Lsi05G003630 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi05G003630
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionB3 DNA-binding domain protein
Locationchr05 : 4604462 .. 4605834 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGTCCGGCCAAGAGGAAGCACTTCCAACTCCAACAATGGAATCCCCGCAGAATGGTGAAATTTTGCCACTTTTAGGCAAACCCTACCATCCTTTTATTCTTTCTAAATCGCATGTCCCTCCCATTTACAATATTGTAAGTTCTTCATTCCTTTACAATTTTCCATTACCAAAACTCTTTAGTAATCTATTACACTTAAATATTCATGCTACTCTTTTCGGGTTTAGTTCATTTTCTTCTCTTATTTTCGACTTTAGTTCAATTTAGTTTGTTTTTTTAATTTAAAGATATTTTTAAAATTTTAAAAGTTTAAGGATATTTTTTAAAATTTTGAAACTTTAGGATATTTTTTTTATAGAAAGTACAAAGTTTAGAGGTATTTTGTATAATTTAACATTTACTCCGTACAAAATGTCTATTTTTCTCTTGTACTTTCAATTTTGATTTATTTTAATCCCTTAGTTGAGCATCCTTAACTTTGGTTTATTTGACCTTTAGGGGTTGAAGTGTGAAGTTGGTTATTATAGTTGGTGGTTATTATAGTTTGTGAGTTATAATAATTTATGTGTGGGATAGTCTGAGTTAATAACGACGTGAGAGGATAAGTAGACAATAGTAAGCACGGTGACTAATAGTCCACCCCACCACCAATTGAAGTTGAGGCCCAAACACCCTTTATTTTCAAGTTACACCTTTAGTAGTTTATTTCCACGTGCATGTGCTTCCAAAATTTGCTTAACTTTAGTTTATTTTAGTCTCTTACTCAAAGTTTCAACAAAACGTTAGTTGATTCTAGTGCATGTACTCTCAAAATATCTATTTTTTTTTACACTCTCAAAATATTTAGTTTAATCTTTAGTTTATTTAAGTCTCTACATTCTAAAAATGACTATTTCTAGTCTAGTTAACCATTTTAAAAGTACACGAATCATAATGAACTAAAGTCAAAACTACAGAGACACTAAATGTAGTATTAATTCAAAGACCGACGTTATTCATTTCAAAGTCACAAGATCGAAACACAAACCTAACAATCATATACCTAATTCATTATTTTGTAGTGTATGCCAACAAAATTTCACTCTATTTTACCTGCTATTATGATCCCTACGACTATTTTCTGTGGGGAAAAGGTATGGAAGATAGATTATTATGGGAACAGACGCAGTAAAGCACTTGATGCAAAACAATGGAAGAAGTTTGTTAATGATAATGGTTTGAAGTGTGGAGATGCTTGTGTGTTTGAGCTCTTGGAATGTAGAAGCACTTTACTCAAATTCAGAGTTCAAATTCTTAGAGGTCATATCCCTTTCCAGTTGCACCACAAGTTTAGTGGAGAAACTAAAGAGACCCCTATAATCATTGACTAG

mRNA sequence

ATGCAGTCCGGCCAAGAGGAAGCACTTCCAACTCCAACAATGGAATCCCCGCAGAATGGTGAAATTTTGCCACTTTTAGGCAAACCCTACCATCCTTTTATTCTTTCTAAATCGCATGTCCCTCCCATTTACAATATTTGTATGCCAACAAAATTTCACTCTATTTTACCTGCTATTATGATCCCTACGACTATTTTCTGTGGGGAAAAGGTATGGAAGATAGATTATTATGGGAACAGACGCAGTAAAGCACTTGATGCAAAACAATGGAAGAAGTTTGTTAATGATAATGGTTTGAAGTGTGGAGATGCTTGTGTGTTTGAGCTCTTGGAATGTAGAAGCACTTTACTCAAATTCAGAGTTCAAATTCTTAGAGGTCATATCCCTTTCCAGTTGCACCACAAGTTTAGTGGAGAAACTAAAGAGACCCCTATAATCATTGACTAG

Coding sequence (CDS)

ATGCAGTCCGGCCAAGAGGAAGCACTTCCAACTCCAACAATGGAATCCCCGCAGAATGGTGAAATTTTGCCACTTTTAGGCAAACCCTACCATCCTTTTATTCTTTCTAAATCGCATGTCCCTCCCATTTACAATATTTGTATGCCAACAAAATTTCACTCTATTTTACCTGCTATTATGATCCCTACGACTATTTTCTGTGGGGAAAAGGTATGGAAGATAGATTATTATGGGAACAGACGCAGTAAAGCACTTGATGCAAAACAATGGAAGAAGTTTGTTAATGATAATGGTTTGAAGTGTGGAGATGCTTGTGTGTTTGAGCTCTTGGAATGTAGAAGCACTTTACTCAAATTCAGAGTTCAAATTCTTAGAGGTCATATCCCTTTCCAGTTGCACCACAAGTTTAGTGGAGAAACTAAAGAGACCCCTATAATCATTGACTAG

Protein sequence

MQSGQEEALPTPTMESPQNGEILPLLGKPYHPFILSKSHVPPIYNICMPTKFHSILPAIMIPTTIFCGEKVWKIDYYGNRRSKALDAKQWKKFVNDNGLKCGDACVFELLECRSTLLKFRVQILRGHIPFQLHHKFSGETKETPIIID
Homology
[Close]
BLAST of Lsi05G003630 vs. Swiss-Prot
Match: Y4869_ORYSJ (B3 domain-containing protein Os04g0386900 OS=Oryza sativa subsp. japonica GN=Os04g0386900 PE=2 SV=3)

HSP 1 Score: 106.3 bits (264), Expect = 2.9e-22
Identity = 59/152 (38.82%), Postives = 83/152 (54.61%), Query Frame = 1 

Query: 3   SGQEEALPTPTMESPQNGE---ILPLLGKPYHPFILSKSHVPPIYNICMPTKFHSILPAI 62
           +G E A P P    P+      +LPLLGKPY   I+ KSHV P + + +P  F  +LP+ 
Sbjct: 62  AGTEAAPPRPPEPEPEKVARHGVLPLLGKPYFTCIMCKSHVQPPFQVVVPRSFAPLLPSR 121

Query: 63  MIPTTIFCGEKVWKIDYYGNRRSKALDAKQWKKFVNDNGLKCGDACVFELL---ECRSTL 122
             P T+    + W + + G R  + L+A  W+ F  DN L+ GD CVFELL         
Sbjct: 122 TTPATLSWRGRSWGMRFTGGRLIQRLEA-GWRGFAVDNDLRLGDGCVFELLVGGGGEQER 181

Query: 123 LKFRVQILRGHIPFQLHHKFSGETKETPIIID 149
           ++FRVQ+LR  IP ++  +  G T  TPI+ID
Sbjct: 182 VEFRVQVLRAEIPARIRGRAGGYTSATPIVID 212

[Close]
BLAST of Lsi05G003630 vs. Swiss-Prot
Match: Y6112_ORYSJ (B3 domain-containing protein Os06g0112300 OS=Oryza sativa subsp. japonica GN=Os06g0112300 PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.2e-14
Identity = 53/150 (35.33%), Postives = 79/150 (52.67%), Query Frame = 1 

Query: 6   EEALPTPTMESPQNGE----ILPLL-GKPYHPFILSKSHVPPIYNICMPTKFHSIL--PA 65
           ++ LP P   +  +GE      PL  G P+   +++KSH+ P + + +P +F   L  P 
Sbjct: 26  DDELPPPPPPASGSGEDWEATTPLAAGNPFFTALIAKSHLHPKFQMWIPPRFQHRLAEPE 85

Query: 66  IMIPTTIFCGEKVWKIDYYGNRRSKALDAKQWKKFVNDNGLKCGDACVFELLECRST-LL 125
                 +  G K W   Y G+ + K LDA  W +F  DN L  GDACVFEL+   +   L
Sbjct: 86  ARTAAVLHSGGKSWATSYCGHLKMKKLDAG-WSEFAVDNRLLVGDACVFELVAMGAAGGL 145

Query: 126 KFRVQILRGHIPFQLHHKFSGETKETPIII 148
           +F+VQILRG +P ++     G T + PI+I
Sbjct: 146 EFQVQILRGGLPAEVVTS-KGLTSDQPILI 173

[Close]
BLAST of Lsi05G003630 vs. TrEMBL
Match: A0A0A0L3V3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G126890 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.5e-54
Identity = 105/148 (70.95%), Postives = 119/148 (80.41%), Query Frame = 1 

Query: 1   MQSGQEEALPTPTMESPQNGEILPLLGKPYHPFILSKSHVPPIYNICMPTKFHSILPAIM 60
           MQS ++     PTME PQNGE +PL GKPYH FILSKSHV PIYN+ +P KFHSILPAI+
Sbjct: 1   MQSARKPPTELPTME-PQNGETMPLSGKPYHAFILSKSHVAPIYNLVLPAKFHSILPAIV 60

Query: 61  IPTTIFCGEKVWKIDYYGNRRSKALDAKQWKKFVNDNGLKCGDACVFELLECRSTLLKFR 120
           IP  + C  K WKIDY+GNRR KALD+KQW+KFVNDN LK GDA VFELLEC S++LKFR
Sbjct: 61  IPAVLLCRGKKWKIDYHGNRRGKALDSKQWRKFVNDNCLKSGDAIVFELLECSSSILKFR 120

Query: 121 VQILRGHIPFQLHHKFSGETKETPIIID 149
           VQIL G IP +LH KFSGETKETPI +D
Sbjct: 121 VQILSGDIPLELHDKFSGETKETPIHLD 147

[Close]
BLAST of Lsi05G003630 vs. TrEMBL
Match: F6I5F3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0024g00930 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 3.0e-26
Identity = 64/140 (45.71%), Postives = 88/140 (62.86%), Query Frame = 1 

Query: 13  TMESP----QNGEILPLLGKPYHPFILSKSHVPPIYNICMPTKFHSILPAIMIPTTIFCG 72
           T E P    Q  EI PLLGKPY   +L KSH   +  + +PTK H  +P+ +IP  +   
Sbjct: 55  TSEEPATKFQADEIHPLLGKPYFHVVLVKSH---LNQMVLPTKMHPSVPSAVIPAVLVHQ 114

Query: 73  EKVWKIDYYGNRRSKALDAKQWKKFVNDNGLKCGDACVFELLECRSTLLKFRVQILRGHI 132
           +K W++ + G+ R+       W+ FVNDN LK GDACVFEL+EC ++ +KFRVQILRG I
Sbjct: 115 DKRWEMTFNGDHRTHKRFDIGWRTFVNDNNLKAGDACVFELMECNTSNIKFRVQILRGDI 174

Query: 133 PFQLHHKFSGETKETPIIID 149
           P  L  + +GET +T I+I+
Sbjct: 175 PSMLLDRANGETSDTAIVIE 191

[Close]
BLAST of Lsi05G003630 vs. TrEMBL
Match: A0A059C4K6_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_E01753 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 5.2e-26
Identity = 63/135 (46.67%), Postives = 85/135 (62.96%), Query Frame = 1 

Query: 14  MESPQNGEILPLLGKPYHPFILSKSHVPPIYNICMPTKFHSILPAIMIPTTIFCGEKVWK 73
           M   Q  +  PL GKP+   IL+KSHV P YN+ +P++ HS+LP+    T +   +K W 
Sbjct: 80  MSGGQEDDYWPLSGKPFFDVILTKSHVQPRYNLFIPSRMHSLLPSQDTQTVLAYKDKTWN 139

Query: 74  IDYYGNRRSKALDAKQWKKFVNDNGLKCGDACVFELLECRSTLLKFRVQILRGHIPFQLH 133
           +  Y   ++K  D   WK+FV+DN LK GDACVFEL+EC ST + F+VQILR   P +L 
Sbjct: 140 VMLY--TKTKRFDYS-WKQFVDDNHLKAGDACVFELMECLSTKVTFKVQILRSDFPAELL 199

Query: 134 HKFSGETKETPIIID 149
            K SGET   PI+I+
Sbjct: 200 GKISGETAGAPIVIE 211

[Close]
BLAST of Lsi05G003630 vs. TrEMBL
Match: A5AIM5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020729 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 6.8e-26
Identity = 64/140 (45.71%), Postives = 87/140 (62.14%), Query Frame = 1 

Query: 13  TMESP----QNGEILPLLGKPYHPFILSKSHVPPIYNICMPTKFHSILPAIMIPTTIFCG 72
           T E P    Q  EI PLLGKPY   +L KSH   +  + +PTK H  +P+ +IP  +   
Sbjct: 24  TSEEPATKFQADEIHPLLGKPYFHVVLVKSH---LNQMVLPTKMHPSVPSAVIPAVLVHQ 83

Query: 73  EKVWKIDYYGNRRSKALDAKQWKKFVNDNGLKCGDACVFELLECRSTLLKFRVQILRGHI 132
            K W++ + G+ R+       W+ FVNDN LK GDACVFEL+EC ++ +KFRVQILRG I
Sbjct: 84  XKRWEMTFNGDHRTHKRFDIGWRTFVNDNNLKAGDACVFELMECNTSNIKFRVQILRGDI 143

Query: 133 PFQLHHKFSGETKETPIIID 149
           P  L  + +GET +T I+I+
Sbjct: 144 PSMLLDRANGETSDTAIVIE 160

[Close]
BLAST of Lsi05G003630 vs. TrEMBL
Match: M5X861_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa025386mg PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.3e-24
Identity = 65/150 (43.33%), Postives = 88/150 (58.67%), Query Frame = 1 

Query: 1   MQSGQEEALPT--PTMESPQNGEILPLLGKPYHPFILSKSHVPPIYNICMPTKFHSILPA 60
           M   Q E L T  P +E  +  E  PL GKP+   +L+K+ + P+  + +P KF + LP+
Sbjct: 3   MGEPQMEDLSTSNPVIEL-EGDEFWPLSGKPFFDVVLTKTSIKPMCQLVVPGKFSATLPS 62

Query: 61  IMIPTTIFCGEKVWKIDYYGNRRSKALDAKQWKKFVNDNGLKCGDACVFELLECRSTLLK 120
             IPT +    K W++ Y+G+   K LD   WK F  DN LK GDACVFE LEC ST L 
Sbjct: 63  CSIPTVLTFRGKNWEMTYHGSSNYKRLD--NWKAFAIDNNLKVGDACVFEQLECSSTRLV 122

Query: 121 FRVQILRGHIPFQLHHKFSGETKETPIIID 149
           FRVQILRG IP +   K  G+  + PI+++
Sbjct: 123 FRVQILRGDIPSEFLDKLDGDNVDAPIVLE 149

[Close]
BLAST of Lsi05G003630 vs. NCBI nr
Match: gi|778677528|ref|XP_011650806.1| (PREDICTED: B3 domain-containing protein Os04g0386900-like [Cucumis sativus])

HSP 1 Score: 220.3 bits (560), Expect = 2.2e-54
Identity = 105/148 (70.95%), Postives = 119/148 (80.41%), Query Frame = 1 

Query: 1   MQSGQEEALPTPTMESPQNGEILPLLGKPYHPFILSKSHVPPIYNICMPTKFHSILPAIM 60
           MQS ++     PTME PQNGE +PL GKPYH FILSKSHV PIYN+ +P KFHSILPAI+
Sbjct: 1   MQSARKPPTELPTME-PQNGETMPLSGKPYHAFILSKSHVAPIYNLVLPAKFHSILPAIV 60

Query: 61  IPTTIFCGEKVWKIDYYGNRRSKALDAKQWKKFVNDNGLKCGDACVFELLECRSTLLKFR 120
           IP  + C  K WKIDY+GNRR KALD+KQW+KFVNDN LK GDA VFELLEC S++LKFR
Sbjct: 61  IPAVLLCRGKKWKIDYHGNRRGKALDSKQWRKFVNDNCLKSGDAIVFELLECSSSILKFR 120

Query: 121 VQILRGHIPFQLHHKFSGETKETPIIID 149
           VQIL G IP +LH KFSGETKETPI +D
Sbjct: 121 VQILSGDIPLELHDKFSGETKETPIHLD 147

[Close]
BLAST of Lsi05G003630 vs. NCBI nr
Match: gi|470135893|ref|XP_004303740.1| (PREDICTED: B3 domain-containing protein Os04g0386900-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 132.1 bits (331), Expect = 7.9e-28
Identity = 63/127 (49.61%), Postives = 80/127 (62.99%), Query Frame = 1 

Query: 21  EILPLLGKPYHPFILSKSHVPPIYNICMPTKFHSILPAIMIPTTIFCGEKVWKIDYYGNR 80
           E  PL GKP+   IL+KSHV P Y + +P K HSILP   IPT +    K W++   G  
Sbjct: 19  EFWPLSGKPFFDIILAKSHVKPSYMLGIPAKLHSILPPCSIPTVLNFAGKSWEMTCGGKH 78

Query: 81  RSKALDAKQWKKFVNDNGLKCGDACVFELLECRSTLLKFRVQILRGHIPFQLHHKFSGET 140
           R   LD + WK FV+DN LK GD CVFE++EC +T L+ RVQILRG IP +L  K  G+ 
Sbjct: 79  RKHKLDKESWKAFVDDNKLKAGDGCVFEVMECSTTKLELRVQILRGDIPAELLEKERGDE 138

Query: 141 KETPIII 148
            E PI++
Sbjct: 139 AEKPIVL 145

[Close]
BLAST of Lsi05G003630 vs. NCBI nr
Match: gi|694428103|ref|XP_009341640.1| (PREDICTED: B3 domain-containing protein Os04g0386900-like isoform X2 [Pyrus x bretschneideri])

HSP 1 Score: 132.1 bits (331), Expect = 7.9e-28
Identity = 65/131 (49.62%), Postives = 82/131 (62.60%), Query Frame = 1 

Query: 18  QNGEILPLLGKPYHPFILSKSHVPPIYNICMPTKFHSILPAIMIPTTIFCGEKVWKIDYY 77
           Q  E  PL  KP+   +++K++V P Y + +P KF   LP+  IPT +  G K W++ Y 
Sbjct: 14  QGDEFWPLSEKPFFEVVITKANVKPSYQMVIPAKFQQTLPSCSIPTVLTFGGKNWEMTYT 73

Query: 78  GNRRSKALDAKQWKKFVNDNGLKCGDACVFELLECRSTLLKFRVQILRGHIPFQLHHKFS 137
                +  D   W++FVNDN LK GDACVFELLEC ST L FRVQILRG IP +L  K  
Sbjct: 74  HGSGQRKFDTN-WREFVNDNNLKVGDACVFELLECSSTKLVFRVQILRGDIPSELLGKLK 133

Query: 138 GETKETPIIID 149
           GET + PIIID
Sbjct: 134 GETVDAPIIID 143

[Close]
BLAST of Lsi05G003630 vs. NCBI nr
Match: gi|657949831|ref|XP_008345126.1| (PREDICTED: B3 domain-containing protein Os06g0112300-like [Malus domestica])

HSP 1 Score: 130.2 bits (326), Expect = 3.0e-27
Identity = 67/140 (47.86%), Postives = 84/140 (60.00%), Query Frame = 1 

Query: 12  PTMESP---QNGEILPLLGKPYHPFILSKSHVPPIYNICMPTKFHSILPAIMIPTTIFCG 71
           PT   P   Q  E  PL  KP+   +++K++V P Y + +P KF   LP+  I T +  G
Sbjct: 5   PTSNPPIELQGDEFWPLSEKPFFEVVIAKANVKPSYQMVIPAKFQQTLPSCSIHTVLMFG 64

Query: 72  EKVWKIDYYGNRRSKALDAKQWKKFVNDNGLKCGDACVFELLECRSTLLKFRVQILRGHI 131
            K W++ Y      +  D   W++FVNDN LK GDACVFELLEC ST L FRVQILRG I
Sbjct: 65  GKNWEMTYTCGSGQRKFDTN-WREFVNDNNLKVGDACVFELLECSSTKLIFRVQILRGDI 124

Query: 132 PFQLHHKFSGETKETPIIID 149
           P +L  K  GET + PIIID
Sbjct: 125 PSELLRKLKGETVDAPIIID 143

[Close]
BLAST of Lsi05G003630 vs. NCBI nr
Match: gi|225436198|ref|XP_002267731.1| (PREDICTED: B3 domain-containing protein Os04g0386900 [Vitis vinifera])

HSP 1 Score: 126.3 bits (316), Expect = 4.4e-26
Identity = 64/140 (45.71%), Postives = 88/140 (62.86%), Query Frame = 1 

Query: 13  TMESP----QNGEILPLLGKPYHPFILSKSHVPPIYNICMPTKFHSILPAIMIPTTIFCG 72
           T E P    Q  EI PLLGKPY   +L KSH   +  + +PTK H  +P+ +IP  +   
Sbjct: 55  TSEEPATKFQADEIHPLLGKPYFHVVLVKSH---LNQMVLPTKMHPSVPSAVIPAVLVHQ 114

Query: 73  EKVWKIDYYGNRRSKALDAKQWKKFVNDNGLKCGDACVFELLECRSTLLKFRVQILRGHI 132
           +K W++ + G+ R+       W+ FVNDN LK GDACVFEL+EC ++ +KFRVQILRG I
Sbjct: 115 DKRWEMTFNGDHRTHKRFDIGWRTFVNDNNLKAGDACVFELMECNTSNIKFRVQILRGDI 174

Query: 133 PFQLHHKFSGETKETPIIID 149
           P  L  + +GET +T I+I+
Sbjct: 175 PSMLLDRANGETSDTAIVIE 191

The following BLAST results are available for this feature:
BLAST of Lsi05G003630 vs. Swiss-Prot
Match NameE-valueIdentityDescription
Y4869_ORYSJ2.9e-2238.82B3 domain-containing protein Os04g0386900 OS=Oryza sativa subsp. japonica GN=Os0... [more]
Y6112_ORYSJ2.2e-1435.33B3 domain-containing protein Os06g0112300 OS=Oryza sativa subsp. japonica GN=Os0... [more]
BLAST of Lsi05G003630 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L3V3_CUCSA1.5e-5470.95Uncharacterized protein OS=Cucumis sativus GN=Csa_3G126890 PE=4 SV=1[more]
F6I5F3_VITVI3.0e-2645.71Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0024g00930 PE=4 SV=... [more]
A0A059C4K6_EUCGR5.2e-2646.67Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_E01753 PE=4 ... [more]
A5AIM5_VITVI6.8e-2645.71Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020729 PE=4 SV=1[more]
M5X861_PRUPE1.3e-2443.33Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa025386mg PE=4 S... [more]
BLAST of Lsi05G003630 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi05G003630 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778677528|ref|XP_011650806.1|2.2e-5470.95PREDICTED: B3 domain-containing protein Os04g0386900-like [Cucumis sativus][more]
gi|470135893|ref|XP_004303740.1|7.9e-2849.61PREDICTED: B3 domain-containing protein Os04g0386900-like [Fragaria vesca subsp.... [more]
gi|694428103|ref|XP_009341640.1|7.9e-2849.62PREDICTED: B3 domain-containing protein Os04g0386900-like isoform X2 [Pyrus x br... [more]
gi|657949831|ref|XP_008345126.1|3.0e-2747.86PREDICTED: B3 domain-containing protein Os06g0112300-like [Malus domestica][more]
gi|225436198|ref|XP_002267731.1|4.4e-2645.71PREDICTED: B3 domain-containing protein Os04g0386900 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR015300DNA-bd_pseudobarrel_sf
IPR003340B3_DNA-bd
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G003630.1Lsi05G003630.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003340B3 DNA binding domainPFAMPF02362B3coord: 69..119
score: 7.
IPR003340B3 DNA binding domainPROFILEPS50863B3coord: 70..127
score: 10
IPR015300DNA-binding pseudobarrel domainGENE3DG3DSA:2.40.330.10coord: 34..125
score: 6.4
IPR015300DNA-binding pseudobarrel domainunknownSSF101936DNA-binding pseudobarrel domaincoord: 29..122
score: 1.22
NoneNo IPR availablePANTHERPTHR31391FAMILY NOT NAMEDcoord: 18..147
score: 4.6
NoneNo IPR availablePANTHERPTHR31391:SF15SUBFAMILY NOT NAMEDcoord: 18..147
score: 4.6