CsaV3_2G013670 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G013670
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionSignal recognition particle 9 kDa protein
Locationchr2 : 11225030 .. 11227332 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTACATAGCTTCGTGGGATGAATTCGTCGAGCGTTCTGTCCAATTGTTCCGTTCCGATCCCACCTCCGTAAGTTTTTTCTTCCAAATTCCATTCCCTAGACATTGTTTCCCGTTTGAATTCTCAGAAATTAGATCGCATTGTTGTATTATCATCCCTCAATTGCATAATGAATTGTGAAAGACGTTCTAATCCATCTATCTGCCTAATTTGAAAACACTGTCCACGATTACGAACTTACAGTCTACTCATATGTTCCGTTTATCGCATCGTTCGTTGTTTTTTCAATTCATTCTAACTGCGATCGCTGTTTTCTTTTCCAATTCCAATGGGGATTTAGACGAGGTATAACATAAAGTATCGACACTGCGATGGGAAACTGGTTCTTAAAGTCACCGATAACCGTGAGGTAAAGAATTTTGTGTTGGGATTTTGATTAATATCATGTGTTTTTTCTGGTTAGTGATCAGGATGGGAATATTGATTATTGATTTTTAACTGTATGCTTGGTTCTGTTTTTCATCTGGCAAATTCTTGGCCTTATAAATGTTAAACGCCAATGTATGAAGAAGCGTGCTGAGTCTTTAATGCACGTGTATCTAAGTAGACTTGTGATCTGCTTATCCACTAAATTAACCTGTAAAGTTTCAAGTAGACCATAGTTGAGTTCGACATATGCCATTAAACGATGCCTGATGCCACAACTTTTCATGTGACCATGGTTAGAAATGGATTTTGACGTGCCTCTTTCTAAGGCATGATATAATCACCAAAAAGAAAGGACATTGTCTTTGAGATGGTTGAAGTAGAAGAGACAATTTTAAAGTAGCACCAACTGTAGTTTAGTTAGTCTTCATTGTGCACTAGCTGGTGCTGGTCAGTGGGGTGAGATAGTGTTCCGTTGGTGTTCTCAGGGAGGTCTTTTGGAGAGTTTGCTTCAACACGAAAATGAAGACTTCGAGAACAAATATTGGATCTTCCTCTTCCTCTGATCCATCACCCTTTCTTGCTTGTATTACAGAGAAAAAGATCAGATTCTGCCTCTGATCCGTTTTCTCCTGAGGGTTTCCTTTCGAAATTGAGGAAGAAATGCCTTTACCAATCCTTTCATGAAGAGATCAGCAATTGATCTTTACTTCTCATGGTTAACAATTAGCAATTTAGAAATCAGGTCTTAGAACTAGCCACTATTCCAAAGACTCCTTTGGGGTCTTATATCTTTCATAGGAAGATTAGGATGTGCGAATGTTTCTTTGTCATGTGGAAAAGAAAAAACTAATTAGTGCAAAATGCATAGATACAAGATATCAACTGGGAATCTGATGGGTGATATTCATATGTTTATGCTTGCTTGTATGGAGAATTTTCTGTATATCTGCACATATTGAAACAAACAATCTGGAATTTAACCAAAACTGACTTAAGGGCATATGCCAAATCATAACAATATCATTATCGACATAGTAGTGGCTATCTTTCTAGATGTGTTAGGTATACTAATTTTCTCTTGTTTTTTTCTTCCTTTTGTTTTCTCCCTGTTTTCCAGTGTCTTAAGTTCAAGACTGACCAGGCACAGGATGCTAAGAAGATGGAAAAGCTCAACAACATATTCTTCACTCTGATGGCCCGGGGCCCTGATGGTATTTTGCTTCGAGTTTATTTTGATTAATGAAATATCTGAATACTCTGTTGAATAATAATTAACTACTTGCTGGCGTCATGATTTTGTACTAAAATTTTGTTACAATTTGAATTCTTGTTGTCCATACAAATGAATGGAATGGAAAACTATGTATTCTCTAAATGCATGAAAGTTCCATATCCCTAAATTGCAGCTTGCAGCAACTTGTAAACTAGTTCCATGATAATTTCAGTACTTGAAGGATGAGTTTGCTTCCCTTCTGAATGCTGTTTGAGCCCATGAAAGAATATAGGCCGCTGCTTGCTAACTTTGTTATAGGCCAAAATGGTTCATGGCCTGCCTGGAGTTCTCACACAACCTGTGATCGATATATCCAATCCTAGTATCCATCATCCATGGAACATCATTCTTAATCTATATAATTTTTGTTTACCCAGTCATTCAGTAAATCTAATGTGAACTCAGTTCCATTAATTATGTGCAGTGCCTGGACTAATAATTTCCATTCTTAATCTATATAATTTTTGTTTACCCAGCCATTCGTAAATCTAAGCCTGCTTGGACTTATCTCTTATGTGCAGTGGATATATCAGAAGTGACAGGCAAGGACCAGGTTGATGCACAGCCAACCAAGAAAGGAAGGGGGAGGAAGCAATGA

mRNA sequence

ATGGTTTACATAGCTTCGTGGGATGAATTCGTCGAGCGTTCTGTCCAATTGTTCCGTTCCGATCCCACCTCCACGAGGTATAACATAAAGTATCGACACTGCGATGGGAAACTGGTTCTTAAAGTCACCGATAACCGTGAGTGTCTTAAGTTCAAGACTGACCAGGCACAGGATGCTAAGAAGATGGAAAAGCTCAACAACATATTCTTCACTCTGATGGCCCGGGGCCCTGATGTGGATATATCAGAAGTGACAGGCAAGGACCAGGTTGATGCACAGCCAACCAAGAAAGGAAGGGGGAGGAAGCAATGA

Coding sequence (CDS)

ATGGTTTACATAGCTTCGTGGGATGAATTCGTCGAGCGTTCTGTCCAATTGTTCCGTTCCGATCCCACCTCCACGAGGTATAACATAAAGTATCGACACTGCGATGGGAAACTGGTTCTTAAAGTCACCGATAACCGTGAGTGTCTTAAGTTCAAGACTGACCAGGCACAGGATGCTAAGAAGATGGAAAAGCTCAACAACATATTCTTCACTCTGATGGCCCGGGGCCCTGATGTGGATATATCAGAAGTGACAGGCAAGGACCAGGTTGATGCACAGCCAACCAAGAAAGGAAGGGGGAGGAAGCAATGA

Protein sequence

MVYIASWDEFVERSVQLFRSDPTSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ
Homology
[Close]
BLAST of CsaV3_2G013670 vs. NCBI nr
Match: XP_004154105.1 (PREDICTED: signal recognition particle 9 kDa protein [Cucumis sativus] >XP_004154106.1 PREDICTED: signal recognition particle 9 kDa protein [Cucumis sativus] >XP_008449345.1 PREDICTED: signal recognition particle 9 kDa protein [Cucumis melo] >XP_008449346.1 PREDICTED: signal recognition particle 9 kDa protein [Cucumis melo] >KGN61688.1 hypothetical protein Csa_2G224280 [Cucumis sativus])

HSP 1 Score: 212.6 bits (540), Expect = 6.3e-52
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MVYIASWDEFVERSVQLFRSDPTSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
           MVYIASWDEFVERSVQLFRSDPTSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK
Sbjct: 1   MVYIASWDEFVERSVQLFRSDPTSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 104
           KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ
Sbjct: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 103

[Close]
BLAST of CsaV3_2G013670 vs. NCBI nr
Match: XP_022963515.1 (signal recognition particle 9 kDa protein [Cucurbita moschata] >XP_022963516.1 signal recognition particle 9 kDa protein [Cucurbita moschata])

HSP 1 Score: 210.3 bits (534), Expect = 3.1e-51
Identity = 101/103 (98.06%), Postives = 102/103 (99.03%), Query Frame = 0 

Query: 1   MVYIASWDEFVERSVQLFRSDPTSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
           MVYIASWDEFVERSVQLFRSDP STRYN+KYRHCDGKLVLKVTDNRECLKFKTDQAQDAK
Sbjct: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 104
           KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ
Sbjct: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 103

[Close]
BLAST of CsaV3_2G013670 vs. NCBI nr
Match: XP_022967500.1 (signal recognition particle 9 kDa protein-like [Cucurbita maxima] >XP_022967501.1 signal recognition particle 9 kDa protein-like [Cucurbita maxima] >XP_022967502.1 signal recognition particle 9 kDa protein-like [Cucurbita maxima] >XP_022967503.1 signal recognition particle 9 kDa protein-like [Cucurbita maxima])

HSP 1 Score: 208.4 bits (529), Expect = 1.2e-50
Identity = 100/103 (97.09%), Postives = 102/103 (99.03%), Query Frame = 0 

Query: 1   MVYIASWDEFVERSVQLFRSDPTSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
           MVYIASWDEFVERSVQLFRSDP STRYN+KYRHCDGKLVLKVTDNRECLKFKTDQAQDAK
Sbjct: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNVKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 104
           KMEKL+NIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ
Sbjct: 61  KMEKLDNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 103

[Close]
BLAST of CsaV3_2G013670 vs. NCBI nr
Match: XP_022146059.1 (signal recognition particle 9 kDa protein isoform X1 [Momordica charantia] >XP_022146061.1 signal recognition particle 9 kDa protein isoform X1 [Momordica charantia])

HSP 1 Score: 207.6 bits (527), Expect = 2.0e-50
Identity = 100/103 (97.09%), Postives = 101/103 (98.06%), Query Frame = 0 

Query: 1   MVYIASWDEFVERSVQLFRSDPTSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
           MVYI SWDEFVERSVQLFRSDP STRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK
Sbjct: 1   MVYITSWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 104
           KMEKLNNIFFTLMARGPDVDISEVTGK+QVDAQPTKKGRGRKQ
Sbjct: 61  KMEKLNNIFFTLMARGPDVDISEVTGKEQVDAQPTKKGRGRKQ 103

[Close]
BLAST of CsaV3_2G013670 vs. NCBI nr
Match: XP_022930934.1 (signal recognition particle 9 kDa protein-like [Cucurbita moschata] >XP_022930935.1 signal recognition particle 9 kDa protein-like [Cucurbita moschata] >XP_022995181.1 signal recognition particle 9 kDa protein [Cucurbita maxima] >XP_022995182.1 signal recognition particle 9 kDa protein [Cucurbita maxima] >XP_023533640.1 signal recognition particle 9 kDa protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 205.7 bits (522), Expect = 7.7e-50
Identity = 99/103 (96.12%), Postives = 100/103 (97.09%), Query Frame = 0 

Query: 1   MVYIASWDEFVERSVQLFRSDPTSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
           MVYIASWDEFVERSVQLFRSDP STRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK
Sbjct: 1   MVYIASWDEFVERSVQLFRSDPNSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 104
           KMEKLNNIFF LMARGPDVDISEVTGK+Q DAQPTKKGRGRKQ
Sbjct: 61  KMEKLNNIFFALMARGPDVDISEVTGKEQADAQPTKKGRGRKQ 103

[Close]
BLAST of CsaV3_2G013670 vs. TAIR10
Match: AT3G49100.1 (Signal recognition particle, SRP9/SRP14 subunit)

HSP 1 Score: 192.2 bits (487), Expect = 1.6e-49
Identity = 90/103 (87.38%), Postives = 99/103 (96.12%), Query Frame = 0 

Query: 1   MVYIASWDEFVERSVQLFRSDPTSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
           MVYIASWDEFV+RSVQLFR+DP STRY +KYRHCDGKLVLKVTDN+ECLKFKTDQAQ+AK
Sbjct: 1   MVYIASWDEFVDRSVQLFRADPESTRYVMKYRHCDGKLVLKVTDNKECLKFKTDQAQEAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 104
           KMEKLNNIFFTLMARGPDVD+SEVTGK+Q++ QP KKGRGRKQ
Sbjct: 61  KMEKLNNIFFTLMARGPDVDLSEVTGKEQMETQPAKKGRGRKQ 103

[Close]
BLAST of CsaV3_2G013670 vs. Swiss-Prot
Match: sp|Q9SMU7|SRP09_ARATH (Signal recognition particle 9 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SRP9 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.9e-48
Identity = 90/103 (87.38%), Postives = 99/103 (96.12%), Query Frame = 0 

Query: 1   MVYIASWDEFVERSVQLFRSDPTSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
           MVYIASWDEFV+RSVQLFR+DP STRY +KYRHCDGKLVLKVTDN+ECLKFKTDQAQ+AK
Sbjct: 1   MVYIASWDEFVDRSVQLFRADPESTRYVMKYRHCDGKLVLKVTDNKECLKFKTDQAQEAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 104
           KMEKLNNIFFTLMARGPDVD+SEVTGK+Q++ QP KKGRGRKQ
Sbjct: 61  KMEKLNNIFFTLMARGPDVDLSEVTGKEQMETQPAKKGRGRKQ 103

[Close]
BLAST of CsaV3_2G013670 vs. Swiss-Prot
Match: sp|O04438|SRP09_MAIZE (Signal recognition particle 9 kDa protein OS=Zea mays OX=4577 GN=SRP9 PE=3 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 5.6e-44
Identity = 83/103 (80.58%), Postives = 93/103 (90.29%), Query Frame = 0 

Query: 1   MVYIASWDEFVERSVQLFRSDPTSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
           MVY+ SW+EFVERSVQLFR DP +TRY +KYRHC+GKLVLKVTD+RECLKFKTDQAQDAK
Sbjct: 1   MVYVDSWEEFVERSVQLFRGDPNATRYVMKYRHCEGKLVLKVTDDRECLKFKTDQAQDAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 104
           KMEKLNNIFF LM RGPDVDISEV+GK+Q + Q  KKGRGR+Q
Sbjct: 61  KMEKLNNIFFALMTRGPDVDISEVSGKEQAEQQQAKKGRGRRQ 103

[Close]
BLAST of CsaV3_2G013670 vs. Swiss-Prot
Match: sp|Q55GL2|SRP09_DICDI (Signal recognition particle 9 kDa protein OS=Dictyostelium discoideum OX=44689 GN=srp9 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 6.5e-16
Identity = 35/71 (49.30%), Postives = 56/71 (78.87%), Query Frame = 0 

Query: 2  VYIASWDEFVERSVQLFRSDPTSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKK 61
          +YI  WDEF ++S QL+R+DP  TR++ K+RH +GK+VLKVT++   LKF+TD+  D K+
Sbjct: 1  MYIEDWDEFYDKSEQLYRTDPKRTRFSFKFRHVEGKVVLKVTNDTVNLKFQTDKENDFKR 60

Query: 62 MEKLNNIFFTL 73
          ++++N++FF L
Sbjct: 61 IDQINSLFFRL 71

[Close]
BLAST of CsaV3_2G013670 vs. Swiss-Prot
Match: sp|P21262|SRP09_CANLF (Signal recognition particle 9 kDa protein OS=Canis lupus familiaris OX=9615 GN=SRP9 PE=1 SV=2)

HSP 1 Score: 73.6 bits (179), Expect = 1.5e-12
Identity = 33/73 (45.21%), Postives = 47/73 (64.38%), Query Frame = 0 

Query: 1  MVYIASWDEFVERSVQLFRSDPTSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
          M    +W+EF   + +L+ +DP   R  +KYRH DG L +KVTD+  CL ++TDQAQD K
Sbjct: 1  MAQYQTWEEFSRAAEKLYLADPMKARVVLKYRHSDGSLCIKVTDDLVCLVYRTDQAQDVK 60

Query: 61 KMEKLNNIFFTLM 74
          K+EK ++    LM
Sbjct: 61 KIEKFHSQLMRLM 73

[Close]
BLAST of CsaV3_2G013670 vs. Swiss-Prot
Match: sp|P49458|SRP09_HUMAN (Signal recognition particle 9 kDa protein OS=Homo sapiens OX=9606 GN=SRP9 PE=1 SV=2)

HSP 1 Score: 73.6 bits (179), Expect = 1.5e-12
Identity = 33/68 (48.53%), Postives = 46/68 (67.65%), Query Frame = 0 

Query: 6  SWDEFVERSVQLFRSDPTSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAKKMEKL 65
          +W+EF   + +L+ +DP   R  +KYRH DG L +KVTD+  CL +KTDQAQD KK+EK 
Sbjct: 6  TWEEFSRAAEKLYLADPMKARVVLKYRHSDGNLCVKVTDDLVCLVYKTDQAQDVKKIEKF 65

Query: 66 NNIFFTLM 74
          ++    LM
Sbjct: 66 HSQLMRLM 73

[Close]
BLAST of CsaV3_2G013670 vs. TrEMBL
Match: tr|A0A1S3BLU0|A0A1S3BLU0_CUCME (Signal recognition particle 9 kDa protein OS=Cucumis melo OX=3656 GN=LOC103491251 PE=3 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 4.2e-52
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MVYIASWDEFVERSVQLFRSDPTSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
           MVYIASWDEFVERSVQLFRSDPTSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK
Sbjct: 1   MVYIASWDEFVERSVQLFRSDPTSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 104
           KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ
Sbjct: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 103

[Close]
BLAST of CsaV3_2G013670 vs. TrEMBL
Match: tr|A0A0A0LIQ2|A0A0A0LIQ2_CUCSA (Signal recognition particle 9 kDa protein OS=Cucumis sativus OX=3659 GN=Csa_2G224280 PE=3 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 4.2e-52
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MVYIASWDEFVERSVQLFRSDPTSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
           MVYIASWDEFVERSVQLFRSDPTSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK
Sbjct: 1   MVYIASWDEFVERSVQLFRSDPTSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 104
           KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ
Sbjct: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 103

[Close]
BLAST of CsaV3_2G013670 vs. TrEMBL
Match: tr|A0A2P4KSP1|A0A2P4KSP1_QUESU (Signal recognition particle 9 kDa protein OS=Quercus suber OX=58331 GN=CFP56_37574 PE=3 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 3.1e-47
Identity = 92/103 (89.32%), Postives = 99/103 (96.12%), Query Frame = 0 

Query: 1   MVYIASWDEFVERSVQLFRSDPTSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
           MVYI SWDEFVERSVQLFR+DP STRY +KYRHCDGKLVLKVTDNRECLKFKTDQAQDAK
Sbjct: 1   MVYITSWDEFVERSVQLFRADPDSTRYVMKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 104
           KMEKLNNIFFTLMARGP+ D++EVTGK+Q+DAQPTKKGRGRKQ
Sbjct: 61  KMEKLNNIFFTLMARGPEADVAEVTGKEQIDAQPTKKGRGRKQ 103

[Close]
BLAST of CsaV3_2G013670 vs. TrEMBL
Match: tr|A0A2N9I406|A0A2N9I406_FAGSY (Signal recognition particle 9 kDa protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS48678 PE=3 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 4.0e-47
Identity = 92/103 (89.32%), Postives = 98/103 (95.15%), Query Frame = 0 

Query: 1   MVYIASWDEFVERSVQLFRSDPTSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
           MVYI SWDEFVERSVQLFR+DP STRY +KYRHCDGKLVLKVTDN+ECLKFKTDQAQDAK
Sbjct: 1   MVYITSWDEFVERSVQLFRADPDSTRYVMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 104
           KMEKLNNIFFTLMARGPD D+SEV GK+Q+DAQPTKKGRGRKQ
Sbjct: 61  KMEKLNNIFFTLMARGPDADVSEVAGKEQIDAQPTKKGRGRKQ 103

[Close]
BLAST of CsaV3_2G013670 vs. TrEMBL
Match: tr|A0A2P6PVJ5|A0A2P6PVJ5_ROSCH (Signal recognition particle 9 kDa protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0289311 PE=3 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 4.0e-47
Identity = 93/103 (90.29%), Postives = 99/103 (96.12%), Query Frame = 0 

Query: 1   MVYIASWDEFVERSVQLFRSDPTSTRYNIKYRHCDGKLVLKVTDNRECLKFKTDQAQDAK 60
           MVY+ SWDEFVERSVQLFR+DP STRY +KYRHCDGKLVLKVTDN+ECLKFKTDQAQDAK
Sbjct: 1   MVYVTSWDEFVERSVQLFRNDPDSTRYVMKYRHCDGKLVLKVTDNKECLKFKTDQAQDAK 60

Query: 61  KMEKLNNIFFTLMARGPDVDISEVTGKDQVDAQPTKKGRGRKQ 104
           KMEKLNNIFFTLMARGP+VD SEVTGKDQ+DAQPTKKGRGRKQ
Sbjct: 61  KMEKLNNIFFTLMARGPEVDPSEVTGKDQMDAQPTKKGRGRKQ 103

The following BLAST results are available for this feature:
BLAST of CsaV3_2G013670 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004154105.16.3e-52100.00PREDICTED: signal recognition particle 9 kDa protein [Cucumis sativus] >XP_00415... [more]
XP_022963515.13.1e-5198.06signal recognition particle 9 kDa protein [Cucurbita moschata] >XP_022963516.1 s... [more]
XP_022967500.11.2e-5097.09signal recognition particle 9 kDa protein-like [Cucurbita maxima] >XP_022967501.... [more]
XP_022146059.12.0e-5097.09signal recognition particle 9 kDa protein isoform X1 [Momordica charantia] >XP_0... [more]
XP_022930934.17.7e-5096.12signal recognition particle 9 kDa protein-like [Cucurbita moschata] >XP_02293093... [more]
BLAST of CsaV3_2G013670 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G49100.11.6e-4987.38Signal recognition particle, SRP9/SRP14 subunit[more]
BLAST of CsaV3_2G013670 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SMU7|SRP09_ARATH2.9e-4887.38Signal recognition particle 9 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SRP... [more]
sp|O04438|SRP09_MAIZE5.6e-4480.58Signal recognition particle 9 kDa protein OS=Zea mays OX=4577 GN=SRP9 PE=3 SV=1[more]
sp|Q55GL2|SRP09_DICDI6.5e-1649.30Signal recognition particle 9 kDa protein OS=Dictyostelium discoideum OX=44689 G... [more]
sp|P21262|SRP09_CANLF1.5e-1245.21Signal recognition particle 9 kDa protein OS=Canis lupus familiaris OX=9615 GN=S... [more]
sp|P49458|SRP09_HUMAN1.5e-1248.53Signal recognition particle 9 kDa protein OS=Homo sapiens OX=9606 GN=SRP9 PE=1 S... [more]
BLAST of CsaV3_2G013670 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BLU0|A0A1S3BLU0_CUCME4.2e-52100.00Signal recognition particle 9 kDa protein OS=Cucumis melo OX=3656 GN=LOC10349125... [more]
tr|A0A0A0LIQ2|A0A0A0LIQ2_CUCSA4.2e-52100.00Signal recognition particle 9 kDa protein OS=Cucumis sativus OX=3659 GN=Csa_2G22... [more]
tr|A0A2P4KSP1|A0A2P4KSP1_QUESU3.1e-4789.32Signal recognition particle 9 kDa protein OS=Quercus suber OX=58331 GN=CFP56_375... [more]
tr|A0A2N9I406|A0A2N9I406_FAGSY4.0e-4789.32Signal recognition particle 9 kDa protein OS=Fagus sylvatica OX=28930 GN=FSB_LOC... [more]
tr|A0A2P6PVJ5|A0A2P6PVJ5_ROSCH4.0e-4790.29Signal recognition particle 9 kDa protein OS=Rosa chinensis OX=74649 GN=RchiOBHm... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0045900negative regulation of translational elongation
GO:0006614SRP-dependent cotranslational protein targeting to membrane
Vocabulary: Molecular Function
TermDefinition
GO:00083127S RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0048500signal recognition particle
Vocabulary: INTERPRO
TermDefinition
IPR008832Signal_recog_particle_SRP9
IPR009018Signal_recog_particle_SRP9/14
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045900 negative regulation of translational elongation
biological_process GO:0006614 SRP-dependent cotranslational protein targeting to membrane
biological_process GO:0006616 SRP-dependent cotranslational protein targeting to membrane, translocation
cellular_component GO:0048500 signal recognition particle
cellular_component GO:0005786 signal recognition particle, endoplasmic reticulum targeting
cellular_component GO:0005785 signal recognition particle receptor complex
molecular_function GO:0008312 7S RNA binding
molecular_function GO:0005047 signal recognition particle binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G013670.1CsaV3_2G013670.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009018Signal recognition particle, SRP9/SRP14 subunitGENE3DG3DSA:3.30.720.10coord: 2..83
e-value: 3.0E-34
score: 118.5
IPR009018Signal recognition particle, SRP9/SRP14 subunitSUPERFAMILYSSF54762Signal recognition particle alu RNA binding heterodimer, SRP9/14coord: 5..79
IPR008832Signal recognition particle, SRP9 subunitPIRSFPIRSF017029SRP9coord: 1..97
e-value: 6.2E-39
score: 129.8
NoneNo IPR availablePFAMPF05486SRP9-21coord: 5..66
e-value: 8.8E-11
score: 42.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 83..97
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 83..103
NoneNo IPR availablePANTHERPTHR12834SIGNAL RECOGNITION PARTICLE 9 KDA PROTEINcoord: 1..100

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_2G013670CSPI02G11200Wild cucumber (PI 183967)cpicucB080
CsaV3_2G013670Cucsa.168380Cucumber (Gy14) v1cgycucB269
CsaV3_2G013670CmaCh02G017720Cucurbita maxima (Rimu)cmacucB0699
CsaV3_2G013670CmaCh19G000610Cucurbita maxima (Rimu)cmacucB0612
CsaV3_2G013670CmoCh19G000590Cucurbita moschata (Rifu)cmocucB0596
CsaV3_2G013670CmoCh02G018150Cucurbita moschata (Rifu)cmocucB0684
CsaV3_2G013670Cp4.1LG15g00480Cucurbita pepo (Zucchini)cpecucB0294
CsaV3_2G013670Cp4.1LG05g01410Cucurbita pepo (Zucchini)cpecucB0891
CsaV3_2G013670CsGy2G011230Cucumber (Gy14) v2cgybcucB064
CsaV3_2G013670Carg08986Silver-seed gourdcarcucB0813
CsaV3_2G013670Cla006016Watermelon (97103) v1cucwmB131
CsaV3_2G013670MELO3C014306Melon (DHL92) v3.5.1cucmeB145
CsaV3_2G013670ClCG07G000650Watermelon (Charleston Gray)cucwcgB169
CsaV3_2G013670Lsi05G009750Bottle gourd (USVL1VR-Ls)cuclsiB141
CsaV3_2G013670MELO3C014306.2Melon (DHL92) v3.6.1cucmedB138
CsaV3_2G013670Cla97C07G128950Watermelon (97103) v2cucwmbB156
CsaV3_2G013670Bhi05G000196Wax gourdcucwgoB153
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G013670Cucumber (Gy14) v2cgybcucB069
CsaV3_2G013670Cucurbita maxima (Rimu)cmacucB0613
CsaV3_2G013670Cucurbita maxima (Rimu)cmacucB0610
CsaV3_2G013670Cucurbita moschata (Rifu)cmocucB0418
CsaV3_2G013670Cucurbita moschata (Rifu)cmocucB0597
CsaV3_2G013670Cucurbita pepo (Zucchini)cpecucB0152
CsaV3_2G013670Cucurbita pepo (Zucchini)cpecucB0745
CsaV3_2G013670Wild cucumber (PI 183967)cpicucB086
CsaV3_2G013670Bottle gourd (USVL1VR-Ls)cuclsiB138
CsaV3_2G013670Melon (DHL92) v3.5.1cucmeB139
CsaV3_2G013670Melon (DHL92) v3.6.1cucmedB132
CsaV3_2G013670Watermelon (Charleston Gray)cucwcgB166
CsaV3_2G013670Watermelon (Charleston Gray)cucwcgB160
CsaV3_2G013670Watermelon (97103) v1cucwmB183
CsaV3_2G013670Watermelon (97103) v2cucwmbB154
CsaV3_2G013670Watermelon (97103) v2cucwmbB147
CsaV3_2G013670Silver-seed gourdcarcucB0785