Carg16858 (gene) Silver-seed gourd

Overview
NameCarg16858
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionSignal recognition particle 9 kDa protein
LocationCucurbita_argyrosperma_scaffold_105 : 331654 .. 333709 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCAAATTTCCCGGGGGCTACCTCTCCTTCGCTTCTGCCGCCGAGCCATGGTCTACATAGCTTCCTGGGATGAATTCGTCGAGCGTTCTGTGCAATTGTTCCGCTCCGATCCTAATTCCGTAAGTTTTTACTTCGAAATCCGATTCTGTAGATGTTGCTGCTGAGAAATCAACATCACAGATGAGAAATTAGATCGCATGATTGTATTGTGATTCTACAATTGCTTTTTTAACTCTTGAATTACATGAAATCGAGCTAGTCATCGCTGCAGACTTGAATGATTTGAATTGAGCGTAATGAATTGTGAAGAGATTTCTAATTCATCTATTGCGAACTTACCGTCTACTCATATGTTCCGTTTATTGCATCGTTTCTCGTTTTTTCGATTCCTTCTAACTGCGACCACTGTTCTCTTTTTCAATCCTACTGGAAATTTAGACGCGGTACAACGTAAAGTATCGACACTGCGATGGGAAACTGGTTCTTAAGGTCACCGATAACCGTGAGGTAAGGAATTGTTTGTTGAGATATTGATGAACATCATGTGTTTTTCTGGTTAGTGATCGGGGTGGGAATTTCGATTATTAAACGGCAATGTTTGGAGAAGCGTGTTGAGTCTCTGATACACTTGTATCCAAGCAGACTTCTGATCAAGTTTTCGTTCAGTCTATGGCTCTCCACTTTATTCTTCTGTAAAGTGTCAAGTAGACAAGAGTTGAATCCAATACCGCAAACCAACAACTAGCAATTTAGAAATCAGGTCTTAAACCTAACCATTAATCCAAACCAAATCATTCATCGATTCATTTTGTTTCTTATTGTCAGATGCCGCATCGGTTGGAGAGAGGAATGAAACATTCTTTATAAGAGTGTGAAAACTTCTCCCTAGTAGACGCGCTTTAAAAACCTTGAGGGGATGCCCGAAAGGGAAAACCCAAAGAGGATAATATCTACTAGCAGTGGGCTTGGATTTGTACTGTTATGCTTATATTGGCTGAAGTTATCTTTCATAATCATTCTACGGAAGATTAGAATGTGGGAGTGTTTGTTACCATGCTAGAAATGGTTTTCTTTTCCTTCTCACGTGGAAAAAATGAAAGCTAATTATGCAAGATGCATGGGTGCAAGTTATCAACTAAGAATCTCATTGGTGAAGTTCATACTTTGATGCTTGCTTGTATGGGGAATTTTCTGTATATATGCCTGTACCCTTGTGACAAACTGGACAAGTCAAATGATCTTCTATTGAAATGAACACTCTGGAAGTAACCAATTGGCATAACGGCACATGTCGAATCATGAAAATTTCAATATCGAGATGTTTTAGGTCTACTAATTTCCTCTTTTTTTTCCTTTTGTCTTCTCCCTGTTTTCCAGTGTCTTAAGTTCAAGACTGACCAGGCACAGGATGCCAAGAAGATGGAAAAACTCAACAACATATTCTTCACTCTGATGGCCCGGGGCCCCGATGGTATTTTGCCTTTTAATTTATGTTGATTAATGAAGCATCAGAATACCCTGTTGAATAATAAATAACCGCTTGCTAGTGACATGATTTAGGACTAAAATTTTGTTAAGATTTGAATTCTTGTTGTCTATATAGTTTGAATGGAAACTATATATTCTTTAGTTGCATGAAAGTTTCAAATCCTCAAATTGCGGAAACTTGTAAATTAGCTCCATTGATGATTTCAGTACTTGAGGATGAGTTCACTACTCCTCTGAATGCCGTTTGAGCCCATGATTGAGTGTAGACCTGCTTGCTAACTAATTTATATTGGCCAAAATGGTTCACGGCGAGACTGGAGTTTTCACACAATCTATGATCTATATGCAATCTTCGCATTGATAGACCATCTTTCTTAGTCTATATAATTTTCTTTTTATTTATCCATCAATGCTTCAACCTGTAAGTCTAATGTGCACTCAATTCTACTTTTTGGAATTCTCATATATTTTTTACTTTTCTCTTTTTTTCAGTGGATATATCAGAAGTGACGGGCAAGGACCAGGTTGATGCACAGCCAACCAAGAAAGGAAGGGGGAGGAAGCAATGA

mRNA sequence

CCAAATTTCCCGGGGGCTACCTCTCCTTCGCTTCTGCCGCCGAGCCATGGTCTACATAGCTTCCTGGGATGAATTCGTCGAGCGTTCTGTGCAATTGTTCCGCTCCGATCCTAATTCCACGCGGTACAACGTAAAGTATCGACACTGCGATGGGAAACTGGTTCTTAAGGTCACCGATAACCGTGAGTGTCTTAAGTTCAAGACTGACCAGGCACAGGATGCCAAGAAGATGGAAAAACTCAACAACATATTCTTCACTCTGATGGCCCGGGGCCCCGATGTGGATATATCAGAAGTGACGGGCAAGGACCAGGTTGATGCACAGCCAACCAAGAAAGGAAGGGGGAGGAAGCAATGA

Coding sequence (CDS)

ATGGTCTACATAGCTTCCTGGGATGAATTCGTCGAGCGTTCTGTGCAATTGTTCCGCTCCGATCCTAATTCCACGCGGTACAACGTAAAGTATCGACACTGCGATGGGAAACTGGTTCTTAAGGTCACCGATAACCGTGAGTGTCTTAAGTTCAAGACTGACCAGGCACAGGATGCCAAGAAGATGGAAAAACTCAACAACATATTCTTCACTCTGATGGCCCGGGGCCCCGATGTGGATATATCAGAAGTGACGGGCAAGGACCAGGTTGATGCACAGCCAACCAAGAAAGGAAGGGGGAGGAAGCAATGA

Protein sequence

MVYIASWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ
Homology
[Close]
BLAST of Carg16858 vs. NCBI nr
Match: XP_022963515.1 (signal recognition particle 9 kDa protein [Cucurbita moschata] >XP_022963516.1 signal recognition particle 9 kDa protein [Cucurbita moschata])

HSP 1 Score: 212.2 bits (539), Expect = 8.2e-52
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
           MVYIASWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK
Sbjct: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 104
           KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ
Sbjct: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 103

[Close]
BLAST of Carg16858 vs. NCBI nr
Match: XP_022967500.1 (signal recognition particle 9 kDa protein-like [Cucurbita maxima] >XP_022967501.1 signal recognition particle 9 kDa protein-like [Cucurbita maxima] >XP_022967502.1 signal recognition particle 9 kDa protein-like [Cucurbita maxima] >XP_022967503.1 signal recognition particle 9 kDa protein-like [Cucurbita maxima])

HSP 1 Score: 210.3 bits (534), Expect = 3.1e-51
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
           MVYIASWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK
Sbjct: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 104
           KMEKL+NIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ
Sbjct: 61  KMEKLDNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 103

[Close]
BLAST of Carg16858 vs. NCBI nr
Match: XP_004154105.1 (PREDICTED: signal recognition particle 9 kDa protein [Cucumis sativus] >XP_004154106.1 PREDICTED: signal recognition particle 9 kDa protein [Cucumis sativus] >XP_008449345.1 PREDICTED: signal recognition particle 9 kDa protein [Cucumis melo] >XP_008449346.1 PREDICTED: signal recognition particle 9 kDa protein [Cucumis melo] >KGN61688.1 hypothetical protein Csa_2G224280 [Cucumis sativus])

HSP 1 Score: 209.5 bits (532), Expect = 5.3e-51
Identity = 101/103 (98.06%), Postives = 102/103 (99.03%), Query Frame = 0 

Query: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
           MVYIASWDEFVERSVQLFRSDP STRYN+KYRHCDGKLVLKVTDNRECLKFKTDQAQDAK
Sbjct: 1   MVYIASWDEFVERSVQLFRSDPTSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 104
           KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ
Sbjct: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 103

[Close]
BLAST of Carg16858 vs. NCBI nr
Match: XP_022146059.1 (signal recognition particle 9 kDa protein isoform X1 [Momordica charantia] >XP_022146061.1 signal recognition particle 9 kDa protein isoform X1 [Momordica charantia])

HSP 1 Score: 208.8 bits (530), Expect = 9.0e-51
Identity = 100/103 (97.09%), Postives = 102/103 (99.03%), Query Frame = 0 

Query: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
           MVYI SWDEFVERSVQLFRSDPNSTRYN+KYRHCDGKLVLKVTDNRECLKFKTDQAQDAK
Sbjct: 1   MVYITSWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 104
           KMEKLNNIFFTLMARGPDVDISEVTGK+QVDAQPTKKGRGRKQ
Sbjct: 61  KMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRGRKQ 103

[Close]
BLAST of Carg16858 vs. NCBI nr
Match: XP_022930934.1 (signal recognition particle 9 kDa protein-like [Cucurbita moschata] >XP_022930935.1 signal recognition particle 9 kDa protein-like [Cucurbita moschata] >XP_022995181.1 signal recognition particle 9 kDa protein [Cucurbita maxima] >XP_022995182.1 signal recognition particle 9 kDa protein [Cucurbita maxima] >XP_023533640.1 signal recognition particle 9 kDa protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 206.8 bits (525), Expect = 3.4e-50
Identity = 99/103 (96.12%), Postives = 101/103 (98.06%), Query Frame = 0 

Query: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
           MVYIASWDEFVERSVQLFRSDPNSTRYN+KYRHCDGKLVLKVTDNRECLKFKTDQAQDAK
Sbjct: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 104
           KMEKLNNIFF LMARGPDVDISEVTGK+Q DAQPTKKGRGRKQ
Sbjct: 61  KMEKLNNIFFALMARGPDVDISEVTGKEQADAQPTKKGRGRKQ 103

[Close]
BLAST of Carg16858 vs. TAIR10
Match: AT3G49100.1 (Signal recognition particle, SRP9/SRP14 subunit)

HSP 1 Score: 191.8 bits (486), Expect = 2.1e-49
Identity = 90/103 (87.38%), Postives = 99/103 (96.12%), Query Frame = 0 

Query: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
           MVYIASWDEFV+RSVQLFR+DP STRY +KYRHCDGKLVLKVTDN+ECLKFKTDQAQ+AK
Sbjct: 1   MVYIASWDEFVDRSVQLFRADPESTRYVMKYRHCDGKLVLKVTDNKECLKFKTDQAQEAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 104
           KMEKLNNIFFTLMARGPDVD+SEVTGK+Q++ QP KKGRGRKQ
Sbjct: 61  KMEKLNNIFFTLMARGPDVDLSEVTGKEQMETQPAKKGRGRKQ 103

[Close]
BLAST of Carg16858 vs. Swiss-Prot
Match: sp|Q9SMU7|SRP09_ARATH (Signal recognition particle 9 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SRP9 PE=3 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 3.7e-48
Identity = 90/103 (87.38%), Postives = 99/103 (96.12%), Query Frame = 0 

Query: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
           MVYIASWDEFV+RSVQLFR+DP STRY +KYRHCDGKLVLKVTDN+ECLKFKTDQAQ+AK
Sbjct: 1   MVYIASWDEFVDRSVQLFRADPESTRYVMKYRHCDGKLVLKVTDNKECLKFKTDQAQEAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 104
           KMEKLNNIFFTLMARGPDVD+SEVTGK+Q++ QP KKGRGRKQ
Sbjct: 61  KMEKLNNIFFTLMARGPDVDLSEVTGKEQMETQPAKKGRGRKQ 103

[Close]
BLAST of Carg16858 vs. Swiss-Prot
Match: sp|O04438|SRP09_MAIZE (Signal recognition particle 9 kDa protein OS=Zea mays OX=4577 GN=SRP9 PE=3 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 1.9e-44
Identity = 84/103 (81.55%), Postives = 94/103 (91.26%), Query Frame = 0 

Query: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
           MVY+ SW+EFVERSVQLFR DPN+TRY +KYRHC+GKLVLKVTD+RECLKFKTDQAQDAK
Sbjct: 1   MVYVDSWEEFVERSVQLFRGDPNATRYVMKYRHCEGKLVLKVTDDRECLKFKTDQAQDAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 104
           KMEKLNNIFF LM RGPDVDISEV+GK+Q + Q  KKGRGR+Q
Sbjct: 61  KMEKLNNIFFALMTRGPDVDISEVSGKEQAEQQQAKKGRGRRQ 103

[Close]
BLAST of Carg16858 vs. Swiss-Prot
Match: sp|Q55GL2|SRP09_DICDI (Signal recognition particle 9 kDa protein OS=Dictyostelium discoideum OX=44689 GN=srp9 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.9e-16
Identity = 35/71 (49.30%), Postives = 56/71 (78.87%), Query Frame = 0 

Query: 2  VYIASWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKK 61
          +YI  WDEF ++S QL+R+DP  TR++ K+RH +GK+VLKVT++   LKF+TD+  D K+
Sbjct: 1  MYIEDWDEFYDKSEQLYRTDPKRTRFSFKFRHVEGKVVLKVTNDTVNLKFQTDKENDFKR 60

Query: 62 MEKLNNIFFTL 73
          ++++N++FF L
Sbjct: 61 IDQINSLFFRL 71

[Close]
BLAST of Carg16858 vs. Swiss-Prot
Match: sp|P21262|SRP09_CANLF (Signal recognition particle 9 kDa protein OS=Canis lupus familiaris OX=9615 GN=SRP9 PE=1 SV=2)

HSP 1 Score: 73.2 bits (178), Expect = 1.9e-12
Identity = 33/73 (45.21%), Postives = 47/73 (64.38%), Query Frame = 0 

Query: 1  MVYIASWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
          M    +W+EF   + +L+ +DP   R  +KYRH DG L +KVTD+  CL ++TDQAQD K
Sbjct: 1  MAQYQTWEEFSRAAEKLYLADPMKARVVLKYRHSDGSLCIKVTDDLVCLVYRTDQAQDVK 60

Query: 61 KMEKLNNIFFTLM 74
          K+EK ++    LM
Sbjct: 61 KIEKFHSQLMRLM 73

[Close]
BLAST of Carg16858 vs. Swiss-Prot
Match: sp|P49458|SRP09_HUMAN (Signal recognition particle 9 kDa protein OS=Homo sapiens OX=9606 GN=SRP9 PE=1 SV=2)

HSP 1 Score: 72.8 bits (177), Expect = 2.5e-12
Identity = 33/68 (48.53%), Postives = 46/68 (67.65%), Query Frame = 0 

Query: 6  SWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKL 65
          +W+EF   + +L+ +DP   R  +KYRH DG L +KVTD+  CL +KTDQAQD KK+EK 
Sbjct: 6  TWEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVKKIEKF 65

Query: 66 NNIFFTLM 74
          ++    LM
Sbjct: 66 HSQLMRLM 73

[Close]
BLAST of Carg16858 vs. TrEMBL
Match: tr|A0A1S3BLU0|A0A1S3BLU0_CUCME (Signal recognition particle 9 kDa protein OS=Cucumis melo OX=3656 GN=LOC103491251 PE=3 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 3.5e-51
Identity = 101/103 (98.06%), Postives = 102/103 (99.03%), Query Frame = 0 

Query: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
           MVYIASWDEFVERSVQLFRSDP STRYN+KYRHCDGKLVLKVTDNRECLKFKTDQAQDAK
Sbjct: 1   MVYIASWDEFVERSVQLFRSDPTSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 104
           KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ
Sbjct: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 103

[Close]
BLAST of Carg16858 vs. TrEMBL
Match: tr|A0A0A0LIQ2|A0A0A0LIQ2_CUCSA (Signal recognition particle 9 kDa protein OS=Cucumis sativus OX=3659 GN=Csa_2G224280 PE=3 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 3.5e-51
Identity = 101/103 (98.06%), Postives = 102/103 (99.03%), Query Frame = 0 

Query: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
           MVYIASWDEFVERSVQLFRSDP STRYN+KYRHCDGKLVLKVTDNRECLKFKTDQAQDAK
Sbjct: 1   MVYIASWDEFVERSVQLFRSDPTSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 104
           KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ
Sbjct: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 103

[Close]
BLAST of Carg16858 vs. TrEMBL
Match: tr|A0A2P4KSP1|A0A2P4KSP1_QUESU (Signal recognition particle 9 kDa protein OS=Quercus suber OX=58331 GN=CFP56_37574 PE=3 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 3.1e-47
Identity = 92/103 (89.32%), Postives = 100/103 (97.09%), Query Frame = 0 

Query: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
           MVYI SWDEFVERSVQLFR+DP+STRY +KYRHCDGKLVLKVTDNRECLKFKTDQAQDAK
Sbjct: 1   MVYITSWDEFVERSVQLFRADPDSTRYVMKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 104
           KMEKLNNIFFTLMARGP+ D++EVTGK+Q+DAQPTKKGRGRKQ
Sbjct: 61  KMEKLNNIFFTLMARGPEADVAEVTGKEQIDAQPTKKGRGRKQ 103

[Close]
BLAST of Carg16858 vs. TrEMBL
Match: tr|A0A2N9I406|A0A2N9I406_FAGSY (Signal recognition particle 9 kDa protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS48678 PE=3 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 4.0e-47
Identity = 92/103 (89.32%), Postives = 99/103 (96.12%), Query Frame = 0 

Query: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
           MVYI SWDEFVERSVQLFR+DP+STRY +KYRHCDGKLVLKVTDN+ECLKFKTDQAQDAK
Sbjct: 1   MVYITSWDEFVERSVQLFRADPDSTRYVMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 104
           KMEKLNNIFFTLMARGPD D+SEV GK+Q+DAQPTKKGRGRKQ
Sbjct: 61  KMEKLNNIFFTLMARGPDADVSEVAGKEQIDAQPTKKGRGRKQ 103

[Close]
BLAST of Carg16858 vs. TrEMBL
Match: tr|A0A2P6PVJ5|A0A2P6PVJ5_ROSCH (Signal recognition particle 9 kDa protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0289311 PE=3 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 4.0e-47
Identity = 93/103 (90.29%), Postives = 100/103 (97.09%), Query Frame = 0 

Query: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
           MVY+ SWDEFVERSVQLFR+DP+STRY +KYRHCDGKLVLKVTDN+ECLKFKTDQAQDAK
Sbjct: 1   MVYVTSWDEFVERSVQLFRNDPDSTRYVMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 104
           KMEKLNNIFFTLMARGP+VD SEVTGKDQ+DAQPTKKGRGRKQ
Sbjct: 61  KMEKLNNIFFTLMARGPEVDPSEVTGKDQMDAQPTKKGRGRKQ 103

The following BLAST results are available for this feature:
BLAST of Carg16858 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022963515.18.2e-52100.00signal recognition particle 9 kDa protein [Cucurbita moschata] >XP_022963516.1 s... [more]
XP_022967500.13.1e-5199.03signal recognition particle 9 kDa protein-like [Cucurbita maxima] >XP_022967501.... [more]
XP_004154105.15.3e-5198.06PREDICTED: signal recognition particle 9 kDa protein [Cucumis sativus] >XP_00415... [more]
XP_022146059.19.0e-5197.09signal recognition particle 9 kDa protein isoform X1 [Momordica charantia] >XP_0... [more]
XP_022930934.13.4e-5096.12signal recognition particle 9 kDa protein-like [Cucurbita moschata] >XP_02293093... [more]
BLAST of Carg16858 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G49100.12.1e-4987.38Signal recognition particle, SRP9/SRP14 subunit[more]
BLAST of Carg16858 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SMU7|SRP09_ARATH3.7e-4887.38Signal recognition particle 9 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SRP... [more]
sp|O04438|SRP09_MAIZE1.9e-4481.55Signal recognition particle 9 kDa protein OS=Zea mays OX=4577 GN=SRP9 PE=3 SV=1[more]
sp|Q55GL2|SRP09_DICDI4.9e-1649.30Signal recognition particle 9 kDa protein OS=Dictyostelium discoideum OX=44689 G... [more]
sp|P21262|SRP09_CANLF1.9e-1245.21Signal recognition particle 9 kDa protein OS=Canis lupus familiaris OX=9615 GN=S... [more]
sp|P49458|SRP09_HUMAN2.5e-1248.53Signal recognition particle 9 kDa protein OS=Homo sapiens OX=9606 GN=SRP9 PE=1 S... [more]
BLAST of Carg16858 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BLU0|A0A1S3BLU0_CUCME3.5e-5198.06Signal recognition particle 9 kDa protein OS=Cucumis melo OX=3656 GN=LOC10349125... [more]
tr|A0A0A0LIQ2|A0A0A0LIQ2_CUCSA3.5e-5198.06Signal recognition particle 9 kDa protein OS=Cucumis sativus OX=3659 GN=Csa_2G22... [more]
tr|A0A2P4KSP1|A0A2P4KSP1_QUESU3.1e-4789.32Signal recognition particle 9 kDa protein OS=Quercus suber OX=58331 GN=CFP56_375... [more]
tr|A0A2N9I406|A0A2N9I406_FAGSY4.0e-4789.32Signal recognition particle 9 kDa protein OS=Fagus sylvatica OX=28930 GN=FSB_LOC... [more]
tr|A0A2P6PVJ5|A0A2P6PVJ5_ROSCH4.0e-4790.29Signal recognition particle 9 kDa protein OS=Rosa chinensis OX=74649 GN=RchiOBHm... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:00083127S RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006614SRP-dependent cotranslational protein targeting to membrane
GO:0045900negative regulation of translational elongation
Vocabulary: Cellular Component
TermDefinition
GO:0048500signal recognition particle
Vocabulary: INTERPRO
TermDefinition
IPR009018Signal_recog_particle_SRP9/14
IPR008832Signal_recog_particle_SRP9
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045900 negative regulation of translational elongation
biological_process GO:0006614 SRP-dependent cotranslational protein targeting to membrane
cellular_component GO:0048500 signal recognition particle
molecular_function GO:0008312 7S RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg16858-RACarg16858-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF05486SRP9-21coord: 5..66
e-value: 1.7E-10
score: 41.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 83..97
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 83..103
NoneNo IPR availablePANTHERPTHR12834SIGNAL RECOGNITION PARTICLE 9 KDA PROTEINcoord: 1..100
IPR008832Signal recognition particle, SRP9 subunitPIRSFPIRSF017029SRP9coord: 1..97
e-value: 6.2E-39
score: 129.8
IPR009018Signal recognition particle, SRP9/SRP14 subunitGENE3DG3DSA:3.30.720.10coord: 2..83
e-value: 1.0E-34
score: 120.0
IPR009018Signal recognition particle, SRP9/SRP14 subunitSUPERFAMILYSSF54762Signal recognition particle alu RNA binding heterodimer, SRP9/14coord: 5..79

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg16858Cla006016Watermelon (97103) v1carwmB0750
Carg16858MELO3C014306Melon (DHL92) v3.5.1carmeB0746
Carg16858ClCG07G000650Watermelon (Charleston Gray)carwcgB0730
Carg16858CmaCh19G000610Cucurbita maxima (Rimu)carcmaB1049
Carg16858CmaCh02G017720Cucurbita maxima (Rimu)carcmaB1051
Carg16858CmoCh02G018150Cucurbita moschata (Rifu)carcmoB1023
Carg16858CmoCh19G000590Cucurbita moschata (Rifu)carcmoB1021
Carg16858Lsi05G009750Bottle gourd (USVL1VR-Ls)carlsiB689
Carg16858Cp4.1LG05g01410Cucurbita pepo (Zucchini)carcpeB1062
Carg16858Cp4.1LG15g00480Cucurbita pepo (Zucchini)carcpeB1057
Carg16858MELO3C014306.2Melon (DHL92) v3.6.1carmedB0759
Carg16858Cla97C07G128950Watermelon (97103) v2carwmbB0788
Carg16858Bhi05G000196Wax gourdcarwgoB0888
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg16858Carg08986Silver-seed gourdcarcarB599
The following block(s) are covering this gene:
GeneOrganismBlock
Carg16858Silver-seed gourdcarcarB262
Carg16858Cucumber (Gy14) v2carcgybB0745
Carg16858Cucumber (Gy14) v2carcgybB0749
Carg16858Cucurbita maxima (Rimu)carcmaB1052
Carg16858Cucurbita moschata (Rifu)carcmoB1025
Carg16858Cucurbita pepo (Zucchini)carcpeB1058
Carg16858Wild cucumber (PI 183967)carcpiB0783
Carg16858Wild cucumber (PI 183967)carcpiB0789
Carg16858Cucumber (Chinese Long) v2carcuB0766
Carg16858Cucumber (Chinese Long) v2carcuB0771
Carg16858Cucumber (Chinese Long) v3carcucB0786
Carg16858Cucumber (Chinese Long) v3carcucB0790
Carg16858Cucumber (Chinese Long) v3carcucB0792
Carg16858Bottle gourd (USVL1VR-Ls)carlsiB687
Carg16858Melon (DHL92) v3.6.1carmedB0760
Carg16858Watermelon (Charleston Gray)carwcgB0728
Carg16858Watermelon (97103) v1carwmB0753
Carg16858Watermelon (97103) v2carwmbB0787