Cp4.1LG04g00670 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG04g00670
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Ribosome biogenesis BRX1
Location	Cp4.1LG04 : 1368881 .. 1374436 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATGGAGGGTTTAGGGTTTAAAGGGATCTTCAAAGATTCTCCCTTTTAGCCATTCTCGCTCTCTATGCTTTGTATTTCCGCCGTAAGCTCGCTTCTTTCCCACTCTCCGCCGTCTCTCTCTCTCTCTCTCTCTCTCATTTAATCCTTACAGATTTCTTTAACCTCCTTCGCTTGATTTAGGTGTAGTATTTTTGAAGGGTTTTCATATTCTCAATGCCGAAGAAGAGGAAGCACAGCGAGACTTTGCCGATAGTATCGGTTAAGAAGGATGAAGGCGCCCCCGAGAGACCCAAGCGGACGCTTACGGGTTGGAAAGACAAGGAAGTCGCCAAAGAGACTGAATCTGGTTCCGATCATGCCGTTTTCCGGAATAAAGAGAAGGTTCTTGTCACTTGCTCCCGCCGAATCAATTTTAGGTACGAAATTGAACATCCCGAACTTGCATACTTGAATCAATAGAGCTGCTGGTAGTTTCACTTTTTTTTTTTTTTATAAGAGTTTTTTTTTTCTTTTTATTATTATTTCATTCTCTTCAGGTACAAGCTGTCGTGGTGTTCTAAATTTATCTATTAATGTACTATTTATTTCGATTATTAATTTAGTCATATGATTGGTAATGTTCAAGAAAGGAACAAAACCAGATTACTTATGAAAGAGAATTGTTAGGTGAAAGTGGTAATAGGTACAAGGGTGTGGTTTTGGAGGGAGATGTTGATAGGGGATCAACTATTGATGAAGAAATTTTCTAGTCTCTTTGTCCTTTCTCAACCAAAAGACATTTGGTTAAGGATATAACTTATGAGAGGAAGAAAATGGACTCTGGACAATTATAACACGATGACACCTATCAAATGTCGAAGCTAATGAATACAGAGAATTGATGGGATTGCTCAGTGATGTAATCGTTATTGAATAGAGGACATGAAATGAAAGTATTGGATGTCGAATCTTCAGGGCTGTTTTCAACTATTAAAGATAGCAGGTTTAAAGAAAGTGTTAAATAAGAAATTTCTTGATCGACTTCGAAGGGTCCTGTACTAAAGAGGAAGCCTTTTTTTCCTGCTGGGCTACTCTTTTTGAGTGTATATAGAGCTGAAAGGATGCAGCAGAGAAGCTTTTGTGGTGATTTTTCTGCTAAGTTGGTGTACTTTGGGTTGAAAATTTGAAGGTACTGTGTGATGTACAGTCTAGTGTTTATTGTTACTAAACTTTGTAGTGTGAAGTTCTGGAACTCAATAAGTTGAGTGTTGATTCCCTGCAAAAAGAACACAGTTCAAATGCAATGTGAAGAAGGTTTGAAAGGGAAACCAAGAACTATTTTTGACAAATGGAGTGATAGCTTTTTATGGGTTATGTGATTAGAAAGAAATAGTTGTAGGATATATTATGGTAAGGATAGATGTCGGGAAGAAGCTTTTTGATTTTGCCAAATTTTGATGTTCTTGGTGCTCACTCTCTACATCCTTCTGTAATTGCATCCTTTTAGTTAAAACAAGTTGGTGTAGCTTGTTGTATAATCTATTAATATACATGGTCTTGTAAGCTATTCACTCATCAATGAAATGTTTTTCTTCCTTTAGAATGATTGGCAATTTTATTAGCCTTTTTGTTTGATTAGGTATCGACATCTGATGTTGAACGTGGTATCACTTTTGCCACATTGTAAGAAGGATAACAAGGTGGAGTCGAGGTCCAGTAAGGGTGCAACACTCAATGAGCTAGTTGAACTCAAGGGTTGTTGTTCCTGCCTTTTTTTTGAGGTAAGATTTTTTGCTTTGTACTTTGTCCATGTCTAAACTTGGAACTCAATTCATACTCTGGACTTCGTAAGGTACTCTGTTTTTCAATTTTGCTTTTTGATTAGATTTAGGATGATAACCTTTTGGTTTCTGTTGTGGTAATAGGATGTATTAAGTATCCTTTTCTTTTCGTTTTATTATTTTCCTATATGCTTTTTCATCATTTTTATACATTGTGATTACATTACTTATTCCACTCATTCCATCTCAATGATGCATTCGATGTGTGTACTTGATTCTTACCGGTCTTTTTGTCCCCTGGATTGTGTTCCTGCACAATCGAATGAATCATTTAATTCCCAAAGCTTATTGCATGATTTTTCAGTTCCTTTTCTTTTTGTTTATGTAATTATTTCTGTCATTCAACATGCAATATAGCATTCACTTGAGCTTACTTATTGATTTTATTTTGTCTCTATTTCCAGTGCAGAAAACATAAAGATCTCTATTTATGGATGTCTAAGTGTCCTAGTGGGCCATCAGTGAAGTTTTTAGTTAATGCCGGTAATTTTAACTTGTAATCAAATCTTAAACTAGATTTCGTGACTGAAATTATATTGGACTTTTTTAATAAATGCAGTTTACTTACTTTTCCATTTTTGTTTTCAGTGCACACAATGGAAGAATTAAAACTTACAGGGAACCATCTGAAAGGTTCTCGTCCTCTTTTGTCATTCTCGTCGAATTTTGATAAAGATGTCCACTGGAAACTTCTGAAGGAAATAATTATTCAGGTAACCAATTGAAAAGTTCTTTCAAGCAGTTCATCCCTAAACTATTTTTCCTTCTTATACGTGAATGTATAAACTATCAATTTTCCTTGTCTTTCTCCTTTGAGTCCATTTTGTTTTTTTCCATTTCTTCATTCTCTCAATATCACTGTACGAATTGATTAAATAATGTTTGCATGACTACAGCCCAGTTATCAACTAGAATTCTATGACATGGATTTCAGTCATGTTTTGTCATGAATTTTTGTATGCAGTGCAAATTCCTTTGTCTTGGAATTTNATTATCATTCATTTTTCCGAATAAAAAGTTGGTTATCATGCGAAATGTAAAATAAAACAAAAAGAATACTCGTCAATGCACTTCTTTAATGTAATGTGCTATGACATAAGTTTGGGATTAGTGCCTCAATACTATCATTACCTTTTCATGCTGCATTTATTTATTTCCTAATTAAGATGGCCATATTGTTTGATTTTCTGCCCTGCTAGCTATGCTGCAAAAAGTAATTATAGATCCTAGTTGCTTCTCTAGTTTATGATATTATTGCTAAAAATCCTGTGAAGTCACATTTTAATTTGTAATAATTTTAGTATCAATTATGTTTTTTACCTCAGATATTTGGGACTCCGAAGGAGCATCGACACTCTAAACCATACCATGATCATGTATTTGTTTTCTCCATTGTTGATGACCACATATGGTTCCGAAATTACCAGGTATGCTTTATTTATTCTACCTTCTACAGAATTTGATGCTCTCAATTGTGTATAGCGTCCAAATGCATACATTACTTGACAATCAAATCATGTACTGGATGTTGTCTTTCTTTTTAATGTTTGCTCACCACATTTTTTAAAACATGGCCTATGAAAGCAGAAAAATATATTCTACATCATGGCAGGTAAAGACATCGGGAAAACTTCGAGTATTATCAGTTTCAGTACAGATGTCAATTATTTTTTATGACATTGGAAGTATATTAATAATTGGTTGAGTCTTTTGATCGACGCATTTTATATGAAGACCAAGATAAGAGCTTGGCCATGAAGCCTGCCTTGGAGCTGCAGAAAGATGATCAAACCTATTGTGAAGAGTCACAACTATTGTTCAATAGCTCAGACATTTTACATATAAATGATATTAAGTCCAAGAAACGGGAGTATTAAAAAAAGAATGTGATGAGAGCATTTTCTTTTCAAATACCTCTAGAAGCTTTGGTTTCCCTTCTTGGTTTGTATTGGAAGTTCTAGTCTGCCTTGTCAAAAGCTTTTTCTTACAACGAAAAATGGTGGGAAAAAAAACAGCGCTCAATTTTTAGAGGTAATGATCAAGGCTTCATTACCTCGATTCTCGTCGGCTTTGCATCCTCTCTCCTCTCTATCTCGATTCTCCTTCCTCTCTATCAATCTCAATCTTTGTTTTTTCTCACTTGCATCTTCATTCCATGCAAGCCCTTTCAGAGCTGTTCCATGCGCAGTCTCCTATGTCTCTCTCATTCTAGGCTTTAAAATTTCTCTCCTCATCTGCATCTCTACTCCAAATCTCTCATTGGCAGCTTCTCCACCTGATTCTGGTCTCTTGTTTCTCTCGATTGTTGTCTGTTTCCAACCATTGAATGACGCGACTTTTAGGGTTGGTGGGTTGGGTCGGATACTGCATTCAGTTTCTCCTAGTAGATAAACTGGTTTGGGTTGGCCCATAAAGTGCCCTAACCTGACCCAACCTAACCCATGCACAGCCCTAGTGTCCTGTTCCTATTAGACTCCTTTGCCATTTGCATTTTCTTTTTATTCCATAAAATTATATGTTCACTTTTGCAATAAATGTTGGTATATTTTCCCTGATTTGTGTGGGTGTGATCTCTTCCCCAAGTAACCATTATTTAATGATATGGCGTTTGCCATGTTTGTTTGGTGTGATCAGATATCTGTTCCACATAATGAATCAGATAAAGTTGCCCGAGGAGGACTAGATAAAATGACACTCATCGAGGTTACTATTTTTCCTTGTCCTGCTTAGTTTATAAATATGATTTTTTCACAATTTTGTTTATTCGACTTCAAAGATTTCTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTAGGTTGGTCCTCGATTCTGTTTAAATCCAATCAAGATATTTGGTGGAAGTTTTGGAGGCCCAACCCTATACGAGAACCCGCTTTACGTGTCACCAAACCAGGTTAGATGACTACTTTTTTATCTTCGGTACATGTCTTCACTATGCCTTTTCAACCTGCTTTTACATATTTTCTGAGAGCTCACATTTGCATTAATTATCAAGAAGAGCAAACTGCGTTGAGACATTAGCTATTCTTTTAGGGTTTCTCTAAGTTCATGTTTTCCAATTCAAGTGTCTTTGAGAAATGATCTGCTCATCTCATTTACCATTATGCTTTTGGTAATGTCTTTTACACGGTGTAAAACCCAAAATTAGCAATATTCTCTAGAATACTTCAAAGAACAGTTTCTCATATTGTACGAATTTGCAATTGAGTCTGATAATCTGTACTTTTAACCATTAAACATATACCTGCTTGCTCATGTTTATTATGTCCATTAAATTTAACCATTAAACATATCCCTAGATTCGAGCATTGGAGAAAAAGCAGAAAGCCGGTAAATACTCAAAGAAAGTCAAAGCGAAAACGAGGAGGAAGATGCACGAGCTATCGAATCCATTGGAACCTGATGAGTTTGCTGATATGTGGAAGGAATAGTCTCTCTATGGACTTAATTTTGTCTAGACTCCGAACCCGAGTTCCTTACCTCCAGTATGAAATCGGAATTTGATCTATAATCTATAATACTGTGTCATCTGTAGTGCAAATTTTGGCCTTGTTATTTACTTGAAGCTCGAATTCGATTTCTGTACCTTCAATATTTTTTGTTCGTCTTCTCAGTGAATTACTTTAGATACAGTTTTACTAGAAAACAGCTTCATTCCAACCCTTGTTTGGGTATAATGAGTTCTTAAACATATCCTGAGCCCCATAAT

mRNA sequence

CATGGAGGGTTTAGGGTTTAAAGGGATCTTCAAAGATTCTCCCTTTTAGCCATTCTCGCTCTCTATGCTTTGTATTTCCGCCGTGTAGTATTTTTGAAGGGTTTTCATATTCTCAATGCCGAAGAAGAGGAAGCACAGCGAGACTTTGCCGATAGTATCGGTTAAGAAGGATGAAGGCGCCCCCGAGAGACCCAAGCGGACGCTTACGGGTTGGAAAGACAAGGAAGTCGCCAAAGAGACTGAATCTGGTTCCGATCATGCCGTTTTCCGGAATAAAGAGAAGGTTCTTGTCACTTGCTCCCGCCGAATCAATTTTAGGTATCGACATCTGATGTTGAACGTGGTATCACTTTTGCCACATTGTAAGAAGGATAACAAGGTGGAGTCGAGGTCCAGTAAGGGTGCAACACTCAATGAGCTAGTTGAACTCAAGGGTTGTTGTTCCTGCCTTTTTTTTGAGTGCAGAAAACATAAAGATCTCTATTTATGGATGTCTAAGTGTCCTAGTGGGCCATCAGTGAAGTTTTTAGTTAATGCCGTGCACACAATGGAAGAATTAAAACTTACAGGGAACCATCTGAAAGGTTCTCGTCCTCTTTTGTCATTCTCGTCGAATTTTGATAAAGATGTCCACTGGAAACTTCTGAAGGAAATAATTATTCAGATATTTGGGACTCCGAAGGAGCATCGACACTCTAAACCATACCATGATCATGTATTTGTTTTCTCCATTGTTGATGACCACATATGGTTCCGAAATTACCAGATATCTGTTCCACATAATGAATCAGATAAAGTTGCCCGAGGAGGACTAGATAAAATGACACTCATCGAGGTTGGTCCTCGATTCTGTTTAAATCCAATCAAGATATTTGGTGGAAGTTTTGGAGGCCCAACCCTATACGAGAACCCGCTTTACGTGTCACCAAACCAGATTCGAGCATTGGAGAAAAAGCAGAAAGCCGGTAAATACTCAAAGAAAGTCAAAGCGAAAACGAGGAGGAAGATGCACGAGCTATCGAATCCATTGGAACCTGATGAGTTTGCTGATATGTGGAAGGAATAGTCTCTCTATGGACTTAATTTTGTCTAGACTCCGAACCCGAGTTCCTTACCTCCAGTATGAAATCGGAATTTGATCTATAATCTATAATACTGTGTCATCTGTAGTGCAAATTTTGGCCTTGTTATTTACTTGAAGCTCGAATTCGATTTCTGTACCTTCAATATTTTTTGTTCGTCTTCTCAGTGAATTACTTTAGATACAGTTTTACTAGAAAACAGCTTCATTCCAACCCTTGTTTGGGTATAATGAGTTCTTAAACATATCCTGAGCCCCATAAT

Coding sequence (CDS)

ATGCCGAAGAAGAGGAAGCACAGCGAGACTTTGCCGATAGTATCGGTTAAGAAGGATGAAGGCGCCCCCGAGAGACCCAAGCGGACGCTTACGGGTTGGAAAGACAAGGAAGTCGCCAAAGAGACTGAATCTGGTTCCGATCATGCCGTTTTCCGGAATAAAGAGAAGGTTCTTGTCACTTGCTCCCGCCGAATCAATTTTAGGTATCGACATCTGATGTTGAACGTGGTATCACTTTTGCCACATTGTAAGAAGGATAACAAGGTGGAGTCGAGGTCCAGTAAGGGTGCAACACTCAATGAGCTAGTTGAACTCAAGGGTTGTTGTTCCTGCCTTTTTTTTGAGTGCAGAAAACATAAAGATCTCTATTTATGGATGTCTAAGTGTCCTAGTGGGCCATCAGTGAAGTTTTTAGTTAATGCCGTGCACACAATGGAAGAATTAAAACTTACAGGGAACCATCTGAAAGGTTCTCGTCCTCTTTTGTCATTCTCGTCGAATTTTGATAAAGATGTCCACTGGAAACTTCTGAAGGAAATAATTATTCAGATATTTGGGACTCCGAAGGAGCATCGACACTCTAAACCATACCATGATCATGTATTTGTTTTCTCCATTGTTGATGACCACATATGGTTCCGAAATTACCAGATATCTGTTCCACATAATGAATCAGATAAAGTTGCCCGAGGAGGACTAGATAAAATGACACTCATCGAGGTTGGTCCTCGATTCTGTTTAAATCCAATCAAGATATTTGGTGGAAGTTTTGGAGGCCCAACCCTATACGAGAACCCGCTTTACGTGTCACCAAACCAGATTCGAGCATTGGAGAAAAAGCAGAAAGCCGGTAAATACTCAAAGAAAGTCAAAGCGAAAACGAGGAGGAAGATGCACGAGCTATCGAATCCATTGGAACCTGATGAGTTTGCTGATATGTGGAAGGAATAG

Protein sequence

MPKKRKHSETLPIVSVKKDEGAPERPKRTLTGWKDKEVAKETESGSDHAVFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVESRSSKGATLNELVELKGCCSCLFFECRKHKDLYLWMSKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLSFSSNFDKDVHWKLLKEIIIQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKVARGGLDKMTLIEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRKMHELSNPLEPDEFADMWKE

Homology

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BLAST of Cp4.1LG04g00670 vs. Swiss-Prot
Match: BRX1_RAT (Ribosome biogenesis protein BRX1 homolog OS=Rattus norvegicus GN=Brix1 PE=2 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 3.4e-68
Identity = 150/325 (46.15%), Postives = 193/325 (59.38%), Query Frame = 1


Query: 4   KRKHSETLPIVSVK-----KDEGAPERPKRTLTGWKDKEVAKETESGSDH-------AVF 63
           KRK    L + + K     KD G P          K  +VAKE E   D          +
Sbjct: 5   KRKRRGDLEVQAKKPKKNRKDAGQPA---------KQADVAKEAEEEKDRIPGPVCKGKW 64

Query: 64  RNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVESRSSKGATLNELVELKGCCSC 123
           +NKE++L+  SR INFR RHLM ++  L+PH K D K++ R  K   +NE+ E+K C  C
Sbjct: 65  KNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMD-RKDKLFVINEVCEMKNCNKC 124

Query: 124 LFFECRKHKDLYLWMSKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLSFSSNFDKD 183
           ++FE +K +DLY+W+S  P GPS KFLV  +HT+ ELK+TGN LKGSRPLLSF   FD  
Sbjct: 125 IYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDDL 184

Query: 184 VHWKLLKEIIIQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKVARG 243
            H+ LLKE +IQIF TP+ H  S+P+ DHVF F+I+D+ IWFRN+QI     E D     
Sbjct: 185 PHYALLKEFLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQII----EED----- 244

Query: 244 GLDKMTLIEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKK-- 303
                 L+E+GPRF LN IKIF GSFGGPTLYENP Y SPN  R + +   A KY +K  
Sbjct: 245 ----AALVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHRRVVRSITAAKYREKQQ 304

Query: 304 VKAKTRRKMHELSNPLEPDEFADMW 315
           VK   + +  E    L  D  AD++
Sbjct: 305 VKDVQKSRKKEPKTILPHDPTADVF 306

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BLAST of Cp4.1LG04g00670 vs. Swiss-Prot
Match: BRX1_MOUSE (Ribosome biogenesis protein BRX1 homolog OS=Mus musculus GN=Brix1 PE=1 SV=3)

HSP 1 Score: 257.3 bits (656), Expect = 2.2e-67
Identity = 148/326 (45.40%), Postives = 195/326 (59.82%), Query Frame = 1


Query: 4   KRKHSETLPIVSVK-----KDEGAPERPKRTLTGWKDKEVAKETESGSDHAV-------- 63
           KRK    L + + K     KD G P          K  +VAKE E  +   +        
Sbjct: 5   KRKRRGGLEVQAKKPKRSSKDAGQPA---------KQADVAKEAEEENRDRIPGPVCKGK 64

Query: 64  FRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVESRSSKGATLNELVELKGCCS 123
           ++NKE++L+  SR INFR RHLM ++  L+PH K D K++ R  K   +NE+ E+K C  
Sbjct: 65  WKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMD-RKDKLFVINEVCEMKNCNK 124

Query: 124 CLFFECRKHKDLYLWMSKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLSFSSNFDK 183
           C++FE +K +DLY+W+S  P GPS KFLV  +HT+ ELK+TGN LKGSRPLLSF   FD 
Sbjct: 125 CIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDD 184

Query: 184 DVHWKLLKEIIIQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKVAR 243
             H+ LLKE +IQIF TP+ H  S+P+ DHVF F+I+D+ IWFRN+QI     E D    
Sbjct: 185 LPHYALLKEFLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQII----EED---- 244

Query: 244 GGLDKMTLIEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKV 303
                  L+E+GPRF LN IKIF GSFGGPTLYENP Y SPN  R + +   A KY ++ 
Sbjct: 245 -----AALVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHRRVIRSITAAKYRERQ 304

Query: 304 KAKTRRKMH--ELSNPLEPDEFADMW 315
           + K  +K+   E    L  D  AD++
Sbjct: 305 QVKDVQKLRKKEPKTILPHDPTADVF 307

[Close]

BLAST of Cp4.1LG04g00670 vs. Swiss-Prot
Match: BRX1_HUMAN (Ribosome biogenesis protein BRX1 homolog OS=Homo sapiens GN=BRIX1 PE=1 SV=2)

HSP 1 Score: 256.5 bits (654), Expect = 3.7e-67
Identity = 145/316 (45.89%), Postives = 197/316 (62.34%), Query Frame = 1


Query: 3   KKRKHSETLPIVSVKKDEGAPERP-KRTLTGWKDKEVAKETESGSD-HAVFRNKEKVLVT 62
           +KR+    +     K++E   E P KR  T  + +E  ++   G      ++NKE++L+ 
Sbjct: 6   RKRRGGFAVQAKKPKRNEIDAEPPAKRHATAEEVEEEERDRIPGPVCKGKWKNKERILIF 65

Query: 63  CSRRINFRYRHLMLNVVSLLPHCKKDNKVESRSSKGATLNELVELKGCCSCLFFECRKHK 122
            SR INFR RHLM ++  L+PH K D K++ R  K   +NE+ E+K C  C++FE +K +
Sbjct: 66  SSRGINFRTRHLMQDLRMLMPHSKADTKMD-RKDKLFVINEVCEMKNCNKCIYFEAKKKQ 125

Query: 123 DLYLWMSKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLSFSSNFDKDVHWKLLKEI 182
           DLY+W+S  P GPS KFLV  +HT+ ELK+TGN LKGSRPLLSF   FD+  H+ LLKE+
Sbjct: 126 DLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDELPHYALLKEL 185

Query: 183 IIQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKVARGGLDKMTLIE 242
           +IQIF TP+ H  S+P+ DHVF F+I+D+ IWFRN+QI     E D           L+E
Sbjct: 186 LIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQII----EED---------AALVE 245

Query: 243 VGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRKMH- 302
           +GPRF LN IKIF GSFGGPTLYENP Y SPN  R + +   A KY +K + K  +K+  
Sbjct: 246 IGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHRRVIRSITAAKYREKQQVKDVQKLRK 305

Query: 303 -ELSNPLEPDEFADMW 315
            E    L  D  AD++
Sbjct: 306 KEPKTLLPHDPTADVF 307

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BLAST of Cp4.1LG04g00670 vs. Swiss-Prot
Match: BRX1_PONAB (Ribosome biogenesis protein BRX1 homolog OS=Pongo abelii GN=BRIX1 PE=2 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 6.4e-67
Identity = 144/316 (45.57%), Postives = 196/316 (62.03%), Query Frame = 1


Query: 3   KKRKHSETLPIVSVKKDEGAPERP-KRTLTGWKDKEVAKETESGSD-HAVFRNKEKVLVT 62
           +KR+    +     K++E   E P KR  T  + +E  ++   G      ++NKE++L+ 
Sbjct: 6   RKRRGGFAVQAKKPKRNEKDAEPPAKRHATAEEVEEEERDRIPGPVCKGKWKNKERILIF 65

Query: 63  CSRRINFRYRHLMLNVVSLLPHCKKDNKVESRSSKGATLNELVELKGCCSCLFFECRKHK 122
            SR INFR RHLM ++  L+PH K D K++ R  K   +NE+ E+K C  C++FE +K +
Sbjct: 66  SSRGINFRTRHLMQDLRMLMPHSKADTKMD-RKDKLFVINEVCEMKNCNKCIYFEAKKKQ 125

Query: 123 DLYLWMSKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLSFSSNFDKDVHWKLLKEI 182
           DLY+W+S  P GPS KFLV  +HT+ ELK+TGN LKGSRPLLSF   FD+  H+ LLKE+
Sbjct: 126 DLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDELPHYALLKEL 185

Query: 183 IIQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKVARGGLDKMTLIE 242
           +IQI  TP+ H  S+P+ DHVF F+I+D+ IWFRN+QI     E D           L+E
Sbjct: 186 LIQILSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQII----EED---------AALVE 245

Query: 243 VGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRKMH- 302
           +GPRF LN IKIF GSFGGPTLYENP Y SPN  R + +   A KY +K + K  +K+  
Sbjct: 246 IGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHRRVTRSITAAKYREKQQVKDVQKLRK 305

Query: 303 -ELSNPLEPDEFADMW 315
            E    L  D  AD++
Sbjct: 306 KEPKTLLPHDPTADVF 307

[Close]

BLAST of Cp4.1LG04g00670 vs. Swiss-Prot
Match: BRX1_BOVIN (Ribosome biogenesis protein BRX1 homolog OS=Bos taurus GN=BRIX1 PE=2 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 6.4e-67
Identity = 144/317 (45.43%), Postives = 193/317 (60.88%), Query Frame = 1


Query: 4   KRKHSETLPIVSVKKDEGAPERPKRTLTGWKDKEVAKETESGSDHAV----FRNKEKVLV 63
           KRK    L + + K    A +           +E A+E +      V    ++NKE++L+
Sbjct: 5   KRKRRGGLAVQAKKLKRDAKDGKLPAKANDVSEEAAEEEKDRIPGPVCKGKWKNKERILI 64

Query: 64  TCSRRINFRYRHLMLNVVSLLPHCKKDNKVESRSSKGATLNELVELKGCCSCLFFECRKH 123
             SR INFR RHLM ++  L+PH K D K++ R  K   +NE+ E+K C  C++FE +K 
Sbjct: 65  FSSRGINFRTRHLMQDLRMLMPHSKADTKMD-RKDKLFVINEVCEMKNCNKCIYFEAKKK 124

Query: 124 KDLYLWMSKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLSFSSNFDKDVHWKLLKE 183
           +DLY+W+S  P GPS KFLV  +HT+ ELK+TGN LKGSRPLLSF   FD+  H+ LLKE
Sbjct: 125 QDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDELPHYALLKE 184

Query: 184 IIIQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKVARGGLDKMTLI 243
           ++IQIF TP+ H  S+P+ DHVF F+I+D+ IWFRN+QI     E D           L+
Sbjct: 185 LLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQII----EED---------AALV 244

Query: 244 EVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRKMH 303
           E+GPRF LN IKIF GSFGGPTLYENP Y SPN  R + +   A KY +K + K  +K+ 
Sbjct: 245 EIGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHRRVIRSITAAKYREKQQVKDVQKLR 304

Query: 304 --ELSNPLEPDEFADMW 315
             E    L  D  AD++
Sbjct: 305 KKEPKTILPHDPTADVF 307

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BLAST of Cp4.1LG04g00670 vs. TrEMBL
Match: A0A061F737_THECC (Ribosome biogenesis protein brix, putative OS=Theobroma cacao GN=TCM_031378 PE=4 SV=1)

HSP 1 Score: 577.0 bits (1486), Expect = 1.4e-161
Identity = 277/319 (86.83%), Postives = 295/319 (92.48%), Query Frame = 1


Query: 1   MPKKRKHSETLPIVSVKKDEGAPERPKRTLTGWKDKE-VAKETESGSDHA--VFRNKEKV 60
           M KKRK SET       KDEGAPERPKRTL GWKDKE VAK+TES  D +  VFRNKEKV
Sbjct: 1   MGKKRKQSETQTAEPTNKDEGAPERPKRTLVGWKDKEEVAKQTESNPDSSSQVFRNKEKV 60

Query: 61  LVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVESRSSKGATLNELVELKGCCSCLFFECR 120
           +VTCSRRIN+RYRHLMLN+VSLLPHCKKDNKVES+SSKGATLNEL+EL GC SCLFFECR
Sbjct: 61  MVTCSRRINYRYRHLMLNMVSLLPHCKKDNKVESKSSKGATLNELIELSGCSSCLFFECR 120

Query: 121 KHKDLYLWMSKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLSFSSNFDKDVHWKLL 180
           KH+DLYLWM+K PSGPSVKFLVNAVHTMEELKLTGNHLKGSRPLL+FS NF+KD HWKLL
Sbjct: 121 KHQDLYLWMAKSPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSGNFEKDAHWKLL 180

Query: 181 KEIIIQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKVARGGLDKMT 240
           KE+I+QIFGTPKEHR SKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDK+ RGGLDKMT
Sbjct: 181 KEMIMQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKMVRGGLDKMT 240

Query: 241 LIEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRK 300
           L+EVGPRFCLNPIKIFGGSFGGPTLYENP YVSPNQIRALEK+QKAGKY+KKVKAKTRRK
Sbjct: 241 LVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKRQKAGKYAKKVKAKTRRK 300

Query: 301 MHELSNPLEPDEFADMWKE 317
           MHELSNPLEPDEFADMW+E
Sbjct: 301 MHELSNPLEPDEFADMWRE 319

[Close]

BLAST of Cp4.1LG04g00670 vs. TrEMBL
Match: A0A0B0NEE6_GOSAR (Ribosome biogenesis BRX1 OS=Gossypium arboreum GN=F383_18642 PE=4 SV=1)

HSP 1 Score: 572.0 bits (1473), Expect = 4.5e-160
Identity = 274/318 (86.16%), Postives = 295/318 (92.77%), Query Frame = 1


Query: 1   MPKKRKHSETLPIVSVKKDEGAPERPKRTLTGWKDKE-VAKETESGSDHA-VFRNKEKVL 60
           M KKRKHSET      KKDE APERPKR+L GWKDKE V ++TES +D   VFRNKEKV+
Sbjct: 1   MGKKRKHSETQTAEPKKKDEAAPERPKRSLFGWKDKEEVQQQTESNTDPPQVFRNKEKVM 60

Query: 61  VTCSRRINFRYRHLMLNVVSLLPHCKKDNKVESRSSKGATLNELVELKGCCSCLFFECRK 120
           VTCSRRIN+RYRHLMLN+VSLLPHCKKDNKVESRSSKGATLNEL+EL+GC S LFFECRK
Sbjct: 61  VTCSRRINYRYRHLMLNMVSLLPHCKKDNKVESRSSKGATLNELIELRGCSSALFFECRK 120

Query: 121 HKDLYLWMSKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLSFSSNFDKDVHWKLLK 180
           H+DLYLWM++CP+GPSVKFLVNAVHTMEELKLTGNHLKGSRPLL+FSSNF+KD HWKLLK
Sbjct: 121 HQDLYLWMARCPNGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFEKDAHWKLLK 180

Query: 181 EIIIQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKVARGGLDKMTL 240
           E+IIQIFGTPKEHR SKPYHDHVFVFSI DDHIWFRNYQISVPHNESDK+ RGGLDKMTL
Sbjct: 181 EMIIQIFGTPKEHRKSKPYHDHVFVFSIADDHIWFRNYQISVPHNESDKMVRGGLDKMTL 240

Query: 241 IEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRKM 300
           +EVGPRFCLNPIKIF GSFGGPTLYENP YVSPNQIRALEK+QKAGKY+KKVKAKTRRKM
Sbjct: 241 VEVGPRFCLNPIKIFAGSFGGPTLYENPFYVSPNQIRALEKRQKAGKYAKKVKAKTRRKM 300

Query: 301 HELSNPLEPDEFADMWKE 317
           HELSNPLEPDEFADMW+E
Sbjct: 301 HELSNPLEPDEFADMWRE 318

[Close]

BLAST of Cp4.1LG04g00670 vs. TrEMBL
Match: A0A0D2PI01_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G319600 PE=4 SV=1)

HSP 1 Score: 572.0 bits (1473), Expect = 4.5e-160
Identity = 274/318 (86.16%), Postives = 295/318 (92.77%), Query Frame = 1


Query: 1   MPKKRKHSETLPIVSVKKDEGAPERPKRTLTGWKDKE-VAKETESGSDHA-VFRNKEKVL 60
           M KKRKHSET      KKDE APERPKR+L GWKDKE V ++TES +D   VFRNKEKV+
Sbjct: 1   MGKKRKHSETQTAEPKKKDEAAPERPKRSLFGWKDKEEVQQQTESNTDPPQVFRNKEKVM 60

Query: 61  VTCSRRINFRYRHLMLNVVSLLPHCKKDNKVESRSSKGATLNELVELKGCCSCLFFECRK 120
           VTCSRRIN+RYRHLMLN+VSLLPHCKKDNKVESRSSKGATLNEL+EL+GC S LFFECRK
Sbjct: 61  VTCSRRINYRYRHLMLNMVSLLPHCKKDNKVESRSSKGATLNELIELRGCSSALFFECRK 120

Query: 121 HKDLYLWMSKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLSFSSNFDKDVHWKLLK 180
           H+DLYLWM++CP+GPSVKFLVNAVHTMEELKLTGNHLKGSRPLL+FSSNF+KD HWKLLK
Sbjct: 121 HQDLYLWMARCPNGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFEKDAHWKLLK 180

Query: 181 EIIIQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKVARGGLDKMTL 240
           E+IIQIFGTPKEHR SKPYHDHVFVFSI DDHIWFRNYQISVPHNESDK+ RGGLDKMTL
Sbjct: 181 EMIIQIFGTPKEHRKSKPYHDHVFVFSIADDHIWFRNYQISVPHNESDKMVRGGLDKMTL 240

Query: 241 IEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRKM 300
           +EVGPRFCLNPIKIF GSFGGPTLYENP YVSPNQIRALEK+QKAGKY+KKVKAKTRRKM
Sbjct: 241 VEVGPRFCLNPIKIFAGSFGGPTLYENPFYVSPNQIRALEKRQKAGKYAKKVKAKTRRKM 300

Query: 301 HELSNPLEPDEFADMWKE 317
           HELSNPLEPDEFADMW+E
Sbjct: 301 HELSNPLEPDEFADMWRE 318

[Close]

BLAST of Cp4.1LG04g00670 vs. TrEMBL
Match: A0A067JSR7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22878 PE=4 SV=1)

HSP 1 Score: 567.8 bits (1462), Expect = 8.4e-159
Identity = 277/317 (87.38%), Postives = 288/317 (90.85%), Query Frame = 1


Query: 1   MPKKRKHSETLPIVSVKKDEGAPERPKRTLTGWKDK-EVAKETESGSDHAVFRNKEKVLV 60
           M KKRK SET      KKDE APERP+RTL GWKD     KETE+     VFRNKEKVLV
Sbjct: 1   MGKKRKISETEVTAPSKKDESAPERPQRTLLGWKDNGSEVKETET----QVFRNKEKVLV 60

Query: 61  TCSRRINFRYRHLMLNVVSLLPHCKKDNKVESRSSKGATLNELVELKGCCSCLFFECRKH 120
           TCSRRIN+RYRHLMLNVVSLLPHCKKDNKVES+SSKG  LNELVELK C SCLFFECRKH
Sbjct: 61  TCSRRINYRYRHLMLNVVSLLPHCKKDNKVESKSSKGMALNELVELKSCSSCLFFECRKH 120

Query: 121 KDLYLWMSKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLSFSSNFDKDVHWKLLKE 180
           KDLYLWM+KCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPLL+FSSNFDKD HWKLLKE
Sbjct: 121 KDLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFDKDDHWKLLKE 180

Query: 181 IIIQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKVARGGLDKMTLI 240
           +IIQIFGTPKEHR SKPYHDHVFVFSI DDHIWFRNYQISVPHNESDKVARGGLDKMTL+
Sbjct: 181 MIIQIFGTPKEHRKSKPYHDHVFVFSIADDHIWFRNYQISVPHNESDKVARGGLDKMTLV 240

Query: 241 EVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRKMH 300
           EVGPRFCLNPIKIFGGSFGGPTLYENP YVSPNQIRALEKKQKAGKY+KKVKAK RRKMH
Sbjct: 241 EVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKKQKAGKYAKKVKAKKRRKMH 300

Query: 301 ELSNPLEPDEFADMWKE 317
           E+SNPLEPDEFADMW+E
Sbjct: 301 EMSNPLEPDEFADMWRE 313

[Close]

BLAST of Cp4.1LG04g00670 vs. TrEMBL
Match: B9N1J9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s41350g PE=4 SV=1)

HSP 1 Score: 564.7 bits (1454), Expect = 7.1e-158
Identity = 274/317 (86.44%), Postives = 289/317 (91.17%), Query Frame = 1


Query: 1   MPKKRKHSETLPIVSVKKDEGAPERPKRTLTGWKDKEVAKETES-GSDHAVFRNKEKVLV 60
           M KKRKH ET  I   KKDEGAPERPKRTL GWKDK   KETE        FRNKEKVLV
Sbjct: 1   MGKKRKHVETQVIEPAKKDEGAPERPKRTLLGWKDKPEVKETEFIPPQQGGFRNKEKVLV 60

Query: 61  TCSRRINFRYRHLMLNVVSLLPHCKKDNKVESRSSKGATLNELVELKGCCSCLFFECRKH 120
           TCSRRINFRYRHLMLN+VSLLPHCKKD+KVES S+KGATLNELVELK   S LFFECRKH
Sbjct: 61  TCSRRINFRYRHLMLNLVSLLPHCKKDSKVESTSTKGATLNELVELKNGSSSLFFECRKH 120

Query: 121 KDLYLWMSKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLSFSSNFDKDVHWKLLKE 180
           KDLYLWM KCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPLL+FS+NFDKD HWKLLKE
Sbjct: 121 KDLYLWMVKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSANFDKDAHWKLLKE 180

Query: 181 IIIQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKVARGGLDKMTLI 240
           +IIQIFGTPK+HR SKP++DHVFVFSIVDDHIWFRNYQISVPHNE+DK+ARGGLDKMTL+
Sbjct: 181 MIIQIFGTPKDHRKSKPFYDHVFVFSIVDDHIWFRNYQISVPHNETDKIARGGLDKMTLV 240

Query: 241 EVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRKMH 300
           EVGPRFCLNPIKIFGGSFGGPTLYENP +VSPNQIRALEKKQKAGK++KKVKAKTRRKMH
Sbjct: 241 EVGPRFCLNPIKIFGGSFGGPTLYENPFFVSPNQIRALEKKQKAGKFAKKVKAKTRRKMH 300

Query: 301 ELSNPLEPDEFADMWKE 317
           ELSNPLEPDEFADMWKE
Sbjct: 301 ELSNPLEPDEFADMWKE 317

[Close]

BLAST of Cp4.1LG04g00670 vs. TAIR10
Match: AT3G15460.1 (AT3G15460.1 Ribosomal RNA processing Brix domain protein)

HSP 1 Score: 538.5 bits (1386), Expect = 2.8e-153
Identity = 256/316 (81.01%), Postives = 281/316 (88.92%), Query Frame = 1


Query: 1   MPKKRKHSETLPIVSVKKDEGAPERPKRTLTGWKDKEVAKETESGSDHAVFRNKEKVLVT 60
           M +KRKHSET+    VK  + APERP+RTL GWKDK+   E    +  +VFRNKEKVLVT
Sbjct: 1   MGRKRKHSETVTAAPVK--DSAPERPQRTLLGWKDKKEDAENSKPAYASVFRNKEKVLVT 60

Query: 61  CSRRINFRYRHLMLNVVSLLPHCKKDNKVESRSSKGATLNELVELKGCCSCLFFECRKHK 120
           CSRRINFRYRHLMLN+VSLLPHCKKD+KVE++SS+GATLNEL+ELKG  SCLFFECRKHK
Sbjct: 61  CSRRINFRYRHLMLNMVSLLPHCKKDSKVEAKSSRGATLNELIELKGSSSCLFFECRKHK 120

Query: 121 DLYLWMSKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLSFSSNFDKDVHWKLLKEI 180
           DLY+WM K P GPSVKFLVNAVHTMEELKLTGNHLKGSRPLL+FSSNF+ D HWKLLKE+
Sbjct: 121 DLYMWMVKSPGGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFENDAHWKLLKEM 180

Query: 181 IIQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKVARGGLDKMTLIE 240
           + QIFG P+ HR SKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDK+ARG LDKMTLIE
Sbjct: 181 LTQIFGIPEGHRKSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKIARGDLDKMTLIE 240

Query: 241 VGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRKMHE 300
           VGPRFCLNPIKIFGGSFGG TLYENP YVSPNQIRALEK+ KAGK++KK+KAKTRRKMHE
Sbjct: 241 VGPRFCLNPIKIFGGSFGGTTLYENPFYVSPNQIRALEKRNKAGKFAKKIKAKTRRKMHE 300

Query: 301 LSNPLEPDEFADMWKE 317
           LSNPLEPDEF DMW +
Sbjct: 301 LSNPLEPDEFTDMWND 314

[Close]

BLAST of Cp4.1LG04g00670 vs. TAIR10
Match: AT1G52930.1 (AT1G52930.1 Ribosomal RNA processing Brix domain protein)

HSP 1 Score: 534.6 bits (1376), Expect = 4.0e-152
Identity = 257/318 (80.82%), Postives = 283/318 (88.99%), Query Frame = 1


Query: 1   MPKKRKHSETLPIVSVKK-DEGAPERPKRTLTGWKDK-EVAKETESGSDHAVFRNKEKVL 60
           M +KRKHSET     VKK DE AP+RPKRTL GWKDK E   E       + F+NKEKVL
Sbjct: 1   MGRKRKHSETEAPAPVKKSDEPAPDRPKRTLLGWKDKSEGEAEKAKALTSSGFKNKEKVL 60

Query: 61  VTCSRRINFRYRHLMLNVVSLLPHCKKDNKVESRSSKGATLNELVELKGCCSCLFFECRK 120
           VTCSRRI+FRYR LMLN+VSLLPHCKKD+KVE++SSKGATLNEL+ELK   SCLFFECRK
Sbjct: 61  VTCSRRISFRYRSLMLNIVSLLPHCKKDSKVEAKSSKGATLNELIELKNSNSCLFFECRK 120

Query: 121 HKDLYLWMSKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLSFSSNFDKDVHWKLLK 180
           HKDLY+WM K P+GPSVKFLV AVH MEE+KLTGNHLKGSRPLL+FSSNFDKD HWKLLK
Sbjct: 121 HKDLYMWMVKSPNGPSVKFLVKAVHAMEEMKLTGNHLKGSRPLLTFSSNFDKDAHWKLLK 180

Query: 181 EIIIQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKVARGGLDKMTL 240
           E++ Q+FG PKEHR SKPYHDHVFVFSIVD+HIWFRNYQISVPHNESDK+A+GGLDKMTL
Sbjct: 181 EMLTQVFGIPKEHRKSKPYHDHVFVFSIVDEHIWFRNYQISVPHNESDKIAKGGLDKMTL 240

Query: 241 IEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRKM 300
           IEVGPRFCLNPIKIF GSFGGPTLYENPLYVSPNQIRALEK+ KAGK++KK+KAKTR+KM
Sbjct: 241 IEVGPRFCLNPIKIFAGSFGGPTLYENPLYVSPNQIRALEKRNKAGKFAKKIKAKTRKKM 300

Query: 301 HELSNPLEPDEFADMWKE 317
           HELSNPLEPDEFADMWK+
Sbjct: 301 HELSNPLEPDEFADMWKD 318

[Close]

BLAST of Cp4.1LG04g00670 vs. NCBI nr
Match: gi|659099573|ref|XP_008450669.1| (PREDICTED: ribosome biogenesis protein BRX1-like [Cucumis melo])

HSP 1 Score: 623.2 bits (1606), Expect = 2.4e-175
Identity = 299/316 (94.62%), Postives = 308/316 (97.47%), Query Frame = 1


Query: 1   MPKKRKHSETLPIVSVKKDEGAPERPKRTLTGWKDKEVAKETESGSDHAVFRNKEKVLVT 60
           M KKRKHSET+P VSVKKDE A ERPKRTL GWKDKEV K++E+GSDHAVFRNKEKVLVT
Sbjct: 1   MAKKRKHSETVPTVSVKKDENALERPKRTLMGWKDKEVTKKSEAGSDHAVFRNKEKVLVT 60

Query: 61  CSRRINFRYRHLMLNVVSLLPHCKKDNKVESRSSKGATLNELVELKGCCSCLFFECRKHK 120
           CSRRINFRYRHLMLN+VSLLPHCKKDNKVESRSSKGATLNELVELKGC S LFFECRKHK
Sbjct: 61  CSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSSKGATLNELVELKGCSSSLFFECRKHK 120

Query: 121 DLYLWMSKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLSFSSNFDKDVHWKLLKEI 180
           DLYLWM+KCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRP+L+FSSNFDKDVHWKLLKE+
Sbjct: 121 DLYLWMAKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEM 180

Query: 181 IIQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKVARGGLDKMTLIE 240
           IIQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKVARGGLDKMTLIE
Sbjct: 181 IIQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKVARGGLDKMTLIE 240

Query: 241 VGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRKMHE 300
           VGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRKMHE
Sbjct: 241 VGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRKMHE 300

Query: 301 LSNPLEPDEFADMWKE 317
           LSNPLEPDEFADMWKE
Sbjct: 301 LSNPLEPDEFADMWKE 316

[Close]

BLAST of Cp4.1LG04g00670 vs. NCBI nr
Match: gi|778662534|ref|XP_011659901.1| (PREDICTED: LOW QUALITY PROTEIN: ribosome biogenesis protein BRX1-like [Cucumis sativus])

HSP 1 Score: 606.7 bits (1563), Expect = 2.3e-170
Identity = 293/316 (92.72%), Postives = 303/316 (95.89%), Query Frame = 1


Query: 1   MPKKRKHSETLPIVSVKKDEGAPERPKRTLTGWKDKEVAKETESGSDHAVFRNKEKVLVT 60
           M KKRKHSE+LP VSVKKD+ APERPKRTL GWKDK+V KE E GSDHAVFRNKEKVL+T
Sbjct: 1   MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKEIEVGSDHAVFRNKEKVLIT 60

Query: 61  CSRRINFRYRHLMLNVVSLLPHCKKDNKVESRSSKGATLNELVELKGCCSCLFFECRKHK 120
           CSRRINFRY HLMLN+VSLLPHCKKDNKVE RSSKGATLNELVELKGC S LFFECRKHK
Sbjct: 61  CSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSSKGATLNELVELKGCSSSLFFECRKHK 120

Query: 121 DLYLWMSKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLSFSSNFDKDVHWKLLKEI 180
           DLYL M+KCPSGPSVKFLVNA+HTMEELKLTGNHLKGSRP+L+FSSNFDKDVH KLLKE+
Sbjct: 121 DLYLCMAKCPSGPSVKFLVNAMHTMEELKLTGNHLKGSRPILTFSSNFDKDVHXKLLKEM 180

Query: 181 IIQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKVARGGLDKMTLIE 240
           IIQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKVARGGLDKMTLIE
Sbjct: 181 IIQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKVARGGLDKMTLIE 240

Query: 241 VGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRKMHE 300
           VGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRKMHE
Sbjct: 241 VGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRKMHE 300

Query: 301 LSNPLEPDEFADMWKE 317
           LSNPLEPDEFADMWKE
Sbjct: 301 LSNPLEPDEFADMWKE 316

[Close]

BLAST of Cp4.1LG04g00670 vs. NCBI nr
Match: gi|590608740|ref|XP_007021346.1| (Ribosome biogenesis protein brix, putative [Theobroma cacao])

HSP 1 Score: 577.0 bits (1486), Expect = 2.0e-161
Identity = 277/319 (86.83%), Postives = 295/319 (92.48%), Query Frame = 1


Query: 1   MPKKRKHSETLPIVSVKKDEGAPERPKRTLTGWKDKE-VAKETESGSDHA--VFRNKEKV 60
           M KKRK SET       KDEGAPERPKRTL GWKDKE VAK+TES  D +  VFRNKEKV
Sbjct: 1   MGKKRKQSETQTAEPTNKDEGAPERPKRTLVGWKDKEEVAKQTESNPDSSSQVFRNKEKV 60

Query: 61  LVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVESRSSKGATLNELVELKGCCSCLFFECR 120
           +VTCSRRIN+RYRHLMLN+VSLLPHCKKDNKVES+SSKGATLNEL+EL GC SCLFFECR
Sbjct: 61  MVTCSRRINYRYRHLMLNMVSLLPHCKKDNKVESKSSKGATLNELIELSGCSSCLFFECR 120

Query: 121 KHKDLYLWMSKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLSFSSNFDKDVHWKLL 180
           KH+DLYLWM+K PSGPSVKFLVNAVHTMEELKLTGNHLKGSRPLL+FS NF+KD HWKLL
Sbjct: 121 KHQDLYLWMAKSPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSGNFEKDAHWKLL 180

Query: 181 KEIIIQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKVARGGLDKMT 240
           KE+I+QIFGTPKEHR SKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDK+ RGGLDKMT
Sbjct: 181 KEMIMQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKMVRGGLDKMT 240

Query: 241 LIEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRK 300
           L+EVGPRFCLNPIKIFGGSFGGPTLYENP YVSPNQIRALEK+QKAGKY+KKVKAKTRRK
Sbjct: 241 LVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKRQKAGKYAKKVKAKTRRK 300

Query: 301 MHELSNPLEPDEFADMWKE 317
           MHELSNPLEPDEFADMW+E
Sbjct: 301 MHELSNPLEPDEFADMWRE 319

[Close]

BLAST of Cp4.1LG04g00670 vs. NCBI nr
Match: gi|823198009|ref|XP_012434459.1| (PREDICTED: ribosome biogenesis protein BRX1 [Gossypium raimondii])

HSP 1 Score: 572.0 bits (1473), Expect = 6.4e-160
Identity = 274/318 (86.16%), Postives = 295/318 (92.77%), Query Frame = 1


Query: 1   MPKKRKHSETLPIVSVKKDEGAPERPKRTLTGWKDKE-VAKETESGSDHA-VFRNKEKVL 60
           M KKRKHSET      KKDE APERPKR+L GWKDKE V ++TES +D   VFRNKEKV+
Sbjct: 1   MGKKRKHSETQTAEPKKKDEAAPERPKRSLFGWKDKEEVQQQTESNTDPPQVFRNKEKVM 60

Query: 61  VTCSRRINFRYRHLMLNVVSLLPHCKKDNKVESRSSKGATLNELVELKGCCSCLFFECRK 120
           VTCSRRIN+RYRHLMLN+VSLLPHCKKDNKVESRSSKGATLNEL+EL+GC S LFFECRK
Sbjct: 61  VTCSRRINYRYRHLMLNMVSLLPHCKKDNKVESRSSKGATLNELIELRGCSSALFFECRK 120

Query: 121 HKDLYLWMSKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLSFSSNFDKDVHWKLLK 180
           H+DLYLWM++CP+GPSVKFLVNAVHTMEELKLTGNHLKGSRPLL+FSSNF+KD HWKLLK
Sbjct: 121 HQDLYLWMARCPNGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFEKDAHWKLLK 180

Query: 181 EIIIQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKVARGGLDKMTL 240
           E+IIQIFGTPKEHR SKPYHDHVFVFSI DDHIWFRNYQISVPHNESDK+ RGGLDKMTL
Sbjct: 181 EMIIQIFGTPKEHRKSKPYHDHVFVFSIADDHIWFRNYQISVPHNESDKMVRGGLDKMTL 240

Query: 241 IEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRKM 300
           +EVGPRFCLNPIKIF GSFGGPTLYENP YVSPNQIRALEK+QKAGKY+KKVKAKTRRKM
Sbjct: 241 VEVGPRFCLNPIKIFAGSFGGPTLYENPFYVSPNQIRALEKRQKAGKYAKKVKAKTRRKM 300

Query: 301 HELSNPLEPDEFADMWKE 317
           HELSNPLEPDEFADMW+E
Sbjct: 301 HELSNPLEPDEFADMWRE 318

[Close]

BLAST of Cp4.1LG04g00670 vs. NCBI nr
Match: gi|729347491|ref|XP_010542279.1| (PREDICTED: ribosome biogenesis protein BRX1-like [Tarenaya hassleriana])

HSP 1 Score: 568.5 bits (1464), Expect = 7.1e-159
Identity = 271/316 (85.76%), Postives = 289/316 (91.46%), Query Frame = 1


Query: 1   MPKKRKHSETLPIVSVKKDEGAPERPKRTLTGWKDKEVAKETESGSDHAVFRNKEKVLVT 60
           M KKRKHSET      KK+E APERPKRTL GWKDK         S  +VFRNKEKVLVT
Sbjct: 1   MGKKRKHSETEAPAPAKKNEDAPERPKRTLLGWKDKNEVAVKSDPSSSSVFRNKEKVLVT 60

Query: 61  CSRRINFRYRHLMLNVVSLLPHCKKDNKVESRSSKGATLNELVELKGCCSCLFFECRKHK 120
           CSRRINFRYRHLMLN+VSLLPHCKKD+KVE++SSKGATLNELVELKGC SCLFFECRKH+
Sbjct: 61  CSRRINFRYRHLMLNMVSLLPHCKKDSKVEAKSSKGATLNELVELKGCSSCLFFECRKHQ 120

Query: 121 DLYLWMSKCPSGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLSFSSNFDKDVHWKLLKEI 180
           DLYLWM K P GPSVKFLVNAVHTMEELKLTGNHLKGSRPLL+FSSNF+KDVHWKLLKE+
Sbjct: 121 DLYLWMVKSPQGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFEKDVHWKLLKEM 180

Query: 181 IIQIFGTPKEHRHSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKVARGGLDKMTLIE 240
           +IQIFGTPKEHR SKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDK+ARGGLDKMTL+E
Sbjct: 181 LIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKIARGGLDKMTLVE 240

Query: 241 VGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALEKKQKAGKYSKKVKAKTRRKMHE 300
           VGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRA+EK+ KAGK++KKVKAKTRRKMHE
Sbjct: 241 VGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRAMEKRNKAGKFAKKVKAKTRRKMHE 300

Query: 301 LSNPLEPDEFADMWKE 317
           LSNPLEPDEFA MWK+
Sbjct: 301 LSNPLEPDEFAGMWKD 316

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g00670 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BRX1_RAT	3.4e-68	46.15	Ribosome biogenesis protein BRX1 homolog OS=Rattus norvegicus GN=Brix1 PE=2 SV=1	[more]
BRX1_MOUSE	2.2e-67	45.40	Ribosome biogenesis protein BRX1 homolog OS=Mus musculus GN=Brix1 PE=1 SV=3	[more]
BRX1_HUMAN	3.7e-67	45.89	Ribosome biogenesis protein BRX1 homolog OS=Homo sapiens GN=BRIX1 PE=1 SV=2	[more]
BRX1_PONAB	6.4e-67	45.57	Ribosome biogenesis protein BRX1 homolog OS=Pongo abelii GN=BRIX1 PE=2 SV=1	[more]
BRX1_BOVIN	6.4e-67	45.43	Ribosome biogenesis protein BRX1 homolog OS=Bos taurus GN=BRIX1 PE=2 SV=1	[more]

BLAST of Cp4.1LG04g00670 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061F737_THECC	1.4e-161	86.83	Ribosome biogenesis protein brix, putative OS=Theobroma cacao GN=TCM_031378 PE=4...	[more]
A0A0B0NEE6_GOSAR	4.5e-160	86.16	Ribosome biogenesis BRX1 OS=Gossypium arboreum GN=F383_18642 PE=4 SV=1	[more]
A0A0D2PI01_GOSRA	4.5e-160	86.16	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G319600 PE=4 SV=1	[more]
A0A067JSR7_JATCU	8.4e-159	87.38	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22878 PE=4 SV=1	[more]
B9N1J9_POPTR	7.1e-158	86.44	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s41350g PE=4 SV=1	[more]

BLAST of Cp4.1LG04g00670 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G15460.1	2.8e-153	81.01	Ribosomal RNA processing Brix domain protein	[more]
AT1G52930.1	4.0e-152	80.82	Ribosomal RNA processing Brix domain protein	[more]

BLAST of Cp4.1LG04g00670 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659099573\|ref\|XP_008450669.1\|	2.4e-175	94.62	PREDICTED: ribosome biogenesis protein BRX1-like [Cucumis melo]	[more]
gi\|778662534\|ref\|XP_011659901.1\|	2.3e-170	92.72	PREDICTED: LOW QUALITY PROTEIN: ribosome biogenesis protein BRX1-like [Cucumis s...	[more]
gi\|590608740\|ref\|XP_007021346.1\|	2.0e-161	86.83	Ribosome biogenesis protein brix, putative [Theobroma cacao]	[more]
gi\|823198009\|ref\|XP_012434459.1\|	6.4e-160	86.16	PREDICTED: ribosome biogenesis protein BRX1 [Gossypium raimondii]	[more]
gi\|729347491\|ref\|XP_010542279.1\|	7.1e-159	85.76	PREDICTED: ribosome biogenesis protein BRX1-like [Tarenaya hassleriana]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR026532	BRX1
IPR007109	Brix
IPR004154	Anticodon-bd

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG04g00670.1	Cp4.1LG04g00670.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004154	Anticodon-binding	unknown	SSF52954	Class II aaRS ABD-related	coord: 56..255 score: 5.1
IPR007109	Brix domain	PFAM	PF04427	Brix	coord: 62..251 score: 3.4
IPR007109	Brix domain	SMART	SM00879	Brix_2	coord: 58..252 score: 2.9
IPR007109	Brix domain	PROFILE	PS50833	BRIX	coord: 55..258 score: 32
IPR026532	Ribosome biogenesis protein BRX1	PANTHER	PTHR13634	RIBOSOME BIOGENESIS PROTEIN BRIX	coord: 2..316 score: 9.2E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG04g00670	CmoCh11G011570	Cucurbita moschata (Rifu)	cmocpeB127
Cp4.1LG04g00670	Cla005250	Watermelon (97103) v1	cpewmB643
Cp4.1LG04g00670	Csa1G570210	Cucumber (Chinese Long) v2	cpecuB656
Cp4.1LG04g00670	MELO3C015338	Melon (DHL92) v3.5.1	cpemeB622
Cp4.1LG04g00670	ClCG03G016840	Watermelon (Charleston Gray)	cpewcgB600
Cp4.1LG04g00670	CSPI01G26790	Wild cucumber (PI 183967)	cpecpiB659
Cp4.1LG04g00670	Lsi06G001470	Bottle gourd (USVL1VR-Ls)	cpelsiB564
Cp4.1LG04g00670	MELO3C015338.2	Melon (DHL92) v3.6.1	cpemedB735
Cp4.1LG04g00670	CsaV3_1G039130	Cucumber (Chinese Long) v3	cpecucB0817
Cp4.1LG04g00670	Bhi02G001671	Wax gourd	cpewgoB0889
Cp4.1LG04g00670	CsGy1G026020	Cucumber (Gy14) v2	cgybcpeB129
Cp4.1LG04g00670	Carg21147	Silver-seed gourd	carcpeB0781

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG04g00670	Wax gourd	cpewgoB0904
Cp4.1LG04g00670	Cucurbita pepo (Zucchini)	cpecpeB366
Cp4.1LG04g00670	Cucurbita maxima (Rimu)	cmacpeB089
Cp4.1LG04g00670	Cucurbita maxima (Rimu)	cmacpeB147
Cp4.1LG04g00670	Cucurbita moschata (Rifu)	cmocpeB065