Lsi05G006070 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi05G006070
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionKua-ubiquitin conjugating enzyme hybrid, localisation
Locationchr05 : 7522817 .. 7523773 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTATCTTAGCTCAAAACAAGTTCCTTCCGAGCTCCCGAACCCATGTTAGCCCATGCAGCTCTCCGATTCCGCGCAGAGTTGTCTATTGCATAGCCAACACCACGGTTAACGTTGTTGCTGCTGGTGCTACCACCACCAATCCGAAGCATGCCAATGGCCAACTAGTCATTGAACGTGAAGTTATATCTCCTACTCCACTTACATTGGTCAATTCCTCCACCTATTATTCTGTTCTTAATGACCCGAGTTTACGATCGACATGGAGTCATCGTGCGTGGGTGGCCAGTGGGTGCACCACGGTGCTCGTCTCTTTGGCAAAATCAATAGTAGGTGCAGCCAGTTCACATATCTGGCTTGAGCCTGCTTTAGCAGCATTGGTAGGCTACATTTTAGCTGATCTTGGATCTGGAGTTTATCATTGGGGTATCGATAACTATGGTGATGCGTCAACTCCAATCTTCGGCACCCAAATAGAAGCATTCCAAGGCCATCACAAGTGGCCATGGACAATCACGAAGCGTCAGTTCGCCAACAATCTGTACGCCTTGGCACGAGCTGTGACCTTCACCGTACTTCCTATAAGCCTGGCATTTGATGATCCGGTTCTACAGGGTTTTGTTGGTGTGTGCTCAGGTTGCATAATGTTTAGCCAACAGTTTCATGCATGGGCTCATGGTAAAAAGAGTGAACTACCGCCACTCGTGGTGGCGATGCAAGATGCTGGCCTGCTTGTGTCACGAATGCAGCATTCTGCACATCATCGTCCACCCTATAACAACAACTACTGCATAGTAAGTGGAATTTGGAATAAGCTTTTGGATGAAACAAAGGTTTTTGAGGCATTCGAGATGATCTTGTTCTTCAAACTTGGGTTGAGACCAAGATCCTGGACAGAGCCTAATTCTGAATGGACTGAAGAGACCGAGATTCTAGAACAAACTACAGCCCATTAA

mRNA sequence

ATGTCTATCTTAGCTCAAAACAAGTTCCTTCCGAGCTCCCGAACCCATGTTAGCCCATGCAGCTCTCCGATTCCGCGCAGAGTTGTCTATTGCATAGCCAACACCACGGTTAACGTTGTTGCTGCTGGTGCTACCACCACCAATCCGAAGCATGCCAATGGCCAACTAGTCATTGAACGTGAAGTTATATCTCCTACTCCACTTACATTGGTCAATTCCTCCACCTATTATTCTGTTCTTAATGACCCGAGTTTACGATCGACATGGAGTCATCGTGCGTGGGTGGCCAGTGGGTGCACCACGGTGCTCGTCTCTTTGGCAAAATCAATAGTAGGTGCAGCCAGTTCACATATCTGGCTTGAGCCTGCTTTAGCAGCATTGGTAGGCTACATTTTAGCTGATCTTGGATCTGGAGTTTATCATTGGGGTATCGATAACTATGGTGATGCGTCAACTCCAATCTTCGGCACCCAAATAGAAGCATTCCAAGGCCATCACAAGTGGCCATGGACAATCACGAAGCGTCAGTTCGCCAACAATCTGTACGCCTTGGCACGAGCTGTGACCTTCACCGTACTTCCTATAAGCCTGGCATTTGATGATCCGGTTCTACAGGGTTTTGTTGGTGTGTGCTCAGGTTGCATAATGTTTAGCCAACAGTTTCATGCATGGGCTCATGGTAAAAAGAGTGAACTACCGCCACTCGTGGTGGCGATGCAAGATGCTGGCCTGCTTGTGTCACGAATGCAGCATTCTGCACATCATCGTCCACCCTATAACAACAACTACTGCATAGTAAGTGGAATTTGGAATAAGCTTTTGGATGAAACAAAGGTTTTTGAGGCATTCGAGATGATCTTGTTCTTCAAACTTGGGTTGAGACCAAGATCCTGGACAGAGCCTAATTCTGAATGGACTGAAGAGACCGAGATTCTAGAACAAACTACAGCCCATTAA

Coding sequence (CDS)

ATGTCTATCTTAGCTCAAAACAAGTTCCTTCCGAGCTCCCGAACCCATGTTAGCCCATGCAGCTCTCCGATTCCGCGCAGAGTTGTCTATTGCATAGCCAACACCACGGTTAACGTTGTTGCTGCTGGTGCTACCACCACCAATCCGAAGCATGCCAATGGCCAACTAGTCATTGAACGTGAAGTTATATCTCCTACTCCACTTACATTGGTCAATTCCTCCACCTATTATTCTGTTCTTAATGACCCGAGTTTACGATCGACATGGAGTCATCGTGCGTGGGTGGCCAGTGGGTGCACCACGGTGCTCGTCTCTTTGGCAAAATCAATAGTAGGTGCAGCCAGTTCACATATCTGGCTTGAGCCTGCTTTAGCAGCATTGGTAGGCTACATTTTAGCTGATCTTGGATCTGGAGTTTATCATTGGGGTATCGATAACTATGGTGATGCGTCAACTCCAATCTTCGGCACCCAAATAGAAGCATTCCAAGGCCATCACAAGTGGCCATGGACAATCACGAAGCGTCAGTTCGCCAACAATCTGTACGCCTTGGCACGAGCTGTGACCTTCACCGTACTTCCTATAAGCCTGGCATTTGATGATCCGGTTCTACAGGGTTTTGTTGGTGTGTGCTCAGGTTGCATAATGTTTAGCCAACAGTTTCATGCATGGGCTCATGGTAAAAAGAGTGAACTACCGCCACTCGTGGTGGCGATGCAAGATGCTGGCCTGCTTGTGTCACGAATGCAGCATTCTGCACATCATCGTCCACCCTATAACAACAACTACTGCATAGTAAGTGGAATTTGGAATAAGCTTTTGGATGAAACAAAGGTTTTTGAGGCATTCGAGATGATCTTGTTCTTCAAACTTGGGTTGAGACCAAGATCCTGGACAGAGCCTAATTCTGAATGGACTGAAGAGACCGAGATTCTAGAACAAACTACAGCCCATTAA

Protein sequence

MSILAQNKFLPSSRTHVSPCSSPIPRRVVYCIANTTVNVVAAGATTTNPKHANGQLVIEREVISPTPLTLVNSSTYYSVLNDPSLRSTWSHRAWVASGCTTVLVSLAKSIVGAASSHIWLEPALAALVGYILADLGSGVYHWGIDNYGDASTPIFGTQIEAFQGHHKWPWTITKRQFANNLYALARAVTFTVLPISLAFDDPVLQGFVGVCSGCIMFSQQFHAWAHGKKSELPPLVVAMQDAGLLVSRMQHSAHHRPPYNNNYCIVSGIWNKLLDETKVFEAFEMILFFKLGLRPRSWTEPNSEWTEETEILEQTTAH
Homology
[Close]
BLAST of Lsi05G006070 vs. Swiss-Prot
Match: FAD4_ARATH (Fatty acid desaturase 4, chloroplastic OS=Arabidopsis thaliana GN=FAD4 PE=1 SV=1)

HSP 1 Score: 398.3 bits (1022), Expect = 8.0e-110
Identity = 188/294 (63.95%), Postives = 227/294 (77.21%), Query Frame = 1 

Query: 21  SSPIPRRVVYCIANTTVNVVAAG---ATTTNPKHANGQLVIEREVISPTPLTLVNSSTYY 80
           + P P R    +   TVN+  +      +T P+    +LV+E+ + SP PL+        
Sbjct: 37  TKPQPNREKLLVEQRTVNLPLSNDQSLQSTKPRPNREKLVVEQRLASP-PLS-------- 96

Query: 81  SVLNDPSLRSTWSHRAWVASGCTTVLVSLAKSIVGAASSHIWLEPALAALVGYILADLGS 140
              NDP+L+STW+HR WVA+GCTT+ VSLAKS++G   SH+ LEPALA   GYILADLGS
Sbjct: 97  ---NDPTLKSTWTHRLWVAAGCTTLFVSLAKSVIGGFDSHLCLEPALAGYAGYILADLGS 156

Query: 141 GVYHWGIDNYGDASTPIFGTQIEAFQGHHKWPWTITKRQFANNLYALARAVTFTVLPISL 200
           GVYHW IDNYGD STP+ GTQIEAFQGHHKWPWTIT+RQFANNL+ALA+ +TFTVLP+ L
Sbjct: 157 GVYHWAIDNYGDESTPVVGTQIEAFQGHHKWPWTITRRQFANNLHALAQVITFTVLPLDL 216

Query: 201 AFDDPVLQGFVGVCSGCIMFSQQFHAWAHGKKSELPPLVVAMQDAGLLVSRMQHSAHHRP 260
           AF+DPV  GFV   + CI+FSQQFHAWAHG KS+LPPLVVA+QD GLLVSR QH+ HHR 
Sbjct: 217 AFNDPVFHGFVCTFAFCILFSQQFHAWAHGTKSKLPPLVVALQDMGLLVSRRQHAEHHRA 276

Query: 261 PYNNNYCIVSGIWNKLLDETKVFEAFEMILFFKLGLRPRSWTEPNSEWTEETEI 312
           PYNNNYCIVSG WN +LDE+KVFEA EM+ +F+LG+RPRSW+EPNS+W EETEI
Sbjct: 277 PYNNNYCIVSGAWNNVLDESKVFEALEMVFYFQLGVRPRSWSEPNSDWIEETEI 318

[Close]
BLAST of Lsi05G006070 vs. Swiss-Prot
Match: FD4L1_ARATH (Fatty acid desaturase 4-like 1, chloroplastic OS=Arabidopsis thaliana GN=FAD4L1 PE=3 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 2.0e-100
Identity = 167/271 (61.62%), Postives = 207/271 (76.38%), Query Frame = 1 

Query: 40  VAAGATTTNPKHANGQLVIEREVISPTPLTLVNSSTYYSVLNDPSLRSTWSHRAWVASGC 99
           V    TTTNP+  +  LV+E+ +++P PL         S  NDP+L+STW+HR WVA+G 
Sbjct: 28  VTCSVTTTNPQLNHENLVVEKRLVNP-PL---------SKNNDPTLQSTWTHRLWVAAGS 87

Query: 100 TTVLVSLAKSIVGAASSHIWLEPALAALVGYILADLGSGVYHWGIDNYGDASTPIFGTQI 159
           TT+  S AKSI+G   SH+WL+PALA   GY+ ADLGSGVYHW IDNYG ASTPI G Q+
Sbjct: 88  TTIFASFAKSIIGGFGSHLWLQPALACYAGYVFADLGSGVYHWAIDNYGGASTPIVGAQL 147

Query: 160 EAFQGHHKWPWTITKRQFANNLYALARAVTFTVLPISLAFDDPVLQGFVGVCSGCIMFSQ 219
           EA QGHHK+PWTITKRQFANN Y +ARA+TF VLP++LA ++P+   FV   + CI+ SQ
Sbjct: 148 EASQGHHKYPWTITKRQFANNSYTIARAITFIVLPLNLAINNPLFHSFVSTFAFCILLSQ 207

Query: 220 QFHAWAHGKKSELPPLVVAMQDAGLLVSRMQHSAHHRPPYNNNYCIVSGIWNKLLDETKV 279
           QFHAWAHG KS+LPPLV+A+QD GLLVSR  H  HH+ PYN+NYC+VSG WNK+LDE+ +
Sbjct: 208 QFHAWAHGTKSKLPPLVMALQDMGLLVSRKDHPGHHQAPYNSNYCVVSGAWNKVLDESNL 267

Query: 280 FEAFEMILFFKLGLRPRSWTEPNSEWTEETE 311
           F+A EM LFF+ G+RP SW EPNS+WTEETE
Sbjct: 268 FKALEMALFFQFGVRPNSWNEPNSDWTEETE 288

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BLAST of Lsi05G006070 vs. Swiss-Prot
Match: FD4L2_ARATH (Fatty acid desaturase 4-like 2, chloroplastic OS=Arabidopsis thaliana GN=FAD4L2 PE=2 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 1.1e-95
Identity = 162/260 (62.31%), Postives = 199/260 (76.54%), Query Frame = 1 

Query: 45  TTTNPKHANGQLVIEREVISPTPLTLVNSSTYYSVLNDPSLRSTWSHRAWVASGCTTVLV 104
           T + P H   +LV+E+ +++P PL+           NDP+L+STW+HR WVA+GCTTV V
Sbjct: 33  TNSQPNHEM-KLVVEQRLVNP-PLS-----------NDPTLQSTWTHRLWVAAGCTTVFV 92

Query: 105 SLAKSIVGAASSHIWLEPALAALVGYILADLGSGVYHWGIDNYGDASTPIFGTQIEAFQG 164
           S +KSI+GA  SH+WLEP+LA   GYILADLGSGVYHW  DNYGD STP+ G  IE  Q 
Sbjct: 93  SFSKSIIGAFGSHLWLEPSLAGFAGYILADLGSGVYHWATDNYGDESTPLVGIHIEDSQD 152

Query: 165 HHKWPWTITKRQFANNLYALARAVTFTVLPISLAFDDPVLQGFVGVCSGCIMFSQQFHAW 224
           HHK PWTITKRQFANNL+ +AR  T  VLP+ LAFDD V+ GFV + + C++F Q FHAW
Sbjct: 153 HHKCPWTITKRQFANNLHFMARGTTLIVLPLDLAFDDHVVHGFVSMFAFCVLFCQLFHAW 212

Query: 225 AHGKKSELPPLVVAMQDAGLLVSRMQHSAHHRPPYNNNYCIVSGIWNKLLDETKVFEAFE 284
           AHG KS+LPPLVV +QD GLLVSR+ H  HHR PYNNNYC+VSG+WNK+LDE+ VF+A E
Sbjct: 213 AHGTKSKLPPLVVGLQDIGLLVSRIHHMNHHRAPYNNNYCVVSGVWNKVLDESNVFKAME 272

Query: 285 MILFFKLGLRPRSWTEPNSE 305
           M+L+ +LG+RPRSWTEPN E
Sbjct: 273 MVLYIQLGVRPRSWTEPNYE 279

[Close]
BLAST of Lsi05G006070 vs. Swiss-Prot
Match: YL630_MIMIV (Uncharacterized protein L630 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L630 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.8e-11
Identity = 46/179 (25.70%), Postives = 78/179 (43.58%), Query Frame = 1 

Query: 120 LEPALAALVGYILADLGSGVYHWGIDNYGDASTPIFG-TQIEAFQGHHKWPWTITKRQFA 179
           ++  +  ++GY+L+D   G+YHW  D Y    TPI G T I   + HH  P  + +    
Sbjct: 6   IDKFIQIVLGYLLSDFIMGIYHWIKDTYFSPFTPIIGKTFIWGSRLHHVRPRYVLEFTDK 65

Query: 180 NNLYALARAVTFTVLPISLAFDDPVLQGFVGVCSGCIMFSQQFHAWAHGKKSELPPLVVA 239
           + +   A+     + P+   F    L  F+      I  +   H + H    E P     
Sbjct: 66  DLIIDSAKWTLSWIGPLFFWFG---LTPFLVTMFIMISLNDVIHKYTHEIDHERPMWATI 125

Query: 240 MQDAGLLVSRMQHSAHHRPPYNNNYCIVSGIWNKLLDETKVFEAFEMILFFKLGLRPRS 298
           +Q  G   S  +H  HH  P+  NYC V+   N  L++  ++   E  + +  G++PR+
Sbjct: 126 LQRIGFFQSHDEHHLHHIAPHEINYCPVTPYVNIWLEKINLWRKLESFVEYLTGVKPRA 181

[Close]
BLAST of Lsi05G006070 vs. TrEMBL
Match: A0A0A0L6B9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G077710 PE=4 SV=1)

HSP 1 Score: 601.3 bits (1549), Expect = 6.9e-169
Identity = 290/318 (91.19%), Postives = 302/318 (94.97%), Query Frame = 1 

Query: 1   MSILAQNKFLPSSRTHVSPCSSPIPRRVVYCIANTTVNVVAAGATTTNPKHANGQLVIER 60
           MSILAQNKFL SSR+HV+PCS+PIPRRVVYCIANTTVN VA     T+PKHA+GQLVIER
Sbjct: 1   MSILAQNKFLLSSRSHVNPCSTPIPRRVVYCIANTTVNGVA-----TSPKHADGQLVIER 60

Query: 61  EVISPTPLTLVNSSTYYSVLNDPSLRSTWSHRAWVASGCTTVLVSLAKSIVGAASSHIWL 120
           EVISPTPLT VNSSTYYSVLNDPSLRSTWSHRAWVA GCTTVL+SLAKSIVGAASSHIWL
Sbjct: 61  EVISPTPLTFVNSSTYYSVLNDPSLRSTWSHRAWVAGGCTTVLISLAKSIVGAASSHIWL 120

Query: 121 EPALAALVGYILADLGSGVYHWGIDNYGDASTPIFGTQIEAFQGHHKWPWTITKRQFANN 180
           EPALAALVGYILADLGSGVYHWGIDNYGDASTPIFGTQIEAFQGHHKWPWTITKRQFANN
Sbjct: 121 EPALAALVGYILADLGSGVYHWGIDNYGDASTPIFGTQIEAFQGHHKWPWTITKRQFANN 180

Query: 181 LYALARAVTFTVLPISLAFDDPVLQGFVGVCSGCIMFSQQFHAWAHGKKSELPPLVVAMQ 240
           LYALARAVTF VLP+SLA DDP+L GFVG+CSGCIMFSQQFHAWAH KKSELPPLVVAMQ
Sbjct: 181 LYALARAVTFAVLPVSLAIDDPILHGFVGMCSGCIMFSQQFHAWAHSKKSELPPLVVAMQ 240

Query: 241 DAGLLVSRMQHSAHHRPPYNNNYCIVSGIWNKLLDETKVFEAFEMILFFKLGLRPRSWTE 300
           +AGLLVSR QHS HHRPPYNNNYCIVSGIWNKLLDETK+FEA EMIL+FKLGLRPRSWTE
Sbjct: 241 NAGLLVSRTQHSTHHRPPYNNNYCIVSGIWNKLLDETKLFEALEMILYFKLGLRPRSWTE 300

Query: 301 PNSEWTEETEILEQTTAH 319
           PNSEWTEETEILEQTTAH
Sbjct: 301 PNSEWTEETEILEQTTAH 313

[Close]
BLAST of Lsi05G006070 vs. TrEMBL
Match: W9QQD6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_017818 PE=4 SV=1)

HSP 1 Score: 460.3 bits (1183), Expect = 1.9e-126
Identity = 225/316 (71.20%), Postives = 249/316 (78.80%), Query Frame = 1 

Query: 1   MSILAQNKFLPSSRTHVSPCSSPIPRRVVYCIANTTVNVVAAGATTTNPKHANGQLVIER 60
           MSILAQNK    S+ H      P     V+C A TT          T PK    +LV+E 
Sbjct: 1   MSILAQNKLPLGSQRHFHKYHVPSIHTRVHCSATTT----------TKPKTEPNRLVVEP 60

Query: 61  EVISPTPLTLVNSSTYYSVLNDPSLRSTWSHRAWVASGCTTVLVSLAKSIVGAASSHIWL 120
           +V+ PTP    NS+    VLNDPSL STWSHRAWVASGCTTVL+SLAKS+ GAA+SHIWL
Sbjct: 61  QVVLPTPSLSTNSAR--PVLNDPSLLSTWSHRAWVASGCTTVLISLAKSLAGAANSHIWL 120

Query: 121 EPALAALVGYILADLGSGVYHWGIDNYGDASTPIFGTQIEAFQGHHKWPWTITKRQFANN 180
           EP LA LVGYILADLGSGVYHWGIDNYGDASTP FGTQIEAFQGHHKWPWTIT+RQFANN
Sbjct: 121 EPVLAGLVGYILADLGSGVYHWGIDNYGDASTPSFGTQIEAFQGHHKWPWTITRRQFANN 180

Query: 181 LYALARAVTFTVLPISLAFDDPVLQGFVGVCSGCIMFSQQFHAWAHGKKSELPPLVVAMQ 240
           L+ALARAVTFTVLPI L  +DP++ GFV VCSGCIMFSQQFHAWAHG KS LPPLVVA+Q
Sbjct: 181 LHALARAVTFTVLPIDLLCNDPIIHGFVAVCSGCIMFSQQFHAWAHGTKSRLPPLVVALQ 240

Query: 241 DAGLLVSRMQHSAHHRPPYNNNYCIVSGIWNKLLDETKVFEAFEMILFFKLGLRPRSWTE 300
           D  +LVSR QH+AHHRPPYNNNYCIVSG+WN+ LD+  VFEA EMILFFKLG+RPRSW+E
Sbjct: 241 DLSILVSRSQHAAHHRPPYNNNYCIVSGVWNEFLDKQMVFEALEMILFFKLGVRPRSWSE 300

Query: 301 PNSEWTEETEILEQTT 317
           PNS+WTEE E   Q T
Sbjct: 301 PNSDWTEEAETPSQLT 304

[Close]
BLAST of Lsi05G006070 vs. TrEMBL
Match: M5WU70_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009008mg PE=4 SV=1)

HSP 1 Score: 438.0 bits (1125), Expect = 1.0e-119
Identity = 220/319 (68.97%), Postives = 244/319 (76.49%), Query Frame = 1 

Query: 1   MSILAQNKFLPSSRTHVSPCSSPIPRRVVYCIANTTVNVVAAGATTTNPKHANGQLVIER 60
           MSIL Q K  PS +  +    SPI R  V+C A TT        T  NP     +LV+E 
Sbjct: 1   MSILTQAKLHPSLQHQLHTSHSPILRTAVHCSAATT--------TKPNPNPNPKKLVLEP 60

Query: 61  EV--ISPTPLTLVNSSTYYSVLNDPSLRSTWSHRAWVASGCTTVLVSLAKSIVGAASSHI 120
            +  + P P  L N +     LNDPSL STWSHRAWVASGCTTVLVSLAKSI  AA+SH+
Sbjct: 61  PIRRLEPPPPLLPNPTR--PQLNDPSLLSTWSHRAWVASGCTTVLVSLAKSITCAANSHM 120

Query: 121 WLEPALAALVGYILADLGSGVYHWGIDNYGDASTPIFGTQIEAFQGHHKWPWTITKRQFA 180
           W EP LA LVGY+LADLGSGVYHWGIDNYG ASTPIFG QIEAFQGHHKWPWTIT+R+FA
Sbjct: 121 WAEPILAGLVGYVLADLGSGVYHWGIDNYGGASTPIFGAQIEAFQGHHKWPWTITRREFA 180

Query: 181 NNLYALARAVTFTVLPISLAFDDPVLQGFVGVCSGCIMFSQQFHAWAHGKKSELPPLVVA 240
           NNL+ALAR VTF VLPI L  DDP++ GFV VCSG IMFSQQFHAWAHG KS LPPLVVA
Sbjct: 181 NNLHALARVVTFIVLPIDLVCDDPIVNGFVAVCSGSIMFSQQFHAWAHGTKSRLPPLVVA 240

Query: 241 MQDAGLLVSRMQHSAHHRPPYNNNYCIVSGIWNKLLDETKVFEAFEMILFFKLGLRPRSW 300
           +QD G+LVSR QHSAHHR PYNNNYCIVSG+WN+ LD+ KVFEA EMILFFK G+RPRSW
Sbjct: 241 LQDFGVLVSRSQHSAHHREPYNNNYCIVSGVWNEFLDKHKVFEALEMILFFKQGVRPRSW 300

Query: 301 TEPNSEWTEETEILEQTTA 318
           +EP+SEWTEETE   Q TA
Sbjct: 301 SEPSSEWTEETETTSQLTA 309

[Close]
BLAST of Lsi05G006070 vs. TrEMBL
Match: U5GX40_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s44870g PE=4 SV=1)

HSP 1 Score: 430.6 bits (1106), Expect = 1.6e-117
Identity = 209/314 (66.56%), Postives = 238/314 (75.80%), Query Frame = 1 

Query: 1   MSILAQNKFLPSSRTHVSPCSSPIPRRVVYCIANTTVNVVAAGATTTNPKHANGQLVIER 60
           MSIL Q+    +     SP  +P  R+ + C A TT          T PK +  QL  E 
Sbjct: 1   MSILPQHNHCLTR----SPAHNPWHRKRIICSATTT---------PTKPKSSPNQLTFEP 60

Query: 61  EVISPTPLTLVNSSTYYSVLNDPSLRSTWSHRAWVASGCTTVLVSLAKSIVGAASSHIWL 120
           + +  TP  LV S +   VLNDPSL+STWSHR WVA+GCTTVLVSLAK+I GA  SHIWL
Sbjct: 61  QFV--TPPNLVTSISTPPVLNDPSLQSTWSHRTWVATGCTTVLVSLAKAIAGAGHSHIWL 120

Query: 121 EPALAALVGYILADLGSGVYHWGIDNYGDASTPIFGTQIEAFQGHHKWPWTITKRQFANN 180
           EP LA  +GYILADLGSGVYHWGIDNYGD STPIFG QIEAFQGHHKWPWTIT+RQFANN
Sbjct: 121 EPMLAGYIGYILADLGSGVYHWGIDNYGDGSTPIFGNQIEAFQGHHKWPWTITRRQFANN 180

Query: 181 LYALARAVTFTVLPISLAFDDPVLQGFVGVCSGCIMFSQQFHAWAHGKKSELPPLVVAMQ 240
           L+ALAR V F VLP+ L  +DP +  FVGVCSGCIMFSQQFHAWAHG KS+LPP+VVA+Q
Sbjct: 181 LHALARTVAFFVLPVDLVCNDPTVNAFVGVCSGCIMFSQQFHAWAHGTKSKLPPIVVALQ 240

Query: 241 DAGLLVSRMQHSAHHRPPYNNNYCIVSGIWNKLLDETKVFEAFEMILFFKLGLRPRSWTE 300
           D GLLVSR QH AHHR PYNNNYCIVSG+WN+ LD+ KVFEA EM L+FKLG+RPRSW+E
Sbjct: 241 DVGLLVSRSQHGAHHRQPYNNNYCIVSGVWNEFLDKNKVFEALEMALYFKLGVRPRSWSE 299

Query: 301 PNSEWTEETEILEQ 315
           P ++WTEETE   Q
Sbjct: 301 PTTDWTEETESASQ 299

[Close]
BLAST of Lsi05G006070 vs. TrEMBL
Match: F6HEN8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0090g00120 PE=4 SV=1)

HSP 1 Score: 425.2 bits (1092), Expect = 6.8e-116
Identity = 198/280 (70.71%), Postives = 224/280 (80.00%), Query Frame = 1 

Query: 39  VVAAGATTTNPKHANGQLVIEREVISPTPLTLVNSSTYYSVLNDPSLRSTWSHRAWVASG 98
           V  +  +T   KH   QLVIE   ++PTP+           + DP L STW HRAWVASG
Sbjct: 31  VHCSATSTAKAKHKADQLVIEPRPLTPTPIAKTPDRPS---IKDPDLLSTWPHRAWVASG 90

Query: 99  CTTVLVSLAKSIVGAASSHIWLEPALAALVGYILADLGSGVYHWGIDNYGDASTPIFGTQ 158
           CTTVL+SL K   G+A SH+WLEP LA L+GY+LADLGSGVYHWGIDNYGDASTP+FG+Q
Sbjct: 91  CTTVLISLLKCATGSAHSHMWLEPVLAGLIGYVLADLGSGVYHWGIDNYGDASTPVFGSQ 150

Query: 159 IEAFQGHHKWPWTITKRQFANNLYALARAVTFTVLPISLAFDDPVLQGFVGVCSGCIMFS 218
           IEAFQGHHKWPWTI +RQFANNL+ALARAVTFTVLP+ L F+DPV+ GFV VCSGCIMFS
Sbjct: 151 IEAFQGHHKWPWTIIRRQFANNLHALARAVTFTVLPLDLVFNDPVVHGFVWVCSGCIMFS 210

Query: 219 QQFHAWAHGKKSELPPLVVAMQDAGLLVSRMQHSAHHRPPYNNNYCIVSGIWNKLLDETK 278
           QQFHAWAHG KS LPPLVVA+QDAGLLVSR QH+AHH  PYNNNYCIVSG+WN+ LDE K
Sbjct: 211 QQFHAWAHGTKSRLPPLVVALQDAGLLVSRSQHAAHHHAPYNNNYCIVSGVWNEFLDENK 270

Query: 279 VFEAFEMILFFKLGLRPRSWTEPNSEWTEETEILEQTTAH 319
           VFEA EMILFF+LG+RPRSW+EPN  W EE E   QTT +
Sbjct: 271 VFEALEMILFFQLGVRPRSWSEPNFGWIEEIETHSQTTVY 307

[Close]
BLAST of Lsi05G006070 vs. TAIR10
Match: AT4G27030.1 (AT4G27030.1 fatty acid desaturase A)

HSP 1 Score: 398.3 bits (1022), Expect = 4.5e-111
Identity = 188/294 (63.95%), Postives = 227/294 (77.21%), Query Frame = 1 

Query: 21  SSPIPRRVVYCIANTTVNVVAAG---ATTTNPKHANGQLVIEREVISPTPLTLVNSSTYY 80
           + P P R    +   TVN+  +      +T P+    +LV+E+ + SP PL+        
Sbjct: 37  TKPQPNREKLLVEQRTVNLPLSNDQSLQSTKPRPNREKLVVEQRLASP-PLS-------- 96

Query: 81  SVLNDPSLRSTWSHRAWVASGCTTVLVSLAKSIVGAASSHIWLEPALAALVGYILADLGS 140
              NDP+L+STW+HR WVA+GCTT+ VSLAKS++G   SH+ LEPALA   GYILADLGS
Sbjct: 97  ---NDPTLKSTWTHRLWVAAGCTTLFVSLAKSVIGGFDSHLCLEPALAGYAGYILADLGS 156

Query: 141 GVYHWGIDNYGDASTPIFGTQIEAFQGHHKWPWTITKRQFANNLYALARAVTFTVLPISL 200
           GVYHW IDNYGD STP+ GTQIEAFQGHHKWPWTIT+RQFANNL+ALA+ +TFTVLP+ L
Sbjct: 157 GVYHWAIDNYGDESTPVVGTQIEAFQGHHKWPWTITRRQFANNLHALAQVITFTVLPLDL 216

Query: 201 AFDDPVLQGFVGVCSGCIMFSQQFHAWAHGKKSELPPLVVAMQDAGLLVSRMQHSAHHRP 260
           AF+DPV  GFV   + CI+FSQQFHAWAHG KS+LPPLVVA+QD GLLVSR QH+ HHR 
Sbjct: 217 AFNDPVFHGFVCTFAFCILFSQQFHAWAHGTKSKLPPLVVALQDMGLLVSRRQHAEHHRA 276

Query: 261 PYNNNYCIVSGIWNKLLDETKVFEAFEMILFFKLGLRPRSWTEPNSEWTEETEI 312
           PYNNNYCIVSG WN +LDE+KVFEA EM+ +F+LG+RPRSW+EPNS+W EETEI
Sbjct: 277 PYNNNYCIVSGAWNNVLDESKVFEALEMVFYFQLGVRPRSWSEPNSDWIEETEI 318

[Close]
BLAST of Lsi05G006070 vs. TAIR10
Match: AT1G62190.1 (AT1G62190.1 Kua-ubiquitin conjugating enzyme hybrid localisation domain)

HSP 1 Score: 367.1 bits (941), Expect = 1.1e-101
Identity = 167/271 (61.62%), Postives = 207/271 (76.38%), Query Frame = 1 

Query: 40  VAAGATTTNPKHANGQLVIEREVISPTPLTLVNSSTYYSVLNDPSLRSTWSHRAWVASGC 99
           V    TTTNP+  +  LV+E+ +++P PL         S  NDP+L+STW+HR WVA+G 
Sbjct: 28  VTCSVTTTNPQLNHENLVVEKRLVNP-PL---------SKNNDPTLQSTWTHRLWVAAGS 87

Query: 100 TTVLVSLAKSIVGAASSHIWLEPALAALVGYILADLGSGVYHWGIDNYGDASTPIFGTQI 159
           TT+  S AKSI+G   SH+WL+PALA   GY+ ADLGSGVYHW IDNYG ASTPI G Q+
Sbjct: 88  TTIFASFAKSIIGGFGSHLWLQPALACYAGYVFADLGSGVYHWAIDNYGGASTPIVGAQL 147

Query: 160 EAFQGHHKWPWTITKRQFANNLYALARAVTFTVLPISLAFDDPVLQGFVGVCSGCIMFSQ 219
           EA QGHHK+PWTITKRQFANN Y +ARA+TF VLP++LA ++P+   FV   + CI+ SQ
Sbjct: 148 EASQGHHKYPWTITKRQFANNSYTIARAITFIVLPLNLAINNPLFHSFVSTFAFCILLSQ 207

Query: 220 QFHAWAHGKKSELPPLVVAMQDAGLLVSRMQHSAHHRPPYNNNYCIVSGIWNKLLDETKV 279
           QFHAWAHG KS+LPPLV+A+QD GLLVSR  H  HH+ PYN+NYC+VSG WNK+LDE+ +
Sbjct: 208 QFHAWAHGTKSKLPPLVMALQDMGLLVSRKDHPGHHQAPYNSNYCVVSGAWNKVLDESNL 267

Query: 280 FEAFEMILFFKLGLRPRSWTEPNSEWTEETE 311
           F+A EM LFF+ G+RP SW EPNS+WTEETE
Sbjct: 268 FKALEMALFFQFGVRPNSWNEPNSDWTEETE 288

[Close]
BLAST of Lsi05G006070 vs. TAIR10
Match: AT2G22890.1 (AT2G22890.1 Kua-ubiquitin conjugating enzyme hybrid localisation domain)

HSP 1 Score: 351.3 bits (900), Expect = 6.3e-97
Identity = 162/260 (62.31%), Postives = 199/260 (76.54%), Query Frame = 1 

Query: 45  TTTNPKHANGQLVIEREVISPTPLTLVNSSTYYSVLNDPSLRSTWSHRAWVASGCTTVLV 104
           T + P H   +LV+E+ +++P PL+           NDP+L+STW+HR WVA+GCTTV V
Sbjct: 33  TNSQPNHEM-KLVVEQRLVNP-PLS-----------NDPTLQSTWTHRLWVAAGCTTVFV 92

Query: 105 SLAKSIVGAASSHIWLEPALAALVGYILADLGSGVYHWGIDNYGDASTPIFGTQIEAFQG 164
           S +KSI+GA  SH+WLEP+LA   GYILADLGSGVYHW  DNYGD STP+ G  IE  Q 
Sbjct: 93  SFSKSIIGAFGSHLWLEPSLAGFAGYILADLGSGVYHWATDNYGDESTPLVGIHIEDSQD 152

Query: 165 HHKWPWTITKRQFANNLYALARAVTFTVLPISLAFDDPVLQGFVGVCSGCIMFSQQFHAW 224
           HHK PWTITKRQFANNL+ +AR  T  VLP+ LAFDD V+ GFV + + C++F Q FHAW
Sbjct: 153 HHKCPWTITKRQFANNLHFMARGTTLIVLPLDLAFDDHVVHGFVSMFAFCVLFCQLFHAW 212

Query: 225 AHGKKSELPPLVVAMQDAGLLVSRMQHSAHHRPPYNNNYCIVSGIWNKLLDETKVFEAFE 284
           AHG KS+LPPLVV +QD GLLVSR+ H  HHR PYNNNYC+VSG+WNK+LDE+ VF+A E
Sbjct: 213 AHGTKSKLPPLVVGLQDIGLLVSRIHHMNHHRAPYNNNYCVVSGVWNKVLDESNVFKAME 272

Query: 285 MILFFKLGLRPRSWTEPNSE 305
           M+L+ +LG+RPRSWTEPN E
Sbjct: 273 MVLYIQLGVRPRSWTEPNYE 279

[Close]
BLAST of Lsi05G006070 vs. NCBI nr
Match: gi|449470467|ref|XP_004152938.1| (PREDICTED: fatty acid desaturase 4, chloroplastic [Cucumis sativus])

HSP 1 Score: 601.3 bits (1549), Expect = 9.9e-169
Identity = 290/318 (91.19%), Postives = 302/318 (94.97%), Query Frame = 1 

Query: 1   MSILAQNKFLPSSRTHVSPCSSPIPRRVVYCIANTTVNVVAAGATTTNPKHANGQLVIER 60
           MSILAQNKFL SSR+HV+PCS+PIPRRVVYCIANTTVN VA     T+PKHA+GQLVIER
Sbjct: 1   MSILAQNKFLLSSRSHVNPCSTPIPRRVVYCIANTTVNGVA-----TSPKHADGQLVIER 60

Query: 61  EVISPTPLTLVNSSTYYSVLNDPSLRSTWSHRAWVASGCTTVLVSLAKSIVGAASSHIWL 120
           EVISPTPLT VNSSTYYSVLNDPSLRSTWSHRAWVA GCTTVL+SLAKSIVGAASSHIWL
Sbjct: 61  EVISPTPLTFVNSSTYYSVLNDPSLRSTWSHRAWVAGGCTTVLISLAKSIVGAASSHIWL 120

Query: 121 EPALAALVGYILADLGSGVYHWGIDNYGDASTPIFGTQIEAFQGHHKWPWTITKRQFANN 180
           EPALAALVGYILADLGSGVYHWGIDNYGDASTPIFGTQIEAFQGHHKWPWTITKRQFANN
Sbjct: 121 EPALAALVGYILADLGSGVYHWGIDNYGDASTPIFGTQIEAFQGHHKWPWTITKRQFANN 180

Query: 181 LYALARAVTFTVLPISLAFDDPVLQGFVGVCSGCIMFSQQFHAWAHGKKSELPPLVVAMQ 240
           LYALARAVTF VLP+SLA DDP+L GFVG+CSGCIMFSQQFHAWAH KKSELPPLVVAMQ
Sbjct: 181 LYALARAVTFAVLPVSLAIDDPILHGFVGMCSGCIMFSQQFHAWAHSKKSELPPLVVAMQ 240

Query: 241 DAGLLVSRMQHSAHHRPPYNNNYCIVSGIWNKLLDETKVFEAFEMILFFKLGLRPRSWTE 300
           +AGLLVSR QHS HHRPPYNNNYCIVSGIWNKLLDETK+FEA EMIL+FKLGLRPRSWTE
Sbjct: 241 NAGLLVSRTQHSTHHRPPYNNNYCIVSGIWNKLLDETKLFEALEMILYFKLGLRPRSWTE 300

Query: 301 PNSEWTEETEILEQTTAH 319
           PNSEWTEETEILEQTTAH
Sbjct: 301 PNSEWTEETEILEQTTAH 313

[Close]
BLAST of Lsi05G006070 vs. NCBI nr
Match: gi|659126922|ref|XP_008463431.1| (PREDICTED: transmembrane protein 189 [Cucumis melo])

HSP 1 Score: 589.0 bits (1517), Expect = 5.1e-165
Identity = 284/318 (89.31%), Postives = 297/318 (93.40%), Query Frame = 1 

Query: 1   MSILAQNKFLPSSRTHVSPCSSPIPRRVVYCIANTTVNVVAAGATTTNPKHANGQLVIER 60
           MSILAQNKFL SSR+HV+PCS+P PRRVVYCIANTTVN V      T+ KH +GQLVIER
Sbjct: 1   MSILAQNKFLLSSRSHVNPCSTPTPRRVVYCIANTTVNGVG-----TSSKHGDGQLVIER 60

Query: 61  EVISPTPLTLVNSSTYYSVLNDPSLRSTWSHRAWVASGCTTVLVSLAKSIVGAASSHIWL 120
           EVISP+PLT VNSSTYYSVLNDPSLRSTWSHRAWVA GCTTVL+SLAKSIVGAASS IWL
Sbjct: 61  EVISPSPLTSVNSSTYYSVLNDPSLRSTWSHRAWVAGGCTTVLISLAKSIVGAASSRIWL 120

Query: 121 EPALAALVGYILADLGSGVYHWGIDNYGDASTPIFGTQIEAFQGHHKWPWTITKRQFANN 180
           EPALAALVGYILADLGSG+YHWGIDNYG ASTPIFGTQIEAFQGHHKWPWTITKRQFANN
Sbjct: 121 EPALAALVGYILADLGSGIYHWGIDNYGGASTPIFGTQIEAFQGHHKWPWTITKRQFANN 180

Query: 181 LYALARAVTFTVLPISLAFDDPVLQGFVGVCSGCIMFSQQFHAWAHGKKSELPPLVVAMQ 240
           LYALARAVTF VLP+SLAFDDP L GFVGVCSGCIMFSQQFHAWAHGKKSE+PPLVVAMQ
Sbjct: 181 LYALARAVTFAVLPVSLAFDDPTLHGFVGVCSGCIMFSQQFHAWAHGKKSEIPPLVVAMQ 240

Query: 241 DAGLLVSRMQHSAHHRPPYNNNYCIVSGIWNKLLDETKVFEAFEMILFFKLGLRPRSWTE 300
           DAGLLVSR QH+ HHRPPYNNNYCIVSGIWN+LLDETKVFEA EMIL+FKLGLRPRSWTE
Sbjct: 241 DAGLLVSRTQHATHHRPPYNNNYCIVSGIWNQLLDETKVFEALEMILYFKLGLRPRSWTE 300

Query: 301 PNSEWTEETEILEQTTAH 319
           PNSEWTEETEILEQTTAH
Sbjct: 301 PNSEWTEETEILEQTTAH 313

[Close]
BLAST of Lsi05G006070 vs. NCBI nr
Match: gi|703083108|ref|XP_010092130.1| (hypothetical protein L484_017818 [Morus notabilis])

HSP 1 Score: 460.3 bits (1183), Expect = 2.7e-126
Identity = 225/316 (71.20%), Postives = 249/316 (78.80%), Query Frame = 1 

Query: 1   MSILAQNKFLPSSRTHVSPCSSPIPRRVVYCIANTTVNVVAAGATTTNPKHANGQLVIER 60
           MSILAQNK    S+ H      P     V+C A TT          T PK    +LV+E 
Sbjct: 1   MSILAQNKLPLGSQRHFHKYHVPSIHTRVHCSATTT----------TKPKTEPNRLVVEP 60

Query: 61  EVISPTPLTLVNSSTYYSVLNDPSLRSTWSHRAWVASGCTTVLVSLAKSIVGAASSHIWL 120
           +V+ PTP    NS+    VLNDPSL STWSHRAWVASGCTTVL+SLAKS+ GAA+SHIWL
Sbjct: 61  QVVLPTPSLSTNSAR--PVLNDPSLLSTWSHRAWVASGCTTVLISLAKSLAGAANSHIWL 120

Query: 121 EPALAALVGYILADLGSGVYHWGIDNYGDASTPIFGTQIEAFQGHHKWPWTITKRQFANN 180
           EP LA LVGYILADLGSGVYHWGIDNYGDASTP FGTQIEAFQGHHKWPWTIT+RQFANN
Sbjct: 121 EPVLAGLVGYILADLGSGVYHWGIDNYGDASTPSFGTQIEAFQGHHKWPWTITRRQFANN 180

Query: 181 LYALARAVTFTVLPISLAFDDPVLQGFVGVCSGCIMFSQQFHAWAHGKKSELPPLVVAMQ 240
           L+ALARAVTFTVLPI L  +DP++ GFV VCSGCIMFSQQFHAWAHG KS LPPLVVA+Q
Sbjct: 181 LHALARAVTFTVLPIDLLCNDPIIHGFVAVCSGCIMFSQQFHAWAHGTKSRLPPLVVALQ 240

Query: 241 DAGLLVSRMQHSAHHRPPYNNNYCIVSGIWNKLLDETKVFEAFEMILFFKLGLRPRSWTE 300
           D  +LVSR QH+AHHRPPYNNNYCIVSG+WN+ LD+  VFEA EMILFFKLG+RPRSW+E
Sbjct: 241 DLSILVSRSQHAAHHRPPYNNNYCIVSGVWNEFLDKQMVFEALEMILFFKLGVRPRSWSE 300

Query: 301 PNSEWTEETEILEQTT 317
           PNS+WTEE E   Q T
Sbjct: 301 PNSDWTEEAETPSQLT 304

[Close]
BLAST of Lsi05G006070 vs. NCBI nr
Match: gi|470119426|ref|XP_004295815.1| (PREDICTED: fatty acid desaturase 4, chloroplastic [Fragaria vesca subsp. vesca])

HSP 1 Score: 451.1 bits (1159), Expect = 1.7e-123
Identity = 218/315 (69.21%), Postives = 245/315 (77.78%), Query Frame = 1 

Query: 1   MSILAQNKFLPSSRTHVSP-CSSPIPRRVVYCIANTTVNVVAAGATTTNPKHANGQLVIE 60
           MSI  Q K LPS + HV   C  P+ R  V+C             TTT PK    +LVIE
Sbjct: 1   MSIFTQTKLLPSPKHHVHTLCHPPVLRTTVHC-----------SITTTKPKPVPEKLVIE 60

Query: 61  REVISPTPLTLVNSSTYYSVLNDPSLRSTWSHRAWVASGCTTVLVSLAKSIVGAASSHIW 120
              +   P    +      +LNDPSL STWSHRAWVASGCTTVL+SLAKS+VGAA+SHIW
Sbjct: 61  PPWL---PQLEPSPDIARPMLNDPSLLSTWSHRAWVASGCTTVLISLAKSVVGAANSHIW 120

Query: 121 LEPALAALVGYILADLGSGVYHWGIDNYGDASTPIFGTQIEAFQGHHKWPWTITKRQFAN 180
            +P LA LVGY+LADLGSGVYHWGIDNYG ASTPIFG QIEAFQGHHKWPWTITKRQFAN
Sbjct: 121 ADPILAGLVGYVLADLGSGVYHWGIDNYGGASTPIFGAQIEAFQGHHKWPWTITKRQFAN 180

Query: 181 NLYALARAVTFTVLPISLAFDDPVLQGFVGVCSGCIMFSQQFHAWAHGKKSELPPLVVAM 240
           NL+ALAR +TFTVLP+ LAFDDP+L GFV VCSGCIMFSQQFHAWAHG KS LPPLVVA+
Sbjct: 181 NLHALARVITFTVLPLDLAFDDPILHGFVAVCSGCIMFSQQFHAWAHGTKSRLPPLVVAL 240

Query: 241 QDAGLLVSRMQHSAHHRPPYNNNYCIVSGIWNKLLDETKVFEAFEMILFFKLGLRPRSWT 300
           QD+G+L+SR QHSAHHR PYNNNYCIVSG+WN+ LD+ KVFEA EMILFFK GLRPRSW+
Sbjct: 241 QDSGILISRSQHSAHHRQPYNNNYCIVSGVWNEFLDKQKVFEALEMILFFKQGLRPRSWS 300

Query: 301 EPNSEWTEETEILEQ 315
           EP+SEW EE E + +
Sbjct: 301 EPSSEWIEEAETISE 301

[Close]
BLAST of Lsi05G006070 vs. NCBI nr
Match: gi|694316075|ref|XP_009378554.1| (PREDICTED: fatty acid desaturase 4, chloroplastic-like [Pyrus x bretschneideri])

HSP 1 Score: 440.7 bits (1132), Expect = 2.2e-120
Identity = 216/314 (68.79%), Postives = 242/314 (77.07%), Query Frame = 1 

Query: 1   MSILAQNKFLPSSRTHVSPCSSPIPRRVVYCIANTTVNVVAAGATTTNPKHANGQLVIER 60
           M+IL Q KFLPS    +    SPI R  V+C A+TT           NP      L    
Sbjct: 1   MAILTQTKFLPSPINQLHTSHSPILRTSVHCSASTT---------KANPAPEKLVLKPPL 60

Query: 61  EVISPTPLTLVNSSTYYSVLNDPSLRSTWSHRAWVASGCTTVLVSLAKSIVGAASSHIWL 120
           +++ P+P  L +++      NDPSL STWSHRAWVASGCTTVLVSLAKS+  AA SHIWL
Sbjct: 61  QLLEPSPALLTDTTIRPPQPNDPSLLSTWSHRAWVASGCTTVLVSLAKSVTCAADSHIWL 120

Query: 121 EPALAALVGYILADLGSGVYHWGIDNYGDASTPIFGTQIEAFQGHHKWPWTITKRQFANN 180
           EP LA LVGY+LADLGSGVYHWGIDNYG ASTPIFG QIEAFQGHHKWPWTIT+RQFANN
Sbjct: 121 EPFLAGLVGYVLADLGSGVYHWGIDNYGGASTPIFGPQIEAFQGHHKWPWTITRRQFANN 180

Query: 181 LYALARAVTFTVLPISLAFDDPVLQGFVGVCSGCIMFSQQFHAWAHGKKSELPPLVVAMQ 240
           L+ALAR VTF VLPI L  DDPV+ GFV VCSG IMFSQQFHAWAHG KS LPP+VVA+Q
Sbjct: 181 LHALARVVTFFVLPIDLVCDDPVVNGFVAVCSGSIMFSQQFHAWAHGTKSRLPPVVVALQ 240

Query: 241 DAGLLVSRMQHSAHHRPPYNNNYCIVSGIWNKLLDETKVFEAFEMILFFKLGLRPRSWTE 300
           D G+LVSR QH+AHHR PYNNNYCIVSG+WN+LLD+ KVFEA EM+LFFKLGLRPRSW+E
Sbjct: 241 DLGVLVSRPQHAAHHRQPYNNNYCIVSGVWNELLDQQKVFEALEMVLFFKLGLRPRSWSE 300

Query: 301 PNSEWTEETEILEQ 315
           P+SEW EETE   Q
Sbjct: 301 PSSEWIEETETASQ 305

The following BLAST results are available for this feature:
BLAST of Lsi05G006070 vs. Swiss-Prot
Match NameE-valueIdentityDescription
FAD4_ARATH8.0e-11063.95Fatty acid desaturase 4, chloroplastic OS=Arabidopsis thaliana GN=FAD4 PE=1 SV=1[more]
FD4L1_ARATH2.0e-10061.62Fatty acid desaturase 4-like 1, chloroplastic OS=Arabidopsis thaliana GN=FAD4L1 ... [more]
FD4L2_ARATH1.1e-9562.31Fatty acid desaturase 4-like 2, chloroplastic OS=Arabidopsis thaliana GN=FAD4L2 ... [more]
YL630_MIMIV3.8e-1125.70Uncharacterized protein L630 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L630 PE... [more]
BLAST of Lsi05G006070 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L6B9_CUCSA6.9e-16991.19Uncharacterized protein OS=Cucumis sativus GN=Csa_3G077710 PE=4 SV=1[more]
W9QQD6_9ROSA1.9e-12671.20Uncharacterized protein OS=Morus notabilis GN=L484_017818 PE=4 SV=1[more]
M5WU70_PRUPE1.0e-11968.97Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009008mg PE=4 SV=1[more]
U5GX40_POPTR1.6e-11766.56Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s44870g PE=4 SV=1[more]
F6HEN8_VITVI6.8e-11670.71Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0090g00120 PE=4 SV=... [more]
BLAST of Lsi05G006070 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G27030.14.5e-11163.95 fatty acid desaturase A[more]
AT1G62190.11.1e-10161.62 Kua-ubiquitin conjugating enzyme hybrid localisation domain[more]
AT2G22890.16.3e-9762.31 Kua-ubiquitin conjugating enzyme hybrid localisation domain[more]
BLAST of Lsi05G006070 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449470467|ref|XP_004152938.1|9.9e-16991.19PREDICTED: fatty acid desaturase 4, chloroplastic [Cucumis sativus][more]
gi|659126922|ref|XP_008463431.1|5.1e-16589.31PREDICTED: transmembrane protein 189 [Cucumis melo][more]
gi|703083108|ref|XP_010092130.1|2.7e-12671.20hypothetical protein L484_017818 [Morus notabilis][more]
gi|470119426|ref|XP_004295815.1|1.7e-12369.21PREDICTED: fatty acid desaturase 4, chloroplastic [Fragaria vesca subsp. vesca][more]
gi|694316075|ref|XP_009378554.1|2.2e-12068.79PREDICTED: fatty acid desaturase 4, chloroplastic-like [Pyrus x bretschneideri][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019547TMEM189_B_dmain
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016567 protein ubiquitination
biological_process GO:0008150 biological_process
biological_process GO:0030433 ER-associated ubiquitin-dependent protein catabolic process
biological_process GO:0000209 protein polyubiquitination
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005575 cellular_component
cellular_component GO:0005783 endoplasmic reticulum
molecular_function GO:0061630 ubiquitin protein ligase activity
molecular_function GO:0031625 ubiquitin protein ligase binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G006070.1Lsi05G006070.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019547B domain of TMEM189, localisation domainPFAMPF10520TMEM189_B_dmaincoord: 130..298
score: 1.7
NoneNo IPR availablePANTHERPTHR24067UBIQUITIN-CONJUGATING ENZYME E2coord: 139..318
score: 1.5
NoneNo IPR availablePANTHERPTHR24067:SF41AKT-INTERACTING PROTEINcoord: 139..318
score: 1.5