Lsi05G016640.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G016640.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Auxin-responsive protein
Location	chr05 : 24301953 .. 24303442 (+)
Sequence length	657

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTATTTTATTTATTATTTATACTATTTTATACATGTAGAGAGAGATTTGTGTAATGAATTAGGTTAGATCTGGAAACACAAGAATCCTTGATGCCAGAATATGTGGGATCATTTGGAATCATTAACAAAGGCACATTACAGCCTAGCTAGGCTTTATTATTATTATTATTCTTATTATTATTTCTCATAAAAATTATTTTATGTTTTCAATTAAATAATTTAATTAACCAAGTGTTAGCTTTTTTTTTTTTTTAATTGGGTGTTAATGATAATGTTTAATAATAAAATGTAAAGGTGACTATGGGGCCCAAGGAATGATAGACTTCATGAATGAGAGCAAGTTGATGGATCTTCTGAACAGCTCTGAGTATGTGCCATCCTATGAAGATAAGGATGGTGATTGGATGCTGGTGGGAGATGTACCTTGGGAGTAAGTTCTTATTCCAACCAAAACCTTCCTTATCTCCATAACCAATCAACCACCAATTATTTTTTTATCCATTCTCCTAATTATATCTTAATCCACTTTTGTATTTTAGGATGTTTGTTGATTCATGCAAGCGCTTAAGGATAATGAAGGGATCAGAAGCTATTGGACTCGGTATGTATATTTCAAATTTTTATCATAAATTTTATTTATTTATTTGCATACAATTAATTAAATATAAAATTATATGATATATTGAGTTTGAGCTAATAAAATTATAATACTAGAGTTATTTCATTTCTTATAAATAACAAAGATAATGGTAATTTGCCAACCATGCTTATAATATATGTTTGATCTAAAGGATGGATATATTACTTATAAGTATAATATTAAAGAATTTGAATTATGGGGTCCATACATTTCATCATGATCAATCCTTTTAAAGTGTCATTCAAAGAAAGTACATTGAAATCCCAAAGGAATTAAAAACCTTATGATAATAATAATAATAATAAGGTTTGATAAAGATATATATAAAAGAGAAAAGAAAGAAAGAAGTTTTGCTTTTTAACCCCTAAAGTAATTTTTGTAAAATAAAATTTCAGCCCCAAGAGCAATGGAAAAATGCAAAAGCAGAAGCTGAAGAGAAGGCTTTTGGGGGAGGTGGGTGGCTCCATGATTTGGTCGACCCATAATTAAGCAAGAAAGAAGGGGGCAAGACAGATGGATCGAGCATATGGATCTTGTTTGATTGCAATATCTGTACTTTTTTTTTTTTTTTGGCTCTTTTTTTTTTATTTTAATTTTTAATGTTATGATTCGTATATAGATATTAAAAAGAGATTTGGGACATTAATTAATTTGTAATAGCCAACAAGAAAAAATAAACTCTCTCTCCTAGTACTCTGTCTGGCTGTTTGTTTGTTTTGCTTTTAAATGTTTGTTTATTACAAAAAGAACTATAATGGGCTTTGCTTTTATATGCCTTCTCTCTTCTTTTTAATTTTTTTTGCTTTGTTTTCTTTTGTGTTGGTTGTTAAAGATTATTTTGATTCC

mRNA sequence

ATGGGTGACTATGGGGCCCAAGGAATGATAGACTTCATGAATGAGAGCAAGTTGATGGATCTTCTGAACAGCTCTGAGTATGTGCCATCCTATGAAGATAAGGATGGTGATTGGATGCTGGTGGGAGATGTACCTTGGGAGATGTTTGTTGATTCATGCAAGCGCTTAAGGATAATGAAGGGATCAGAAGCTATTGGACTCGGTATCCCCAAGAGCAATGGAAAAATGCAAAAGCAGAAGCTGAAGAGAAGGCTTTTGGGGGAGGTGGGTGGCTCCATGATTTGGTCGACCCATAATTAAGCAAGAAAGAAGGGGGCAAGACAGATGGATCGAGCATATGGATCTTGTTTGATTGCAATATCTGTACTTTTTTTTTTTTTTTGGCTCTTTTTTTTTTATTTTAATTTTTAATGTTATGATTCGTATATAGATATTAAAAAGAGATTTGGGACATTAATTAATTTGTAATAGCCAACAAGAAAAAATAAACTCTCTCTCCTAGTACTCTGTCTGGCTGTTTGTTTGTTTTGCTTTTAAATGTTTGTTTATTACAAAAAGAACTATAATGGGCTTTGCTTTTATATGCCTTCTCTCTTCTTTTTAATTTTTTTTGCTTTGTTTTCTTTTGTGTTGGTTGTTAAAGATTATTTTGATTCC

Coding sequence (CDS)

ATGGGTGACTATGGGGCCCAAGGAATGATAGACTTCATGAATGAGAGCAAGTTGATGGATCTTCTGAACAGCTCTGAGTATGTGCCATCCTATGAAGATAAGGATGGTGATTGGATGCTGGTGGGAGATGTACCTTGGGAGATGTTTGTTGATTCATGCAAGCGCTTAAGGATAATGAAGGGATCAGAAGCTATTGGACTCGGTATCCCCAAGAGCAATGGAAAAATGCAAAAGCAGAAGCTGAAGAGAAGGCTTTTGGGGGAGGTGGGTGGCTCCATGATTTGGTCGACCCATAATTAA

Protein sequence

MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLGIPKSNGKMQKQKLKRRLLGEVGGSMIWSTHN

Homology

[Close]

BLAST of Lsi05G016640.1 vs. Swiss-Prot
Match: IAA7_ARATH (Auxin-responsive protein IAA7 OS=Arabidopsis thaliana GN=IAA7 PE=1 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 4.6e-32
Identity = 66/80 (82.50%), Postives = 73/80 (91.25%), Query Frame = 1


Query: 1   MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK 60
           MG+YGAQGMIDFMNESKLM+LLNSSEYVPSYEDKDGDWMLVGDVPWEMFV+SCKRLRIMK
Sbjct: 164 MGNYGAQGMIDFMNESKLMNLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVESCKRLRIMK 223

Query: 61  GSEAIGLGIPKSNGKMQKQK 81
           GSEA+GL  P++  K  K +
Sbjct: 224 GSEAVGLA-PRAMEKYCKNR 242

[Close]

BLAST of Lsi05G016640.1 vs. Swiss-Prot
Match: IAA14_ARATH (Auxin-responsive protein IAA14 OS=Arabidopsis thaliana GN=IAA14 PE=1 SV=2)

HSP 1 Score: 136.7 bits (343), Expect = 1.3e-31
Identity = 65/79 (82.28%), Postives = 71/79 (89.87%), Query Frame = 1


Query: 1   MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK 60
           MG YGAQGMIDFMNESK+MDLLNSSEYVPSYEDKDGDWMLVGDVPW MFV+SCKRLRIMK
Sbjct: 150 MGSYGAQGMIDFMNESKVMDLLNSSEYVPSYEDKDGDWMLVGDVPWPMFVESCKRLRIMK 209

Query: 61  GSEAIGLGIPKSNGKMQKQ 80
           GSEAIGL  P++  K + +
Sbjct: 210 GSEAIGLA-PRAMEKFKNR 227

[Close]

BLAST of Lsi05G016640.1 vs. Swiss-Prot
Match: IAA16_ARATH (Auxin-responsive protein IAA16 OS=Arabidopsis thaliana GN=IAA16 PE=1 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.6e-29
Identity = 58/67 (86.57%), Postives = 64/67 (95.52%), Query Frame = 1


Query: 1   MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK 60
           +G+YG QGM DFMNESKL+DLLN S+YVP+YEDKDGDWMLVGDVPWEMFVDSCKR+RIMK
Sbjct: 158 IGNYGPQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRIRIMK 217

Query: 61  GSEAIGL 68
           GSEAIGL
Sbjct: 218 GSEAIGL 224

[Close]

BLAST of Lsi05G016640.1 vs. Swiss-Prot
Match: AUX28_SOYBN (Auxin-induced protein AUX28 OS=Glycine max GN=AUX28 PE=2 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 4.1e-28
Identity = 59/79 (74.68%), Postives = 69/79 (87.34%), Query Frame = 1


Query: 2   GDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKG 61
           G+  +QGM DFMNESKL DLLNSS+YVP+YEDKDGDWMLVGDVPWEMFV+SCKRLRIMKG
Sbjct: 164 GNCESQGMKDFMNESKLNDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKG 223

Query: 62  SEAIGLGI-PKSNGKMQKQ 80
            EAIGLG+ P++  K + +
Sbjct: 224 KEAIGLGLAPRAMAKCKNR 242

[Close]

BLAST of Lsi05G016640.1 vs. Swiss-Prot
Match: IAA17_ARATH (Auxin-responsive protein IAA17 OS=Arabidopsis thaliana GN=IAA17 PE=1 SV=2)

HSP 1 Score: 119.8 bits (299), Expect = 1.7e-26
Identity = 55/68 (80.88%), Postives = 62/68 (91.18%), Query Frame = 1


Query: 1   MGDYGAQ-GMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIM 60
           MG +G + GMIDFMNE KLMDL+NS +YVPSYEDKDGDWMLVGDVPW MFVD+CKRLR+M
Sbjct: 150 MGKHGGEEGMIDFMNERKLMDLVNSWDYVPSYEDKDGDWMLVGDVPWPMFVDTCKRLRLM 209

Query: 61  KGSEAIGL 68
           KGS+AIGL
Sbjct: 210 KGSDAIGL 217

[Close]

BLAST of Lsi05G016640.1 vs. TrEMBL
Match: W9QE85_9ROSA (Auxin-responsive protein OS=Morus notabilis GN=L484_016332 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 9.4e-32
Identity = 66/69 (95.65%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1   MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK 60
           MG+YGAQGMIDFMNESKLMDLLNSSEYVP+YEDKDGDWMLVGDVPWEMFVDSCKRLRIMK
Sbjct: 177 MGNYGAQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK 236

Query: 61  GSEAIGLGI 70
           GSEAIGLG+
Sbjct: 237 GSEAIGLGL 245

[Close]

BLAST of Lsi05G016640.1 vs. TrEMBL
Match: M4EYJ4_BRARP (Auxin-responsive protein OS=Brassica rapa subsp. pekinensis PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 3.6e-31
Identity = 69/80 (86.25%), Postives = 73/80 (91.25%), Query Frame = 1


Query: 1   MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK 60
           MG+YGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK
Sbjct: 163 MGNYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK 222

Query: 61  GSEAIGLGIPKSNGKMQKQK 81
           GSEAIGL  P++  K  K +
Sbjct: 223 GSEAIGLA-PRAMEKYCKNR 241

[Close]

BLAST of Lsi05G016640.1 vs. TrEMBL
Match: B9HUN7_POPTR (Auxin-responsive protein OS=Populus trichocarpa GN=POPTR_0010s08880g PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 3.6e-31
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 1


Query: 1   MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK 60
           MG+YGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK
Sbjct: 199 MGNYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK 258

Query: 61  GSEAIGL 68
           GSEAIGL
Sbjct: 259 GSEAIGL 265

[Close]

BLAST of Lsi05G016640.1 vs. TrEMBL
Match: A0A141PG51_9ROSI (Auxin-responsive protein OS=Populus davidiana x Populus alba var. pyramidalis PE=2 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 4.7e-31
Identity = 65/67 (97.01%), Postives = 67/67 (100.00%), Query Frame = 1


Query: 1   MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK 60
           MG+YGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK
Sbjct: 170 MGNYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK 229

Query: 61  GSEAIGL 68
           GSEA+GL
Sbjct: 230 GSEAVGL 236

[Close]

BLAST of Lsi05G016640.1 vs. TrEMBL
Match: A0A0D2Q3W0_GOSRA (Auxin-responsive protein OS=Gossypium raimondii GN=B456_001G242900 PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 6.1e-31
Identity = 65/82 (79.27%), Postives = 76/82 (92.68%), Query Frame = 1


Query: 1   MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK 60
           +G+ G+QG+ DFMNESKLMDLLN S+YVP+YEDKDGDWMLVGDVPWEMFV+SCKRLRIMK
Sbjct: 175 IGNCGSQGIKDFMNESKLMDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMK 234

Query: 61  GSEAIGLGIPKSNGKMQKQKLK 83
           G+EAIGLG  KS G+MQ++KLK
Sbjct: 235 GTEAIGLGYTKSCGEMQEEKLK 256

[Close]

BLAST of Lsi05G016640.1 vs. TAIR10
Match: AT3G23050.1 (AT3G23050.1 indole-3-acetic acid 7)

HSP 1 Score: 138.3 bits (347), Expect = 2.6e-33
Identity = 66/80 (82.50%), Postives = 73/80 (91.25%), Query Frame = 1


Query: 1   MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK 60
           MG+YGAQGMIDFMNESKLM+LLNSSEYVPSYEDKDGDWMLVGDVPWEMFV+SCKRLRIMK
Sbjct: 164 MGNYGAQGMIDFMNESKLMNLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVESCKRLRIMK 223

Query: 61  GSEAIGLGIPKSNGKMQKQK 81
           GSEA+GL  P++  K  K +
Sbjct: 224 GSEAVGLA-PRAMEKYCKNR 242

[Close]

BLAST of Lsi05G016640.1 vs. TAIR10
Match: AT4G14550.1 (AT4G14550.1 indole-3-acetic acid inducible 14)

HSP 1 Score: 136.7 bits (343), Expect = 7.6e-33
Identity = 65/79 (82.28%), Postives = 71/79 (89.87%), Query Frame = 1


Query: 1   MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK 60
           MG YGAQGMIDFMNESK+MDLLNSSEYVPSYEDKDGDWMLVGDVPW MFV+SCKRLRIMK
Sbjct: 150 MGSYGAQGMIDFMNESKVMDLLNSSEYVPSYEDKDGDWMLVGDVPWPMFVESCKRLRIMK 209

Query: 61  GSEAIGLGIPKSNGKMQKQ 80
           GSEAIGL  P++  K + +
Sbjct: 210 GSEAIGLA-PRAMEKFKNR 227

[Close]

BLAST of Lsi05G016640.1 vs. TAIR10
Match: AT3G04730.1 (AT3G04730.1 indoleacetic acid-induced protein 16)

HSP 1 Score: 129.8 bits (325), Expect = 9.3e-31
Identity = 58/67 (86.57%), Postives = 64/67 (95.52%), Query Frame = 1


Query: 1   MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK 60
           +G+YG QGM DFMNESKL+DLLN S+YVP+YEDKDGDWMLVGDVPWEMFVDSCKR+RIMK
Sbjct: 158 IGNYGPQGMKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRIRIMK 217

Query: 61  GSEAIGL 68
           GSEAIGL
Sbjct: 218 GSEAIGL 224

[Close]

BLAST of Lsi05G016640.1 vs. TAIR10
Match: AT1G04250.1 (AT1G04250.1 AUX/IAA transcriptional regulator family protein)

HSP 1 Score: 119.8 bits (299), Expect = 9.6e-28
Identity = 55/68 (80.88%), Postives = 62/68 (91.18%), Query Frame = 1


Query: 1   MGDYGAQ-GMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIM 60
           MG +G + GMIDFMNE KLMDL+NS +YVPSYEDKDGDWMLVGDVPW MFVD+CKRLR+M
Sbjct: 150 MGKHGGEEGMIDFMNERKLMDLVNSWDYVPSYEDKDGDWMLVGDVPWPMFVDTCKRLRLM 209

Query: 61  KGSEAIGL 68
           KGS+AIGL
Sbjct: 210 KGSDAIGL 217

[Close]

BLAST of Lsi05G016640.1 vs. TAIR10
Match: AT5G65670.1 (AT5G65670.1 indole-3-acetic acid inducible 9)

HSP 1 Score: 100.5 bits (249), Expect = 6.0e-22
Identity = 49/82 (59.76%), Postives = 63/82 (76.83%), Query Frame = 1


Query: 2   GDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKG 61
           G  GA G  D ++E+KL DLLN  +YV +YEDKDGDWMLVGDVPWEMF+D CK+L+IMKG
Sbjct: 260 GSNGAAGK-DMLSETKLKDLLNGKDYVLTYEDKDGDWMLVGDVPWEMFIDVCKKLKIMKG 319

Query: 62  SEAIGL-GIPKSNGKMQKQKLK 83
            +AIGL   P++   M+K K++
Sbjct: 320 CDAIGLAAAPRA---MEKSKMR 337

[Close]

BLAST of Lsi05G016640.1 vs. NCBI nr
Match: gi|703066636|ref|XP_010087762.1| (Auxin-responsive protein IAA7 [Morus notabilis])

HSP 1 Score: 144.1 bits (362), Expect = 1.3e-31
Identity = 66/69 (95.65%), Postives = 69/69 (100.00%), Query Frame = 1


Query: 1   MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK 60
           MG+YGAQGMIDFMNESKLMDLLNSSEYVP+YEDKDGDWMLVGDVPWEMFVDSCKRLRIMK
Sbjct: 177 MGNYGAQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK 236

Query: 61  GSEAIGLGI 70
           GSEAIGLG+
Sbjct: 237 GSEAIGLGL 245

[Close]

BLAST of Lsi05G016640.1 vs. NCBI nr
Match: gi|923626635|ref|XP_013749219.1| (PREDICTED: auxin-responsive protein IAA7 [Brassica napus])

HSP 1 Score: 142.1 bits (357), Expect = 5.1e-31
Identity = 69/80 (86.25%), Postives = 73/80 (91.25%), Query Frame = 1


Query: 1   MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK 60
           MG+YGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK
Sbjct: 163 MGNYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK 222

Query: 61  GSEAIGLGIPKSNGKMQKQK 81
           GSEAIGL  P++  K  K +
Sbjct: 223 GSEAIGLA-PRAMEKYCKNR 241

[Close]

BLAST of Lsi05G016640.1 vs. NCBI nr
Match: gi|224111068|ref|XP_002315736.1| (aux/IAA family protein [Populus trichocarpa])

HSP 1 Score: 142.1 bits (357), Expect = 5.1e-31
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 1


Query: 1   MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK 60
           MG+YGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK
Sbjct: 199 MGNYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK 258

Query: 61  GSEAIGL 68
           GSEAIGL
Sbjct: 259 GSEAIGL 265

[Close]

BLAST of Lsi05G016640.1 vs. NCBI nr
Match: gi|743859401|ref|XP_011030585.1| (PREDICTED: auxin-responsive protein IAA14-like isoform X1 [Populus euphratica])

HSP 1 Score: 142.1 bits (357), Expect = 5.1e-31
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 1


Query: 1   MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK 60
           MG+YGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK
Sbjct: 170 MGNYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK 229

Query: 61  GSEAIGL 68
           GSEAIGL
Sbjct: 230 GSEAIGL 236

[Close]

BLAST of Lsi05G016640.1 vs. NCBI nr
Match: gi|697164451|ref|XP_009591035.1| (PREDICTED: auxin-responsive protein IAA7-like [Nicotiana tomentosiformis])

HSP 1 Score: 142.1 bits (357), Expect = 5.1e-31
Identity = 70/85 (82.35%), Postives = 76/85 (89.41%), Query Frame = 1


Query: 1   MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK 60
           MG+YGAQGMIDFMNESKLMDLLNSSEYVP+YEDKDGDWMLVGDVPWEMFVDSCKRLRIMK
Sbjct: 147 MGNYGAQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVDSCKRLRIMK 206

Query: 61  GSEAIGLGIPKSNGKMQKQKLKRRL 86
           GSEAIGL  P++      +K KRR+
Sbjct: 207 GSEAIGLA-PRA-----MEKCKRRI 225

The following BLAST results are available for this feature:

BLAST of Lsi05G016640.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
IAA7_ARATH	4.6e-32	82.50	Auxin-responsive protein IAA7 OS=Arabidopsis thaliana GN=IAA7 PE=1 SV=1	[more]
IAA14_ARATH	1.3e-31	82.28	Auxin-responsive protein IAA14 OS=Arabidopsis thaliana GN=IAA14 PE=1 SV=2	[more]
IAA16_ARATH	1.6e-29	86.57	Auxin-responsive protein IAA16 OS=Arabidopsis thaliana GN=IAA16 PE=1 SV=1	[more]
AUX28_SOYBN	4.1e-28	74.68	Auxin-induced protein AUX28 OS=Glycine max GN=AUX28 PE=2 SV=1	[more]
IAA17_ARATH	1.7e-26	80.88	Auxin-responsive protein IAA17 OS=Arabidopsis thaliana GN=IAA17 PE=1 SV=2	[more]

BLAST of Lsi05G016640.1 vs. TrEMBL


Match Name	E-value	Identity	Description
W9QE85_9ROSA	9.4e-32	95.65	Auxin-responsive protein OS=Morus notabilis GN=L484_016332 PE=3 SV=1	[more]
M4EYJ4_BRARP	3.6e-31	86.25	Auxin-responsive protein OS=Brassica rapa subsp. pekinensis PE=3 SV=1	[more]
B9HUN7_POPTR	3.6e-31	98.51	Auxin-responsive protein OS=Populus trichocarpa GN=POPTR_0010s08880g PE=3 SV=1	[more]
A0A141PG51_9ROSI	4.7e-31	97.01	Auxin-responsive protein OS=Populus davidiana x Populus alba var. pyramidalis PE...	[more]
A0A0D2Q3W0_GOSRA	6.1e-31	79.27	Auxin-responsive protein OS=Gossypium raimondii GN=B456_001G242900 PE=3 SV=1	[more]

BLAST of Lsi05G016640.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G23050.1	2.6e-33	82.50	indole-3-acetic acid 7	[more]
AT4G14550.1	7.6e-33	82.28	indole-3-acetic acid inducible 14	[more]
AT3G04730.1	9.3e-31	86.57	indoleacetic acid-induced protein 16	[more]
AT1G04250.1	9.6e-28	80.88	AUX/IAA transcriptional regulator family protein	[more]
AT5G65670.1	6.0e-22	59.76	indole-3-acetic acid inducible 9	[more]

BLAST of Lsi05G016640.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|703066636\|ref\|XP_010087762.1\|	1.3e-31	95.65	Auxin-responsive protein IAA7 [Morus notabilis]	[more]
gi\|923626635\|ref\|XP_013749219.1\|	5.1e-31	86.25	PREDICTED: auxin-responsive protein IAA7 [Brassica napus]	[more]
gi\|224111068\|ref\|XP_002315736.1\|	5.1e-31	98.51	aux/IAA family protein [Populus trichocarpa]	[more]
gi\|743859401\|ref\|XP_011030585.1\|	5.1e-31	98.51	PREDICTED: auxin-responsive protein IAA14-like isoform X1 [Populus euphratica]	[more]
gi\|697164451\|ref\|XP_009591035.1\|	5.1e-31	82.35	PREDICTED: auxin-responsive protein IAA7-like [Nicotiana tomentosiformis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR003311	AUX_IAA
IPR000270	PB1_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0009734	auxin-activated signaling pathway
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding
molecular_function	GO:0046983	protein dimerization activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi05G016640	Lsi05G016640	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi05G016640.1.CDS.1	Lsi05G016640.1.CDS.1	CDS
Lsi05G016640.1.CDS.2	Lsi05G016640.1.CDS.2	CDS
Lsi05G016640.1.CDS.3	Lsi05G016640.1.CDS.3	CDS
Lsi05G016640.1.CDS.4	Lsi05G016640.1.CDS.4	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi05G016640.1.three_prime_UTR.1	Lsi05G016640.1.three_prime_UTR.1	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi05G016640.1	Lsi05G016640.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000270	PB1 domain	PROFILE	PS51745	PB1	coord: 1..61 score: 13
IPR003311	AUX/IAA protein	PANTHER	PTHR31734	FAMILY NOT NAMED	coord: 1..76 score: 5.6
None	No IPR available	PANTHER	PTHR31734:SF30	AUXIN-RESPONSIVE PROTEIN IAA14-RELATED	coord: 1..76 score: 5.6
None	No IPR available	unknown	SSF54277	CAD & PB1 domains	coord: 23..60 score: 2.16