ClCG05G011530 (gene) Watermelon (Charleston Gray)

NameClCG05G011530
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionB3 domain-containing protein
LocationCG_Chr05 : 13792769 .. 13793477 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCCGCCGCAAAATGGTGAAATTTTGCCACTTTTAGGCAAACTCTACCATCCTTTTATTCTTTCTAAATCGCATGCCCCTCCCATTTACAATATTGTAAGTTCTTCATTCCTTTACAGTTTTCCATTCCAAAAACCATTACAAAAACAACTCTTAAAACCTTGCTCTTTTACCATCTATTACCCATAAATACTCATGCTACTCTTTTTGGGCTGTAGTTCATTTTCGTCTCTTACTTTTCACTTTAAATTCAATTTATATAATCTTTTTGTACTTTCAAAACATGTATTTTCGTTTTGTAATTTCATTCATTTTAATATTTTTACCTTTCAAGGTTTCAACTTTTTGACATCATCAAATCACTAACCTAACAATGATATAACTATTTCATTATTTGTAGTGTTTGCCAACAAAATTTCACTCTGTTTTACCTGCTCTTATGATCCCTACGGCTATTTTGTGTGGGGAAAAGGTATGGAAGATAGATTATTATGGGAACAGACGCAGTAAAGCACTTGATCCCAAACAATGGAAGAAGTTTGTTAATGATAATGGTTTAAAGTGTGGAGATGCTTGCGTATTTGAGCTCTTGGAATGTAGCAGCACTTTACTCAAATTCAGAGTTCAAATTCTTAGAGGTCACATCCCTTTCCAGCTGCACCACAAGTTCAGTGGAGAAACTAAGGACATCCCTATAATTATCGAC

mRNA sequence

ATGGAGCCGCCGCAAAATGGTGAAATTTTGCCACTTTTAGGCAAACTCTACCATCCTTTTATTCTTTCTAAATCGCATGCCCCTCCCATTTACAATATTTGTTTGCCAACAAAATTTCACTCTGTTTTACCTGCTCTTATGATCCCTACGGCTATTTTGTGTGGGGAAAAGGTATGGAAGATAGATTATTATGGGAACAGACGCAGTAAAGCACTTGATCCCAAACAATGGAAGAAGTTTGTTAATGATAATGGTTTAAAGTGTGGAGATGCTTGCGTATTTGAGCTCTTGGAATGTAGCAGCACTTTACTCAAATTCAGAGTTCAAATTCTTAGAGGTCACATCCCTTTCCAGCTGCACCACAAGTTCAGTGGAGAAACTAAGGACATCCCTATAATTATCGAC

Coding sequence (CDS)

ATGGAGCCGCCGCAAAATGGTGAAATTTTGCCACTTTTAGGCAAACTCTACCATCCTTTTATTCTTTCTAAATCGCATGCCCCTCCCATTTACAATATTTGTTTGCCAACAAAATTTCACTCTGTTTTACCTGCTCTTATGATCCCTACGGCTATTTTGTGTGGGGAAAAGGTATGGAAGATAGATTATTATGGGAACAGACGCAGTAAAGCACTTGATCCCAAACAATGGAAGAAGTTTGTTAATGATAATGGTTTAAAGTGTGGAGATGCTTGCGTATTTGAGCTCTTGGAATGTAGCAGCACTTTACTCAAATTCAGAGTTCAAATTCTTAGAGGTCACATCCCTTTCCAGCTGCACCACAAGTTCAGTGGAGAAACTAAGGACATCCCTATAATTATCGAC

Protein sequence

MEPPQNGEILPLLGKLYHPFILSKSHAPPIYNICLPTKFHSVLPALMIPTAILCGEKVWKIDYYGNRRSKALDPKQWKKFVNDNGLKCGDACVFELLECSSTLLKFRVQILRGHIPFQLHHKFSGETKDIPIIID
BLAST of ClCG05G011530 vs. Swiss-Prot
Match: Y4869_ORYSJ (B3 domain-containing protein Os04g0386900 OS=Oryza sativa subsp. japonica GN=Os04g0386900 PE=2 SV=3)

HSP 1 Score: 87.8 bits (216), Expect = 9.8e-17
Identity = 48/130 (36.92%), Postives = 68/130 (52.31%), Query Frame = 1

Query: 9   ILPLLGKLYHPFILSKSHAPPIYNICLPTKFHSVLPALMIPTAILCGEKVWKIDYYGNRR 68
           +LPLLGK Y   I+ KSH  P + + +P  F  +LP+   P  +    + W + + G R 
Sbjct: 84  VLPLLGKPYFTCIMCKSHVQPPFQVVVPRSFAPLLPSRTTPATLSWRGRSWGMRFTGGRL 143

Query: 69  SKALDPKQWKKFVNDNGLKCGDACVFELLECSS---TLLKFRVQILRGHIPFQLHHKFSG 128
            + L+   W+ F  DN L+ GD CVFELL         ++FRVQ+LR  IP ++  +  G
Sbjct: 144 IQRLEAG-WRGFAVDNDLRLGDGCVFELLVGGGGEQERVEFRVQVLRAEIPARIRGRAGG 203

Query: 129 ETKDIPIIID 136
            T   PI+ID
Sbjct: 204 YTSATPIVID 212

BLAST of ClCG05G011530 vs. Swiss-Prot
Match: Y6112_ORYSJ (B3 domain-containing protein Os06g0112300 OS=Oryza sativa subsp. japonica GN=Os06g0112300 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.8e-11
Identity = 45/124 (36.29%), Postives = 63/124 (50.81%), Query Frame = 1

Query: 14  GKLYHPFILSKSHAPPIYNICLPTKFHSVL--PALMIPTAILCGEKVWKIDYYGNRRSKA 73
           G  +   +++KSH  P + + +P +F   L  P       +  G K W   Y G+ + K 
Sbjct: 52  GNPFFTALIAKSHLHPKFQMWIPPRFQHRLAEPEARTAAVLHSGGKSWATSYCGHLKMKK 111

Query: 74  LDPKQWKKFVNDNGLKCGDACVFELLECSST-LLKFRVQILRGHIPFQLHHKFSGETKDI 133
           LD   W +F  DN L  GDACVFEL+   +   L+F+VQILRG +P ++     G T D 
Sbjct: 112 LDAG-WSEFAVDNRLLVGDACVFELVAMGAAGGLEFQVQILRGGLPAEVVTS-KGLTSDQ 171

Query: 134 PIII 135
           PI+I
Sbjct: 172 PILI 173

BLAST of ClCG05G011530 vs. TrEMBL
Match: A0A0A0L3V3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G126890 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.4e-49
Identity = 95/132 (71.97%), Postives = 108/132 (81.82%), Query Frame = 1

Query: 4   PQNGEILPLLGKLYHPFILSKSHAPPIYNICLPTKFHSVLPALMIPTAILCGEKVWKIDY 63
           PQNGE +PL GK YH FILSKSH  PIYN+ LP KFHS+LPA++IP  +LC  K WKIDY
Sbjct: 16  PQNGETMPLSGKPYHAFILSKSHVAPIYNLVLPAKFHSILPAIVIPAVLLCRGKKWKIDY 75

Query: 64  YGNRRSKALDPKQWKKFVNDNGLKCGDACVFELLECSSTLLKFRVQILRGHIPFQLHHKF 123
           +GNRR KALD KQW+KFVNDN LK GDA VFELLECSS++LKFRVQIL G IP +LH KF
Sbjct: 76  HGNRRGKALDSKQWRKFVNDNCLKSGDAIVFELLECSSSILKFRVQILSGDIPLELHDKF 135

Query: 124 SGETKDIPIIID 136
           SGETK+ PI +D
Sbjct: 136 SGETKETPIHLD 147

BLAST of ClCG05G011530 vs. TrEMBL
Match: F6I5F3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0024g00930 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.0e-24
Identity = 61/131 (46.56%), Postives = 85/131 (64.89%), Query Frame = 1

Query: 5   QNGEILPLLGKLYHPFILSKSHAPPIYNICLPTKFHSVLPALMIPTAILCGEKVWKIDYY 64
           Q  EI PLLGK Y   +L KSH   +  + LPTK H  +P+ +IP  ++  +K W++ + 
Sbjct: 64  QADEIHPLLGKPYFHVVLVKSH---LNQMVLPTKMHPSVPSAVIPAVLVHQDKRWEMTFN 123

Query: 65  GNRRSKALDPKQWKKFVNDNGLKCGDACVFELLECSSTLLKFRVQILRGHIPFQLHHKFS 124
           G+ R+       W+ FVNDN LK GDACVFEL+EC+++ +KFRVQILRG IP  L  + +
Sbjct: 124 GDHRTHKRFDIGWRTFVNDNNLKAGDACVFELMECNTSNIKFRVQILRGDIPSMLLDRAN 183

Query: 125 GETKDIPIIID 136
           GET D  I+I+
Sbjct: 184 GETSDTAIVIE 191

BLAST of ClCG05G011530 vs. TrEMBL
Match: A5AIM5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020729 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 4.4e-24
Identity = 61/131 (46.56%), Postives = 84/131 (64.12%), Query Frame = 1

Query: 5   QNGEILPLLGKLYHPFILSKSHAPPIYNICLPTKFHSVLPALMIPTAILCGEKVWKIDYY 64
           Q  EI PLLGK Y   +L KSH   +  + LPTK H  +P+ +IP  ++   K W++ + 
Sbjct: 33  QADEIHPLLGKPYFHVVLVKSH---LNQMVLPTKMHPSVPSAVIPAVLVHQXKRWEMTFN 92

Query: 65  GNRRSKALDPKQWKKFVNDNGLKCGDACVFELLECSSTLLKFRVQILRGHIPFQLHHKFS 124
           G+ R+       W+ FVNDN LK GDACVFEL+EC+++ +KFRVQILRG IP  L  + +
Sbjct: 93  GDHRTHKRFDIGWRTFVNDNNLKAGDACVFELMECNTSNIKFRVQILRGDIPSMLLDRAN 152

Query: 125 GETKDIPIIID 136
           GET D  I+I+
Sbjct: 153 GETSDTAIVIE 160

BLAST of ClCG05G011530 vs. TrEMBL
Match: A0A059C4K6_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_E01753 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.3e-23
Identity = 61/135 (45.19%), Postives = 83/135 (61.48%), Query Frame = 1

Query: 1   MEPPQNGEILPLLGKLYHPFILSKSHAPPIYNICLPTKFHSVLPALMIPTAILCGEKVWK 60
           M   Q  +  PL GK +   IL+KSH  P YN+ +P++ HS+LP+    T +   +K W 
Sbjct: 80  MSGGQEDDYWPLSGKPFFDVILTKSHVQPRYNLFIPSRMHSLLPSQDTQTVLAYKDKTWN 139

Query: 61  IDYYGNRRSKALDPKQWKKFVNDNGLKCGDACVFELLECSSTLLKFRVQILRGHIPFQLH 120
           +  Y   ++K  D   WK+FV+DN LK GDACVFEL+EC ST + F+VQILR   P +L 
Sbjct: 140 VMLY--TKTKRFD-YSWKQFVDDNHLKAGDACVFELMECLSTKVTFKVQILRSDFPAELL 199

Query: 121 HKFSGETKDIPIIID 136
            K SGET   PI+I+
Sbjct: 200 GKISGETAGAPIVIE 211

BLAST of ClCG05G011530 vs. TrEMBL
Match: M5X861_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa025386mg PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 2.2e-23
Identity = 59/131 (45.04%), Postives = 79/131 (60.31%), Query Frame = 1

Query: 5   QNGEILPLLGKLYHPFILSKSHAPPIYNICLPTKFHSVLPALMIPTAILCGEKVWKIDYY 64
           +  E  PL GK +   +L+K+   P+  + +P KF + LP+  IPT +    K W++ Y+
Sbjct: 21  EGDEFWPLSGKPFFDVVLTKTSIKPMCQLVVPGKFSATLPSCSIPTVLTFRGKNWEMTYH 80

Query: 65  GNRRSKALDPKQWKKFVNDNGLKCGDACVFELLECSSTLLKFRVQILRGHIPFQLHHKFS 124
           G+   K LD   WK F  DN LK GDACVFE LECSST L FRVQILRG IP +   K  
Sbjct: 81  GSSNYKRLD--NWKAFAIDNNLKVGDACVFEQLECSSTRLVFRVQILRGDIPSEFLDKLD 140

Query: 125 GETKDIPIIID 136
           G+  D PI+++
Sbjct: 141 GDNVDAPIVLE 149

BLAST of ClCG05G011530 vs. NCBI nr
Match: gi|778677528|ref|XP_011650806.1| (PREDICTED: B3 domain-containing protein Os04g0386900-like [Cucumis sativus])

HSP 1 Score: 203.8 bits (517), Expect = 2.0e-49
Identity = 95/132 (71.97%), Postives = 108/132 (81.82%), Query Frame = 1

Query: 4   PQNGEILPLLGKLYHPFILSKSHAPPIYNICLPTKFHSVLPALMIPTAILCGEKVWKIDY 63
           PQNGE +PL GK YH FILSKSH  PIYN+ LP KFHS+LPA++IP  +LC  K WKIDY
Sbjct: 16  PQNGETMPLSGKPYHAFILSKSHVAPIYNLVLPAKFHSILPAIVIPAVLLCRGKKWKIDY 75

Query: 64  YGNRRSKALDPKQWKKFVNDNGLKCGDACVFELLECSSTLLKFRVQILRGHIPFQLHHKF 123
           +GNRR KALD KQW+KFVNDN LK GDA VFELLECSS++LKFRVQIL G IP +LH KF
Sbjct: 76  HGNRRGKALDSKQWRKFVNDNCLKSGDAIVFELLECSSSILKFRVQILSGDIPLELHDKF 135

Query: 124 SGETKDIPIIID 136
           SGETK+ PI +D
Sbjct: 136 SGETKETPIHLD 147

BLAST of ClCG05G011530 vs. NCBI nr
Match: gi|694428103|ref|XP_009341640.1| (PREDICTED: B3 domain-containing protein Os04g0386900-like isoform X2 [Pyrus x bretschneideri])

HSP 1 Score: 127.5 bits (319), Expect = 1.8e-26
Identity = 65/131 (49.62%), Postives = 81/131 (61.83%), Query Frame = 1

Query: 5   QNGEILPLLGKLYHPFILSKSHAPPIYNICLPTKFHSVLPALMIPTAILCGEKVWKIDYY 64
           Q  E  PL  K +   +++K++  P Y + +P KF   LP+  IPT +  G K W++ Y 
Sbjct: 14  QGDEFWPLSEKPFFEVVITKANVKPSYQMVIPAKFQQTLPSCSIPTVLTFGGKNWEMTYT 73

Query: 65  GNRRSKALDPKQWKKFVNDNGLKCGDACVFELLECSSTLLKFRVQILRGHIPFQLHHKFS 124
                +  D   W++FVNDN LK GDACVFELLECSST L FRVQILRG IP +L  K  
Sbjct: 74  HGSGQRKFDTN-WREFVNDNNLKVGDACVFELLECSSTKLVFRVQILRGDIPSELLGKLK 133

Query: 125 GETKDIPIIID 136
           GET D PIIID
Sbjct: 134 GETVDAPIIID 143

BLAST of ClCG05G011530 vs. NCBI nr
Match: gi|657949831|ref|XP_008345126.1| (PREDICTED: B3 domain-containing protein Os06g0112300-like [Malus domestica])

HSP 1 Score: 125.2 bits (313), Expect = 8.8e-26
Identity = 64/131 (48.85%), Postives = 81/131 (61.83%), Query Frame = 1

Query: 5   QNGEILPLLGKLYHPFILSKSHAPPIYNICLPTKFHSVLPALMIPTAILCGEKVWKIDYY 64
           Q  E  PL  K +   +++K++  P Y + +P KF   LP+  I T ++ G K W++ Y 
Sbjct: 14  QGDEFWPLSEKPFFEVVIAKANVKPSYQMVIPAKFQQTLPSCSIHTVLMFGGKNWEMTYT 73

Query: 65  GNRRSKALDPKQWKKFVNDNGLKCGDACVFELLECSSTLLKFRVQILRGHIPFQLHHKFS 124
                +  D   W++FVNDN LK GDACVFELLECSST L FRVQILRG IP +L  K  
Sbjct: 74  CGSGQRKFDTN-WREFVNDNNLKVGDACVFELLECSSTKLIFRVQILRGDIPSELLRKLK 133

Query: 125 GETKDIPIIID 136
           GET D PIIID
Sbjct: 134 GETVDAPIIID 143

BLAST of ClCG05G011530 vs. NCBI nr
Match: gi|470135893|ref|XP_004303740.1| (PREDICTED: B3 domain-containing protein Os04g0386900-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 123.6 bits (309), Expect = 2.6e-25
Identity = 60/127 (47.24%), Postives = 79/127 (62.20%), Query Frame = 1

Query: 8   EILPLLGKLYHPFILSKSHAPPIYNICLPTKFHSVLPALMIPTAILCGEKVWKIDYYGNR 67
           E  PL GK +   IL+KSH  P Y + +P K HS+LP   IPT +    K W++   G  
Sbjct: 19  EFWPLSGKPFFDIILAKSHVKPSYMLGIPAKLHSILPPCSIPTVLNFAGKSWEMTCGGKH 78

Query: 68  RSKALDPKQWKKFVNDNGLKCGDACVFELLECSSTLLKFRVQILRGHIPFQLHHKFSGET 127
           R   LD + WK FV+DN LK GD CVFE++ECS+T L+ RVQILRG IP +L  K  G+ 
Sbjct: 79  RKHKLDKESWKAFVDDNKLKAGDGCVFEVMECSTTKLELRVQILRGDIPAELLEKERGDE 138

Query: 128 KDIPIII 135
            + PI++
Sbjct: 139 AEKPIVL 145

BLAST of ClCG05G011530 vs. NCBI nr
Match: gi|225436198|ref|XP_002267731.1| (PREDICTED: B3 domain-containing protein Os04g0386900 [Vitis vinifera])

HSP 1 Score: 120.2 bits (300), Expect = 2.8e-24
Identity = 61/131 (46.56%), Postives = 85/131 (64.89%), Query Frame = 1

Query: 5   QNGEILPLLGKLYHPFILSKSHAPPIYNICLPTKFHSVLPALMIPTAILCGEKVWKIDYY 64
           Q  EI PLLGK Y   +L KSH   +  + LPTK H  +P+ +IP  ++  +K W++ + 
Sbjct: 64  QADEIHPLLGKPYFHVVLVKSH---LNQMVLPTKMHPSVPSAVIPAVLVHQDKRWEMTFN 123

Query: 65  GNRRSKALDPKQWKKFVNDNGLKCGDACVFELLECSSTLLKFRVQILRGHIPFQLHHKFS 124
           G+ R+       W+ FVNDN LK GDACVFEL+EC+++ +KFRVQILRG IP  L  + +
Sbjct: 124 GDHRTHKRFDIGWRTFVNDNNLKAGDACVFELMECNTSNIKFRVQILRGDIPSMLLDRAN 183

Query: 125 GETKDIPIIID 136
           GET D  I+I+
Sbjct: 184 GETSDTAIVIE 191

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Y4869_ORYSJ9.8e-1736.92B3 domain-containing protein Os04g0386900 OS=Oryza sativa subsp. japonica GN=Os0... [more]
Y6112_ORYSJ2.8e-1136.29B3 domain-containing protein Os06g0112300 OS=Oryza sativa subsp. japonica GN=Os0... [more]
Match NameE-valueIdentityDescription
A0A0A0L3V3_CUCSA1.4e-4971.97Uncharacterized protein OS=Cucumis sativus GN=Csa_3G126890 PE=4 SV=1[more]
F6I5F3_VITVI2.0e-2446.56Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0024g00930 PE=4 SV=... [more]
A5AIM5_VITVI4.4e-2446.56Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020729 PE=4 SV=1[more]
A0A059C4K6_EUCGR1.3e-2345.19Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_E01753 PE=4 ... [more]
M5X861_PRUPE2.2e-2345.04Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa025386mg PE=4 S... [more]
Match NameE-valueIdentityDescription
gi|778677528|ref|XP_011650806.1|2.0e-4971.97PREDICTED: B3 domain-containing protein Os04g0386900-like [Cucumis sativus][more]
gi|694428103|ref|XP_009341640.1|1.8e-2649.62PREDICTED: B3 domain-containing protein Os04g0386900-like isoform X2 [Pyrus x br... [more]
gi|657949831|ref|XP_008345126.1|8.8e-2648.85PREDICTED: B3 domain-containing protein Os06g0112300-like [Malus domestica][more]
gi|470135893|ref|XP_004303740.1|2.6e-2547.24PREDICTED: B3 domain-containing protein Os04g0386900-like [Fragaria vesca subsp.... [more]
gi|225436198|ref|XP_002267731.1|2.8e-2446.56PREDICTED: B3 domain-containing protein Os04g0386900 [Vitis vinifera][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003340B3_DNA-bd
IPR015300DNA-bd_pseudobarrel_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G011530.1ClCG05G011530.1mRNA


Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003340B3 DNA binding domainPFAMPF02362B3coord: 56..102
score: 4.
IPR003340B3 DNA binding domainPROFILEPS50863B3coord: 57..114
score: 9
IPR015300DNA-binding pseudobarrel domainGENE3DG3DSA:2.40.330.10coord: 22..112
score: 2.5
IPR015300DNA-binding pseudobarrel domainunknownSSF101936DNA-binding pseudobarrel domaincoord: 20..109
score: 3.92
NoneNo IPR availablePANTHERPTHR31391FAMILY NOT NAMEDcoord: 5..134
score: 3.8
NoneNo IPR availablePANTHERPTHR31391:SF15SUBFAMILY NOT NAMEDcoord: 5..134
score: 3.8

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG05G011530Cla013223Watermelon (97103) v1wcgwmB286
ClCG05G011530Cla97C05G093600Watermelon (97103) v2wcgwmbB229
ClCG05G011530Lsi05G003630Bottle gourd (USVL1VR-Ls)lsiwcgB332
The following gene(s) are paralogous to this gene:

None