Lsi05G009750 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G009750
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Signal recognition particle 9 kDa protein
Location	chr05 : 16986775 .. 16990200 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCAATTCATTTTTCCGAAAACTTAAAGTCATCCGTACAAAAATCTTTATTTGTGCTTCTTTCACTTCGCGCTGGTGCTATTCATTGTAAAGAAACCAAGATTTCGCACGCTCGCTAAAATTCCCAAGCTCTCCCTCTTTTTCGCTTCTGCCGCGCAGCCATGGTCTACATAGCTTCGTGGGATGAATTCGTCGAGCGTTCTGTGCAATTGTTCCGTTCCGATCCCAACTCCGTAAGTTTGTACTTCGAAATCGGATTCCCTAGATATTGTTTTCTGTTTGAATTCTGAGAAATTTAACACCACAGATGAGAAATTAGATCGCATTGTTGTATTGTCATTCTCCAATTGCATTTTTAATTCTTGAATTATACGGAGCTGAGCAAATCAGCGCTGCAGACTTGAATGATATGAATTGTGAAAGGCGTTCGAATTCATCAAACTGCCTAATTTGGTTTTTGTGTAAACATTATCCGCGATTGCGAACTTACAGTCTACTCATATGTTCCGTTTATTGCATCGTTCTTTGTTTGTTGTTTCATTCTAACTGCGCTCGCTTTTTTCTTTTTTTCATCCTACTGAAAATTTAGACGAGGTATAACATAAAGTATCGACACTGCGATGGGAAGCTGGTTCTTAAGGTCACCGATAACCGTGAGGTAAGGAATTTTTTGTTGGGATATTGATTAACATCATGTGTTTTTCTGGTTAGTGATCAGGATGGGATTTTTTATTATTGACTTTCAACTGTATGCTTGGTTCTGTGTTTCATGTGGCAAATTCTTAGCCTTATGAATGTTAAACGCCAATGTTTGAAGAAGCGTGTTGAGTCTTTGATGCACGTGTATCTAATATCTATGTAGACTTGTGATATGCTTCTCCACTTTATTATTCTGTAAAGTTTCATGTAGACAACAGTTGAATTTGGTGCGTCTCATTAAAGGATGCCACCATTTTTTATGCAACCACGAACCATCAACTAGCAATTTAGAAATCAGGTCTTAAACCTAACCACTAATTCAAACCAAAATTTTCGCCGACTCTTTTGGTGTCATATATCTTTCACAATCGTTCTACGGAGGATTAGGATGTGGGAGTGATTCTTTCTCACGTGGAAAAGTGAAAACTAACCAGTGCAACATGCATGGGTACAACTGAGAATCTGATTGGTGATATACATATATGATATATTGATGCTTGCTTGTATGGAGAATTTTCTGTATATCTGCACGTATCCTCATGACAAAGCCGGACACGTCAATGATCTTCTATTGAAATGAACAGTCTAGAATTTAACCAGAACTTGCTTAAGGGCATATGTCAAATCATAACAATATCATTATCGGAATAGTGGTGCCTATCTTTCTAGATGTGTTAGGTCTAATAATTTTCGCTTTTTTCTTTTTTTTTTTCCCTCCCTGTTTTCCAGTGTCTTAAGTTCAAGACTGACCAGGCACAGGATGCCAAAAAGATGGAAAAACTCAACAACATATTCTTCACTCTGATGGCCCGGGGCCCTGATGGTATTTTGCTTTGAATTTATGTGGAATAATGAAGCATCTGAATACTCTGTTGAATAATAAGTAACCACTTGCTAGTGACATGATTTTGTTAAAATTTGAATTCTTGTTGTCTATATGAATGAATGGAATGGAAACTGTGTATTCTCTAATTGCATGAAAGTTCCATATCCTTAAATTGCAGCAACTTGTAAATTAGTTCCATGATGATTTCAGCACTTGAAGGTCGAGTTTACTTCCTTTCTGAATGCTGTTTGAAACCATGAATGAATATAGACCTGCTTGCTAACTTTTTTATATTGGCCAAAATGGTTCACAGTGTGCCTGGAGTTCTCACACAATCTATGATCTAAATATGCACCCTTGGCATTCATGGACCATCTTTCTTAATCTATATAAATTTTTATTTGCCCAGCAATTCTTCAACATTTAAATCTAATGTGCACTCAGTTCTACTAATTGGAATTCTCATATATTTTGCCTTTTCTCTTTTGTGAAGTGGATATATCAGAAGTGACGGGCAAAGACCAGGTTGATGCACAGCCAACCAAGAAAGGAAGGGGGCGGAAGCAATGACTTCACATTGACTACTGCACGGATAGGTTTCTCATACTTCTTTAAACCCATTGATGAATTATAATCTTTATTTACTAATTATTTAGTTAATCTTCTCGTCTTGCTTTCTTCAGAATAGATTATTTAAAGTACTGGAGTAAATTTACCATATGCCGTCCCATTTTTCTTAAAAAAATTTGGTGTGCAGTTCGACTGTAATACATGGTTTTTCTTTTATATTGATAAACATTTTCACAAGTTCCACCTCAGTATACTGATTTGCTCCTATGCTCTGTTAACATCTTGTGCCAATACTTTATTTTAGACTTTAGTTGGAAATTAACCGTTATGAGTTGTCCTAATGGTTATTGGCGCACGTAAAAAAAAAGGTTAAAACACTTTGAAAGAATGGTTGAGACTTCATGGTGGTCATTTGTGACACCATCTACTTAGGATATTAAAATTCTACAAGTTTTCTGACAATCAAATGTTTCAAAGTGGGTGGCTGTCTTTTGAGAATAATCAAAGTATAGGTAAGCTAGCATGGATAGCCTCTAAATTAATAATAATATTAGAATACATGAATAATGAATATGGAATGGTCCTATGATATAAATCAACGATAATACAAGATTTCAAGATTTTGTCTGCTTTTCATTTGAGTATTGTCCTGCTGCCATGTAAACAAGGAGAGGATTCTCTTCTCTATTTCAAATATCTAGACTCTTTTAATTGTTCATATCTTTCATTGTCTACTTCAATATAAAACACGATTTTGTTAGTGTATTCATTATTGTTGAATGTTGAGTACAAAGCAATTGTATTTTATTTTGATTATCTAACTTCTATTAGAAAATCAACTGTGACCGAGTATTTTATTTGGTAGATTGTTTTAAGTTGGCGACCTTTGCTTTCTTGTGCCTCTTGATTTCAGATTACGCACATTGAACCACTAGGCAACCACTTGAATGCATCCATATGAAGATGTTTCTTTCACAATGCTTTTAGGCTTTACCAAGATGCTCCCACCATCACTATTTTAGTTCTCTTCAAATCTGCATAGAAGGCACCTTGGTTAGTTGCTTTTGGGATGTATTTCTGGGATCTGTTTCAATTAATCAAAGCTCAAGTCTTTTCTTATGATGGAGCTGAACATGGCTTGTTATAGTAGAAAATGCTTTGAGGTGTCTTTAAAAATTTCAAAGTAACTTTTTGACCTTTAGTCAAGCCTCATTTAAAACAATTTAAAATTATTTTAAAGTAAGTAAAAGCTATTTTAAGATATTTGAAAATTTATTCTTGCTCTGTTCTAAAGTTGATCAAATTGATTGGAAAAAAATACTGAATAATTAT

mRNA sequence

GTCAATTCATTTTTCCGAAAACTTAAAGTCATCCGTACAAAAATCTTTATTTGTGCTTCTTTCACTTCGCGCTGGTGCTATTCATTGTAAAGAAACCAAGATTTCGCACGCTCGCTAAAATTCCCAAGCTCTCCCTCTTTTTCGCTTCTGCCGCGCAGCCATGGTCTACATAGCTTCGTGGGATGAATTCGTCGAGCGTTCTGTGCAATTGTTCCGTTCCGATCCCAACTCCACGAGGTATAACATAAAGTATCGACACTGCGATGGGAAGCTGGTTCTTAAGGTCACCGATAACCGTGAGTGTCTTAAGTTCAAGACTGACCAGGCACAGGATGCCAAAAAGATGGAAAAACTCAACAACATATTCTTCACTCTGATGGCCCGGGGCCCTGATGTGGATATATCAGAAGTGACGGGCAAAGACCAGGTTGATGCACAGCCAACCAAGAAAGGAAGGGGGCGGAAGCAATGACTTCACATTGACTACTGCACGGATAGATTACGCACATTGAACCACTAGGCAACCACTTGAATGCATCCATATGAAGATGTTTCTTTCACAATGCTTTTAGGCTTTACCAAGATGCTCCCACCATCACTATTTTAGTTCTCTTCAAATCTGCATAGAAGGCACCTTGGTTAGTTGCTTTTGGGATGTATTTCTGGGATCTGTTTCAATTAATCAAAGCTCAAGTCTTTTCTTATGATGGAGCTGAACATGGCTTGTTATAGTAGAAAATGCTTTGAGGTGTCTTTAAAAATTTCAAAGTAACTTTTTGACCTTTAGTCAAGCCTCATTTAAAACAATTTAAAATTATTTTAAAGTAAGTAAAAGCTATTTTAAGATATTTGAAAATTTATTCTTGCTCTGTTCTAAAGTTGATCAAATTGATTGGAAAAAAATACTGAATAATTAT

Coding sequence (CDS)

ATGGTCTACATAGCTTCGTGGGATGAATTCGTCGAGCGTTCTGTGCAATTGTTCCGTTCCGATCCCAACTCCACGAGGTATAACATAAAGTATCGACACTGCGATGGGAAGCTGGTTCTTAAGGTCACCGATAACCGTGAGTGTCTTAAGTTCAAGACTGACCAGGCACAGGATGCCAAAAAGATGGAAAAACTCAACAACATATTCTTCACTCTGATGGCCCGGGGCCCTGATGTGGATATATCAGAAGTGACGGGCAAAGACCAGGTTGATGCACAGCCAACCAAGAAAGGAAGGGGGCGGAAGCAATGA

Protein sequence

MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ

Homology

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BLAST of Lsi05G009750 vs. Swiss-Prot
Match: SRP09_ARATH (Signal recognition particle 9 kDa protein OS=Arabidopsis thaliana GN=SRP9 PE=3 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 3.7e-48
Identity = 90/103 (87.38%), Postives = 99/103 (96.12%), Query Frame = 1


Query: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
           MVYIASWDEFV+RSVQLFR+DP STRY +KYRHCDGKLVLKVTDN+ECLKFKTDQAQ+AK
Sbjct: 1   MVYIASWDEFVDRSVQLFRADPESTRYVMKYRHCDGKLVLKVTDNKECLKFKTDQAQEAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 104
           KMEKLNNIFFTLMARGPDVD+SEVTGK+Q++ QP KKGRGRKQ
Sbjct: 61  KMEKLNNIFFTLMARGPDVDLSEVTGKEQMETQPAKKGRGRKQ 103

[Close]

BLAST of Lsi05G009750 vs. Swiss-Prot
Match: SRP09_MAIZE (Signal recognition particle 9 kDa protein OS=Zea mays GN=SRP9 PE=3 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 1.9e-44
Identity = 84/103 (81.55%), Postives = 94/103 (91.26%), Query Frame = 1


Query: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
           MVY+ SW+EFVERSVQLFR DPN+TRY +KYRHC+GKLVLKVTD+RECLKFKTDQAQDAK
Sbjct: 1   MVYVDSWEEFVERSVQLFRGDPNATRYVMKYRHCEGKLVLKVTDDRECLKFKTDQAQDAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 104
           KMEKLNNIFF LM RGPDVDISEV+GK+Q + Q  KKGRGR+Q
Sbjct: 61  KMEKLNNIFFALMTRGPDVDISEVSGKEQAEQQQAKKGRGRRQ 103

[Close]

BLAST of Lsi05G009750 vs. Swiss-Prot
Match: SRP09_DICDI (Signal recognition particle 9 kDa protein OS=Dictyostelium discoideum GN=srp9 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 3.7e-16
Identity = 35/71 (49.30%), Postives = 56/71 (78.87%), Query Frame = 1


Query: 2  VYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKK 61
          +YI  WDEF ++S QL+R+DP  TR++ K+RH +GK+VLKVT++   LKF+TD+  D K+
Sbjct: 1  MYIEDWDEFYDKSEQLYRTDPKRTRFSFKFRHVEGKVVLKVTNDTVNLKFQTDKENDFKR 60

Query: 62 MEKLNNIFFTL 73
          ++++N++FF L
Sbjct: 61 IDQINSLFFRL 71

[Close]

BLAST of Lsi05G009750 vs. Swiss-Prot
Match: SRP09_CANLF (Signal recognition particle 9 kDa protein OS=Canis lupus familiaris GN=SRP9 PE=1 SV=2)

HSP 1 Score: 73.6 bits (179), Expect = 1.5e-12
Identity = 33/73 (45.21%), Postives = 47/73 (64.38%), Query Frame = 1


Query: 1  MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
          M    +W+EF   + +L+ +DP   R  +KYRH DG L +KVTD+  CL ++TDQAQD K
Sbjct: 1  MAQYQTWEEFSRAAEKLYLADPMKARVVLKYRHSDGSLCIKVTDDLVCLVYRTDQAQDVK 60

Query: 61 KMEKLNNIFFTLM 74
          K+EK ++    LM
Sbjct: 61 KIEKFHSQLMRLM 73

[Close]

BLAST of Lsi05G009750 vs. Swiss-Prot
Match: SRP09_HUMAN (Signal recognition particle 9 kDa protein OS=Homo sapiens GN=SRP9 PE=1 SV=2)

HSP 1 Score: 73.6 bits (179), Expect = 1.5e-12
Identity = 33/68 (48.53%), Postives = 46/68 (67.65%), Query Frame = 1


Query: 6  SWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKL 65
          +W+EF   + +L+ +DP   R  +KYRH DG L +KVTD+  CL +KTDQAQD KK+EK 
Sbjct: 6  TWEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVKKIEKF 65

Query: 66 NNIFFTLM 74
          ++    LM
Sbjct: 66 HSQLMRLM 73

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BLAST of Lsi05G009750 vs. TrEMBL
Match: A0A0A0LIQ2_CUCSA (Signal recognition particle 9 kDa protein OS=Cucumis sativus GN=Csa_2G224280 PE=3 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 1.5e-51
Identity = 102/103 (99.03%), Postives = 102/103 (99.03%), Query Frame = 1


Query: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
           MVYIASWDEFVERSVQLFRSDP STRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK
Sbjct: 1   MVYIASWDEFVERSVQLFRSDPTSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 104
           KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ
Sbjct: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 103

[Close]

BLAST of Lsi05G009750 vs. TrEMBL
Match: A0A087GWE8_ARAAL (Signal recognition particle 9 kDa protein OS=Arabis alpina GN=AALP_AA5G114200 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 2.4e-46
Identity = 90/103 (87.38%), Postives = 99/103 (96.12%), Query Frame = 1


Query: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
           MVYIASWDEFV+RSVQLFR+DP STRY +KYRHCDGKLVLKVTDN+ECLKFKTDQAQ+AK
Sbjct: 1   MVYIASWDEFVDRSVQLFRADPESTRYVMKYRHCDGKLVLKVTDNKECLKFKTDQAQEAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 104
           KMEKLNNIFFTLMARGPDVD+SEVTGK+Q++ QP KKGRGRKQ
Sbjct: 61  KMEKLNNIFFTLMARGPDVDLSEVTGKEQIETQPAKKGRGRKQ 103

[Close]

BLAST of Lsi05G009750 vs. TrEMBL
Match: A0A0J8BFX1_BETVU (Signal recognition particle 9 kDa protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g017180 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.1e-46
Identity = 90/103 (87.38%), Postives = 100/103 (97.09%), Query Frame = 1


Query: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
           MVYI SWDEFVERSVQLFR+DP+STRY +KYRHCDGKLVLKVTDN+ECLKFKTDQAQDAK
Sbjct: 1   MVYITSWDEFVERSVQLFRADPDSTRYLMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 104
           KMEKLNNIFF LMARGP+VDI+EVTGK+Q++AQP+KKGRGRKQ
Sbjct: 61  KMEKLNNIFFALMARGPEVDIAEVTGKEQIEAQPSKKGRGRKQ 103

[Close]

BLAST of Lsi05G009750 vs. TrEMBL
Match: R0HM88_9BRAS (Signal recognition particle 9 kDa protein OS=Capsella rubella GN=CARUB_v10018295mg PE=3 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 4.1e-46
Identity = 90/103 (87.38%), Postives = 99/103 (96.12%), Query Frame = 1


Query: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
           MVYIASWDEFV+RSVQLFR+DP STRY +KYRHCDGKLVLKVTDN+ECLKFKTDQAQ+AK
Sbjct: 1   MVYIASWDEFVDRSVQLFRADPESTRYVMKYRHCDGKLVLKVTDNKECLKFKTDQAQEAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 104
           KMEKLNNIFFTLMARGPDVD+SEVTGK+Q++ QP KKGRGRKQ
Sbjct: 61  KMEKLNNIFFTLMARGPDVDLSEVTGKEQMETQPVKKGRGRKQ 103

[Close]

BLAST of Lsi05G009750 vs. TrEMBL
Match: Q0WS60_ARATH (Signal recognition particle 9 kDa protein OS=Arabidopsis thaliana GN=At3g49100 PE=2 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 4.1e-46
Identity = 90/103 (87.38%), Postives = 99/103 (96.12%), Query Frame = 1


Query: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
           MVYIASWDEFV+RSVQLFR+DP STRY +KYRHCDGKLVLKVTDN+ECLKFKTDQAQ+AK
Sbjct: 1   MVYIASWDEFVDRSVQLFRADPESTRYVMKYRHCDGKLVLKVTDNKECLKFKTDQAQEAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 104
           KMEKLNNIFFTLMARGPDVD+SEVTGK+Q++ QP KKGRGRKQ
Sbjct: 61  KMEKLNNIFFTLMARGPDVDLSEVTGKEQMETQPAKKGRGRKQ 103

[Close]

BLAST of Lsi05G009750 vs. TAIR10
Match: AT3G49100.1 (AT3G49100.1 Signal recognition particle, SRP9/SRP14 subunit)

HSP 1 Score: 191.8 bits (486), Expect = 2.1e-49
Identity = 90/103 (87.38%), Postives = 99/103 (96.12%), Query Frame = 1


Query: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
           MVYIASWDEFV+RSVQLFR+DP STRY +KYRHCDGKLVLKVTDN+ECLKFKTDQAQ+AK
Sbjct: 1   MVYIASWDEFVDRSVQLFRADPESTRYVMKYRHCDGKLVLKVTDNKECLKFKTDQAQEAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 104
           KMEKLNNIFFTLMARGPDVD+SEVTGK+Q++ QP KKGRGRKQ
Sbjct: 61  KMEKLNNIFFTLMARGPDVDLSEVTGKEQMETQPAKKGRGRKQ 103

[Close]

BLAST of Lsi05G009750 vs. NCBI nr
Match: gi|449474209|ref|XP_004154105.1| (PREDICTED: signal recognition particle 9 kDa protein [Cucumis sativus])

HSP 1 Score: 209.9 bits (533), Expect = 2.1e-51
Identity = 102/103 (99.03%), Postives = 102/103 (99.03%), Query Frame = 1


Query: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
           MVYIASWDEFVERSVQLFRSDP STRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK
Sbjct: 1   MVYIASWDEFVERSVQLFRSDPTSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 104
           KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ
Sbjct: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 103

[Close]

BLAST of Lsi05G009750 vs. NCBI nr
Match: gi|470107141|ref|XP_004289908.1| (PREDICTED: signal recognition particle 9 kDa protein [Fragaria vesca subsp. vesca])

HSP 1 Score: 194.9 bits (494), Expect = 6.9e-47
Identity = 92/103 (89.32%), Postives = 100/103 (97.09%), Query Frame = 1


Query: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
           MVY+ SWDEFV+RSVQLFR+DP+STRY +KYRHCDGKLVLKVTDN+ECLKFKTDQAQDAK
Sbjct: 1   MVYVTSWDEFVDRSVQLFRADPDSTRYVMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 104
           KMEKLNNIFFTLMARGP+VD SEVTGKDQ+DAQPTKKGRGRKQ
Sbjct: 61  KMEKLNNIFFTLMARGPEVDPSEVTGKDQMDAQPTKKGRGRKQ 103

[Close]

BLAST of Lsi05G009750 vs. NCBI nr
Match: gi|729382030|ref|XP_010550542.1| (PREDICTED: signal recognition particle 9 kDa protein [Tarenaya hassleriana])

HSP 1 Score: 193.7 bits (491), Expect = 1.5e-46
Identity = 90/103 (87.38%), Postives = 98/103 (95.15%), Query Frame = 1


Query: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
           MVYI SWDEFV+RSVQLFR+DP STRY +KYRHCDGKLVLKVTDN+ECLKFKTDQAQDAK
Sbjct: 1   MVYIVSWDEFVDRSVQLFRADPESTRYTMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 104
           KMEKLNNIFFTLMARGPDVD+SEVTGK+Q++ QP KKGRGRKQ
Sbjct: 61  KMEKLNNIFFTLMARGPDVDLSEVTGKEQIETQPVKKGRGRKQ 103

[Close]

BLAST of Lsi05G009750 vs. NCBI nr
Match: gi|1021488402|ref|XP_016187179.1| (PREDICTED: signal recognition particle 9 kDa protein [Arachis ipaensis])

HSP 1 Score: 193.7 bits (491), Expect = 1.5e-46
Identity = 91/103 (88.35%), Postives = 100/103 (97.09%), Query Frame = 1


Query: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
           MVYI SWDEFVERSVQLFR+DP+STRY +KYRHCDGKLVLKVTDNRECLK+KTDQAQ+AK
Sbjct: 1   MVYITSWDEFVERSVQLFRADPDSTRYVMKYRHCDGKLVLKVTDNRECLKYKTDQAQEAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 104
           KMEKLNNIFFTLMARGP+VD+SEVTGK+Q DAQPTK+GRGRKQ
Sbjct: 61  KMEKLNNIFFTLMARGPEVDLSEVTGKEQTDAQPTKRGRGRKQ 103

[Close]

BLAST of Lsi05G009750 vs. NCBI nr
Match: gi|694328133|ref|XP_009354890.1| (PREDICTED: signal recognition particle 9 kDa protein [Pyrus x bretschneideri])

HSP 1 Score: 193.4 bits (490), Expect = 2.0e-46
Identity = 92/103 (89.32%), Postives = 98/103 (95.15%), Query Frame = 1


Query: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
           MVYI SWDEFVERSVQLFR+DP STRY +KYRHC+GKLVLKVTDN+ECLKFKTDQAQDAK
Sbjct: 1   MVYITSWDEFVERSVQLFRADPESTRYVMKYRHCEGKLVLKVTDNKECLKFKTDQAQDAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 104
           KMEKLNNIFFTLM+RGPD D SEVTGKDQ+DAQPTKKGRGRKQ
Sbjct: 61  KMEKLNNIFFTLMSRGPDADPSEVTGKDQMDAQPTKKGRGRKQ 103

The following BLAST results are available for this feature:

BLAST of Lsi05G009750 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SRP09_ARATH	3.7e-48	87.38	Signal recognition particle 9 kDa protein OS=Arabidopsis thaliana GN=SRP9 PE=3 S...	[more]
SRP09_MAIZE	1.9e-44	81.55	Signal recognition particle 9 kDa protein OS=Zea mays GN=SRP9 PE=3 SV=1	[more]
SRP09_DICDI	3.7e-16	49.30	Signal recognition particle 9 kDa protein OS=Dictyostelium discoideum GN=srp9 PE...	[more]
SRP09_CANLF	1.5e-12	45.21	Signal recognition particle 9 kDa protein OS=Canis lupus familiaris GN=SRP9 PE=1...	[more]
SRP09_HUMAN	1.5e-12	48.53	Signal recognition particle 9 kDa protein OS=Homo sapiens GN=SRP9 PE=1 SV=2	[more]

BLAST of Lsi05G009750 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIQ2_CUCSA	1.5e-51	99.03	Signal recognition particle 9 kDa protein OS=Cucumis sativus GN=Csa_2G224280 PE=...	[more]
A0A087GWE8_ARAAL	2.4e-46	87.38	Signal recognition particle 9 kDa protein OS=Arabis alpina GN=AALP_AA5G114200 PE...	[more]
A0A0J8BFX1_BETVU	3.1e-46	87.38	Signal recognition particle 9 kDa protein OS=Beta vulgaris subsp. vulgaris GN=BV...	[more]
R0HM88_9BRAS	4.1e-46	87.38	Signal recognition particle 9 kDa protein OS=Capsella rubella GN=CARUB_v10018295...	[more]
Q0WS60_ARATH	4.1e-46	87.38	Signal recognition particle 9 kDa protein OS=Arabidopsis thaliana GN=At3g49100 P...	[more]

BLAST of Lsi05G009750 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G49100.1	2.1e-49	87.38	Signal recognition particle, SRP9/SRP14 subunit	[more]

BLAST of Lsi05G009750 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449474209\|ref\|XP_004154105.1\|	2.1e-51	99.03	PREDICTED: signal recognition particle 9 kDa protein [Cucumis sativus]	[more]
gi\|470107141\|ref\|XP_004289908.1\|	6.9e-47	89.32	PREDICTED: signal recognition particle 9 kDa protein [Fragaria vesca subsp. vesc...	[more]
gi\|729382030\|ref\|XP_010550542.1\|	1.5e-46	87.38	PREDICTED: signal recognition particle 9 kDa protein [Tarenaya hassleriana]	[more]
gi\|1021488402\|ref\|XP_016187179.1\|	1.5e-46	88.35	PREDICTED: signal recognition particle 9 kDa protein [Arachis ipaensis]	[more]
gi\|694328133\|ref\|XP_009354890.1\|	2.0e-46	89.32	PREDICTED: signal recognition particle 9 kDa protein [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0048500	signal recognition particle

Vocabulary: **Biological Process**
Term	Definition
GO:0045900	negative regulation of translational elongation
GO:0006614	SRP-dependent cotranslational protein targeting to membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0008312	7S RNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR009018	Signal_recog_particle_SRP9/14
IPR008832	Signal_recog_particle_SRP9

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045900	negative regulation of translational elongation
biological_process	GO:0006614	SRP-dependent cotranslational protein targeting to membrane
biological_process	GO:0006616	SRP-dependent cotranslational protein targeting to membrane, translocation
cellular_component	GO:0005786	signal recognition particle, endoplasmic reticulum targeting
cellular_component	GO:0048500	signal recognition particle
cellular_component	GO:0005785	signal recognition particle receptor complex
molecular_function	GO:0008312	7S RNA binding
molecular_function	GO:0005047	signal recognition particle binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G009750.1	Lsi05G009750.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008832	Signal recognition particle, SRP9 subunit	PIR	PIRSF017029	SRP9	coord: 1..97 score: 5.2
IPR009018	Signal recognition particle, SRP9/SRP14 subunit	GENE3D	G3DSA:3.30.720.10		coord: 2..83 score: 7.7
IPR009018	Signal recognition particle, SRP9/SRP14 subunit	unknown	SSF54762	Signal recognition particle alu RNA binding heterodimer, SRP9/14	coord: 5..79 score: 7.59
None	No IPR available	PANTHER	PTHR12834	SIGNAL RECOGNITION PARTICLE 9 KDA PROTEIN	coord: 2..103 score: 1.7
None	No IPR available	PANTHER	PTHR12834:SF12	SIGNAL RECOGNITION PARTICLE 9 KDA PROTEIN	coord: 2..103 score: 1.7
None	No IPR available	PFAM	PF05486	SRP9-21	coord: 5..66 score: 9.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G009750	Csa2G224280	Cucumber (Chinese Long) v2	culsiB128
Lsi05G009750	CSPI02G11200	Wild cucumber (PI 183967)	cpilsiB126
Lsi05G009750	CmaCh19G000610	Cucurbita maxima (Rimu)	cmalsiB486
Lsi05G009750	CmaCh02G017720	Cucurbita maxima (Rimu)	cmalsiB585
Lsi05G009750	CmoCh19G000590	Cucurbita moschata (Rifu)	cmolsiB470
Lsi05G009750	CmoCh02G018150	Cucurbita moschata (Rifu)	cmolsiB565
Lsi05G009750	Cla006016	Watermelon (97103) v1	lsiwmB356
Lsi05G009750	MELO3C014306	Melon (DHL92) v3.5.1	lsimeB361
Lsi05G009750	ClCG07G000650	Watermelon (Charleston Gray)	lsiwcgB348
Lsi05G009750	MELO3C014306.2	Melon (DHL92) v3.6.1	lsimedB376
Lsi05G009750	Cla97C07G128950	Watermelon (97103) v2	lsiwmbB346
Lsi05G009750	Bhi05G000196	Wax gourd	lsiwgoB459
Lsi05G009750	Cp4.1LG05g01410	Cucurbita pepo (Zucchini)	cpelsiB616
Lsi05G009750	CsGy2G011230	Cucumber (Gy14) v2	cgyblsiB116
Lsi05G009750	Carg16858	Silver-seed gourd	carlsiB689
Lsi05G009750	Carg08986	Silver-seed gourd	carlsiB717
Lsi05G009750	CsaV3_2G013670	Cucumber (Chinese Long) v3	cuclsiB141

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G009750	Bottle gourd (USVL1VR-Ls)	lsilsiB012
Lsi05G009750	Bottle gourd (USVL1VR-Ls)	lsilsiB108
Lsi05G009750	Bottle gourd (USVL1VR-Ls)	lsilsiB157
Lsi05G009750	Cucumber (Gy14) v1	cgylsiB418
Lsi05G009750	Cucurbita maxima (Rimu)	cmalsiB247
Lsi05G009750	Cucurbita maxima (Rimu)	cmalsiB354
Lsi05G009750	Cucurbita maxima (Rimu)	cmalsiB840
Lsi05G009750	Cucurbita moschata (Rifu)	cmolsiB235
Lsi05G009750	Cucurbita pepo (Zucchini)	cpelsiB209
Lsi05G009750	Cucurbita pepo (Zucchini)	cpelsiB269
Lsi05G009750	Cucurbita pepo (Zucchini)	cpelsiB716
Lsi05G009750	Wild cucumber (PI 183967)	cpilsiB127
Lsi05G009750	Wild cucumber (PI 183967)	cpilsiB213
Lsi05G009750	Cucumber (Chinese Long) v2	culsiB129
Lsi05G009750	Cucumber (Chinese Long) v2	culsiB215
Lsi05G009750	Melon (DHL92) v3.5.1	lsimeB364
Lsi05G009750	Melon (DHL92) v3.5.1	lsimeB382
Lsi05G009750	Watermelon (Charleston Gray)	lsiwcgB312
Lsi05G009750	Watermelon (Charleston Gray)	lsiwcgB338
Lsi05G009750	Watermelon (Charleston Gray)	lsiwcgB344
Lsi05G009750	Watermelon (97103) v1	lsiwmB345
Lsi05G009750	Watermelon (97103) v1	lsiwmB367
Lsi05G009750	Watermelon (97103) v1	lsiwmB383
Lsi05G009750	Cucumber (Gy14) v2	cgyblsiB117
Lsi05G009750	Cucumber (Gy14) v2	cgyblsiB206
Lsi05G009750	Melon (DHL92) v3.6.1	lsimedB379
Lsi05G009750	Melon (DHL92) v3.6.1	lsimedB398
Lsi05G009750	Silver-seed gourd	carlsiB100
Lsi05G009750	Silver-seed gourd	carlsiB211
Lsi05G009750	Cucumber (Chinese Long) v3	cuclsiB140
Lsi05G009750	Cucumber (Chinese Long) v3	cuclsiB234
Lsi05G009750	Watermelon (97103) v2	lsiwmbB336
Lsi05G009750	Watermelon (97103) v2	lsiwmbB342
Lsi05G009750	Watermelon (97103) v2	lsiwmbB351