match: R0IJ99_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10010337mg PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.1e-22
Identity = 53/55 (96.36%), Postives = 55/55 (100.00%), Query Frame = 1


Query: 1  MADQGLEGAQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 56
          MADQG+EG+QPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
Sbjct: 1  MADQGMEGSQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 55

[Close]

BLAST of Lsi06G003810 vs. TAIR10
Match: AT1G55520.1 (AT1G55520.1 TATA binding protein 2)

HSP 1 Score: 110.5 bits (275), Expect = 3.5e-25
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 1


Query: 1  MADQGLEGAQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 56
          MADQG EG+QPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
Sbjct: 1  MADQGTEGSQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 55

[Close]

BLAST of Lsi06G003810 vs. TAIR10
Match: AT3G13445.1 (AT3G13445.1 TATA binding protein 1)

HSP 1 Score: 107.5 bits (267), Expect = 3.0e-24
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 1


Query: 1  MADQGLEGAQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 56
          M DQGLEG+ PVDL+KHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
Sbjct: 1  MTDQGLEGSNPVDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 55

[Close]

BLAST of Lsi06G003810 vs. NCBI nr
Match: gi|568215118|ref|NP_001275090.1| (TATA-box-binding protein [Solanum tuberosum])

HSP 1 Score: 112.5 bits (280), Expect = 2.6e-22
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 1


Query: 1  MADQGLEGAQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 56
          MADQGLEG+QPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
Sbjct: 1  MADQGLEGSQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 55

[Close]

BLAST of Lsi06G003810 vs. NCBI nr
Match: gi|920718253|gb|KOM57450.1| (hypothetical protein LR48_Vigan11g048300 [Vigna angularis])

HSP 1 Score: 111.7 bits (278), Expect = 4.5e-22
Identity = 54/57 (94.74%), Postives = 55/57 (96.49%), Query Frame = 1


Query: 1  MADQGLEGAQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKAS 58
          MADQGLEG+QPVDL KHPSGIVPTLQNIVSTVNLDCKLDLK IALQARNAEYNPKAS
Sbjct: 1  MADQGLEGSQPVDLQKHPSGIVPTLQNIVSTVNLDCKLDLKTIALQARNAEYNPKAS 57

[Close]

BLAST of Lsi06G003810 vs. NCBI nr
Match: gi|297853252|ref|XP_002894507.1| (hypothetical protein ARALYDRAFT_474610 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 111.7 bits (278), Expect = 4.5e-22
Identity = 53/55 (96.36%), Postives = 55/55 (100.00%), Query Frame = 1


Query: 1  MADQGLEGAQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 56
          MADQG+EG+QPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
Sbjct: 1  MADQGMEGSQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 55

[Close]

BLAST of Lsi06G003810 vs. NCBI nr
Match: gi|727439579|ref|XP_010501160.1| (PREDICTED: TATA-box-binding protein 2-like isoform X1 [Camelina sativa])

HSP 1 Score: 111.7 bits (278), Expect = 4.5e-22
Identity = 53/55 (96.36%), Postives = 55/55 (100.00%), Query Frame = 1


Query: 1  MADQGLEGAQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 56
          MADQG+EG+QPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
Sbjct: 3  MADQGMEGSQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 57

[Close]

BLAST of Lsi06G003810 vs. NCBI nr
Match: gi|565495996|ref|XP_006305637.1| (hypothetical protein CARUB_v10010337mg [Capsella rubella])

HSP 1 Score: 111.7 bits (278), Expect = 4.5e-22
Identity = 53/55 (96.36%), Postives = 55/55 (100.00%), Query Frame = 1


Query: 1  MADQGLEGAQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 56
          MADQG+EG+QPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK
Sbjct: 1  MADQGMEGSQPVDLTKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPK 55

The following BLAST results are available for this feature:

BLAST of Lsi06G003810 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TBP_SOLTU	1.7e-24	98.18	TATA-box-binding protein OS=Solanum tuberosum GN=TBP PE=2 SV=1	[more]
TBP2_ARATH	6.3e-24	96.36	TATA-box-binding protein 2 OS=Arabidopsis thaliana GN=TBP2 PE=1 SV=1	[more]
TBP_SOYBN	2.4e-23	94.55	TATA-box-binding protein OS=Glycine max GN=TBP1 PE=2 SV=1	[more]
TBP1_ARATH	5.3e-23	92.73	TATA-box-binding protein 1 OS=Arabidopsis thaliana GN=TBP1 PE=1 SV=1	[more]
TBP2_MAIZE	6.9e-23	92.73	TATA-box-binding protein 2 OS=Zea mays GN=TBP2 PE=2 SV=1	[more]

BLAST of Lsi06G003810 vs. TrEMBL


Match Name	E-value	Identity	Description
K4AV74_SOLLC	1.8e-22	98.18	Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1	[more]
A0A0V0HPN8_SOLCH	1.8e-22	98.18	Putative TATA-box-binding protein-like OS=Solanum chacoense PE=3 SV=1	[more]
D7KMA2_ARALL	3.1e-22	96.36	Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA...	[more]
A0A0L9VQX5_PHAAN	3.1e-22	94.74	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan11g048300 PE=4 SV=1	[more]
R0IJ99_9BRAS	3.1e-22	96.36	Uncharacterized protein OS=Capsella rubella GN=CARUB_v10010337mg PE=3 SV=1	[more]

BLAST of Lsi06G003810 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G55520.1	3.5e-25	96.36	TATA binding protein 2	[more]
AT3G13445.1	3.0e-24	92.73	TATA binding protein 1	[more]

BLAST of Lsi06G003810 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|568215118\|ref\|NP_001275090.1\|	2.6e-22	98.18	TATA-box-binding protein [Solanum tuberosum]	[more]
gi\|920718253\|gb\|KOM57450.1\|	4.5e-22	94.74	hypothetical protein LR48_Vigan11g048300 [Vigna angularis]	[more]
gi\|297853252\|ref\|XP_002894507.1\|	4.5e-22	96.36	hypothetical protein ARALYDRAFT_474610 [Arabidopsis lyrata subsp. lyrata]	[more]
gi\|727439579\|ref\|XP_010501160.1\|	4.5e-22	96.36	PREDICTED: TATA-box-binding protein 2-like isoform X1 [Camelina sativa]	[more]
gi\|565495996\|ref\|XP_006305637.1\|	4.5e-22	96.36	hypothetical protein CARUB_v10010337mg [Capsella rubella]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006352	DNA-templated transcription, initiation

Vocabulary: **INTERPRO**
Term	Definition
IPR012295	TBP_dom_sf
IPR000814	TBP

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0009733	response to auxin
biological_process	GO:0046686	response to cadmium ion
biological_process	GO:0009723	response to ethylene
biological_process	GO:0009739	response to gibberellin
biological_process	GO:0009753	response to jasmonic acid
biological_process	GO:0009751	response to salicylic acid
biological_process	GO:0009651	response to salt stress
biological_process	GO:0031627	telomeric loop formation
biological_process	GO:0006334	nucleosome assembly
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0005634	nucleus
cellular_component	GO:0000784	nuclear chromosome, telomeric region
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003691	double-stranded telomeric DNA binding
molecular_function	GO:0042803	protein homodimerization activity
molecular_function	GO:0043047	single-stranded telomeric DNA binding
molecular_function	GO:0017025	TBP-class protein binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G003810.1	Lsi06G003810.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000814	TATA-box binding protein	PRINTS	PR00686	TIFACTORIID	coord: 25..40 score: 9.0E-10coord: 49..60 score: 9.0
IPR000814	TATA-box binding protein	PANTHER	PTHR10126	TATA-BOX BINDING PROTEIN	coord: 1..55 score: 4.4
IPR000814	TATA-box binding protein	PFAM	PF00352	TBP	coord: 24..56 score: 8.
IPR012295	Beta2-adaptin/TBP, C-terminal domain	GENE3D	G3DSA:3.30.310.10		coord: 19..56 score: 1.3
None	No IPR available	PANTHER	PTHR10126:SF23	SUBFAMILY NOT NAMED	coord: 1..55 score: 4.4
None	No IPR available	unknown	SSF55945	TATA-box binding protein-like	coord: 20..57 score: 5.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi06G003810	Csa1G599390	Cucumber (Chinese Long) v2	culsiB058
Lsi06G003810	CSPI01G29140	Wild cucumber (PI 183967)	cpilsiB059
Lsi06G003810	Cucsa.142180	Cucumber (Gy14) v1	cgylsiB230
Lsi06G003810	CmaCh11G007700	Cucurbita maxima (Rimu)	cmalsiB128
Lsi06G003810	CmaCh10G008050	Cucurbita maxima (Rimu)	cmalsiB063
Lsi06G003810	CmoCh11G007780	Cucurbita moschata (Rifu)	cmolsiB118
Lsi06G003810	CmoCh10G008320	Cucurbita moschata (Rifu)	cmolsiB050
Lsi06G003810	MELO3C015563	Melon (DHL92) v3.5.1	lsimeB396
Lsi06G003810	ClCG03G014650	Watermelon (Charleston Gray)	lsiwcgB364
Lsi06G003810	MELO3C015563.2	Melon (DHL92) v3.6.1	lsimedB418
Lsi06G003810	Cla97C03G064880	Watermelon (97103) v2	lsiwmbB365
Lsi06G003810	Cp4.1LG18g02990	Cucurbita pepo (Zucchini)	cpelsiB305
Lsi06G003810	CsGy1G028360	Cucumber (Gy14) v2	cgyblsiB055
Lsi06G003810	Carg12920	Silver-seed gourd	carlsiB086
Lsi06G003810	Carg25193	Silver-seed gourd	carlsiB452
Lsi06G003810	CsaV3_1G041520	Cucumber (Chinese Long) v3	cuclsiB068

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G003810	Wax gourd	lsiwgoB517
Lsi06G003810	Cucurbita pepo (Zucchini)	cpelsiB563
Lsi06G003810	Watermelon (97103) v1	lsiwmB396