Lsi05G003560 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G003560
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	RNA-binding family protein
Location	chr05 : 4518645 .. 4529763 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACTCCTTTGGATATGTCACTAGAGGACGTGATAAAGAAGAATAACCGTGAGAAGCTTAGAGCACGAGGTAGGGCCCGTCGTGGGCGTGGAGCAGGTGGGTCTTTTAATGGTGGAAGAGGAGTAGTGATAGGGTCAGTTCGTAGAGGTCCTCTTGGCATAAATGCGCGGGCATCTGCTTACTCAATTCGCAAGGCAAGCTTCAAACTGTGATGTTTAATGCATATGCTTGAGAACCTGATATTCCTTGAAAATACATGCTCACGGGGATTTCAAATAACACTATAGTAACTCTTAACAGAAGTGGATGAGTAAAATTGTTGTTCTGTGGAGAATCTCATTGTGGGTCACCCTCTGATCTGAATCGTCTTCTGGTGTATTTGTACCATTATCTTTGCAAATATTGAATACGTGTGGGTTATCTGGGTTATTTTCAAAGGACTTTCAAGGGTGGAGAATTATATTCTTGTCGATTTATAAGCTGATATGTGTTTTCCCCGTCTGGATTCTTATCTGCATGCTTTCATCAGCCCCCACGCAGAATGAAGAATGTTCAATGGAAGCATGATTTATTCGAAGATAGTCTTAGAGCTTCAGGGATTTCTGGAATTGAAATTGGCACAAAGTTGTACGTTTCCAACTTGGATTATGGGGTGACCAAAGAAGATATAAGGGTACAACTCAAGCCATATATATTTTACTAAAGATGCTTTCTCTTCACTTTTTTTTTCGATTAATATTCACTTGGAACCTGACGGTGAACTCAGGAGTTGTTCTCTGAGATTGGAGACCTGAAAAGATTTGCAATTCATTATGACAAAAATGGTCGTCCAAGTGTAAGTTCCTCCCTGTATTTGTAAATTTATGCAGTAATGTGTTGCTATTTGGCTTTCTCTGGAATCAAGGATTAATATTGTTTTGGTAGCCACAACTGTGTGACCATTGAATCAACATTTGCTTTTGGTGGATTCAACTTTATCTGTATGCAGTACTGAAATCTCAATCTTTACTTTAGAAGTTGGATAGTGCTGGAAAAAACTATTATGAGGAACTTTTGACTAGAGTACATAACAACTTCAAGTTAATGAATAAATTATATATATTGCACATTTTTATATAATTTCTCCTTAATGGTTTAATATTTTATTTCATGAAGAAAACTACACTCCAAAGTAATAAATTGATTATTAGTTATTTGTGGTTCAAAAGTTTCCGTTTATGAATTAAAGTATGGATGGGATAAAAGTGATCTTATTTCGAGTAAAAAAATATGTTGTATTTTTAATTAACCAACTTGTGTTGGCTAGGCTTAACACGCTTCATTTTTAAGAAGTTTGAACGTAGCTAATTTAATATATTCAGTTCATTTCAATCTAGATATCCCAAAAACTTGTTACTCCAACCCAACCCATTAAGCTTTTCAGGGCTGATTTTCTTTTCCCCTTCTTTAAGGACTAAACCTATCTGCAAAGCAGTACAATATATGAGATTGTGGTTTCATATGTGGTGGCATAGTCTCATTCTTTAGTGTGTATTGATCCTTGACCATGTATTCTCTATTTCTTGCTCCTCTACATTGTCTTTGCTTATCAATTATCGTTGTTATTCATTTTTACTTTCTCTTAAGTTAGCATGAGATTTAGTAGAAAATATGATAATTATCGTATTTATGTTTTAGAAGCGTATATAAAAGTTAGCTCCCTAATCAAGCTTTAGCTGGCTGATAAACTTTCCATTGTCTATTGAAGGGCTCAGCAGAGGTGGTATATACTCGTAGAAGTGATGCATTTGCTGCTCTGAAGCGCTATAACAATGTGTTATTGGATGGGAAGCCAATGAAGATTGAAATGCTTGGTGATAATGCTGAAATGCCGGTTTCTGCACGTATAAATGTTACTGGAGTGAATGGAAGAAGCAGGAGGACAGTTGTTCTAACGTATGTAGTATTCTAGTTACTTTTCTCTTCCTTTTTGTCCCTTTTCTTAATTAATTTGAACATCTTTATAGGTAATTATTGTGTCCTGGGAGTAAAAAGTTACTGCACATTATTCTATTTCTTGGTCATTTTTATCCTGCTACTTTTAAGTTTCTTATTCCCTAAAGGGAAACTATCATTGGGTTCATTCCCAATTAGTCGGATCAATGGTGTTCGAAAAATTTTCTGAAGGCGTTTCTAGATTGGCTGATCAAGGTTCTCCCTTTAACTTTCTCAACAAATTACAAACTTGCTTATAGACTGACAGACAAATAACAGACTCCATTTGTATAGCTAGTGAAATAGCTGATGCTGACAAGGAGCAGACTCGAGGATAAATCTTTATATTAGACTTGGAAAAGGCCTGTAAGCTATTTAGTTAGGACTTCCATCCAAAGACTTCGAGAATAAAGGTTCTGAGCCAATTGGGGTAGATGGAAGCTTAATTGTTTGATAGATTCACCTATTATCAAATTTTCCATCTTCATCAATGGAAGGCCTAGAGGATGGGTTAAAACTTTAAAGTTCTTCCTATTAAAAAAAAAATCTTTAAAGTTCTTCAATAAGGTGACTTTCTGTGACATGCAGTACTAGATAATTGGGATAAAATATGGATTTTATTCAAATATCGAGATGCAGGCTTAGTTTCTTAGGACACCTTCAGAAGTTTGTGGAACGTGAACTCCCCCTATTTTTCCAGTTTTCTCTCTTTATTTTCCTTTTCCATGGGGGAGGGTAGTAAAGTGAAACCTAAAATGGATCAATGGAAACAACCCAATTGCGATATATATCTTGAATAGAAAGCCCTTCAAACTTCTGGGAGCGAGAGATCACCATGAGGTGACTAAGGTTGGGTCTAAGGAGTGGCTTTGTCTCATATGCAGTTTGTAGATGATACGATGTTTTTCTCTTTTGGCAAAGAGGATTCCTTCATCACTCTTAATCACATTCTTGGCTTCTTTGGGATGATGTCGGGGCTTCAAATCAATAGGAGTTAGTGTCAGATCTTGGGTATTAACTGTGATCAGGAGAAGCTTATTTGATGGGCGGGTTTGGTTGGTTGTGCGGTGGGCTCCTTTCCGTCTTCTTACCTTGGTCTCCCTCTTGGAGGTAACTTGAGATGAGAGCTATTTCTTTTTGGGATGCCCCATTGAGAAGATTAGTGTTTTCAAAGCGTAAGGCGTACTCTAAGGCGACAAGTCTCTTGATCGCCTTGAGGCAAGAGGTGACAAAAAAGCGTTGCCTGAATGAAGCAAGGTGCACTTAATAAAACACTAAATAAATATTTTATGTAACTATTTTGAAGGTAACAAATAATAAAAAGTCAATTTTGAAAACATAAAAATTTGAATAAAACTATCTTATGTTTGAATAACATTAGGAAAAGAGTAATTATATTCCAGAAAAAAGCGTCGCCTAAATGAAGCAAGACGCACTTAATAAAACATTAAATAAACATTATATATAACTATTTTGAAGGTAACAAATAATAAAAAGTCAATTTTGAAAACATAATTTGAATAAAACTATCTTATGTTTAAATAACGTTAGAAAAAAGTGATTACATTCCAGAAAGGAAAGTTGAAAGTTTATTTTGTAATAGTATAAATAGATGGTTTTACTGCATATGCCTATAATTTGAAGAAATGAAGCTTCGAACATGCCATCTGTCAGTCATGGAAGAAGATATAGCTAGCAATTAAATTTACTAGGAGAAAAATGCCATATGTCGTAACTCATGACTGCGTGCAACATGCAATTTAATGCATATATCTTTACTACTTTTTATTCTTCAGTCTCTCTCTCTTCTACTTCTTATTCTTTCAAACCCTTTTTTCTTCTACTTCTCGTCAGACTCTTCTTTTTCTACTTCTTAACCTTCTTCTTCTCCGTTCTCATCCTTATGTTCTTCTCATTCTTCTTCCCAAAGCTTTTAGACTCTACTTATTCTTCATTTTTGTATTATTATTCTCCCAACTCTTTTATTTCTCATGTTAAAAGTGTTCTTTGTTGCTTTTCTTTTCTAAATAAAAAATAACAGAACACATTATTTAGAATAGACACTTGCCTCCATTTGTGGCAATGGCGCAAAAGGCAAAGTATGGTGCACCAAGGCGAGTGCCCCGTTGAAGGCAGTCGCCTTGTATACCTTCAAGGTGCTAAGGCTTCATCTCGCCTCTCGCCATAGGTGAGCGCCTAAGGTCACCTTAACAACACCGGAGAAGATAAGGAAGAGGCTTACCTCGTGGAAGGAAAGTTTCTTATCCAAAGCTGGGAGATTGACGTTGATTAGGTCGACAATGAGTGAAATTCTTATTTATTACTTTTCTCTTTTTTTGGTGCACCTGTCTCGATTTGTTAGGGCGTTGAGAAGCTCATGAGAGACTTTCTCTGAGAAGGGGTGGAGGAAGAGAGGGTCTCATTTGGTTAGTTGGGAAGTTGTGAGGAAGCCAGTGAATTGTGGGGGGTTGGAGCTTGAAATTTAAGATTACGCAACAAAGCTCTGTTGGTTAAATGGTTTCGGCATTTTGCCCTTGAGCTCGAATCCTTGTGGCAGAGGATTATTATGAGTAAGCACAGTCCCCATCCCTATGAATGTGTGGCGAAAGGGGTTAAAGGTTCACATCAAAATCTTTGGAAGGATATTTCTCTTCAGCTCCCTTTCTTTCCCTATATTTTTTTTTTTTTTTTTTTGGGGGAAGGTAAGGATATGTATTTTTGGGAAGATCTTTGGGTGGGGGATAGACACCTCTCTTTTGCATTTCCCCAATTGTATCATTTAATTCTCATTTAAAAACTATTGTGTGTCGGATTTTTTTATTTGGTTGGGGAACTCTGATTCTTTCTCTTTTGGTTTTCATCGTTTGTTGTCTAATAGGGAAACGATGGAGGTGGCCTCTCTCCTGTCTTTAATTGAGGGTTTTAATTTCAAACTTGGGAGATGGGATGTTTGTATTTGGAGTCCTAGTCCTTTAGTGGGCTTCTCTTGTAAGTCTTTCTTTAGGATTTTATTGGATCCCTCTCCTGTTGTTGAGTTGGTTTTTGATGTTTTGTGGAGGATTAAGATTCCAAAGAAAGTCAAGTTCTTTTCTTGGAAAGTTTTGCTCGGTCGTGTGGACACGATAGATAGGCTCCTAGCATAGCATCCCTTGGTTCTTTAAAGCGGCAAGGGAATTTAGGGACTAGTTCCATCTATCCAGGGGTATAGATTGTTCTTACCGACGATAAATCTCCTCCAAAAAGGGTTCTTTCATGAATCTCCAACCCCATCTAGCTAAGAGGCTAGAGGTCATATTCTGGTTCATTGAATTGTAACCACCATCTTGAGAGGCTCCTTTCTTGACGAAGTCTGTAATCAAAGTTCATCTAGTTAGGGTACAGGCAGTTCAATTTGGCTTGGTGATTGGGCAAAATCAGAGTCGAATTGACAATTCGGTGAAGGAAACATAAAAAATAGAAACCAAACCACTTACAAGGGAAATCACGCTGAACGAACAACTTAGACCAGCGGTTTGGTTGGTTTGGCTTGCAGTTCGTTGATTACTTGTGTGCACAATCATGGTTTTTTTAGTTCTTTAATTTTTTATTTTTTAACAGCACGCATATTGGGATGGGCCCAAGGCTCATGCACAAGGGGTTGGACAGAATCAAAGTGTACTAAAATCTTGCCATTCCTTAGGCTCGCACTCATGGCTTGGTGGATACCAATTCCACTTTCACGCGAACCAGACCGATAATATTATTTGAAATAAATCTTGAATCTTATATATATATATATGGTTTTTCTGATTTTTTTTTTGCCAAACACAAATTCAATCGAAGATTTTCAACTCGACCCAACAAGCAACCTCTTAATAACTTTTCTAGGGCATTTGGATATGGATAGGAAACAGTTGGGGATGTTGAGAACACTGCATTAGGAAGGGTAATTCTACCCCTTGCTTATTGGTATCAATATCAATAAGGAGGAGGTTGATAGTTGGGCTAGTGCATTCCGTTGCTCCTCAGGCTTGCTTCCTATAGACTATCTTGGATTCTCTTTGGGGGAAATCATCACAAACAGTCATTTTGAGACCCCTTGATCTGCAGTCCAAAATGGATATGTGGAGATGCCTTTTGCTATCAAAAGGTGGAAGAGATACCCTTGCTTAGTCAGTCCTCAATAGTCTTCCCATATATCTATTCTCTCTTCTAAAGGCCCCAAAGAATGTTGTTAAAAGTATGGAGAAGATATTGGATACTTAGTTAAATGGGAGTGGACTACTTTACTAGCTTCTTTGGGTGTTTTGGGTGTGGGATCTCTTGGGCATCGAAATACACAATATTTTAGTGTGTTCGAGAGTTTTACTCGATTCAAAGCTGGTTGTGGTCAAAGAATTCTCTTTTGGGCTATTTCACAATCCTCGTCATCTTTTATAATAATTACAACTAGAGGTGTTATGTAGTGGCCAAATCATTTCACTCTTATATGCTTTCTATTTATATTCTCGGAAAAATCTCCAAAATAAGTCTCCTTGAAGCTTGTGAGGATGTCTCATTTAATGCTAGAGCAACCCTCTCTCAAAAGAGGGGGGGGGGGGGGGTGGTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGTGTATTTTCCATGGCATGTACGAGTTATTTTCATGCAGGAATTGTTTCCTTTGTGGGTCCTGACATTTATTTAAAAAAACAACCATATGACCTAGCCGTGTAAATTGTGCATGGGAATCGTAATGAAATTTTTTAATGGGAACAAACTTTTCATGATCACTATGGGTTGACCTAGTGATCAATAAGGGTCCATGTAAGTAATGAAGGGTTTAGGGGCAATAGGTTGTAGCCATGGTGATCATATACCTAGGATTTAATATTCTGCAAGTTACTTTGACAATCAAAATGTACGACTCCGTGAGAACAATTGAGCAAGCTGGCTTGGACAATCACATATATAAAAAGAAAAAAAAGAAACAGATCTTCGTTGGTAGATGAAAATAAAGAAAATAGGTCGTTGGAATGATTACAAGTGCAGCCAGGAGATTCAAGCTCGCCTATTCATCCAATGCCAGCATGCTTGTTATTTTTGGAATGATTTGAGAAATGCTTTCAATTGGCCGGCGGTCCTTCCAAATGACCTCTCAATGCCCTCCTTTTGGGCCATCCCTTCAAATTGGAGAAGGATCTTTTGTGGAAGAATCTCGTTCATGCCTTTCTTTGGTCTATCTAGGCTTGACTTTAAATGCGGAGCATAAAGCCTTATCATTTTTCAGTTTCCTTCATCAAGAAAATTTAGGAAAGGCTCTACTCATACATCTCTAAATAAGGACCATCGATTCTCATTCAAGCTAACATTGGCCAACCTTCCCATATACTATTTATCCATTTTCCCATCCATCCCCTCAGCATCCATTGAGAGACTCTTTTGGTACTTTTTGTTGATGGGCAACAAATAAAAGGGTTGTTCTTAATCTTGAATGGGAAGAAGTAAGTTAACTTTCGGAGAAGGAGGCTTATGGATTGTTAACCTAAAATGGAATAATATATCCTTGTTGGCTAAATGGATTTGGAGATTTCATAAAGAGAAATCCACCCTGTGGAGGAAATTTATTATTTCACACACCACTTGCAATGTTGATAATGTTATTGGTATTCTTGATTTATGGATTGCTATTATCTTCGATGGGAGAATTGGGCTGTAAAGATCTATCTAAGCATTTAGAAAGAATTATACCGCAAAAGGGTGAAGTTCTTTATAGGGGAGTCAAGCTACTCATGATGTCTTAATACTTGCGACAACCTTCAAAGGCAATCTCCTTGGATATCCAAGTCTCCTAACTGCTGCATTTTGTGCCAAGTAAATGGGGATTTGCATAATCATCTCTTGTTTTGGTGCAAACAAGCCAAAATCTTTAGGACTTTATTTGTCAAGAGTTTCGGTGGCAGATCGCCTTTCCTTTTGATGTTAGGAACATTCTCCCTCTTGTTTTCAGTGGAGACCTTTTCAAGAAGAAGAAGAAGATTCTGAACCTCATTTGGCCTTTCTTGTGGTCTTACTGGTTGGAACGCAACTCTAGTATCCTCATAGATAAGGAACAAGACCTCCAATCTTATTTCACATCTATTAAATATTTATCCTTTAATTCCAATTAAATTGAGCTCACCCTTCGTAGTTATAGTTTATCAAATCTTATGACCAATTGGAGATGTTTTTTTGTAATCCATTGGTTAGGATCTCACATTTTGTAATTTCATTTAGTCAATATAAGTTACTGTTTCCTATAAAAAGAAAACCAACATGTTTTGAAATATCCTTGGAAGAACTTAAATCAACCGAACTATGGGGAAGAGCAGCCATAATAGGGAAAGGCTTCATTGAGATCACCTCGGAGATAATACTAATCCATGACAGAAAATAGTATTTGGGAGTATTCCAAATAGTGTTCATTAGAGACAAAATAGTATAGTAACTTTTGACCTATAGGTTTTTATAATATGATCTCTACCAATCTCAAACTGGAAGAGTCTGATGGGCTGGTATGTCGTTTTAATTGAATGTTTAATGCTTTGAAGATATGTAATAAACGCCCTTTTTATCTAAATAGTATTTTCAGTTCCATCATATGTAAATCACTAAAAAGAAGTTCCATTGCGAGTATGCTTTCTAAAACCCACTTCCAATGTAATGTAACTATACTAGACGCACAAATTCTTCCAACTATCCTAAACTCTCCTTTGGCGATTGTAGTCAAGTTACTTAAAATATATCTTCTCAAGATTCGTTTTAGTTCACAAACTGCATCAACATCTTTTCTTGCTTTTAACTTTAAGTAAACTTACTCCACCTTTTTGTAACTTAGAGGTAACTATAGCATATCAATCCTCATGTCACACTGGAGGAACTTCTTTTAATTACTCAGTCACATATAGGAATTTTCTTGTAACCTATTTCATCAATGAATGAATAGAGTTCTTGGGGACGTGGAGAAATCTAGAGAGGATGTTTGGGAGTTAGTGAGGTTTAATGCTTCCGTTTGGGCGCCGGTTACTAGACCATTTTGTAATTATGATATCGGACTGGTTCTTTTGGACTGGAGTCCCTTCTGTAGTTCATGTTGGGCTCTTTTTTTGGGGCTTATTTTTGTAACCTTGTACTCTTTCATTTTTTCAATGGAAGTTTGGTAAAAAAAAAAAAAGGAAAGAAAAGAAAAGAAAAAAGAGAAAAGTTTCGCACTGTTTGGATTGGCCTTTAATAAATTTTGTAGTAGTTTGTTAACATTCCCTTGTCCTTGGCTGTGGTGTCGGAAACTGTCCCCCTTTTTTGTGCTGTCCTTTGAAAATTGTATTTTTAACATGTTTGATGAAAAGAAACATAGTCTGCTACAGATGTTGAGCAATATTAATATTTGTTGGGTATATGCAGGCCTGAATCTGGTCGTACTGCTAGCTCCAGCGTGGCCAACCCTTTTCCTGGGTAAGTTCTAACTGGACATTGCTTTCGGCATGAAATTTTTACATTCAATAGTGGAGTAGCTGGGTTTTTCTTTTATTATTATTATTATTATTATTATTATTATTATTAAAATTCTAGTTAAGTTCTGGGATTGTTTTACTGCCTTCTAGTTGGATTGGTTTTGAAGTCATTTGTCCTTGACTTCTTGGTTACTCGTTTCTCTGATTTTCTTAGGGGTGTTAGAACTGAGAGTTACATCTTTTAGTTAGAACTGAGAGTTATATCTTTTCTACCTGTTCGGAAGGGTGGAAGACAAGCTAATAAGTTCTTTCCTTTTTTTTCCCTAGTAAAAATATTTTTTTGTTAGAAAATTATCTGGTAAGATAATATTTAATACAGTTTTTAGAAAAAGTGGATAAAAGATGTTAGTGATAGTAGTGCAATGCTTTTGTGTGTGTTTTTAAATTAAATCAACTGTTTAAATATGCCTGAATTGTTTTAAATCTTTTATTATTATTTTTCCTTTTTAATTAGAAACAAGACAAAATAAAATATATTAATGAAAAGAGAACATAACCTAAAGGTCTACAGGTACGGGATGAGGTGTCCCTAAGCCTCATTTGAGGAATTGGCAAAAGCCCTCCAATGTGTATTACAATAAGGATTGTGCAAAGCGCTCCATGCAGATGCAGTAAGCTGTACATTTTCACCAAGTGTCAATAAGGATTTTTGTGTCTAATAGGTTCTTGACCTATTCAATAGTTGCCTAAAATTCACGGATCTACTAGCATACAAAATTGAAAGTTTAGGGTTCCATTAGATTAAAATTAAAATTTATATCTATTAGAACATAAACCTTCTTTAAAAGTTTGATTTTGCTAGACATTTATTTGACAAAGAAAGCAATCTAGGTAGGATATTTGATTTTTAAAACTGGATGAGTTTGAGGCATTCTTGAAAGTAGTCAGTTGAGGTATGCCCTTTGAAGGGTGCTTTTTTTTTCTTTTTCTTTTTTTGGGATAGGATCGAATGGGTTGCTGGTTTAAATCTCAACTCATGTATTTATATTTGTTTTATTCTTATATTTTGGTTTTAAAAAGGAGTGATGTTATATGTATGGTGGCTCAGCTTCTGTGGCCAAGTCTTTAAAAATGTACGTCATGAGTTGGAAATGGAGTAAGATGAATGAACTTTGCTTGAATTGGTTGAACTTGTTTTCATTGCTGTCTAGTTTTACTAAAGTTCTTCGGTTTTGTATAGTCCAAGCCATCGTGGAGGGCTGAGGAATGGCCGTGGCCGTGGTCGAGGTGGCTGGAGCCGTGGTCTAGGTCTAGGTCTAGGAGGAGGAGGAGGCCGTGGCCGAGGGCGTGGTCGTGGGCGTGGCCAGGGAAGAAAGAAACCTGTGGAGAAGTCCTCAGATGAACTTGACAAGGAGCTTGAAAACTACCATGCAGAAGCCATGCAAACCTGA

mRNA sequence

ATGGCTACTCCTTTGGATATGTCACTAGAGGACGTGATAAAGAAGAATAACCGTGAGAAGCTTAGAGCACGAGGTAGGGCCCGTCGTGGGCGTGGAGCAGGTGGGTCTTTTAATGGTGGAAGAGGAGTAGTGATAGGGTCAGTTCGTAGAGGTCCTCTTGGCATAAATGCGCGGGCATCTGCTTACTCAATTCGCAAGCCCCCACGCAGAATGAAGAATGTTCAATGGAAGCATGATTTATTCGAAGATAGTCTTAGAGCTTCAGGGATTTCTGGAATTGAAATTGGCACAAAGTTGTACGTTTCCAACTTGGATTATGGGGTGACCAAAGAAGATATAAGGGAGTTGTTCTCTGAGATTGGAGACCTGAAAAGATTTGCAATTCATTATGACAAAAATGGTCGTCCAAGTGGCTCAGCAGAGGTGGTATATACTCGTAGAAGTGATGCATTTGCTGCTCTGAAGCGCTATAACAATGTGTTATTGGATGGGAAGCCAATGAAGATTGAAATGCTTGGTGATAATGCTGAAATGCCGGTTTCTGCACGTATAAATGTTACTGGAGTGAATGGAAGAAGCAGGAGGACAGTTGTTCTAACGCCTGAATCTGGTCGTACTGCTAGCTCCAGCGTGGCCAACCCTTTTCCTGGTCCAAGCCATCGTGGAGGGCTGAGGAATGGCCGTGGCCGTGGTCGAGGTGGCTGGAGCCGTGGTCTAGGTCTAGGTCTAGGAGGAGGAGGAGGCCGTGGCCGAGGGCGTGGTCGTGGGCGTGGCCAGGGAAGAAAGAAACCTGTGGAGAAGTCCTCAGATGAACTTGACAAGGAGCTTGAAAACTACCATGCAGAAGCCATGCAAACCTGA

Coding sequence (CDS)

ATGGCTACTCCTTTGGATATGTCACTAGAGGACGTGATAAAGAAGAATAACCGTGAGAAGCTTAGAGCACGAGGTAGGGCCCGTCGTGGGCGTGGAGCAGGTGGGTCTTTTAATGGTGGAAGAGGAGTAGTGATAGGGTCAGTTCGTAGAGGTCCTCTTGGCATAAATGCGCGGGCATCTGCTTACTCAATTCGCAAGCCCCCACGCAGAATGAAGAATGTTCAATGGAAGCATGATTTATTCGAAGATAGTCTTAGAGCTTCAGGGATTTCTGGAATTGAAATTGGCACAAAGTTGTACGTTTCCAACTTGGATTATGGGGTGACCAAAGAAGATATAAGGGAGTTGTTCTCTGAGATTGGAGACCTGAAAAGATTTGCAATTCATTATGACAAAAATGGTCGTCCAAGTGGCTCAGCAGAGGTGGTATATACTCGTAGAAGTGATGCATTTGCTGCTCTGAAGCGCTATAACAATGTGTTATTGGATGGGAAGCCAATGAAGATTGAAATGCTTGGTGATAATGCTGAAATGCCGGTTTCTGCACGTATAAATGTTACTGGAGTGAATGGAAGAAGCAGGAGGACAGTTGTTCTAACGCCTGAATCTGGTCGTACTGCTAGCTCCAGCGTGGCCAACCCTTTTCCTGGTCCAAGCCATCGTGGAGGGCTGAGGAATGGCCGTGGCCGTGGTCGAGGTGGCTGGAGCCGTGGTCTAGGTCTAGGTCTAGGAGGAGGAGGAGGCCGTGGCCGAGGGCGTGGTCGTGGGCGTGGCCAGGGAAGAAAGAAACCTGTGGAGAAGTCCTCAGATGAACTTGACAAGGAGCTTGAAAACTACCATGCAGAAGCCATGCAAACCTGA

Protein sequence

MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARASAYSIRKPPRRMKNVQWKHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARINVTGVNGRSRRTVVLTPESGRTASSSVANPFPGPSHRGGLRNGRGRGRGGWSRGLGLGLGGGGGRGRGRGRGRGQGRKKPVEKSSDELDKELENYHAEAMQT

Homology

[Close]

BLAST of Lsi05G003560 vs. Swiss-Prot
Match: THO4D_ARATH (THO complex subunit 4D OS=Arabidopsis thaliana GN=ALY4 PE=1 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 5.0e-71
Identity = 161/295 (54.58%), Postives = 209/295 (70.85%), Query Frame = 1


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRAR-RGRGAGGSFNGGRGVVIGSVRRGPLGINARA 60
           M+  L+M+L++++K+    +   RG +R RGRG GG   GGRG   G  RRGPL +NAR 
Sbjct: 1   MSGALNMTLDEIVKRGKTARSGGRGISRGRGRGRGG---GGRGA--GPARRGPLAVNARP 60

Query: 61  SAYSIRKPPRRMKNVQWKHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSE 120
           S+++I KP RR++++ W+  LFED LRA+G SG+E+GT+L+V+NLD GVT EDIRELFSE
Sbjct: 61  SSFTINKPVRRVRSLPWQSGLFEDGLRAAGASGVEVGTRLHVTNLDQGVTNEDIRELFSE 120

Query: 121 IGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDN--AE 180
           IG+++R+AIHYDKNGRPSG+AEVVY RRSDAF ALK+YNNVLLDG+PM++E+LG N  +E
Sbjct: 121 IGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALKKYNNVLLDGRPMRLEILGGNNSSE 180

Query: 181 MPVSARINV--TGVNGRSRRTVVLTPESGRTA----SSSVANPFPGPSHRGGLRNGRGRG 240
            P+S R+NV  TG+NGR +RTVV+    G             P P  S R  + N +G G
Sbjct: 181 APLSGRVNVNVTGLNGRLKRTVVIQQGGGGRGRVRGGRGGRGPAPTVSRRLPIHNQQGGG 240

Query: 241 RGGWSRGLGLGLGGGGGRGRGRGRGRGQGRKKPVEKSSDELDKELENYHAEAMQT 287
             G   G      G GGRGRG GRG G   KKPVEKS+ +LDK+LE+YHA+AM T
Sbjct: 241 MRGGRGGFRARGRGNGGRGRGGGRGNG---KKPVEKSAADLDKDLESYHADAMNT 287

[Close]

BLAST of Lsi05G003560 vs. Swiss-Prot
Match: THO4C_ARATH (THO complex subunit 4C OS=Arabidopsis thaliana GN=ALY3 PE=1 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 7.5e-67
Identity = 164/312 (52.56%), Postives = 215/312 (68.91%), Query Frame = 1


Query: 1   MATPLDMSLEDVIKKNNREKLRA-----RGRARR-GRGAGGS---FNGGRGVVIGSVRRG 60
           M+  L+M+L++++KK+  E+  A     +G +R+ GRG GG      GGRG   G VRRG
Sbjct: 1   MSDALNMTLDEIVKKSKSERSAAARSGGKGVSRKSGRGRGGPNGVVGGGRGG--GPVRRG 60

Query: 61  PLGINAR-ASAYSIRKPPRRMKNVQWKH--DLFEDSLRASGISGIEIGTKLYVSNLDYGV 120
           PL +N R +S++SI K  RR +++ W++  DL+E++LRA G+SG+E+GT +Y++NLD GV
Sbjct: 61  PLAVNTRPSSSFSINKLARRKRSLPWQNQNDLYEETLRAVGVSGVEVGTTVYITNLDQGV 120

Query: 121 TKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMK 180
           T EDIREL++EIG+LKR+AIHYDKNGRPSGSAEVVY RRSDA  A+++YNNVLLDG+PMK
Sbjct: 121 TNEDIRELYAEIGELKRYAIHYDKNGRPSGSAEVVYMRRSDAIQAMRKYNNVLLDGRPMK 180

Query: 181 IEMLGDNAE-MPVSARINVTGVNGRSRRTVVLTPESGRTASSSVANPFPGPSHRGGLRNG 240
           +E+LG N E  PV+AR+NVTG+NGR +R+V                 F G   RGG R G
Sbjct: 181 LEILGGNTESAPVAARVNVTGLNGRMKRSV-----------------FIGQGVRGG-RVG 240

Query: 241 RGRGRGGWSR----------GLGLGLGGGGGRGRGRGRGR-----GQGRKKPVEKSSDEL 285
           RGRG G   R          G+  G GG  GRGRG G GR     G+G KKPVEKS+ +L
Sbjct: 241 RGRGSGPSGRRLPLQQNQQGGVTAGRGGFRGRGRGNGGGRGNKSGGRGGKKPVEKSAADL 292

[Close]

BLAST of Lsi05G003560 vs. Swiss-Prot
Match: THO4B_ARATH (THO complex subunit 4B OS=Arabidopsis thaliana GN=ALY2 PE=1 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 6.8e-44
Identity = 135/304 (44.41%), Postives = 176/304 (57.89%), Query Frame = 1


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS 60
           M+  LDMSL+D+IK +NR+   +RGR   G G      GG G   G  RR    + AR +
Sbjct: 1   MSGGLDMSLDDIIK-SNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTA 60

Query: 61  AYSIRKPPRRMKNVQWKHDLF--EDSLRAS----------GISGIEIGTKLYVSNLDYGV 120
            YS     ++  +  W++D+F  + S+ A+          G S IE GTKLY+SNLDYGV
Sbjct: 61  PYSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGV 120

Query: 121 TKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMK 180
           + EDI+ELFSE+GDLKR+ IHYD++GR  G+AEVV++RR DA AA+KRYNNV LDGK MK
Sbjct: 121 SNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMK 180

Query: 181 IEMLGDNAEMPVSARINVTGVNGRSRRTVVLTPESGRTASSSVANPFPGPSHRGGLRNGR 240
           IE++G N   P    +    +           P        +    F G  +     N R
Sbjct: 181 IEIVGTNLSAPALPILATAQI-----------PFPTNGILGNFNENFNGNFNGNFNGNFR 240

Query: 241 GRGRGGW-SRGLGLGLGGG---GGRG-RGRGRGRGQ-GRKKPVEKSSDELDKELENYHAE 287
           GRGRGG+  R  G G GGG   GGRG RGRG GRG  GR +    S+++LD EL+ YH E
Sbjct: 241 GRGRGGFMGRPRGGGFGGGNFRGGRGARGRG-GRGSGGRGRDENVSAEDLDAELDKYHKE 291

[Close]

BLAST of Lsi05G003560 vs. Swiss-Prot
Match: THO4A_ARATH (THO complex subunit 4A OS=Arabidopsis thaliana GN=ALY1 PE=1 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.3e-42
Identity = 123/291 (42.27%), Postives = 164/291 (56.36%), Query Frame = 1


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS 60
           M+T LDMSL+D+I KN +    +RG A   RG G     G      + R  P   + R++
Sbjct: 1   MSTGLDMSLDDMIAKNRK----SRGGAGPARGTGSGSGPGP-----TRRNNPNRKSTRSA 60

Query: 61  AYSIRKPPRRMKNVQWKHDLF----EDSLRASGISGIEIGTKLYVSNLDYGVTKEDIREL 120
            Y   K P       W HD+F    ED       +GIE GTKLY+SNLDYGV  EDI+EL
Sbjct: 61  PYQSAKAPEST----WGHDMFSDRSEDHRSGRSSAGIETGTKLYISNLDYGVMNEDIKEL 120

Query: 121 FSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNA 180
           F+E+G+LKR+ +H+D++GR  G+AEVVY+RR DA AA+K+YN+V LDGKPMKIE++G N 
Sbjct: 121 FAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNL 180

Query: 181 EMPVSARINVTGVNGRSRRTVVLTPESGRTASSSVANPFPGPSHRGGLRNGRGRGRGGWS 240
           +                            TA++    P  G S+    R G+  GRGG  
Sbjct: 181 Q----------------------------TAAAPSGRPANGNSNGAPWRGGQ--GRGGQQ 240

Query: 241 RGLGLGLGGGGGRGRGRGRGRGQGRKKPVEK-SSDELDKELENYHAEAMQT 287
           RG G G GG GG GRGR  G+G     P EK S+++LD +L+ YH+  M+T
Sbjct: 241 RGGGRGGGGRGGGGRGRRPGKG-----PAEKISAEDLDADLDKYHSGDMET 243

[Close]

BLAST of Lsi05G003560 vs. Swiss-Prot
Match: THOC4_TAEGU (THO complex subunit 4 OS=Taeniopygia guttata GN=ALYREF PE=2 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 5.8e-35
Identity = 108/290 (37.24%), Postives = 150/290 (51.72%), Query Frame = 1


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGR----GVVIGSVRRGPLG-- 60
           MA  +DMSL+D+IK N  ++  +RG  R GRG GG+  GG     GV  G    GP+   
Sbjct: 1   MADKMDMSLDDIIKLNRSQRGASRG-GRGGRGRGGTARGGGPGRGGVGGGRAGGGPVRNR 60

Query: 61  -INARASAYSIRKPPRRMKNV--QWKHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKE 120
            + AR    +   P  R K +  +W+HDLF+    A   +G+E G KL VSNLD+GV+  
Sbjct: 61  PVMARGGGRNRPAPYSRPKQLPEKWQHDLFDSGFGAG--AGVETGGKLLVSNLDFGVSDA 120

Query: 121 DIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEM 180
           DI+ELF+E G LK+ A+HYD++GR  G+A+V + R++DA  A+K+YN V LDG+PM I++
Sbjct: 121 DIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 180

Query: 181 LGDNAEMPVSARINVTGVNGRSRRTVVLTPESGRTASSSVANPFPGPSHRGGLRNGRGRG 240
                         VT      RR        G T +  V   F G  +R G R G    
Sbjct: 181 --------------VTSQIDTQRRPAQSVNRGGMTRNRGVLGGFGGGGNRRGTRGG---- 240

Query: 241 RGGWSRGLGLGLGGGGGRGRGRGRGRGQGRKKPVEKSSDELDKELENYHA 282
                                RGRGRG GR    + S++ELD +L+ Y+A
Sbjct: 241 --------------------NRGRGRGAGRTSKQQLSAEELDAQLDAYNA 249

[Close]

BLAST of Lsi05G003560 vs. TrEMBL
Match: A0A0A0L717_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G302100 PE=4 SV=1)

HSP 1 Score: 380.9 bits (977), Expect = 1.3e-102
Identity = 192/200 (96.00%), Postives = 197/200 (98.50%), Query Frame = 1


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS 60
           M TPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS
Sbjct: 1   MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS 60

Query: 61  AYSIRKPPRRMKNVQWKHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI 120
           AYSIRKPP RMKNVQW+HDLFEDSLRASGISGI+IGTKLYVSNLDYGVTKEDI+ELFSEI
Sbjct: 61  AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFSEI 120

Query: 121 GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 180
           GD+KRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV
Sbjct: 121 GDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 180

Query: 181 SARINVTGVNGRSRRTVVLT 201
           SARINVTG NGR+RRTVVLT
Sbjct: 181 SARINVTGTNGRNRRTVVLT 200

[Close]

BLAST of Lsi05G003560 vs. TrEMBL
Match: A0A067EIQ9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022827mg PE=4 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 7.0e-96
Identity = 202/292 (69.18%), Postives = 237/292 (81.16%), Query Frame = 1


Query: 1   MATPLDMSLEDVIKKNNR-EKLRARGRARRGRGAG----GSFNGGRGVVIGSVRRGPLGI 60
           MAT +DMSL+D+IK   + E+ R +GRARRGRG G    GS +GGR  + G+ RRGPL  
Sbjct: 1   MATHVDMSLDDIIKSRKKSERERGQGRARRGRGRGRGPSGSVSGGR--MTGAARRGPLS- 60

Query: 61  NARASAYSIRKPPRRMKNVQWKHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRE 120
           NAR S+Y+I K  RR +N  W+HDLFEDSLRA+GISGIE+GTKLYVSNL  GVT +DIRE
Sbjct: 61  NARPSSYTIAKSFRRTRNFPWQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRE 120

Query: 121 LFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDN 180
           LFSEIG+LKR+AIH+DKNGRPSGSAEVVY RRSDAFAALKRYNNVLLDGKPMKIE++G N
Sbjct: 121 LFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTN 180

Query: 181 AEMPVSARINVTGVNGRSRRTVVLTPESGRTASSSVANPFPGPSHRGGLR-NGRGRGRG- 240
           AE+P+ AR+NVTGVNGR +RTVV+T  SG    ++  N  PG   RGGLR + +GRGRG 
Sbjct: 181 AEIPLQARVNVTGVNGRRKRTVVMTSGSGNAGGAAAINRGPGQGRRGGLRRSSQGRGRGQ 240

Query: 241 GWSRGLGLGLGGGGGRGRGRGRGRGQGRKKPVEKSSDELDKELENYHAEAMQ 286
           G  RG G G GGGGGRGRGRGRGRGQG+K PV+KS+D+LDKEL+NYHAEAMQ
Sbjct: 241 GQGRGRGRGGGGGGGRGRGRGRGRGQGKKNPVDKSADDLDKELDNYHAEAMQ 289

[Close]

BLAST of Lsi05G003560 vs. TrEMBL
Match: A0A067EA94_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022827mg PE=4 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 1.7e-94
Identity = 202/293 (68.94%), Postives = 237/293 (80.89%), Query Frame = 1


Query: 1   MATPLDMSLEDVIKKNNR-EKLRARGRARRGRGAG----GSFNGGRGVVIGSVRRGPLGI 60
           MAT +DMSL+D+IK   + E+ R +GRARRGRG G    GS +GGR  + G+ RRGPL  
Sbjct: 1   MATHVDMSLDDIIKSRKKSERERGQGRARRGRGRGRGPSGSVSGGR--MTGAARRGPLS- 60

Query: 61  NARASAYSIRKPPRRMKNVQWKHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRE 120
           NAR S+Y+I K  RR +N  W+HDLFEDSLRA+GISGIE+GTKLYVSNL  GVT +DIRE
Sbjct: 61  NARPSSYTIAKSFRRTRNFPWQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRE 120

Query: 121 LFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDN 180
           LFSEIG+LKR+AIH+DKNGRPSGSAEVVY RRSDAFAALKRYNNVLLDGKPMKIE++G N
Sbjct: 121 LFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTN 180

Query: 181 AEMPVSARINVTGVNGRSRRTVVLTPESGRTASSSVANPFPG-PSHRGGL-RNGRGRGRG 240
           AE+P+ AR+NVTGVNGR +RTVV+T  SG    ++  N  PG    RGGL R+ +GRGRG
Sbjct: 181 AEIPLQARVNVTGVNGRRKRTVVMTSGSGNAGGAAAINRGPGSQGRRGGLRRSSQGRGRG 240

Query: 241 -GWSRGLGLGLGGGGGRGRGRGRGRGQGRKKPVEKSSDELDKELENYHAEAMQ 286
            G  RG G G GGGGGRGRGRGRGRGQG+K PV+KS+D+LDKEL+NYHAEAMQ
Sbjct: 241 QGQGRGRGRGGGGGGGRGRGRGRGRGQGKKNPVDKSADDLDKELDNYHAEAMQ 290

[Close]

BLAST of Lsi05G003560 vs. TrEMBL
Match: V4SXP1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012354mg PE=4 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 3.3e-93
Identity = 201/295 (68.14%), Postives = 235/295 (79.66%), Query Frame = 1


Query: 1   MATPLDMSLEDVIKKNNR-EKLRARGRARRGRGAG----GSFNGGRGVVIGSVRRGPLGI 60
           MAT +DMSL+D+IK   + E+ R +GR RRGRG G    GS +GGR  + G+ RRGPL  
Sbjct: 1   MATHVDMSLDDIIKSRKKSERERGQGRVRRGRGRGRGPSGSVSGGR--MTGAARRGPLS- 60

Query: 61  NARASAYSIRKPPRRMKNVQWKHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRE 120
           NAR S+Y+I K  RR +N  W+HDLFEDSLRA+GISGIE+GTKLYVSNL  GVT +DIRE
Sbjct: 61  NARPSSYTIAKSFRRTRNFPWQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRE 120

Query: 121 LFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDN 180
           LFSEIG+LKR+AIH+DKNGRPSGSAEVVY RRSDAFAALKRYNNVLLDGKPMKIE++G N
Sbjct: 121 LFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTN 180

Query: 181 AEMPVSARINVTGVNGRSRRTVVLTPESGRTASSSVANPFPG-PSHRGGLR---NGRGRG 240
           AE+P+ AR+NVTGVNGR +RTVV+T  SG    ++  N  PG    RGGLR    GRGRG
Sbjct: 181 AEIPLQARVNVTGVNGRRKRTVVMTSGSGNAGGAAAINRGPGSQGRRGGLRRSSQGRGRG 240

Query: 241 RG-GWSRGLGLGLGGGGGRGRGRGRGRGQGRKKPVEKSSDELDKELENYHAEAMQ 286
           +G G  RG G G GGGGG GRGRGRGRGQG+K PV+KS+D+LDKEL+NYHAEAMQ
Sbjct: 241 QGQGRGRGRGGGGGGGGGGGRGRGRGRGQGKKNPVDKSADDLDKELDNYHAEAMQ 292

[Close]

BLAST of Lsi05G003560 vs. TrEMBL
Match: D7TSN8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g01020 PE=4 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 5.6e-93
Identity = 192/288 (66.67%), Postives = 225/288 (78.12%), Query Frame = 1


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRG-AGGSFNGGRGVVIGSVRRGPLGINARA 60
           MAT LDMSL+D+IK++N E++R RGRARRGRG  GGSFNGGR   I   RRGPL +NAR 
Sbjct: 1   MATSLDMSLDDIIKRSNSERVRGRGRARRGRGPIGGSFNGGRMSGI-PPRRGPLRVNARP 60

Query: 61  SAYSIRKPPRRMKNVQWKHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSE 120
           S+Y+I K  RR K + W+HDLFEDSLRA+G+ G+E GTKLY+SNLDYGVT EDIRELFSE
Sbjct: 61  SSYAIAKSSRRTK-IPWQHDLFEDSLRAAGLPGLEAGTKLYISNLDYGVTNEDIRELFSE 120

Query: 121 IGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMP 180
           IGD+KR+A+HY+KNGRPSGSAEVVYTRRSDAFAA+KRYNNVLLDGKPMKIE++G +++MP
Sbjct: 121 IGDIKRYAVHYEKNGRPSGSAEVVYTRRSDAFAAVKRYNNVLLDGKPMKIEIIGSDSDMP 180

Query: 181 VSARINVT-GVNGRSRRTVVLTPESGRTASSSVANPFPGPSHRGGLRNGRGRGRGGWSRG 240
           VSAR+NV  GVNG+ RRTVV+TP  G    S+  N       RGGL NGRGRGR G    
Sbjct: 181 VSARVNVIGGVNGKRRRTVVMTPGVGHARGSTAINRSSSRRGRGGLSNGRGRGRAG---- 240

Query: 241 LGLGLGGGGGRGRGRGRGRGQGRKKPVEKSSDELDKELENYHAEAMQT 287
                         RGRGRG+GRK+PVEKS+ ELDKEL+NYHAEAM T
Sbjct: 241 -------------SRGRGRGRGRKQPVEKSAVELDKELDNYHAEAMHT 269

[Close]

BLAST of Lsi05G003560 vs. TAIR10
Match: AT5G37720.1 (AT5G37720.1 ALWAYS EARLY 4)

HSP 1 Score: 269.2 bits (687), Expect = 2.8e-72
Identity = 161/295 (54.58%), Postives = 209/295 (70.85%), Query Frame = 1


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRAR-RGRGAGGSFNGGRGVVIGSVRRGPLGINARA 60
           M+  L+M+L++++K+    +   RG +R RGRG GG   GGRG   G  RRGPL +NAR 
Sbjct: 1   MSGALNMTLDEIVKRGKTARSGGRGISRGRGRGRGG---GGRGA--GPARRGPLAVNARP 60

Query: 61  SAYSIRKPPRRMKNVQWKHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSE 120
           S+++I KP RR++++ W+  LFED LRA+G SG+E+GT+L+V+NLD GVT EDIRELFSE
Sbjct: 61  SSFTINKPVRRVRSLPWQSGLFEDGLRAAGASGVEVGTRLHVTNLDQGVTNEDIRELFSE 120

Query: 121 IGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDN--AE 180
           IG+++R+AIHYDKNGRPSG+AEVVY RRSDAF ALK+YNNVLLDG+PM++E+LG N  +E
Sbjct: 121 IGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALKKYNNVLLDGRPMRLEILGGNNSSE 180

Query: 181 MPVSARINV--TGVNGRSRRTVVLTPESGRTA----SSSVANPFPGPSHRGGLRNGRGRG 240
            P+S R+NV  TG+NGR +RTVV+    G             P P  S R  + N +G G
Sbjct: 181 APLSGRVNVNVTGLNGRLKRTVVIQQGGGGRGRVRGGRGGRGPAPTVSRRLPIHNQQGGG 240

Query: 241 RGGWSRGLGLGLGGGGGRGRGRGRGRGQGRKKPVEKSSDELDKELENYHAEAMQT 287
             G   G      G GGRGRG GRG G   KKPVEKS+ +LDK+LE+YHA+AM T
Sbjct: 241 MRGGRGGFRARGRGNGGRGRGGGRGNG---KKPVEKSAADLDKDLESYHADAMNT 287

[Close]

BLAST of Lsi05G003560 vs. TAIR10
Match: AT1G66260.1 (AT1G66260.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 255.4 bits (651), Expect = 4.2e-68
Identity = 164/312 (52.56%), Postives = 215/312 (68.91%), Query Frame = 1


Query: 1   MATPLDMSLEDVIKKNNREKLRA-----RGRARR-GRGAGGS---FNGGRGVVIGSVRRG 60
           M+  L+M+L++++KK+  E+  A     +G +R+ GRG GG      GGRG   G VRRG
Sbjct: 1   MSDALNMTLDEIVKKSKSERSAAARSGGKGVSRKSGRGRGGPNGVVGGGRGG--GPVRRG 60

Query: 61  PLGINAR-ASAYSIRKPPRRMKNVQWKH--DLFEDSLRASGISGIEIGTKLYVSNLDYGV 120
           PL +N R +S++SI K  RR +++ W++  DL+E++LRA G+SG+E+GT +Y++NLD GV
Sbjct: 61  PLAVNTRPSSSFSINKLARRKRSLPWQNQNDLYEETLRAVGVSGVEVGTTVYITNLDQGV 120

Query: 121 TKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMK 180
           T EDIREL++EIG+LKR+AIHYDKNGRPSGSAEVVY RRSDA  A+++YNNVLLDG+PMK
Sbjct: 121 TNEDIRELYAEIGELKRYAIHYDKNGRPSGSAEVVYMRRSDAIQAMRKYNNVLLDGRPMK 180

Query: 181 IEMLGDNAE-MPVSARINVTGVNGRSRRTVVLTPESGRTASSSVANPFPGPSHRGGLRNG 240
           +E+LG N E  PV+AR+NVTG+NGR +R+V                 F G   RGG R G
Sbjct: 181 LEILGGNTESAPVAARVNVTGLNGRMKRSV-----------------FIGQGVRGG-RVG 240

Query: 241 RGRGRGGWSR----------GLGLGLGGGGGRGRGRGRGR-----GQGRKKPVEKSSDEL 285
           RGRG G   R          G+  G GG  GRGRG G GR     G+G KKPVEKS+ +L
Sbjct: 241 RGRGSGPSGRRLPLQQNQQGGVTAGRGGFRGRGRGNGGGRGNKSGGRGGKKPVEKSAADL 292

[Close]

BLAST of Lsi05G003560 vs. TAIR10
Match: AT5G02530.1 (AT5G02530.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 179.1 bits (453), Expect = 3.9e-45
Identity = 135/304 (44.41%), Postives = 176/304 (57.89%), Query Frame = 1


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS 60
           M+  LDMSL+D+IK +NR+   +RGR   G G      GG G   G  RR    + AR +
Sbjct: 1   MSGGLDMSLDDIIK-SNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTA 60

Query: 61  AYSIRKPPRRMKNVQWKHDLF--EDSLRAS----------GISGIEIGTKLYVSNLDYGV 120
            YS     ++  +  W++D+F  + S+ A+          G S IE GTKLY+SNLDYGV
Sbjct: 61  PYSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGV 120

Query: 121 TKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMK 180
           + EDI+ELFSE+GDLKR+ IHYD++GR  G+AEVV++RR DA AA+KRYNNV LDGK MK
Sbjct: 121 SNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMK 180

Query: 181 IEMLGDNAEMPVSARINVTGVNGRSRRTVVLTPESGRTASSSVANPFPGPSHRGGLRNGR 240
           IE++G N   P    +    +           P        +    F G  +     N R
Sbjct: 181 IEIVGTNLSAPALPILATAQI-----------PFPTNGILGNFNENFNGNFNGNFNGNFR 240

Query: 241 GRGRGGW-SRGLGLGLGGG---GGRG-RGRGRGRGQ-GRKKPVEKSSDELDKELENYHAE 287
           GRGRGG+  R  G G GGG   GGRG RGRG GRG  GR +    S+++LD EL+ YH E
Sbjct: 241 GRGRGGFMGRPRGGGFGGGNFRGGRGARGRG-GRGSGGRGRDENVSAEDLDAELDKYHKE 291

[Close]

BLAST of Lsi05G003560 vs. TAIR10
Match: AT5G59950.5 (AT5G59950.5 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 175.6 bits (444), Expect = 4.3e-44
Identity = 125/291 (42.96%), Postives = 165/291 (56.70%), Query Frame = 1


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS 60
           M+T LDMSL+D+I KN +    +RG A   RG G     G      + R  P   + R++
Sbjct: 1   MSTGLDMSLDDMIAKNRK----SRGGAGPARGTGSGSGPGP-----TRRNNPNRKSTRSA 60

Query: 61  AYSIRKPPRRMKNVQWKHDLF----EDSLRASGISGIEIGTKLYVSNLDYGVTKEDIREL 120
            Y   K P       W HD+F    ED       +GIE GTKLY+SNLDYGV  EDI+EL
Sbjct: 61  PYQSAKAPEST----WGHDMFSDRSEDHRSGRSSAGIETGTKLYISNLDYGVMNEDIKEL 120

Query: 121 FSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNA 180
           F+E+G+LKR+ +H+D++GR  G+AEVVY+RR DA AA+K+YN+V LDGKPMKIE++G N 
Sbjct: 121 FAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNL 180

Query: 181 EMPVSARINVTGVNGRSRRTVVLTPESGRTASSSVANPFPGPSHRGGLRNGRGRGRGGWS 240
           +   +                     SGR A+    N    P  RG      G+GRGG  
Sbjct: 181 QTAAA--------------------PSGRPAN---GNSNGAPWSRG------GQGRGGQQ 240

Query: 241 RGLGLGLGGGGGRGRGRGRGRGQGRKKPVEK-SSDELDKELENYHAEAMQT 287
           RG G G GG GG GRGR  G+G     P EK S+++LD +L+ YH+  M+T
Sbjct: 241 RGGGRGGGGRGGGGRGRRPGKG-----PAEKISAEDLDADLDKYHSGDMET 244

[Close]

BLAST of Lsi05G003560 vs. TAIR10
Match: AT2G23350.1 (AT2G23350.1 poly(A) binding protein 4)

HSP 1 Score: 58.2 bits (139), Expect = 9.9e-09
Identity = 28/76 (36.84%), Postives = 41/76 (53.95%), Query Frame = 1


Query: 96  GTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALK 155
           G  LYV NLD  VT E +RELF+E G +    +  D +G   GS  V ++  S+A   L 
Sbjct: 327 GLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLN 386

Query: 156 RYNNVLLDGKPMKIEM 172
             N  ++ GKP+ + +
Sbjct: 387 EMNGKMVGGKPLYVAL 402

[Close]

BLAST of Lsi05G003560 vs. NCBI nr
Match: gi|659114341|ref|XP_008457020.1| (PREDICTED: THO complex subunit 4D isoform X1 [Cucumis melo])

HSP 1 Score: 513.1 bits (1320), Expect = 3.2e-142
Identity = 269/286 (94.06%), Postives = 276/286 (96.50%), Query Frame = 1


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS 60
           M TPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS
Sbjct: 1   MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS 60

Query: 61  AYSIRKPPRRMKNVQWKHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI 120
           AYSIRKPP RMKNVQW+HDLFEDSLRASGISGI+IGTKLYVSNLDYGVTKEDIRELFSEI
Sbjct: 61  AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIRELFSEI 120

Query: 121 GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 180
           GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV
Sbjct: 121 GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 180

Query: 181 SARINVTGVNGRSRRTVVLTPESGRTASSSVANPFPGPSHRGGLRNGRGRGRGGWSRGLG 240
           SARINVTG NGR+RRTVVLTPESGR A+ +V NPFPGPSHRGGLRN RGRGRG W+RG+G
Sbjct: 181 SARINVTGTNGRNRRTVVLTPESGRNATFNVVNPFPGPSHRGGLRNARGRGRGAWTRGVG 240

Query: 241 LGLGGGGGRGRGRGRGRGQGRKKPVEKSSDELDKELENYHAEAMQT 287
           LG G GGGRGRGRGRGRGQGRKKPVEKSSDELDKELENYHAEAMQT
Sbjct: 241 LG-GSGGGRGRGRGRGRGQGRKKPVEKSSDELDKELENYHAEAMQT 285

[Close]

BLAST of Lsi05G003560 vs. NCBI nr
Match: gi|449456227|ref|XP_004145851.1| (PREDICTED: THO complex subunit 4D [Cucumis sativus])

HSP 1 Score: 511.5 bits (1316), Expect = 9.3e-142
Identity = 267/286 (93.36%), Postives = 275/286 (96.15%), Query Frame = 1


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS 60
           M TPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS
Sbjct: 1   MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS 60

Query: 61  AYSIRKPPRRMKNVQWKHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI 120
           AYSIRKPP RMKNVQW+HDLFEDSLRASGISGI+IGTKLYVSNLDYGVTKEDI+ELFSEI
Sbjct: 61  AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFSEI 120

Query: 121 GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 180
           GD+KRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV
Sbjct: 121 GDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 180

Query: 181 SARINVTGVNGRSRRTVVLTPESGRTASSSVANPFPGPSHRGGLRNGRGRGRGGWSRGLG 240
           SARINVTG NGR+RRTVVLT ESGR A+S+V N FPGPSHRGGLRN RGRGRG WSRG+G
Sbjct: 181 SARINVTGTNGRNRRTVVLTSESGRNATSNVVNSFPGPSHRGGLRNARGRGRGAWSRGVG 240

Query: 241 LGLGGGGGRGRGRGRGRGQGRKKPVEKSSDELDKELENYHAEAMQT 287
           LG G GGGRGRGRGRGRGQGRKKPVEKSSDELDKELENYHAEAMQT
Sbjct: 241 LGGGSGGGRGRGRGRGRGQGRKKPVEKSSDELDKELENYHAEAMQT 286

[Close]

BLAST of Lsi05G003560 vs. NCBI nr
Match: gi|659114343|ref|XP_008457021.1| (PREDICTED: THO complex subunit 4D isoform X2 [Cucumis melo])

HSP 1 Score: 386.7 bits (992), Expect = 3.5e-104
Identity = 201/216 (93.06%), Postives = 208/216 (96.30%), Query Frame = 1


Query: 71  MKNVQWKHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHY 130
           MKNVQW+HDLFEDSLRASGISGI+IGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHY
Sbjct: 1   MKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIRELFSEIGDLKRFAIHY 60

Query: 131 DKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARINVTGVN 190
           DKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARINVTG N
Sbjct: 61  DKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARINVTGTN 120

Query: 191 GRSRRTVVLTPESGRTASSSVANPFPGPSHRGGLRNGRGRGRGGWSRGLGLGLGGGGGRG 250
           GR+RRTVVLTPESGR A+ +V NPFPGPSHRGGLRN RGRGRG W+RG+GLG G GGGRG
Sbjct: 121 GRNRRTVVLTPESGRNATFNVVNPFPGPSHRGGLRNARGRGRGAWTRGVGLG-GSGGGRG 180

Query: 251 RGRGRGRGQGRKKPVEKSSDELDKELENYHAEAMQT 287
           RGRGRGRGQGRKKPVEKSSDELDKELENYHAEAMQT
Sbjct: 181 RGRGRGRGQGRKKPVEKSSDELDKELENYHAEAMQT 215

[Close]

BLAST of Lsi05G003560 vs. NCBI nr
Match: gi|700202652|gb|KGN57785.1| (hypothetical protein Csa_3G302100 [Cucumis sativus])

HSP 1 Score: 380.9 bits (977), Expect = 1.9e-102
Identity = 192/200 (96.00%), Postives = 197/200 (98.50%), Query Frame = 1


Query: 1   MATPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS 60
           M TPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS
Sbjct: 1   MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS 60

Query: 61  AYSIRKPPRRMKNVQWKHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI 120
           AYSIRKPP RMKNVQW+HDLFEDSLRASGISGI+IGTKLYVSNLDYGVTKEDI+ELFSEI
Sbjct: 61  AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFSEI 120

Query: 121 GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 180
           GD+KRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV
Sbjct: 121 GDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 180

Query: 181 SARINVTGVNGRSRRTVVLT 201
           SARINVTG NGR+RRTVVLT
Sbjct: 181 SARINVTGTNGRNRRTVVLT 200

[Close]

BLAST of Lsi05G003560 vs. NCBI nr
Match: gi|641831747|gb|KDO50796.1| (hypothetical protein CISIN_1g022827mg [Citrus sinensis])

HSP 1 Score: 358.6 bits (919), Expect = 1.0e-95
Identity = 202/292 (69.18%), Postives = 237/292 (81.16%), Query Frame = 1


Query: 1   MATPLDMSLEDVIKKNNR-EKLRARGRARRGRGAG----GSFNGGRGVVIGSVRRGPLGI 60
           MAT +DMSL+D+IK   + E+ R +GRARRGRG G    GS +GGR  + G+ RRGPL  
Sbjct: 1   MATHVDMSLDDIIKSRKKSERERGQGRARRGRGRGRGPSGSVSGGR--MTGAARRGPLS- 60

Query: 61  NARASAYSIRKPPRRMKNVQWKHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRE 120
           NAR S+Y+I K  RR +N  W+HDLFEDSLRA+GISGIE+GTKLYVSNL  GVT +DIRE
Sbjct: 61  NARPSSYTIAKSFRRTRNFPWQHDLFEDSLRAAGISGIEVGTKLYVSNLHPGVTNDDIRE 120

Query: 121 LFSEIGDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDN 180
           LFSEIG+LKR+AIH+DKNGRPSGSAEVVY RRSDAFAALKRYNNVLLDGKPMKIE++G N
Sbjct: 121 LFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTN 180

Query: 181 AEMPVSARINVTGVNGRSRRTVVLTPESGRTASSSVANPFPGPSHRGGLR-NGRGRGRG- 240
           AE+P+ AR+NVTGVNGR +RTVV+T  SG    ++  N  PG   RGGLR + +GRGRG 
Sbjct: 181 AEIPLQARVNVTGVNGRRKRTVVMTSGSGNAGGAAAINRGPGQGRRGGLRRSSQGRGRGQ 240

Query: 241 GWSRGLGLGLGGGGGRGRGRGRGRGQGRKKPVEKSSDELDKELENYHAEAMQ 286
           G  RG G G GGGGGRGRGRGRGRGQG+K PV+KS+D+LDKEL+NYHAEAMQ
Sbjct: 241 GQGRGRGRGGGGGGGRGRGRGRGRGQGKKNPVDKSADDLDKELDNYHAEAMQ 289

The following BLAST results are available for this feature:

BLAST of Lsi05G003560 vs. Swiss-Prot


Match Name	E-value	Identity	Description
THO4D_ARATH	5.0e-71	54.58	THO complex subunit 4D OS=Arabidopsis thaliana GN=ALY4 PE=1 SV=1	[more]
THO4C_ARATH	7.5e-67	52.56	THO complex subunit 4C OS=Arabidopsis thaliana GN=ALY3 PE=1 SV=1	[more]
THO4B_ARATH	6.8e-44	44.41	THO complex subunit 4B OS=Arabidopsis thaliana GN=ALY2 PE=1 SV=1	[more]
THO4A_ARATH	1.3e-42	42.27	THO complex subunit 4A OS=Arabidopsis thaliana GN=ALY1 PE=1 SV=1	[more]
THOC4_TAEGU	5.8e-35	37.24	THO complex subunit 4 OS=Taeniopygia guttata GN=ALYREF PE=2 SV=1	[more]

BLAST of Lsi05G003560 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L717_CUCSA	1.3e-102	96.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G302100 PE=4 SV=1	[more]
A0A067EIQ9_CITSI	7.0e-96	69.18	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022827mg PE=4 SV=1	[more]
A0A067EA94_CITSI	1.7e-94	68.94	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022827mg PE=4 SV=1	[more]
V4SXP1_9ROSI	3.3e-93	68.14	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012354mg PE=4 SV=1	[more]
D7TSN8_VITVI	5.6e-93	66.67	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g01020 PE=4 SV=...	[more]

BLAST of Lsi05G003560 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G37720.1	2.8e-72	54.58	ALWAYS EARLY 4	[more]
AT1G66260.1	4.2e-68	52.56	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G02530.1	3.9e-45	44.41	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G59950.5	4.3e-44	42.96	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G23350.1	9.9e-09	36.84	poly(A) binding protein 4	[more]

BLAST of Lsi05G003560 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659114341\|ref\|XP_008457020.1\|	3.2e-142	94.06	PREDICTED: THO complex subunit 4D isoform X1 [Cucumis melo]	[more]
gi\|449456227\|ref\|XP_004145851.1\|	9.3e-142	93.36	PREDICTED: THO complex subunit 4D [Cucumis sativus]	[more]
gi\|659114343\|ref\|XP_008457021.1\|	3.5e-104	93.06	PREDICTED: THO complex subunit 4D isoform X2 [Cucumis melo]	[more]
gi\|700202652\|gb\|KGN57785.1\|	1.9e-102	96.00	hypothetical protein Csa_3G302100 [Cucumis sativus]	[more]
gi\|641831747\|gb\|KDO50796.1\|	1.0e-95	69.18	hypothetical protein CISIN_1g022827mg [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0000166	nucleotide binding
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR025715	FoP_C
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G003560.1	Lsi05G003560.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 99..167 score: 5.3
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 98..170 score: 8.3
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 97..174 score: 15
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 96..171 score: 2.9
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 49..61 score: 3.9E-23coord: 91..171 score: 3.9
IPR025715	Chromatin target of PRMT1 protein, C-terminal	PFAM	PF13865	FoP_duplication	coord: 225..282 score: 1.
IPR025715	Chromatin target of PRMT1 protein, C-terminal	SMART	SM01218	FoP_duplication_2	coord: 216..286 score: 5.8
None	No IPR available	PANTHER	PTHR19965	RNA AND EXPORT FACTOR BINDING PROTEIN	coord: 249..286 score: 2.5E-132coord: 1..233 score: 2.5E
None	No IPR available	PANTHER	PTHR19965:SF33	THO COMPLEX SUBUNIT 4D	coord: 249..286 score: 2.5E-132coord: 1..233 score: 2.5E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G003560	Csa3G302100	Cucumber (Chinese Long) v2	culsiB212
Lsi05G003560	CSPI03G21150	Wild cucumber (PI 183967)	cpilsiB210
Lsi05G003560	CmaCh14G008240	Cucurbita maxima (Rimu)	cmalsiB249
Lsi05G003560	CmoCh14G008390	Cucurbita moschata (Rifu)	cmolsiB237
Lsi05G003560	Cla013218	Watermelon (97103) v1	lsiwmB361
Lsi05G003560	MELO3C020222	Melon (DHL92) v3.5.1	lsimeB368
Lsi05G003560	ClCG05G011470	Watermelon (Charleston Gray)	lsiwcgB332
Lsi05G003560	MELO3C020222.2	Melon (DHL92) v3.6.1	lsimedB384
Lsi05G003560	Cla97C05G093540	Watermelon (97103) v2	lsiwmbB329
Lsi05G003560	Bhi01G001493	Wax gourd	lsiwgoB441
Lsi05G003560	Cp4.1LG03g06040	Cucurbita pepo (Zucchini)	cpelsiB511
Lsi05G003560	CsGy3G020590	Cucumber (Gy14) v2	cgyblsiB199
Lsi05G003560	Carg22257	Silver-seed gourd	carlsiB435
Lsi05G003560	CsaV3_3G020960	Cucumber (Chinese Long) v3	cuclsiB231

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G003560	Wax gourd	lsiwgoB447
Lsi05G003560	Cucurbita maxima (Rimu)	cmalsiB440
Lsi05G003560	Cucurbita moschata (Rifu)	cmolsiB430
Lsi05G003560	Cucurbita pepo (Zucchini)	cpelsiB470
Lsi05G003560	Silver-seed gourd	carlsiB700