Lsi06G001470 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G001470
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Ribosome biogenesis BRX1
Location	chr06 : 1537917 .. 1546539 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAGAAACACTCACTCTGTGCCGCTTCTCTTTCTCTGTCTGATCAGCACCTTCGTCCTCTTCATCCAGCCACCCGCAGGCAGGCGCCGCCGCTTCATCGCCGATCATCTCCGCCAGTCGACGTTTCTGGAAAGCTTTTGAGTTCTCTTCGTTTCTCTTTTCCACTCACTCTCGGTTTCTCTTCTCCTCACAGCACCGCCGTTCACCGCCCTCAGTGGACGCCGCTCGCCGCTGCCGTCTAGTGGCCAGTCACCCCCGCTGGTCGTGATCGCCACTGCCGCCGGATTCGTACAGCGGACGGGTAAGAATAATCCGTTCAGTTTAAATCACATTACCCATAGCTTGTAGAGTTCAAAATATGTAAGTTCGAACTTTTTCGAACATGAACCAGCAAGAAATTAAGCTTTTCAGCATAAATTACTGGGTAAGGACTCATTTTATTAATTTCCAAACTCGTTGCAACTTAAGTGCTGTTAGTTAGACTTTGGCCTTTGAAATTCTTCCTTTTGCAATTTCGAGCTAATTTTGGACGAATCGACACAGAAGCTTAAGACCGGGTTAATATGGTTAAGTAATAGCATTTAAATTGAGTTTCAAAGTAATTTTGGTTAAAGTTCTTAGTTATGAAAATTTGTTTCAGGTCGGCAAAGGACTTTTAAGTTGGGTCAAACTAGTTAACAAAGTAAGTAACTTAACTACCGATTCGCCTTAAGTGCCAGGTTGTTAGTTAATAAGGATTTGTTTGCTCATTTGCTGTAATTTATCTAGGATTATGTGTGTTTGTGATGTGATGTAACTGAGTATGTTGAATTTTGTGTTAAGCTTCCAAATGTGAAAAGTTATTTGTAAATATTGTAAGCTTGAAACGCCTTTGGGATTCGTTGTTTCTCTTGCATCATATGATTATGACGGGACATCAACTGATTAAGTCATGGGACCTCAGGCATATGTGTATACGCATAGTCGTTATATTTAAAAGTTATGATTCCAAAGACTGGAAGATTGCTTCGCTTCCCCTTTCATAAGGAGGGCTTGGCATTGGTTCCCTTGGAGATTTGCGAAGGTGGGTAAGACCTTATGGAAACAAGTGGTGGTTAGTATTTATTGGAAAGAACCTCTTGGTCGAAAAGCTACTTTACCTAAAGGGAGCTCATATAATAGGCCCTGGTTTGATATTTGCTATGACAGTCCCTTTGTCCGAATATTTCTCTAGTTTCAGAATTGGTAATGGACAACGTATAAGCTTCTGGAATGATGTATGGCTTGGCGCTTCTCCTCTTAAAGATAAGTTTCCAGATATGATATGAACGGAGGAACCTAAATCGTGGCATATGAACTTTAAGAACGACGCTAAGAATGCACACTATATGTTGTTCAAATTCACCTTCAAGAGAACTTGCAATTATGAGAAATCAAGTGGAATTTATGAAGAATCAAGCTTCATTTATGGAACAAGGACTTCAAGTGGGGCGTCACAACTCAAAGATGGTTACAAATTGATGGGTTGTTGATTAAAAATGAATATTTTCGGATTTATGGTAATAATTAAATGTAATTTTCAGTTTTAAGTCATTTTATGTGTTGTATGTTACATTTAGATCATGAGTTGTAATGGTCATCAATTGTGAGAGTTACAACTCTTTGAATGCCTCATAGAATGTCTAGGGTTATATTTTGAGGCCTATATAATGTAATGTAATTTGTCAAAAAAGTGGACTTTGGAAAATGTAGTAAAAGGAGCCTTTGAGCTTTCTTTTAGCCTTGAGCTATGTTTCCTTTGCAATTCTATGGTGTTTAGGTTGCATGTTTAGAATCATTCAAGCTTGACTTGATCGATCTTGCTTGTGGAGTAATTCGAAGATCAAGGGTCGATGGGAGCCGCAAGCTTTGTCCGATCCGTGATTTTGCTGATCGTCTAAGTAATCTGTCATCTAGCCATTCTTAGGGGCTGAGATCCAATTGAATTTGGGGTCTTTTGCGGTTGAGTTCTAAAGGTCTTGTTCGTCAACATGGTTGTTAGATCCAACGCGTCGAGGGTTACTTATCAAGATATGTTTAATCTCTCCCTAAAACAAGGAGCTTCGGTGGTTGAATGTTGGGGTAATGACCTAGAGACTTTGAACCTTACTTTTGAGGTGGCATTTTTTATAGAGGTCAAGAATGGGCCAGGTTGACCATGAAACTAAGGGGCTGTTTGAGAGGCTGGAATGTAATCAGGATTACTGAGAATGAAGAGTGTTTGAATGAGTGAGGAATCGATGGTGGAACGGAAGTGAGATTGTGAAGCATGAAAACGGTGGAAAAGAGGGTTGTGTTGAAAGCTGTGAGAACGGAATGAGTTTGGTATTAAAAACCGGGCCTAAAACGCTCAATCTAAACATGATTTTTGGATTACATTACATTCAAACCCATTCCATTATGGATCCCAAACAACCCCTAAAGGTTTTTGTTTAAGGGCGTTCGAGGATAACTTATGCTGGTCACTTGAGCCTTTAGGCTGTTTATCTACTACATCCCTCTTCTATAAACTTGTTAGTGTGAGACATAATCTTCAATGTATGATTGCTAACCAGATTTGGGGTCTCAAAGTTCCCAAAAAGATATCTTTTTTTTTTTTTAATAGTCAGTGGCTCATAGAAGCTTGAATACAAATGGTAGGCTCCAAAGAAGAAATCCCTCTCTTCTTCTTGGCCTTCAGTCTGTCCTTTATGTTGGCACATGGAGGAGTTCTTAGATCACATTTTCTTGCATTGCTCCTTTGCGAAACATGGGTGGGACAAGTTGCTGGCCATTTTTTATATTAAAGGTGGATGATTGGCTGTTAGAATCTATGAGTGGATGGCAGTTGGAAAACAAAGCTGGTTGTATATGGAAGTTTGCATCTAGAAGCCTTCTTGGAGCCTATGGTTGGAAAGGAATAGGAGAATTTTTGAAGATTAGTCTTCCTCTATGAGTTATTTTGGGATTGCTTTTAGTCAAACACTTCTTGTTGGTGTCACAGCTTATTAAATTTTGAGAAGGTAGAGACAGTTGAAAAGAGAGAGAGAATGAAAGAAAGGGAGCGACTTAAGGCAAAACCCTAAAGGGCTGTTTGGGAGGCTGGAATGTAATCAGGATTATTGGGAATTAGGGGAGTGTTGAAATGCGTGAGGTATCAAGAACGGAACAGAAATTGGGTTGTGAAACGTGAAAATAGTGGGAAAGAGGGTTTGGTTAAAAATTGTCGAAACGAAATGAGTTTAATATTACAAATCGGGCCCAAGACGTTTAATTCAAACATTGGTTTTAGATTACATTACAATGCAAACCCATTCCATTATGGGCCCCCAAACAACTCTTAAAATACTCAACGATGTTTAGGGATCACAAAGCAAGGAACCACAAGGGACCACATATTTTTATTTATAAAATATAAATAAACATTTCTTTATGCTAATTGCCAAACAAGGAGCCACAAATTGCAGAACAATGTGGTTTTTTTTTAATTGAACTGAACCGAGTTGGTTTGGTTTGAATAATCACAAAGCCTCAACTGAACCGATTCAAACTGCCCTGGTTCAGTTCGGGTTATTTCACCCCTAATTTGTAATACCAATATTTCTCCTAAAACTAATTTTCAAGTAAAGGCAGTGACATTCTCGGCAATCAACAGAAATGGTTGAAAAGGAGTAAGAGAGATTTAGGAAGCATAGCTAATTTTCATTTTTGCATTTCATTTTTGTATCCAATCATTTTATTATTCCTCTGTTATATAAAATTTTGGTTCAAGGATTTGTGAATGGTTTATATGTTTTCTTTCTCTTAAATTTTAAGATTTAAATTTCTCGTGTATTTTAATGTTTTTGGGATCCCAAATAAAGATTTATTTCTATCTAATGTTTAACTCCTATCGAGCCTTTGAGTGTTTTATGCATGCATGTAGTAATGATCCTGTTTAGAATGTATCTTAGAAGTTAGGTCATTTCACTCTCACTCTTCATCCTTAATAGATTTATTTAATCTCCATTGCTTAATTTAGGTCTAGTATTTCTGAAGGGGTGATATTCTCAATGGCAAAGAAGAGGAAGCATAGTGAGACTTTGCCGATAGTATCGGTTAAGAAGGACGACAATGCTCCTGAGAGACCCAAGCGGACGCTCATGGGTTGGAAAGACAAAGAAGTGGCAAAAGAGTGTGAAGCTGGTTCTGATCATGCTATTTTTCGGAATAAAGAAAAGGTTCTCGTCACTTGTTCCCGCCGAATCAATTTTAGGTACGAAATATAGTTGAAACATGTTGGTGTAGCTTTTTGTAAAATCTATTAACAGGTATATACAGGGTCAAGTAGTTTGTGATATAACTTTTTGCTCACCAACCAAAGTTTAAGTTTTTTTTTTTTAATAGACCAATTTTTTTTTTCATTATGTTGTTCTTATAAAAAAAAATATAGGGTCAGGTAGTCTGTGATGTAACTTTTTGCTCACCAACCAACAATTTTTTTTTTTTTTTTTTTAATAGACCATTTCTTTTTTCATTAGAATTTTTGACAATTTTATTAACCTTTGTGATTGATTAGGTATCGACATTTGATGTTGAATATAGTATCACTTTTGCCACATTGTAAGAAGGATAACAAGGTAGAGTCGAGGTCCAGCAAGGGTGCAACACTGAATGAGTTGGTTGAGCTCAAGGGTTGTTCTTCCAGCCTATTTTTTGAGGTTAGAACTTTTGCTTCGCACTTTGACCATGTTTAAACTTGGAATTCAATTCATAATCTGGAATTTGTAAGGTGTAGTGTTTTTTAATTTTTCTTTTTGATTAGATTTAGGACAATAACTTTTTGGTTTTTGTTATGGTATGAGGATGTTTTAAGTATCCTTCTTACTCATTTTATTATTTTCCTAGATGCCTTTTCATCGTGTTTGTACATTGCGATCGCATGACTAATTTTTTCCACTTGCTGATCTATTTCTCTCTAATTTCAGTGCAGAAAACATAAAGATCTCTATTTATGGATGGCAAAGTGCCCTAGTGGGCCATCTGTGAAGTTTTTAGTTAATGCCGGTAATTTTAGATTGTAATCAAATTTTATTACTGGGTGACTGAAATTAGATTGGATTTCTTTATTAAATGTAGTTTTCTTACTTTTCCATTATTGCTTTCAGTGCATACAATGGAAGAATTAAAGCTTACAGGGAACCATCTGAAAGGTTCCCGTCCAATTTTGACATTTTCATCAAATTTTGATAAAGATGTCCACTGGAAACTTCTGAAGGAAATAATTGTTCAGGTATCAATGACAAAGTTTTTTCTTTTGCAATTCATTGTTGAAACTATTGCTCATTCTTACAAGTGGAGTATGTATCAAATGTCAGTTTCCTTGTCTTTCTTCTTCAAATGCATTTTTTGCACATTCCAATGTTCCTTCACTCCAAAGCAAACATGGTATTAAATTAATAAAATATTGTTAACATGACTGTAATCGAATTATCTTCTTTTAGTTTTCTCGATGATAGATAGTTTTTATGAAAAATAAATAAACAAATAAAAGATAGTCATGTATGCGCTTCTTTCGTGTAATATACCATGGCATAAGAATATGGGTTAGTGAATACGTGTGCCTAATTTCACATATGCTGGTGCCTCACTACTATCATTCTCTTTTCATGCTGCCTTTATTTATTTCCTATTTATTTCCGATTTCACATATGCGTATTTACTATGTTGTGAAAAGAATGTAGATCGGATCCTAGTTGCTTATCCAAATAATGACATTTTTGTTTACAAATCCTATGAAGTCTCGTTTTAACATGACATAATTTTAGCTCACCAACGTGTTTTTCCCCCAGATTTTTGGAACTCCGAAGGAGCATCGACATTCTAAACCATACCATGATCATGTATTTATTTTCTCCATTGTTGATGACCACATCTGGTTCCGAAATTACCAGGTATGCTTTGTTTATTTTCTACTTGCTACAGTATTTAATGCTAATCGTGGATAGCATCCAAAAGTACAACCTCCACTTGACACCCAAACAATGCACTGGATGTTGTCTTTCTTTTAAATGTTAGCTAACCGCTTTTTCCAAGAAGTGGGACATGAAAGCAGGAAAATATATTCTACTTTGTGTTAGGCAAAGACACTTGAAAGACTTTTAGGAGTATTATTAGTATAAATATCAAATATTTGTTATGATATTGGAGGTATATTTGTCATTAGCTAAGGGGGTTGTCAATGGATGGTTACAGTTCAGAGAAAGACTAAGAGCTTGGATAGGTACAAGTAAAGAAACAATCCTCTAACTTCAGATTTAATGACCAAGGTTTCATTCAAAGAAGAAATAAACAATAATCAGTTTTTGGAGGAAATGACCAAGGCTTCATTCATATAACAAAAAATGGTGGTGAAGTTACTTGACAGGAGATTATGGCCATTTTATATGTGACTAATGCCGGAACCTGACAACTTTTTGGGGGCATAGATAGTAATGAGAGGGTTTACCACTTCATTGAAGCATTATGGGCTGAAGATGATGCATTAAAAAAATGGAAGAAACGTGATTTGGACGAATATAAATGCCTTACAATCTCTTCAGCAGAATACAAGAACTTTCTCCCTTGCTGAATCAATTACATCTTCATTTTTTCTTTTCTTTTTTTGGTTTCAAAACAAGAAGTTGGTATCTGAAGTTTGGGTGCAATTTTAAAGGTGTAGCATGAGTAGGAAGTACGGGGAGTTCGTATAACCATCAGCACCCCCACCTGAGGGACAATTTGTGTTTTTTGGTGAAGTAAGTTGAAGAATATATGGATAAATGTCAAAAATATCGTCATTAGGATATAAGGGGTACAATTGTCATTAGGTAAGGAATTTGGCATGGTAAAAAATCAATAGGTTGGAGGGGTTTGAGGTTAAGCAGATTTTGGGGAATAGTTTTTGGGGGAGTCCAAGTTTCTCTAGGTAGTTGGGATCTTGTCATTTTTCTTTCTTACGTTCTTGACTTCCATTATTTTTTAGTTCACCGTAGACCATTTTCATATAATTGATCGTTATCCTTTAACTTGCATGTTCACTTTTTGCACCAACTGTTGGTACATTTGTTCTTGTTTGGGGTTTGTGTGGGTGTGATCTATTCTCCCACTGACCATTATTTAATGATATGGTGTTTGTCTTCTTTGTTTGGTGTGATTAGATAGCTGTTCCACATAATGAATCAGATAAAGTCGCCCGAGGAGGACTAGATAAAATGACACTCATTGAGGTTATTAAAATTCCACTTCCTATTTAGTTTATAAATGAGTTTTCACAATTTTCTTGTTGGACTTCAAAGATTTGTATTTTACAGGTTGGCCCACGATTCTGTTTGAATCCAATCAAGATATTTGGTGGAAGTTTTGGAGGCCCTACCCTATATGAGAACCCACTTTATGTATCGCCAAACCAGGTTAGATGATCCAACTTTTTGATCATTTGAGGATTACACTTCTTCGCACTTATCTCTTTTAAACTCGGTTTACAGAATATCTGAGTAACATATGCATTAGTTATCAAGAAGAGAACCACATACAAGATGCATTAGCTATGTTTTCCCAGTTTTCTCTTTAAGTGCATATTTTACAAGAGACTAAAAGTATCGGAATTACAGAAAAAATAATGTCGTTGCAAAGACCAAATATTTGTTATCTTCTTCAATTCAAGGTTCTGTTAGGATACTTCCTAACAACTCGTAAGAACAATAAAAAAATATTAAAGGATAGAAATATAAATTGTAATATCACTGAAGAAACTACAATATAATATAGCCTTTTGAGAGGGCTACTCTCTCCCAAAATTTCTTAAAGGAAATCCCACAAAAATTTTCACACGTTGCTCCCAACCCTCTCAAAAGCTCTAACAAACTTACTAACTATTTATTAATATGTCTCTTCTAATAATCATGCTAATATTTTACTAATAATCCTACTGTATCTCTAACTATGGCTCTCACGGGTTGTTTGAGATTTCCTTTTGTGTAACTATAGTCTCACTAATCTTATGACCAACCGGGAGTGTTTTTTCAATTCATAGGATCTCGTAGTTTGTAAATTTTGTCATATCAATAAAATGTTTCTCCCTTTCCTTAAAAAAGGAAAAAGAGGAAGAAAAAAAAAACCCTCCCACATGCCCCCCCCCCCATACTTGCTGATGTTTTTTCATTTCTCTTCCTAGATTCGAGCGTTGGAGAAGAAGCAAAAGGCTGGGAAATACTCGAAGAAAGTCAAAGCAAAAACAAGGAGGAAGATGCACGAGTTATCAAATCCATTGGAACCAGACGAGTTTGCTGATATGTGGAAGGAATAGTATTTGGATGGACTTAATTTTATCTAAAGACTCAGAAATCAGAATTCCTTGCCTCCAATGAAATGGGATTTTGTTCTGTAATACTGTTATCTGTAGTGCAAATTTTGTCCTAACTTTTATTTAAACCTCGAGGTATATTTCTCTATTTTCAATGTATCTCTTGGTTAAATACTTGAGTTTAGGTATGATTTTACAAATTCAAAGTGCATCTCATACTTTTGACTTTATGTTACCATTTTATTTTATTTTGTATGGATGACTCTTTTCAAAGTTCTTTTATGATTGATGACCCGCCA

mRNA sequence

AAAAAAAAGAAACACTCACTCTGTGCCGCTTCTCTTTCTCTGTCTGATCAGCACCTTCGTCCTCTTCATCCAGCCACCCGCAGGCAGGCGCCGCCGCTTCATCGCCGATCATCTCCGCCAGTCGACGTTTCTGGAAAGCTTTTGAGTTCTCTTCGTTTCTCTTTTCCACTCACTCTCGGTTTCTCTTCTCCTCACAGCACCGCCGTTCACCGCCCTCAGTGGACGCCGCTCGCCGCTGCCGTCTAGTGGCCAGTCACCCCCGCTGGTCGTGATCGCCACTGCCGCCGGATTCGTACAGCGGACGGGTCGGCAAAGGACTTTTAAGTTGGGTCAAACTAGTTAACAAAGTCTAGTATTTCTGAAGGGGTGATATTCTCAATGGCAAAGAAGAGGAAGCATAGTGAGACTTTGCCGATAGTATCGGTTAAGAAGGACGACAATGCTCCTGAGAGACCCAAGCGGACGCTCATGGGTTGGAAAGACAAAGAAGTGGCAAAAGAGTGTGAAGCTGGTTCTGATCATGCTATTTTTCGGAATAAAGAAAAGGTTCTCGTCACTTGTTCCCGCCGAATCAATTTTAGGTATCGACATTTGATGTTGAATATAGTATCACTTTTGCCACATTGTAAGAAGGATAACAAGGTAGAGTCGAGGTCCAGCAAGGGTGCAACACTGAATGAGTTGGTTGAGCTCAAGGGTTGTTCTTCCAGCCTATTTTTTGAGTGCAGAAAACATAAAGATCTCTATTTATGGATGGCAAAGTGCCCTAGTGGGCCATCTGTGAAGTTTTTAGTTAATGCCGTGCATACAATGGAAGAATTAAAGCTTACAGGGAACCATCTGAAAGGTTCCCGTCCAATTTTGACATTTTCATCAAATTTTGATAAAGATGTCCACTGGAAACTTCTGAAGGAAATAATTGTTCAGATTTTTGGAACTCCGAAGGAGCATCGACATTCTAAACCATACCATGATCATGTATTTATTTTCTCCATTGTTGATGACCACATCTGGTTCCGAAATTACCAGATAGCTGTTCCACATAATGAATCAGATAAAGTCGCCCGAGGAGGACTAGATAAAATGACACTCATTGAGGTTGGCCCACGATTCTGTTTGAATCCAATCAAGATATTTGGTGGAAGTTTTGGAGGCCCTACCCTATATGAGAACCCACTTTATGTATCGCCAAACCAGATTCGAGCGTTGGAGAAGAAGCAAAAGGCTGGGAAATACTCGAAGAAAGTCAAAGCAAAAACAAGGAGGAAGATGCACGAGTTATCAAATCCATTGGAACCAGACGAGTTTGCTGATATGTGGAAGGAATAGTATTTGGATGGACTTAATTTTATCTAAAGACTCAGAAATCAGAATTCCTTGCCTCCAATGAAATGGGATTTTGTTCTGTAATACTGTTATCTGTAGTGCAAATTTTGTCCTAACTTTTATTTAAACCTCGAGGTATATTTCTCTATTTTCAATGTATCTCTTGGTTAAATACTTGAGTTTAGGTATGATTTTACAAATTCAAAGTGCATCTCATACTTTTGACTTTATGTTACCATTTTATTTTATTTTGTATGGATGACTCTTTTCAAAGTTCTTTTATGATTGATGACCCGCCA

Coding sequence (CDS)

ATGGCAAAGAAGAGGAAGCATAGTGAGACTTTGCCGATAGTATCGGTTAAGAAGGACGACAATGCTCCTGAGAGACCCAAGCGGACGCTCATGGGTTGGAAAGACAAAGAAGTGGCAAAAGAGTGTGAAGCTGGTTCTGATCATGCTATTTTTCGGAATAAAGAAAAGGTTCTCGTCACTTGTTCCCGCCGAATCAATTTTAGGTATCGACATTTGATGTTGAATATAGTATCACTTTTGCCACATTGTAAGAAGGATAACAAGGTAGAGTCGAGGTCCAGCAAGGGTGCAACACTGAATGAGTTGGTTGAGCTCAAGGGTTGTTCTTCCAGCCTATTTTTTGAGTGCAGAAAACATAAAGATCTCTATTTATGGATGGCAAAGTGCCCTAGTGGGCCATCTGTGAAGTTTTTAGTTAATGCCGTGCATACAATGGAAGAATTAAAGCTTACAGGGAACCATCTGAAAGGTTCCCGTCCAATTTTGACATTTTCATCAAATTTTGATAAAGATGTCCACTGGAAACTTCTGAAGGAAATAATTGTTCAGATTTTTGGAACTCCGAAGGAGCATCGACATTCTAAACCATACCATGATCATGTATTTATTTTCTCCATTGTTGATGACCACATCTGGTTCCGAAATTACCAGATAGCTGTTCCACATAATGAATCAGATAAAGTCGCCCGAGGAGGACTAGATAAAATGACACTCATTGAGGTTGGCCCACGATTCTGTTTGAATCCAATCAAGATATTTGGTGGAAGTTTTGGAGGCCCTACCCTATATGAGAACCCACTTTATGTATCGCCAAACCAGATTCGAGCGTTGGAGAAGAAGCAAAAGGCTGGGAAATACTCGAAGAAAGTCAAAGCAAAAACAAGGAGGAAGATGCACGAGTTATCAAATCCATTGGAACCAGACGAGTTTGCTGATATGTGGAAGGAATAG

Protein sequence

MAKKRKHSETLPIVSVKKDDNAPERPKRTLMGWKDKEVAKECEAGSDHAIFRNKEKVLVTCSRRINFRYRHLMLNIVSLLPHCKKDNKVESRSSKGATLNELVELKGCSSSLFFECRKHKDLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEIIVQIFGTPKEHRHSKPYHDHVFIFSIVDDHIWFRNYQIAVPHNESDKVARGGLDKMTLIEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRKMHELSNPLEPDEFADMWKE

Homology

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BLAST of Lsi06G001470 vs. Swiss-Prot
Match: BRX1_RAT (Ribosome biogenesis protein BRX1 homolog OS=Rattus norvegicus GN=Brix1 PE=2 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 1.1e-66
Identity = 143/322 (44.41%), Postives = 193/322 (59.94%), Query Frame = 1


Query: 2   AKKRKHSETLPIVSVKKDDNAPERPKRTLMGWKDKEVAKECEAGSDH-------AIFRNK 61
           A KRK    L + + K   N  +  +      K  +VAKE E   D          ++NK
Sbjct: 3   ATKRKRRGDLEVQAKKPKKNRKDAGQPA----KQADVAKEAEEEKDRIPGPVCKGKWKNK 62

Query: 62  EKVLVTCSRRINFRYRHLMLNIVSLLPHCKKDNKVESRSSKGATLNELVELKGCSSSLFF 121
           E++L+  SR INFR RHLM ++  L+PH K D K++ R  K   +NE+ E+K C+  ++F
Sbjct: 63  ERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMD-RKDKLFVINEVCEMKNCNKCIYF 122

Query: 122 ECRKHKDLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDKDVHW 181
           E +K +DLY+W++  P GPS KFLV  +HT+ ELK+TGN LKGSRP+L+F   FD   H+
Sbjct: 123 EAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDDLPHY 182

Query: 182 KLLKEIIVQIFGTPKEHRHSKPYHDHVFIFSIVDDHIWFRNYQIAVPHNESDKVARGGLD 241
            LLKE ++QIF TP+ H  S+P+ DHVF F+I+D+ IWFRN+QI     E D        
Sbjct: 183 ALLKEFLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQII----EED-------- 242

Query: 242 KMTLIEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKK--VKA 301
              L+E+GPRF LN IKIF GSFGGPTLYENP Y SPN  R + +   A KY +K  VK 
Sbjct: 243 -AALVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHRRVVRSITAAKYREKQQVKD 302

Query: 302 KTRRKMHELSNPLEPDEFADMW 315
             + +  E    L  D  AD++
Sbjct: 303 VQKSRKKEPKTILPHDPTADVF 306

[Close]

BLAST of Lsi06G001470 vs. Swiss-Prot
Match: BRX1_HUMAN (Ribosome biogenesis protein BRX1 homolog OS=Homo sapiens GN=BRIX1 PE=1 SV=2)

HSP 1 Score: 253.4 bits (646), Expect = 3.2e-66
Identity = 129/266 (48.50%), Postives = 177/266 (66.54%), Query Frame = 1


Query: 51  FRNKEKVLVTCSRRINFRYRHLMLNIVSLLPHCKKDNKVESRSSKGATLNELVELKGCSS 110
           ++NKE++L+  SR INFR RHLM ++  L+PH K D K++ R  K   +NE+ E+K C+ 
Sbjct: 56  WKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMD-RKDKLFVINEVCEMKNCNK 115

Query: 111 SLFFECRKHKDLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDK 170
            ++FE +K +DLY+W++  P GPS KFLV  +HT+ ELK+TGN LKGSRP+L+F   FD+
Sbjct: 116 CIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDE 175

Query: 171 DVHWKLLKEIIVQIFGTPKEHRHSKPYHDHVFIFSIVDDHIWFRNYQIAVPHNESDKVAR 230
             H+ LLKE+++QIF TP+ H  S+P+ DHVF F+I+D+ IWFRN+QI     E D    
Sbjct: 176 LPHYALLKELLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQII----EED---- 235

Query: 231 GGLDKMTLIEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKV 290
                  L+E+GPRF LN IKIF GSFGGPTLYENP Y SPN  R + +   A KY +K 
Sbjct: 236 -----AALVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHRRVIRSITAAKYREKQ 295

Query: 291 KAKTRRKMH--ELSNPLEPDEFADMW 315
           + K  +K+   E    L  D  AD++
Sbjct: 296 QVKDVQKLRKKEPKTLLPHDPTADVF 307

[Close]

BLAST of Lsi06G001470 vs. Swiss-Prot
Match: BRX1_BOVIN (Ribosome biogenesis protein BRX1 homolog OS=Bos taurus GN=BRIX1 PE=2 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 3.2e-66
Identity = 129/266 (48.50%), Postives = 177/266 (66.54%), Query Frame = 1


Query: 51  FRNKEKVLVTCSRRINFRYRHLMLNIVSLLPHCKKDNKVESRSSKGATLNELVELKGCSS 110
           ++NKE++L+  SR INFR RHLM ++  L+PH K D K++ R  K   +NE+ E+K C+ 
Sbjct: 56  WKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMD-RKDKLFVINEVCEMKNCNK 115

Query: 111 SLFFECRKHKDLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDK 170
            ++FE +K +DLY+W++  P GPS KFLV  +HT+ ELK+TGN LKGSRP+L+F   FD+
Sbjct: 116 CIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDE 175

Query: 171 DVHWKLLKEIIVQIFGTPKEHRHSKPYHDHVFIFSIVDDHIWFRNYQIAVPHNESDKVAR 230
             H+ LLKE+++QIF TP+ H  S+P+ DHVF F+I+D+ IWFRN+QI     E D    
Sbjct: 176 LPHYALLKELLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQII----EED---- 235

Query: 231 GGLDKMTLIEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKV 290
                  L+E+GPRF LN IKIF GSFGGPTLYENP Y SPN  R + +   A KY +K 
Sbjct: 236 -----AALVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHRRVIRSITAAKYREKQ 295

Query: 291 KAKTRRKMH--ELSNPLEPDEFADMW 315
           + K  +K+   E    L  D  AD++
Sbjct: 296 QVKDVQKLRKKEPKTILPHDPTADVF 307

[Close]

BLAST of Lsi06G001470 vs. Swiss-Prot
Match: BRX1_XENLA (Ribosome biogenesis protein BRX1 homolog OS=Xenopus laevis GN=brix1 PE=2 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 4.1e-66
Identity = 127/263 (48.29%), Postives = 176/263 (66.92%), Query Frame = 1


Query: 51  FRNKEKVLVTCSRRINFRYRHLMLNIVSLLPHCKKDNKVESRSSKGATLNELVELKGCSS 110
           ++NKE+VL+  SR INFR RHLM ++ SL+PH + + K++ R  K   +NE+ E+K C+ 
Sbjct: 49  WKNKERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMD-RKDKLFVVNEVCEMKNCNK 108

Query: 111 SLFFECRKHKDLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDK 170
            ++FE +K +DLY+W++  P GPS KFLV  +HT+ ELK++GN LKGSRPIL+F   FD+
Sbjct: 109 CIYFEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAFDR 168

Query: 171 DVHWKLLKEIIVQIFGTPKEHRHSKPYHDHVFIFSIVDDHIWFRNYQIAVPHNESDKVAR 230
           +  + LLKE++ QIFGTP+ H  S+P+ DH+F FSI D+ IWFRNYQI     E D    
Sbjct: 169 EPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQII----EED---- 228

Query: 231 GGLDKMTLIEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKV 290
                  L+E+GPRF LN IKIF GSFGGPTLYENP Y SPN  R + +   A K  +K 
Sbjct: 229 -----AALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRMIRLATAAKVKEKQ 288

Query: 291 KAKTRRKMHELSN----PLEPDE 310
           + K  +K+ +  +    P++P E
Sbjct: 289 QVKEVQKLKKEEDRPVIPVDPTE 297

[Close]

BLAST of Lsi06G001470 vs. Swiss-Prot
Match: BRX1_PONAB (Ribosome biogenesis protein BRX1 homolog OS=Pongo abelii GN=BRIX1 PE=2 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 9.2e-66
Identity = 128/266 (48.12%), Postives = 176/266 (66.17%), Query Frame = 1


Query: 51  FRNKEKVLVTCSRRINFRYRHLMLNIVSLLPHCKKDNKVESRSSKGATLNELVELKGCSS 110
           ++NKE++L+  SR INFR RHLM ++  L+PH K D K++ R  K   +NE+ E+K C+ 
Sbjct: 56  WKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMD-RKDKLFVINEVCEMKNCNK 115

Query: 111 SLFFECRKHKDLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDK 170
            ++FE +K +DLY+W++  P GPS KFLV  +HT+ ELK+TGN LKGSRP+L+F   FD+
Sbjct: 116 CIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDE 175

Query: 171 DVHWKLLKEIIVQIFGTPKEHRHSKPYHDHVFIFSIVDDHIWFRNYQIAVPHNESDKVAR 230
             H+ LLKE+++QI  TP+ H  S+P+ DHVF F+I+D+ IWFRN+QI     E D    
Sbjct: 176 LPHYALLKELLIQILSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQII----EED---- 235

Query: 231 GGLDKMTLIEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKV 290
                  L+E+GPRF LN IKIF GSFGGPTLYENP Y SPN  R + +   A KY +K 
Sbjct: 236 -----AALVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHRRVTRSITAAKYREKQ 295

Query: 291 KAKTRRKMH--ELSNPLEPDEFADMW 315
           + K  +K+   E    L  D  AD++
Sbjct: 296 QVKDVQKLRKKEPKTLLPHDPTADVF 307

[Close]

BLAST of Lsi06G001470 vs. TrEMBL
Match: A0A0B0NEE6_GOSAR (Ribosome biogenesis BRX1 OS=Gossypium arboreum GN=F383_18642 PE=4 SV=1)

HSP 1 Score: 572.0 bits (1473), Expect = 4.5e-160
Identity = 269/318 (84.59%), Postives = 296/318 (93.08%), Query Frame = 1


Query: 1   MAKKRKHSETLPIVSVKKDDNAPERPKRTLMGWKDKE-VAKECEAGSDHA-IFRNKEKVL 60
           M KKRKHSET      KKD+ APERPKR+L GWKDKE V ++ E+ +D   +FRNKEKV+
Sbjct: 1   MGKKRKHSETQTAEPKKKDEAAPERPKRSLFGWKDKEEVQQQTESNTDPPQVFRNKEKVM 60

Query: 61  VTCSRRINFRYRHLMLNIVSLLPHCKKDNKVESRSSKGATLNELVELKGCSSSLFFECRK 120
           VTCSRRIN+RYRHLMLN+VSLLPHCKKDNKVESRSSKGATLNEL+EL+GCSS+LFFECRK
Sbjct: 61  VTCSRRINYRYRHLMLNMVSLLPHCKKDNKVESRSSKGATLNELIELRGCSSALFFECRK 120

Query: 121 HKDLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLK 180
           H+DLYLWMA+CP+GPSVKFLVNAVHTMEELKLTGNHLKGSRP+LTFSSNF+KD HWKLLK
Sbjct: 121 HQDLYLWMARCPNGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFEKDAHWKLLK 180

Query: 181 EIIVQIFGTPKEHRHSKPYHDHVFIFSIVDDHIWFRNYQIAVPHNESDKVARGGLDKMTL 240
           E+I+QIFGTPKEHR SKPYHDHVF+FSI DDHIWFRNYQI+VPHNESDK+ RGGLDKMTL
Sbjct: 181 EMIIQIFGTPKEHRKSKPYHDHVFVFSIADDHIWFRNYQISVPHNESDKMVRGGLDKMTL 240

Query: 241 IEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRKM 300
           +EVGPRFCLNPIKIF GSFGGPTLYENP YVSPNQIRALEK+QKAGKY+KKVKAKTRRKM
Sbjct: 241 VEVGPRFCLNPIKIFAGSFGGPTLYENPFYVSPNQIRALEKRQKAGKYAKKVKAKTRRKM 300

Query: 301 HELSNPLEPDEFADMWKE 317
           HELSNPLEPDEFADMW+E
Sbjct: 301 HELSNPLEPDEFADMWRE 318

[Close]

BLAST of Lsi06G001470 vs. TrEMBL
Match: A0A0D2PI01_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G319600 PE=4 SV=1)

HSP 1 Score: 572.0 bits (1473), Expect = 4.5e-160
Identity = 269/318 (84.59%), Postives = 296/318 (93.08%), Query Frame = 1


Query: 1   MAKKRKHSETLPIVSVKKDDNAPERPKRTLMGWKDKE-VAKECEAGSDHA-IFRNKEKVL 60
           M KKRKHSET      KKD+ APERPKR+L GWKDKE V ++ E+ +D   +FRNKEKV+
Sbjct: 1   MGKKRKHSETQTAEPKKKDEAAPERPKRSLFGWKDKEEVQQQTESNTDPPQVFRNKEKVM 60

Query: 61  VTCSRRINFRYRHLMLNIVSLLPHCKKDNKVESRSSKGATLNELVELKGCSSSLFFECRK 120
           VTCSRRIN+RYRHLMLN+VSLLPHCKKDNKVESRSSKGATLNEL+EL+GCSS+LFFECRK
Sbjct: 61  VTCSRRINYRYRHLMLNMVSLLPHCKKDNKVESRSSKGATLNELIELRGCSSALFFECRK 120

Query: 121 HKDLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLK 180
           H+DLYLWMA+CP+GPSVKFLVNAVHTMEELKLTGNHLKGSRP+LTFSSNF+KD HWKLLK
Sbjct: 121 HQDLYLWMARCPNGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFEKDAHWKLLK 180

Query: 181 EIIVQIFGTPKEHRHSKPYHDHVFIFSIVDDHIWFRNYQIAVPHNESDKVARGGLDKMTL 240
           E+I+QIFGTPKEHR SKPYHDHVF+FSI DDHIWFRNYQI+VPHNESDK+ RGGLDKMTL
Sbjct: 181 EMIIQIFGTPKEHRKSKPYHDHVFVFSIADDHIWFRNYQISVPHNESDKMVRGGLDKMTL 240

Query: 241 IEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRKM 300
           +EVGPRFCLNPIKIF GSFGGPTLYENP YVSPNQIRALEK+QKAGKY+KKVKAKTRRKM
Sbjct: 241 VEVGPRFCLNPIKIFAGSFGGPTLYENPFYVSPNQIRALEKRQKAGKYAKKVKAKTRRKM 300

Query: 301 HELSNPLEPDEFADMWKE 317
           HELSNPLEPDEFADMW+E
Sbjct: 301 HELSNPLEPDEFADMWRE 318

[Close]

BLAST of Lsi06G001470 vs. TrEMBL
Match: A0A061F737_THECC (Ribosome biogenesis protein brix, putative OS=Theobroma cacao GN=TCM_031378 PE=4 SV=1)

HSP 1 Score: 571.2 bits (1471), Expect = 7.6e-160
Identity = 271/319 (84.95%), Postives = 294/319 (92.16%), Query Frame = 1


Query: 1   MAKKRKHSETLPIVSVKKDDNAPERPKRTLMGWKDKE-VAKECEAGSDHA--IFRNKEKV 60
           M KKRK SET       KD+ APERPKRTL+GWKDKE VAK+ E+  D +  +FRNKEKV
Sbjct: 1   MGKKRKQSETQTAEPTNKDEGAPERPKRTLVGWKDKEEVAKQTESNPDSSSQVFRNKEKV 60

Query: 61  LVTCSRRINFRYRHLMLNIVSLLPHCKKDNKVESRSSKGATLNELVELKGCSSSLFFECR 120
           +VTCSRRIN+RYRHLMLN+VSLLPHCKKDNKVES+SSKGATLNEL+EL GCSS LFFECR
Sbjct: 61  MVTCSRRINYRYRHLMLNMVSLLPHCKKDNKVESKSSKGATLNELIELSGCSSCLFFECR 120

Query: 121 KHKDLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDKDVHWKLL 180
           KH+DLYLWMAK PSGPSVKFLVNAVHTMEELKLTGNHLKGSRP+LTFS NF+KD HWKLL
Sbjct: 121 KHQDLYLWMAKSPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSGNFEKDAHWKLL 180

Query: 181 KEIIVQIFGTPKEHRHSKPYHDHVFIFSIVDDHIWFRNYQIAVPHNESDKVARGGLDKMT 240
           KE+I+QIFGTPKEHR SKPYHDHVF+FSIVDDHIWFRNYQI+VPHNESDK+ RGGLDKMT
Sbjct: 181 KEMIMQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKMVRGGLDKMT 240

Query: 241 LIEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRK 300
           L+EVGPRFCLNPIKIFGGSFGGPTLYENP YVSPNQIRALEK+QKAGKY+KKVKAKTRRK
Sbjct: 241 LVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKRQKAGKYAKKVKAKTRRK 300

Query: 301 MHELSNPLEPDEFADMWKE 317
           MHELSNPLEPDEFADMW+E
Sbjct: 301 MHELSNPLEPDEFADMWRE 319

[Close]

BLAST of Lsi06G001470 vs. TrEMBL
Match: B9HZX2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s12280g PE=4 SV=1)

HSP 1 Score: 567.8 bits (1462), Expect = 8.4e-159
Identity = 269/317 (84.86%), Postives = 292/317 (92.11%), Query Frame = 1


Query: 1   MAKKRKHSETLPIVSVKKDDNAPERPKRTLMGWKDKEVAKECEAGSDH-AIFRNKEKVLV 60
           M KKRKHSET  I   KKD++  ERPKRTL+GWKDK   KE E+   H   FRNKEKVLV
Sbjct: 1   MGKKRKHSETQVIEPAKKDESETERPKRTLLGWKDKPEEKETESLPPHQGGFRNKEKVLV 60

Query: 61  TCSRRINFRYRHLMLNIVSLLPHCKKDNKVESRSSKGATLNELVELKGCSSSLFFECRKH 120
           TCSRRIN+RYRHLMLN+VSLLPHCKKD+KVES SSKGATLNELVELK CSSSLFFECRKH
Sbjct: 61  TCSRRINYRYRHLMLNLVSLLPHCKKDSKVESTSSKGATLNELVELKNCSSSLFFECRKH 120

Query: 121 KDLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKE 180
           KDLYLWM KCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRP+LTFS+NFDKD HWKLLKE
Sbjct: 121 KDLYLWMVKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSANFDKDAHWKLLKE 180

Query: 181 IIVQIFGTPKEHRHSKPYHDHVFIFSIVDDHIWFRNYQIAVPHNESDKVARGGLDKMTLI 240
           +I+QIFG PK+HR SKP++DHVF+FSIVDDHIWFRNYQI+VPHNE+DK+ARGGLDKMTL+
Sbjct: 181 MIIQIFGIPKDHRKSKPFYDHVFVFSIVDDHIWFRNYQISVPHNETDKMARGGLDKMTLV 240

Query: 241 EVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRKMH 300
           EVGPRFCLNPIKIFGGSFGGPTLYENP ++SPNQIRALEKKQKAGK++KKVKAKTRRKMH
Sbjct: 241 EVGPRFCLNPIKIFGGSFGGPTLYENPFFISPNQIRALEKKQKAGKFAKKVKAKTRRKMH 300

Query: 301 ELSNPLEPDEFADMWKE 317
           ELSNPLEPDEFADMWKE
Sbjct: 301 ELSNPLEPDEFADMWKE 317

[Close]

BLAST of Lsi06G001470 vs. TrEMBL
Match: B9N1J9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s41350g PE=4 SV=1)

HSP 1 Score: 566.6 bits (1459), Expect = 1.9e-158
Identity = 270/317 (85.17%), Postives = 290/317 (91.48%), Query Frame = 1


Query: 1   MAKKRKHSETLPIVSVKKDDNAPERPKRTLMGWKDKEVAKECE-AGSDHAIFRNKEKVLV 60
           M KKRKH ET  I   KKD+ APERPKRTL+GWKDK   KE E        FRNKEKVLV
Sbjct: 1   MGKKRKHVETQVIEPAKKDEGAPERPKRTLLGWKDKPEVKETEFIPPQQGGFRNKEKVLV 60

Query: 61  TCSRRINFRYRHLMLNIVSLLPHCKKDNKVESRSSKGATLNELVELKGCSSSLFFECRKH 120
           TCSRRINFRYRHLMLN+VSLLPHCKKD+KVES S+KGATLNELVELK  SSSLFFECRKH
Sbjct: 61  TCSRRINFRYRHLMLNLVSLLPHCKKDSKVESTSTKGATLNELVELKNGSSSLFFECRKH 120

Query: 121 KDLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKE 180
           KDLYLWM KCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRP+LTFS+NFDKD HWKLLKE
Sbjct: 121 KDLYLWMVKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSANFDKDAHWKLLKE 180

Query: 181 IIVQIFGTPKEHRHSKPYHDHVFIFSIVDDHIWFRNYQIAVPHNESDKVARGGLDKMTLI 240
           +I+QIFGTPK+HR SKP++DHVF+FSIVDDHIWFRNYQI+VPHNE+DK+ARGGLDKMTL+
Sbjct: 181 MIIQIFGTPKDHRKSKPFYDHVFVFSIVDDHIWFRNYQISVPHNETDKIARGGLDKMTLV 240

Query: 241 EVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRKMH 300
           EVGPRFCLNPIKIFGGSFGGPTLYENP +VSPNQIRALEKKQKAGK++KKVKAKTRRKMH
Sbjct: 241 EVGPRFCLNPIKIFGGSFGGPTLYENPFFVSPNQIRALEKKQKAGKFAKKVKAKTRRKMH 300

Query: 301 ELSNPLEPDEFADMWKE 317
           ELSNPLEPDEFADMWKE
Sbjct: 301 ELSNPLEPDEFADMWKE 317

[Close]

BLAST of Lsi06G001470 vs. TAIR10
Match: AT3G15460.1 (AT3G15460.1 Ribosomal RNA processing Brix domain protein)

HSP 1 Score: 540.0 bits (1390), Expect = 9.5e-154
Identity = 254/316 (80.38%), Postives = 283/316 (89.56%), Query Frame = 1


Query: 1   MAKKRKHSETLPIVSVKKDDNAPERPKRTLMGWKDKEVAKECEAGSDHAIFRNKEKVLVT 60
           M +KRKHSET+    VK  D+APERP+RTL+GWKDK+   E    +  ++FRNKEKVLVT
Sbjct: 1   MGRKRKHSETVTAAPVK--DSAPERPQRTLLGWKDKKEDAENSKPAYASVFRNKEKVLVT 60

Query: 61  CSRRINFRYRHLMLNIVSLLPHCKKDNKVESRSSKGATLNELVELKGCSSSLFFECRKHK 120
           CSRRINFRYRHLMLN+VSLLPHCKKD+KVE++SS+GATLNEL+ELKG SS LFFECRKHK
Sbjct: 61  CSRRINFRYRHLMLNMVSLLPHCKKDSKVEAKSSRGATLNELIELKGSSSCLFFECRKHK 120

Query: 121 DLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEI 180
           DLY+WM K P GPSVKFLVNAVHTMEELKLTGNHLKGSRP+LTFSSNF+ D HWKLLKE+
Sbjct: 121 DLYMWMVKSPGGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFENDAHWKLLKEM 180

Query: 181 IVQIFGTPKEHRHSKPYHDHVFIFSIVDDHIWFRNYQIAVPHNESDKVARGGLDKMTLIE 240
           + QIFG P+ HR SKPYHDHVF+FSIVDDHIWFRNYQI+VPHNESDK+ARG LDKMTLIE
Sbjct: 181 LTQIFGIPEGHRKSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKIARGDLDKMTLIE 240

Query: 241 VGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRKMHE 300
           VGPRFCLNPIKIFGGSFGG TLYENP YVSPNQIRALEK+ KAGK++KK+KAKTRRKMHE
Sbjct: 241 VGPRFCLNPIKIFGGSFGGTTLYENPFYVSPNQIRALEKRNKAGKFAKKIKAKTRRKMHE 300

Query: 301 LSNPLEPDEFADMWKE 317
           LSNPLEPDEF DMW +
Sbjct: 301 LSNPLEPDEFTDMWND 314

[Close]

BLAST of Lsi06G001470 vs. TAIR10
Match: AT1G52930.1 (AT1G52930.1 Ribosomal RNA processing Brix domain protein)

HSP 1 Score: 534.6 bits (1376), Expect = 4.0e-152
Identity = 256/321 (79.75%), Postives = 285/321 (88.79%), Query Frame = 1


Query: 1   MAKKRKHSETLPIVSVKKDDN-APERPKRTLMGWKDKEVAKECEAGSDHAI----FRNKE 60
           M +KRKHSET     VKK D  AP+RPKRTL+GWKDK    E EA    A+    F+NKE
Sbjct: 1   MGRKRKHSETEAPAPVKKSDEPAPDRPKRTLLGWKDKS---EGEAEKAKALTSSGFKNKE 60

Query: 61  KVLVTCSRRINFRYRHLMLNIVSLLPHCKKDNKVESRSSKGATLNELVELKGCSSSLFFE 120
           KVLVTCSRRI+FRYR LMLNIVSLLPHCKKD+KVE++SSKGATLNEL+ELK  +S LFFE
Sbjct: 61  KVLVTCSRRISFRYRSLMLNIVSLLPHCKKDSKVEAKSSKGATLNELIELKNSNSCLFFE 120

Query: 121 CRKHKDLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDKDVHWK 180
           CRKHKDLY+WM K P+GPSVKFLV AVH MEE+KLTGNHLKGSRP+LTFSSNFDKD HWK
Sbjct: 121 CRKHKDLYMWMVKSPNGPSVKFLVKAVHAMEEMKLTGNHLKGSRPLLTFSSNFDKDAHWK 180

Query: 181 LLKEIIVQIFGTPKEHRHSKPYHDHVFIFSIVDDHIWFRNYQIAVPHNESDKVARGGLDK 240
           LLKE++ Q+FG PKEHR SKPYHDHVF+FSIVD+HIWFRNYQI+VPHNESDK+A+GGLDK
Sbjct: 181 LLKEMLTQVFGIPKEHRKSKPYHDHVFVFSIVDEHIWFRNYQISVPHNESDKIAKGGLDK 240

Query: 241 MTLIEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTR 300
           MTLIEVGPRFCLNPIKIF GSFGGPTLYENPLYVSPNQIRALEK+ KAGK++KK+KAKTR
Sbjct: 241 MTLIEVGPRFCLNPIKIFAGSFGGPTLYENPLYVSPNQIRALEKRNKAGKFAKKIKAKTR 300

Query: 301 RKMHELSNPLEPDEFADMWKE 317
           +KMHELSNPLEPDEFADMWK+
Sbjct: 301 KKMHELSNPLEPDEFADMWKD 318

[Close]

BLAST of Lsi06G001470 vs. NCBI nr
Match: gi|659099573|ref|XP_008450669.1| (PREDICTED: ribosome biogenesis protein BRX1-like [Cucumis melo])

HSP 1 Score: 636.0 bits (1639), Expect = 3.6e-179
Identity = 303/316 (95.89%), Postives = 312/316 (98.73%), Query Frame = 1


Query: 1   MAKKRKHSETLPIVSVKKDDNAPERPKRTLMGWKDKEVAKECEAGSDHAIFRNKEKVLVT 60
           MAKKRKHSET+P VSVKKD+NA ERPKRTLMGWKDKEV K+ EAGSDHA+FRNKEKVLVT
Sbjct: 1   MAKKRKHSETVPTVSVKKDENALERPKRTLMGWKDKEVTKKSEAGSDHAVFRNKEKVLVT 60

Query: 61  CSRRINFRYRHLMLNIVSLLPHCKKDNKVESRSSKGATLNELVELKGCSSSLFFECRKHK 120
           CSRRINFRYRHLMLN+VSLLPHCKKDNKVESRSSKGATLNELVELKGCSSSLFFECRKHK
Sbjct: 61  CSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSSKGATLNELVELKGCSSSLFFECRKHK 120

Query: 121 DLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEI 180
           DLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKE+
Sbjct: 121 DLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEM 180

Query: 181 IVQIFGTPKEHRHSKPYHDHVFIFSIVDDHIWFRNYQIAVPHNESDKVARGGLDKMTLIE 240
           I+QIFGTPKEHRHSKPYHDHVF+FSIVDDHIWFRNYQI+VPHNESDKVARGGLDKMTLIE
Sbjct: 181 IIQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKVARGGLDKMTLIE 240

Query: 241 VGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRKMHE 300
           VGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRKMHE
Sbjct: 241 VGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRKMHE 300

Query: 301 LSNPLEPDEFADMWKE 317
           LSNPLEPDEFADMWKE
Sbjct: 301 LSNPLEPDEFADMWKE 316

[Close]

BLAST of Lsi06G001470 vs. NCBI nr
Match: gi|778662534|ref|XP_011659901.1| (PREDICTED: LOW QUALITY PROTEIN: ribosome biogenesis protein BRX1-like [Cucumis sativus])

HSP 1 Score: 620.9 bits (1600), Expect = 1.2e-174
Identity = 297/316 (93.99%), Postives = 308/316 (97.47%), Query Frame = 1


Query: 1   MAKKRKHSETLPIVSVKKDDNAPERPKRTLMGWKDKEVAKECEAGSDHAIFRNKEKVLVT 60
           MAKKRKHSE+LP VSVKKDD+APERPKRTLMGWKDK+V KE E GSDHA+FRNKEKVL+T
Sbjct: 1   MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKEIEVGSDHAVFRNKEKVLIT 60

Query: 61  CSRRINFRYRHLMLNIVSLLPHCKKDNKVESRSSKGATLNELVELKGCSSSLFFECRKHK 120
           CSRRINFRY HLMLN+VSLLPHCKKDNKVE RSSKGATLNELVELKGCSSSLFFECRKHK
Sbjct: 61  CSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSSKGATLNELVELKGCSSSLFFECRKHK 120

Query: 121 DLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEI 180
           DLYL MAKCPSGPSVKFLVNA+HTMEELKLTGNHLKGSRPILTFSSNFDKDVH KLLKE+
Sbjct: 121 DLYLCMAKCPSGPSVKFLVNAMHTMEELKLTGNHLKGSRPILTFSSNFDKDVHXKLLKEM 180

Query: 181 IVQIFGTPKEHRHSKPYHDHVFIFSIVDDHIWFRNYQIAVPHNESDKVARGGLDKMTLIE 240
           I+QIFGTPKEHRHSKPYHDHVF+FSIVDDHIWFRNYQI+VPHNESDKVARGGLDKMTLIE
Sbjct: 181 IIQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKVARGGLDKMTLIE 240

Query: 241 VGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRKMHE 300
           VGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRKMHE
Sbjct: 241 VGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRKMHE 300

Query: 301 LSNPLEPDEFADMWKE 317
           LSNPLEPDEFADMWKE
Sbjct: 301 LSNPLEPDEFADMWKE 316

[Close]

BLAST of Lsi06G001470 vs. NCBI nr
Match: gi|823198009|ref|XP_012434459.1| (PREDICTED: ribosome biogenesis protein BRX1 [Gossypium raimondii])

HSP 1 Score: 572.0 bits (1473), Expect = 6.4e-160
Identity = 269/318 (84.59%), Postives = 296/318 (93.08%), Query Frame = 1


Query: 1   MAKKRKHSETLPIVSVKKDDNAPERPKRTLMGWKDKE-VAKECEAGSDHA-IFRNKEKVL 60
           M KKRKHSET      KKD+ APERPKR+L GWKDKE V ++ E+ +D   +FRNKEKV+
Sbjct: 1   MGKKRKHSETQTAEPKKKDEAAPERPKRSLFGWKDKEEVQQQTESNTDPPQVFRNKEKVM 60

Query: 61  VTCSRRINFRYRHLMLNIVSLLPHCKKDNKVESRSSKGATLNELVELKGCSSSLFFECRK 120
           VTCSRRIN+RYRHLMLN+VSLLPHCKKDNKVESRSSKGATLNEL+EL+GCSS+LFFECRK
Sbjct: 61  VTCSRRINYRYRHLMLNMVSLLPHCKKDNKVESRSSKGATLNELIELRGCSSALFFECRK 120

Query: 121 HKDLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLK 180
           H+DLYLWMA+CP+GPSVKFLVNAVHTMEELKLTGNHLKGSRP+LTFSSNF+KD HWKLLK
Sbjct: 121 HQDLYLWMARCPNGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFEKDAHWKLLK 180

Query: 181 EIIVQIFGTPKEHRHSKPYHDHVFIFSIVDDHIWFRNYQIAVPHNESDKVARGGLDKMTL 240
           E+I+QIFGTPKEHR SKPYHDHVF+FSI DDHIWFRNYQI+VPHNESDK+ RGGLDKMTL
Sbjct: 181 EMIIQIFGTPKEHRKSKPYHDHVFVFSIADDHIWFRNYQISVPHNESDKMVRGGLDKMTL 240

Query: 241 IEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRKM 300
           +EVGPRFCLNPIKIF GSFGGPTLYENP YVSPNQIRALEK+QKAGKY+KKVKAKTRRKM
Sbjct: 241 VEVGPRFCLNPIKIFAGSFGGPTLYENPFYVSPNQIRALEKRQKAGKYAKKVKAKTRRKM 300

Query: 301 HELSNPLEPDEFADMWKE 317
           HELSNPLEPDEFADMW+E
Sbjct: 301 HELSNPLEPDEFADMWRE 318

[Close]

BLAST of Lsi06G001470 vs. NCBI nr
Match: gi|590608740|ref|XP_007021346.1| (Ribosome biogenesis protein brix, putative [Theobroma cacao])

HSP 1 Score: 571.2 bits (1471), Expect = 1.1e-159
Identity = 271/319 (84.95%), Postives = 294/319 (92.16%), Query Frame = 1


Query: 1   MAKKRKHSETLPIVSVKKDDNAPERPKRTLMGWKDKE-VAKECEAGSDHA--IFRNKEKV 60
           M KKRK SET       KD+ APERPKRTL+GWKDKE VAK+ E+  D +  +FRNKEKV
Sbjct: 1   MGKKRKQSETQTAEPTNKDEGAPERPKRTLVGWKDKEEVAKQTESNPDSSSQVFRNKEKV 60

Query: 61  LVTCSRRINFRYRHLMLNIVSLLPHCKKDNKVESRSSKGATLNELVELKGCSSSLFFECR 120
           +VTCSRRIN+RYRHLMLN+VSLLPHCKKDNKVES+SSKGATLNEL+EL GCSS LFFECR
Sbjct: 61  MVTCSRRINYRYRHLMLNMVSLLPHCKKDNKVESKSSKGATLNELIELSGCSSCLFFECR 120

Query: 121 KHKDLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDKDVHWKLL 180
           KH+DLYLWMAK PSGPSVKFLVNAVHTMEELKLTGNHLKGSRP+LTFS NF+KD HWKLL
Sbjct: 121 KHQDLYLWMAKSPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSGNFEKDAHWKLL 180

Query: 181 KEIIVQIFGTPKEHRHSKPYHDHVFIFSIVDDHIWFRNYQIAVPHNESDKVARGGLDKMT 240
           KE+I+QIFGTPKEHR SKPYHDHVF+FSIVDDHIWFRNYQI+VPHNESDK+ RGGLDKMT
Sbjct: 181 KEMIMQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKMVRGGLDKMT 240

Query: 241 LIEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRK 300
           L+EVGPRFCLNPIKIFGGSFGGPTLYENP YVSPNQIRALEK+QKAGKY+KKVKAKTRRK
Sbjct: 241 LVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKRQKAGKYAKKVKAKTRRK 300

Query: 301 MHELSNPLEPDEFADMWKE 317
           MHELSNPLEPDEFADMW+E
Sbjct: 301 MHELSNPLEPDEFADMWRE 319

[Close]

BLAST of Lsi06G001470 vs. NCBI nr
Match: gi|729360173|ref|XP_010545808.1| (PREDICTED: ribosome biogenesis protein BRX1 [Tarenaya hassleriana])

HSP 1 Score: 568.5 bits (1464), Expect = 7.1e-159
Identity = 266/316 (84.18%), Postives = 291/316 (92.09%), Query Frame = 1


Query: 1   MAKKRKHSETLPIVSVKKDDNAPERPKRTLMGWKDKEVAKECEAGSDHAIFRNKEKVLVT 60
           M KKRKHSET      KK+D APERPKRTL+GWKD++   E    S  ++FRNKEKVLVT
Sbjct: 1   MGKKRKHSETEAPAPEKKNDAAPERPKRTLLGWKDQDAVSEKSDPSSSSVFRNKEKVLVT 60

Query: 61  CSRRINFRYRHLMLNIVSLLPHCKKDNKVESRSSKGATLNELVELKGCSSSLFFECRKHK 120
           CSRRINFRYRHLMLN+VSLLPHCKKD+KVE++SSKGATLNELVELKGCSS LFFECRKH+
Sbjct: 61  CSRRINFRYRHLMLNMVSLLPHCKKDSKVEAKSSKGATLNELVELKGCSSCLFFECRKHQ 120

Query: 121 DLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEI 180
           DLYLWM K P GPSVKFLVNAVHTMEELKLTGNHLKGSRP+LTFSSNF+KDVHWKLLKE+
Sbjct: 121 DLYLWMVKSPEGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFEKDVHWKLLKEM 180

Query: 181 IVQIFGTPKEHRHSKPYHDHVFIFSIVDDHIWFRNYQIAVPHNESDKVARGGLDKMTLIE 240
           ++QIFGTPKE R SKPYHDHVF+FSIVDDHIWFRNYQI+VPHNESDK+ARGGLDKMTL+E
Sbjct: 181 LIQIFGTPKEQRKSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKIARGGLDKMTLVE 240

Query: 241 VGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRKMHE 300
           VGPRFCLNPIKIFGGSFGGPTLYENP YVSPNQIRA+EK+ KAGK++KKVKAKTRRKMHE
Sbjct: 241 VGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRAMEKRNKAGKFAKKVKAKTRRKMHE 300

Query: 301 LSNPLEPDEFADMWKE 317
           LSNPLEPDEFADMWK+
Sbjct: 301 LSNPLEPDEFADMWKD 316

The following BLAST results are available for this feature:

BLAST of Lsi06G001470 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BRX1_RAT	1.1e-66	44.41	Ribosome biogenesis protein BRX1 homolog OS=Rattus norvegicus GN=Brix1 PE=2 SV=1	[more]
BRX1_HUMAN	3.2e-66	48.50	Ribosome biogenesis protein BRX1 homolog OS=Homo sapiens GN=BRIX1 PE=1 SV=2	[more]
BRX1_BOVIN	3.2e-66	48.50	Ribosome biogenesis protein BRX1 homolog OS=Bos taurus GN=BRIX1 PE=2 SV=1	[more]
BRX1_XENLA	4.1e-66	48.29	Ribosome biogenesis protein BRX1 homolog OS=Xenopus laevis GN=brix1 PE=2 SV=1	[more]
BRX1_PONAB	9.2e-66	48.12	Ribosome biogenesis protein BRX1 homolog OS=Pongo abelii GN=BRIX1 PE=2 SV=1	[more]

BLAST of Lsi06G001470 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0B0NEE6_GOSAR	4.5e-160	84.59	Ribosome biogenesis BRX1 OS=Gossypium arboreum GN=F383_18642 PE=4 SV=1	[more]
A0A0D2PI01_GOSRA	4.5e-160	84.59	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G319600 PE=4 SV=1	[more]
A0A061F737_THECC	7.6e-160	84.95	Ribosome biogenesis protein brix, putative OS=Theobroma cacao GN=TCM_031378 PE=4...	[more]
B9HZX2_POPTR	8.4e-159	84.86	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s12280g PE=4 SV=1	[more]
B9N1J9_POPTR	1.9e-158	85.17	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s41350g PE=4 SV=1	[more]

BLAST of Lsi06G001470 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G15460.1	9.5e-154	80.38	Ribosomal RNA processing Brix domain protein	[more]
AT1G52930.1	4.0e-152	79.75	Ribosomal RNA processing Brix domain protein	[more]

BLAST of Lsi06G001470 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659099573\|ref\|XP_008450669.1\|	3.6e-179	95.89	PREDICTED: ribosome biogenesis protein BRX1-like [Cucumis melo]	[more]
gi\|778662534\|ref\|XP_011659901.1\|	1.2e-174	93.99	PREDICTED: LOW QUALITY PROTEIN: ribosome biogenesis protein BRX1-like [Cucumis s...	[more]
gi\|823198009\|ref\|XP_012434459.1\|	6.4e-160	84.59	PREDICTED: ribosome biogenesis protein BRX1 [Gossypium raimondii]	[more]
gi\|590608740\|ref\|XP_007021346.1\|	1.1e-159	84.95	Ribosome biogenesis protein brix, putative [Theobroma cacao]	[more]
gi\|729360173\|ref\|XP_010545808.1\|	7.1e-159	84.18	PREDICTED: ribosome biogenesis protein BRX1 [Tarenaya hassleriana]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR026532	BRX1
IPR007109	Brix
IPR004154	Anticodon-bd

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000027	ribosomal large subunit assembly
biological_process	GO:0009220	pyrimidine ribonucleotide biosynthetic process
biological_process	GO:0001510	RNA methylation
biological_process	GO:0006139	nucleobase-containing compound metabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016758	transferase activity, transferring hexosyl groups

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G001470.1	Lsi06G001470.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004154	Anticodon-binding	unknown	SSF52954	Class II aaRS ABD-related	coord: 56..255 score: 2.06
IPR007109	Brix domain	PFAM	PF04427	Brix	coord: 62..251 score: 1.2
IPR007109	Brix domain	SMART	SM00879	Brix_2	coord: 58..252 score: 7.5
IPR007109	Brix domain	PROFILE	PS50833	BRIX	coord: 55..258 score: 32
IPR026532	Ribosome biogenesis protein BRX1	PANTHER	PTHR13634	RIBOSOME BIOGENESIS PROTEIN BRIX	coord: 2..316 score: 7.2E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi06G001470	Csa1G570210	Cucumber (Chinese Long) v2	culsiB058
Lsi06G001470	CSPI01G26790	Wild cucumber (PI 183967)	cpilsiB059
Lsi06G001470	CmaCh11G011220	Cucurbita maxima (Rimu)	cmalsiB146
Lsi06G001470	CmoCh11G011570	Cucurbita moschata (Rifu)	cmolsiB130
Lsi06G001470	Cla005250	Watermelon (97103) v1	lsiwmB396
Lsi06G001470	MELO3C015338	Melon (DHL92) v3.5.1	lsimeB396
Lsi06G001470	ClCG03G016840	Watermelon (Charleston Gray)	lsiwcgB364
Lsi06G001470	MELO3C015338.2	Melon (DHL92) v3.6.1	lsimedB418
Lsi06G001470	Cla97C03G067190	Watermelon (97103) v2	lsiwmbB365
Lsi06G001470	Bhi02G001671	Wax gourd	lsiwgoB530
Lsi06G001470	Cp4.1LG04g00670	Cucurbita pepo (Zucchini)	cpelsiB564
Lsi06G001470	CsGy1G026020	Cucumber (Gy14) v2	cgyblsiB055
Lsi06G001470	Carg21147	Silver-seed gourd	carlsiB501
Lsi06G001470	CsaV3_1G039130	Cucumber (Chinese Long) v3	cuclsiB068

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G001470	Cucurbita maxima (Rimu)	cmalsiB076
Lsi06G001470	Cucurbita maxima (Rimu)	cmalsiB178
Lsi06G001470	Cucurbita maxima (Rimu)	cmalsiB734
Lsi06G001470	Cucurbita moschata (Rifu)	cmolsiB065
Lsi06G001470	Cucurbita moschata (Rifu)	cmolsiB168
Lsi06G001470	Cucurbita moschata (Rifu)	cmolsiB723
Lsi06G001470	Cucurbita pepo (Zucchini)	cpelsiB095