Lsi05G016640 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi05G016640
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionAuxin-responsive protein
Locationchr05 : 24301953 .. 24303442 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTATTTTATTTATTATTTATACTATTTTATACATGTAGAGAGAGATTTGTGTAATGAATTAGGTTAGATCTGGAAACACAAGAATCCTTGATGCCAGAATATGTGGGATCATTTGGAATCATTAACAAAGGCACATTACAGCCTAGCTAGGCTTTATTATTATTATTATTCTTATTATTATTTCTCATAAAAATTATTTTATGTTTTCAATTAAATAATTTAATTAACCAAGTGTTAGCTTTTTTTTTTTTTTAATTGGGTGTTAATGATAATGTTTAATAATAAAATGTAAAGGTGACTATGGGGCCCAAGGAATGATAGACTTCATGAATGAGAGCAAGTTGATGGATCTTCTGAACAGCTCTGAGTATGTGCCATCCTATGAAGATAAGGATGGTGATTGGATGCTGGTGGGAGATGTACCTTGGGAGTAAGTTCTTATTCCAACCAAAACCTTCCTTATCTCCATAACCAATCAACCACCAATTATTTTTTTATCCATTCTCCTAATTATATCTTAATCCACTTTTGTATTTTAGGATGTTTGTTGATTCATGCAAGCGCTTAAGGATAATGAAGGGATCAGAAGCTATTGGACTCGGTATGTATATTTCAAATTTTTATCATAAATTTTATTTATTTATTTGCATACAATTAATTAAATATAAAATTATATGATATATTGAGTTTGAGCTAATAAAATTATAATACTAGAGTTATTTCATTTCTTATAAATAACAAAGATAATGGTAATTTGCCAACCATGCTTATAATATATGTTTGATCTAAAGGATGGATATATTACTTATAAGTATAATATTAAAGAATTTGAATTATGGGGTCCATACATTTCATCATGATCAATCCTTTTAAAGTGTCATTCAAAGAAAGTACATTGAAATCCCAAAGGAATTAAAAACCTTATGATAATAATAATAATAATAAGGTTTGATAAAGATATATATAAAAGAGAAAAGAAAGAAAGAAGTTTTGCTTTTTAACCCCTAAAGTAATTTTTGTAAAATAAAATTTCAGCCCCAAGAGCAATGGAAAAATGCAAAAGCAGAAGCTGAAGAGAAGGCTTTTGGGGGAGGTGGGTGGCTCCATGATTTGGTCGACCCATAATTAAGCAAGAAAGAAGGGGGCAAGACAGATGGATCGAGCATATGGATCTTGTTTGATTGCAATATCTGTACTTTTTTTTTTTTTTTGGCTCTTTTTTTTTTATTTTAATTTTTAATGTTATGATTCGTATATAGATATTAAAAAGAGATTTGGGACATTAATTAATTTGTAATAGCCAACAAGAAAAAATAAACTCTCTCTCCTAGTACTCTGTCTGGCTGTTTGTTTGTTTTGCTTTTAAATGTTTGTTTATTACAAAAAGAACTATAATGGGCTTTGCTTTTATATGCCTTCTCTCTTCTTTTTAATTTTTTTTGCTTTGTTTTCTTTTGTGTTGGTTGTTAAAGATTATTTTGATTCC

mRNA sequence

ATGGGTGACTATGGGGCCCAAGGAATGATAGACTTCATGAATGAGAGCAAGTTGATGGATCTTCTGAACAGCTCTGAGTATGTGCCATCCTATGAAGATAAGGATGGTGATTGGATGCTGGTGGGAGATGTACCTTGGGAGATGTTTGTTGATTCATGCAAGCGCTTAAGGATAATGAAGGGATCAGAAGCTATTGGACTCGGTATCCCCAAGAGCAATGGAAAAATGCAAAAGCAGAAGCTGAAGAGAAGGCTTTTGGGGGAGGTGGGTGGCTCCATGATTTGGTCGACCCATAATTAAGCAAGAAAGAAGGGGGCAAGACAGATGGATCGAGCATATGGATCTTGTTTGATTGCAATATCTGTACTTTTTTTTTTTTTTTGGCTCTTTTTTTTTTATTTTAATTTTTAATGTTATGATTCGTATATAGATATTAAAAAGAGATTTGGGACATTAATTAATTTGTAATAGCCAACAAGAAAAAATAAACTCTCTCTCCTAGTACTCTGTCTGGCTGTTTGTTTGTTTTGCTTTTAAATGTTTGTTTATTACAAAAAGAACTATAATGGGCTTTGCTTTTATATGCCTTCTCTCTTCTTTTTAATTTTTTTTGCTTTGTTTTCTTTTGTGTTGGTTGTTAAAGATTATTTTGATTCC

Coding sequence (CDS)

ATGGGTGACTATGGGGCCCAAGGAATGATAGACTTCATGAATGAGAGCAAGTTGATGGATCTTCTGAACAGCTCTGAGTATGTGCCATCCTATGAAGATAAGGATGGTGATTGGATGCTGGTGGGAGATGTACCTTGGGAGATGTTTGTTGATTCATGCAAGCGCTTAAGGATAATGAAGGGATCAGAAGCTATTGGACTCGGTATCCCCAAGAGCAATGGAAAAATGCAAAAGCAGAAGCTGAAGAGAAGGCTTTTGGGGGAGGTGGGTGGCTCCATGATTTGGTCGACCCATAATTAA

Protein sequence

MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLGIPKSNGKMQKQKLKRRLLGEVGGSMIWSTHN
Homology
[Close]
BLAST of Lsi05G016640 vs. Swiss-Prot
Match: IAA7_ARATH (Auxin-responsive protein IAA7 OS=Arabidopsis thaliana GN=IAA7 PE=1 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 4.6e-32
Identity = 66/80 (82.50%), Postives = 73/80 (91.25%), Query Frame = 1 

Query: 1   MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK 60
           MG+YGAQGMIDFMNESKLM+LLNSSEYVPSYEDKDGDWMLVGDVPWEMFV+SCKRLRIMK
Sbjct: 164 MGNYGAQGMIDFMNESKLMNLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVESCKRLRIMK 223

Query: 61  GSEAIGLGIPKSNGKMQKQK 81
           GSEA+GL  P++  K  K +
Sbjct: 224 GSEAVGLA-PRAMEKYCKNR 242

[Close]
BLAST of Lsi05G016640 vs. Swiss-Prot
Match: IAA14_ARATH (Auxin-responsive protein IAA14 OS=Arabidopsis thaliana GN=IAA14 PE=1 SV=2)

HSP 1 Score: 136.7 bits (343), Expect = 1.3e-31
Identity = 65/79 (82.28%), Postives = 71/79 (89.87%), Query Frame = 1 

Query: 1   MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK 60
           MG YGAQGMIDFMNESK+MDLLNSSEYVPSYEDKDGDWMLVGDVPW MFV+SCKRLRIMK
Sbjct: 150 MGSYGAQGMIDFMNESKVMDLLNSSEYVPSYEDKDGDWMLVGDVPWPMFVESCKRLRIMK 209

Query: 61  GSEAIGLGIPKSNGKMQKQ 80
           GSEAIGL  P++  K + +
Sbjct: 210 GSEAIGLA-PRAMEKFKNR 227

[Close]
BLAST of Lsi05G016640 vs. Swiss-Prot
Match: IAA16_ARATH (Auxin-responsive protein IAA16 OS=Arabidopsis thaliana GN=IAA16 PE=1 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.6e-29
Identity = 58/67 (86.57%), Postives = 64/67 (95.52%), Query Frame = 1 

Query: 1   MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK 60
           +G+YG QGM DFMNESKL+DLLN S+YVP+YEDKDGDWMLVGDVPWEMFVDSCKR+RIMK
Sbjct: 158 IGNYGPQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRIRIMK 217

Query: 61  GSEAIGL 68
           GSEAIGL
Sbjct: 218 GSEAIGL 224

[Close]
BLAST of Lsi05G016640 vs. Swiss-Prot
Match: AUX28_SOYBN (Auxin-induced protein AUX28 OS=Glycine max GN=AUX28 PE=2 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 4.1e-28
Identity = 59/79 (74.68%), Postives = 69/79 (87.34%), Query Frame = 1 

Query: 2   GDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKG 61
           G+  +QGM DFMNESKL DLLNSS+YVP+YEDKDGDWMLVGDVPWEMFV+SCKRLRIMKG
Sbjct: 164 GNCESQGMKDFMNESKLNDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKG 223

Query: 62  SEAIGLGI-PKSNGKMQKQ 80
            EAIGLG+ P++  K + +
Sbjct: 224 KEAIGLGLAPRAMAKCKNR 242

[Close]
BLAST of Lsi05G016640 vs. Swiss-Prot
Match: IAA17_ARATH (Auxin-responsive protein IAA17 OS=Arabidopsis thaliana GN=IAA17 PE=1 SV=2)

HSP 1 Score: 119.8 bits (299), Expect = 1.7e-26
Identity = 55/68 (80.88%), Postives = 62/68 (91.18%), Query Frame = 1 

Query: 1   MGDYGAQ-GMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIM 60
           MG +G + GMIDFMNE KLMDL+NS +YVPSYEDKDGDWMLVGDVPW MFVD+CKRLR+M
Sbjct: 150 MGKHGGEEGMIDFMNERKLMDLVNSWDYVPSYEDKDGDWMLVGDVPWPMFVDTCKRLRLM 209

Query: 61  KGSEAIGL 68
           KGS+AIGL
Sbjct: 210 KGSDAIGL 217

[Close]
BLAST of Lsi05G016640 vs. TrEMBL
Match: W9QE85_9ROSA (Auxin-responsive protein OS=Morus notabilis GN=L484_016332 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 9.4e-32
Identity = 66/69 (95.65%), Postives = 69/69 (100.00%), Query Frame = 1 

Query: 1   MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK 60
           MG+YGAQGMIDFMNESKLMDLLNSSEYVP+YEDKDGDWMLVGDVPWEMFVDSCKRLRIMK
Sbjct: 177 MGNYGAQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK 236

Query: 61  GSEAIGLGI 70
           GSEAIGLG+
Sbjct: 237 GSEAIGLGL 245

[Close]
BLAST of Lsi05G016640 vs. TrEMBL
Match: M4EYJ4_BRARP (Auxin-responsive protein OS=Brassica rapa subsp. pekinensis PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 3.6e-31
Identity = 69/80 (86.25%), Postives = 73/80 (91.25%), Query Frame = 1 

Query: 1   MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK 60
           MG+YGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK
Sbjct: 163 MGNYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK 222

Query: 61  GSEAIGLGIPKSNGKMQKQK 81
           GSEAIGL  P++  K  K +
Sbjct: 223 GSEAIGLA-PRAMEKYCKNR 241

[Close]
BLAST of Lsi05G016640 vs. TrEMBL
Match: B9HUN7_POPTR (Auxin-responsive protein OS=Populus trichocarpa GN=POPTR_0010s08880g PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 3.6e-31
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 1 

Query: 1   MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK 60
           MG+YGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK
Sbjct: 199 MGNYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK 258

Query: 61  GSEAIGL 68
           GSEAIGL
Sbjct: 259 GSEAIGL 265

[Close]
BLAST of Lsi05G016640 vs. TrEMBL
Match: A0A141PG51_9ROSI (Auxin-responsive protein OS=Populus davidiana x Populus alba var. pyramidalis PE=2 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 4.7e-31
Identity = 65/67 (97.01%), Postives = 67/67 (100.00%), Query Frame = 1 

Query: 1   MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK 60
           MG+YGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK
Sbjct: 170 MGNYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK 229

Query: 61  GSEAIGL 68
           GSEA+GL
Sbjct: 230 GSEAVGL 236

[Close]
BLAST of Lsi05G016640 vs. TrEMBL
Match: A0A0D2Q3W0_GOSRA (Auxin-responsive protein OS=Gossypium raimondii GN=B456_001G242900 PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 6.1e-31
Identity = 65/82 (79.27%), Postives = 76/82 (92.68%), Query Frame = 1 

Query: 1   MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK 60
           +G+ G+QG+ DFMNESKLMDLLN S+YVP+YEDKDGDWMLVGDVPWEMFV+SCKRLRIMK
Sbjct: 175 IGNCGSQGIKDFMNESKLMDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMK 234

Query: 61  GSEAIGLGIPKSNGKMQKQKLK 83
           G+EAIGLG  KS G+MQ++KLK
Sbjct: 235 GTEAIGLGYTKSCGEMQEEKLK 256

[Close]
BLAST of Lsi05G016640 vs. TAIR10
Match: AT3G23050.1 (AT3G23050.1 indole-3-acetic acid 7)

HSP 1 Score: 138.3 bits (347), Expect = 2.6e-33
Identity = 66/80 (82.50%), Postives = 73/80 (91.25%), Query Frame = 1 

Query: 1   MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK 60
           MG+YGAQGMIDFMNESKLM+LLNSSEYVPSYEDKDGDWMLVGDVPWEMFV+SCKRLRIMK
Sbjct: 164 MGNYGAQGMIDFMNESKLMNLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVESCKRLRIMK 223

Query: 61  GSEAIGLGIPKSNGKMQKQK 81
           GSEA+GL  P++  K  K +
Sbjct: 224 GSEAVGLA-PRAMEKYCKNR 242

[Close]
BLAST of Lsi05G016640 vs. TAIR10
Match: AT4G14550.1 (AT4G14550.1 indole-3-acetic acid inducible 14)

HSP 1 Score: 136.7 bits (343), Expect = 7.6e-33
Identity = 65/79 (82.28%), Postives = 71/79 (89.87%), Query Frame = 1 

Query: 1   MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK 60
           MG YGAQGMIDFMNESK+MDLLNSSEYVPSYEDKDGDWMLVGDVPW MFV+SCKRLRIMK
Sbjct: 150 MGSYGAQGMIDFMNESKVMDLLNSSEYVPSYEDKDGDWMLVGDVPWPMFVESCKRLRIMK 209

Query: 61  GSEAIGLGIPKSNGKMQKQ 80
           GSEAIGL  P++  K + +
Sbjct: 210 GSEAIGLA-PRAMEKFKNR 227

[Close]
BLAST of Lsi05G016640 vs. TAIR10
Match: AT3G04730.1 (AT3G04730.1 indoleacetic acid-induced protein 16)

HSP 1 Score: 129.8 bits (325), Expect = 9.3e-31
Identity = 58/67 (86.57%), Postives = 64/67 (95.52%), Query Frame = 1 

Query: 1   MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK 60
           +G+YG QGM DFMNESKL+DLLN S+YVP+YEDKDGDWMLVGDVPWEMFVDSCKR+RIMK
Sbjct: 158 IGNYGPQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRIRIMK 217

Query: 61  GSEAIGL 68
           GSEAIGL
Sbjct: 218 GSEAIGL 224

[Close]
BLAST of Lsi05G016640 vs. TAIR10
Match: AT1G04250.1 (AT1G04250.1 AUX/IAA transcriptional regulator family protein)

HSP 1 Score: 119.8 bits (299), Expect = 9.6e-28
Identity = 55/68 (80.88%), Postives = 62/68 (91.18%), Query Frame = 1 

Query: 1   MGDYGAQ-GMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIM 60
           MG +G + GMIDFMNE KLMDL+NS +YVPSYEDKDGDWMLVGDVPW MFVD+CKRLR+M
Sbjct: 150 MGKHGGEEGMIDFMNERKLMDLVNSWDYVPSYEDKDGDWMLVGDVPWPMFVDTCKRLRLM 209

Query: 61  KGSEAIGL 68
           KGS+AIGL
Sbjct: 210 KGSDAIGL 217

[Close]
BLAST of Lsi05G016640 vs. TAIR10
Match: AT5G65670.1 (AT5G65670.1 indole-3-acetic acid inducible 9)

HSP 1 Score: 100.5 bits (249), Expect = 6.0e-22
Identity = 49/82 (59.76%), Postives = 63/82 (76.83%), Query Frame = 1 

Query: 2   GDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKG 61
           G  GA G  D ++E+KL DLLN  +YV +YEDKDGDWMLVGDVPWEMF+D CK+L+IMKG
Sbjct: 260 GSNGAAGK-DMLSETKLKDLLNGKDYVLTYEDKDGDWMLVGDVPWEMFIDVCKKLKIMKG 319

Query: 62  SEAIGL-GIPKSNGKMQKQKLK 83
            +AIGL   P++   M+K K++
Sbjct: 320 CDAIGLAAAPRA---MEKSKMR 337

[Close]
BLAST of Lsi05G016640 vs. NCBI nr
Match: gi|703066636|ref|XP_010087762.1| (Auxin-responsive protein IAA7 [Morus notabilis])

HSP 1 Score: 144.1 bits (362), Expect = 1.3e-31
Identity = 66/69 (95.65%), Postives = 69/69 (100.00%), Query Frame = 1 

Query: 1   MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK 60
           MG+YGAQGMIDFMNESKLMDLLNSSEYVP+YEDKDGDWMLVGDVPWEMFVDSCKRLRIMK
Sbjct: 177 MGNYGAQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK 236

Query: 61  GSEAIGLGI 70
           GSEAIGLG+
Sbjct: 237 GSEAIGLGL 245

[Close]
BLAST of Lsi05G016640 vs. NCBI nr
Match: gi|923626635|ref|XP_013749219.1| (PREDICTED: auxin-responsive protein IAA7 [Brassica napus])

HSP 1 Score: 142.1 bits (357), Expect = 5.1e-31
Identity = 69/80 (86.25%), Postives = 73/80 (91.25%), Query Frame = 1 

Query: 1   MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK 60
           MG+YGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK
Sbjct: 163 MGNYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK 222

Query: 61  GSEAIGLGIPKSNGKMQKQK 81
           GSEAIGL  P++  K  K +
Sbjct: 223 GSEAIGLA-PRAMEKYCKNR 241

[Close]
BLAST of Lsi05G016640 vs. NCBI nr
Match: gi|224111068|ref|XP_002315736.1| (aux/IAA family protein [Populus trichocarpa])

HSP 1 Score: 142.1 bits (357), Expect = 5.1e-31
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 1 

Query: 1   MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK 60
           MG+YGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK
Sbjct: 199 MGNYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK 258

Query: 61  GSEAIGL 68
           GSEAIGL
Sbjct: 259 GSEAIGL 265

[Close]
BLAST of Lsi05G016640 vs. NCBI nr
Match: gi|743859401|ref|XP_011030585.1| (PREDICTED: auxin-responsive protein IAA14-like isoform X1 [Populus euphratica])

HSP 1 Score: 142.1 bits (357), Expect = 5.1e-31
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 1 

Query: 1   MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK 60
           MG+YGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK
Sbjct: 170 MGNYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK 229

Query: 61  GSEAIGL 68
           GSEAIGL
Sbjct: 230 GSEAIGL 236

[Close]
BLAST of Lsi05G016640 vs. NCBI nr
Match: gi|697164451|ref|XP_009591035.1| (PREDICTED: auxin-responsive protein IAA7-like [Nicotiana tomentosiformis])

HSP 1 Score: 142.1 bits (357), Expect = 5.1e-31
Identity = 70/85 (82.35%), Postives = 76/85 (89.41%), Query Frame = 1 

Query: 1   MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK 60
           MG+YGAQGMIDFMNESKLMDLLNSSEYVP+YEDKDGDWMLVGDVPWEMFVDSCKRLRIMK
Sbjct: 147 MGNYGAQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK 206

Query: 61  GSEAIGLGIPKSNGKMQKQKLKRRL 86
           GSEAIGL  P++      +K KRR+
Sbjct: 207 GSEAIGLA-PRA-----MEKCKRRI 225

The following BLAST results are available for this feature:
BLAST of Lsi05G016640 vs. Swiss-Prot
Match NameE-valueIdentityDescription
IAA7_ARATH4.6e-3282.50Auxin-responsive protein IAA7 OS=Arabidopsis thaliana GN=IAA7 PE=1 SV=1[more]
IAA14_ARATH1.3e-3182.28Auxin-responsive protein IAA14 OS=Arabidopsis thaliana GN=IAA14 PE=1 SV=2[more]
IAA16_ARATH1.6e-2986.57Auxin-responsive protein IAA16 OS=Arabidopsis thaliana GN=IAA16 PE=1 SV=1[more]
AUX28_SOYBN4.1e-2874.68Auxin-induced protein AUX28 OS=Glycine max GN=AUX28 PE=2 SV=1[more]
IAA17_ARATH1.7e-2680.88Auxin-responsive protein IAA17 OS=Arabidopsis thaliana GN=IAA17 PE=1 SV=2[more]
BLAST of Lsi05G016640 vs. TrEMBL
Match NameE-valueIdentityDescription
W9QE85_9ROSA9.4e-3295.65Auxin-responsive protein OS=Morus notabilis GN=L484_016332 PE=3 SV=1[more]
M4EYJ4_BRARP3.6e-3186.25Auxin-responsive protein OS=Brassica rapa subsp. pekinensis PE=3 SV=1[more]
B9HUN7_POPTR3.6e-3198.51Auxin-responsive protein OS=Populus trichocarpa GN=POPTR_0010s08880g PE=3 SV=1[more]
A0A141PG51_9ROSI4.7e-3197.01Auxin-responsive protein OS=Populus davidiana x Populus alba var. pyramidalis PE... [more]
A0A0D2Q3W0_GOSRA6.1e-3179.27Auxin-responsive protein OS=Gossypium raimondii GN=B456_001G242900 PE=3 SV=1[more]
BLAST of Lsi05G016640 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G23050.12.6e-3382.50 indole-3-acetic acid 7[more]
AT4G14550.17.6e-3382.28 indole-3-acetic acid inducible 14[more]
AT3G04730.19.3e-3186.57 indoleacetic acid-induced protein 16[more]
AT1G04250.19.6e-2880.88 AUX/IAA transcriptional regulator family protein[more]
AT5G65670.16.0e-2259.76 indole-3-acetic acid inducible 9[more]
BLAST of Lsi05G016640 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|703066636|ref|XP_010087762.1|1.3e-3195.65Auxin-responsive protein IAA7 [Morus notabilis][more]
gi|923626635|ref|XP_013749219.1|5.1e-3186.25PREDICTED: auxin-responsive protein IAA7 [Brassica napus][more]
gi|224111068|ref|XP_002315736.1|5.1e-3198.51aux/IAA family protein [Populus trichocarpa][more]
gi|743859401|ref|XP_011030585.1|5.1e-3198.51PREDICTED: auxin-responsive protein IAA14-like isoform X1 [Populus euphratica][more]
gi|697164451|ref|XP_009591035.1|5.1e-3182.35PREDICTED: auxin-responsive protein IAA7-like [Nicotiana tomentosiformis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR003311AUX_IAA
IPR000270PB1_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009734 auxin-activated signaling pathway
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0005515 protein binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G016640.1Lsi05G016640.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000270PB1 domainPROFILEPS51745PB1coord: 1..61
score: 13
IPR003311AUX/IAA proteinPANTHERPTHR31734FAMILY NOT NAMEDcoord: 1..76
score: 5.6
NoneNo IPR availablePANTHERPTHR31734:SF30AUXIN-RESPONSIVE PROTEIN IAA14-RELATEDcoord: 1..76
score: 5.6
NoneNo IPR availableunknownSSF54277CAD & PB1 domainscoord: 23..60
score: 2.16

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi05G016640CmaCh00G005010Cucurbita maxima (Rimu)cmalsiB010
Lsi05G016640ClCG02G016650Watermelon (Charleston Gray)lsiwcgB331
Lsi05G016640Bhi05G000201Wax gourdlsiwgoB463
Lsi05G016640CsGy3G012680Cucumber (Gy14) v2cgyblsiB196
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi05G016640Cucumber (Chinese Long) v3cuclsiB139
Lsi05G016640Cucumber (Chinese Long) v3cuclsiB228
Lsi05G016640Watermelon (97103) v2lsiwmbB327
Lsi05G016640Watermelon (97103) v2lsiwmbB333
Lsi05G016640Watermelon (97103) v2lsiwmbB341
Lsi05G016640Watermelon (97103) v2lsiwmbB348
Lsi05G016640Wax gourdlsiwgoB465
Lsi05G016640Bottle gourd (USVL1VR-Ls)lsilsiB011
Lsi05G016640Bottle gourd (USVL1VR-Ls)lsilsiB056
Lsi05G016640Bottle gourd (USVL1VR-Ls)lsilsiB157
Lsi05G016640Cucumber (Gy14) v1cgylsiB208
Lsi05G016640Cucumber (Gy14) v1cgylsiB415
Lsi05G016640Cucurbita maxima (Rimu)cmalsiB245
Lsi05G016640Cucurbita maxima (Rimu)cmalsiB356
Lsi05G016640Cucurbita maxima (Rimu)cmalsiB588
Lsi05G016640Cucurbita maxima (Rimu)cmalsiB764
Lsi05G016640Cucurbita maxima (Rimu)cmalsiB839
Lsi05G016640Cucurbita moschata (Rifu)cmolsiB233
Lsi05G016640Cucurbita moschata (Rifu)cmolsiB345
Lsi05G016640Cucurbita moschata (Rifu)cmolsiB569
Lsi05G016640Cucurbita moschata (Rifu)cmolsiB757
Lsi05G016640Cucurbita moschata (Rifu)cmolsiB823
Lsi05G016640Cucurbita pepo (Zucchini)cpelsiB121
Lsi05G016640Cucurbita pepo (Zucchini)cpelsiB267
Lsi05G016640Cucurbita pepo (Zucchini)cpelsiB506
Lsi05G016640Cucurbita pepo (Zucchini)cpelsiB619
Lsi05G016640Cucurbita pepo (Zucchini)cpelsiB714
Lsi05G016640Wild cucumber (PI 183967)cpilsiB125
Lsi05G016640Wild cucumber (PI 183967)cpilsiB129
Lsi05G016640Wild cucumber (PI 183967)cpilsiB207
Lsi05G016640Cucumber (Chinese Long) v2culsiB127
Lsi05G016640Cucumber (Chinese Long) v2culsiB130
Lsi05G016640Cucumber (Chinese Long) v2culsiB209
Lsi05G016640Melon (DHL92) v3.5.1lsimeB378
Lsi05G016640Watermelon (Charleston Gray)lsiwcgB335
Lsi05G016640Watermelon (Charleston Gray)lsiwcgB343
Lsi05G016640Watermelon (Charleston Gray)lsiwcgB349
Lsi05G016640Watermelon (97103) v1lsiwmB359
Lsi05G016640Watermelon (97103) v1lsiwmB365
Lsi05G016640Watermelon (97103) v1lsiwmB382
Lsi05G016640Cucumber (Gy14) v2cgyblsiB115
Lsi05G016640Cucumber (Gy14) v2cgyblsiB118
Lsi05G016640Cucumber (Gy14) v2cgyblsiB119
Lsi05G016640Melon (DHL92) v3.6.1lsimedB375
Lsi05G016640Melon (DHL92) v3.6.1lsimedB380
Lsi05G016640Melon (DHL92) v3.6.1lsimedB381
Lsi05G016640Melon (DHL92) v3.6.1lsimedB396
Lsi05G016640Silver-seed gourdcarlsiB206
Lsi05G016640Silver-seed gourdcarlsiB210
Lsi05G016640Silver-seed gourdcarlsiB720
Lsi05G016640Silver-seed gourdcarlsiB878