CSPI03G21150 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G21150
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	THO complex subunit 4-like protein
Location	Chr3 : 17263834 .. 17268339 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAAAATAAGGTTAAATTTCAATAACTTATGAACAAAATGGACTATTTTTGTTTACGATGTAAGAACAAAAGGTTGCAATAACAAAAGGGAAGAACTCATCTTCTTAGTCCCGAAGGAAAAGTCTCTCTCAGGTCGCCGCCGCCGCCTCCCGCCGGAAGAATCTCAGCATCTCTCTTCGACGCCCTAAAATTCCAACACCCACGATCATTTTCCATCCTTGTCCCTTCGGAATCCTCTCTTTCATCCTGTTAAACTTTCTATCTTCGCTCTCTCGGAAGTCCTTCGACTTTTTCAAGGGATAATCTTCAGGTAACTTCTTCTCATCTCTTTCTTTCCTTTTTGCAAACTCTGGTTATCATGTGAATATGTTTTATCCTTATTCTGTTAGGTTATTTTATCAATCCGAGTTTTTAATGATATTTTTGTTTTGTTTTTTGAGAAGATGCGATCGCTATTATCTCTTTTGTTATACTTGTAAGAATATGGTTGTTATTCTGTGATTGTAGATCTTAAAGTGTTTTCGAAGTTGAAATTGAGCGAGGACGTTTGGCTCTTTTGCGTAATGAATTATTGTTGTTTTTTTGCATAAAATGTTCATTAAATATCTATCGTTCTATTTGTTTGTTTGTTTGTCTTTTCTTTTTAAACTTTCTTTCTAGTATCAGTTACATTCTTGTACATATATTTTTTCCTTATAACAACTGGTGGTAGGTGTAGATATCATTTTCAATCCTTGGATGCTTATTTTCTTTTTTCTCATGCGTATATTTCCTGCTTCTGGGTTTCTGATCTGAAAACTGACTATCTTGAGTGCCTTTATTGTAATCTCATTGACTTTGGAATCAAATATATTGTATATGGGCATGGATGCTGGAGTTGGAGCAGCCATGGACGTGCGTTTTCTTTTTTAAAAACTTTTATTTAAAAAATCTGCTTACGACTGTACTTTTTTTGATCGCATGACTTCCAGAGCCTAAGGTTTTGCGAGGTCGAGGATAATCTTAAACAACATAAGAAACTATAATTACATTTGTTTTATTCTTCAACTCGTTTATCATCAAAACTATATTGTTTTCTTTTAATTATAAAATCATCACTATGGTCCACGTAAAAGAATCTTTAAGGTCATGGTGGAGTTTATTTGGGAAAGGAAAAGACCTATAAGCTTAGGATGGGGTTGTTCGACGGAATAGTTTTATTTATTTATGGTCGTTTCGAAAGCTTCAGGTGAACCAAAGTGTAACAAACTTGGGGAAGAAAAAACAGTTGTTTATTTACTTTTATAAAATCAAGTTACATAAAATGTAAATCTTTGGTTAATGCATATGTATTTGATATCGCTAATCAATAATCATACAATGAGACGAAGAAAATAATGGATAACGTACAAAAGACAAACAGTGATTGAATAATTTAATTCTTTTAACTACAAGGAGCCCAAAATATCATAAAAACAATCTTCATATTACACTTTAGAGGTCCAAGAAATAACTAAATATGACTTTTTCTTTGTTTTACTCCATTAGTGTACCCATAGTCCCCTCTACTTTAGCCTATTTTCATAGTTGTGATCTGTAAATTAAGATGAAGTTTTATTTATTGTCTTTGATAATCATTATGCTATGTAATCATTTTTTGAAAAAATAAATTCAGGCTTGTACCTCACAATGTCTTGATGTTTATGCTGGTTTGCTATTACTTTTGCCTACACTGGTGTTATGAAGCACATTAGTTGGACTGTAGTGGGGACATGAGTTTGTGTATTGTTGAAAATGGATGTTGAATAGGATGGGTGGTAGGTCATTGTCAACCAATATTGGATATATATTACAGTTGAATACATCTAATAAAGTATTGGTTTACCAAGTTTCAAGGAATTCGTTATTGTAAAAAAAAAAAATCAAGTTTCCTGCAAGTATCACGATTAATGTTTTTCTTACCATTCTGCAGGACTTCTTTTCTATAATTCCTTGAAATCTGTTTCCTCCTACCACATCGATGACTACTCCTTTGGATATGTCACTAGAGGATGTGATAAAGAAGAATAATCGTGAAAAGCTTAGAGCACGAGGTAGGGCCCGTCGTGGGCGTGGAGCAGGTGGGTCTTTTAATGGTGGAAGAGGAGTAGTGATAGGATCAGTTCGTAGAGGTCCTCTCGGCATAAATGCACGGGCATCTGCTTACTCAATTCGCAAGGCAAGCTTCAAACTGTGATGTTTAATGCATATGCTTGACAACCTGATATTCCTTGAAAATTCATGCTCATGGGGATCTCAAATAACAACACTATAGTAACTCTTAACAGAAGTGGATCAGTAAAATTGTTCTGTGGAGAATCTCATTGTGGGTCACCCTCTGATCCGAATTGTCTTCTGGTGTATTTGTACCATTATCTTTGCAAATATTGAATGCGTGTGGGTTATCTGGGTTATTTTCAAAGGACTTTCAAGGGTGGAGAATTATATTCTTGTCGATTTATAAGCTGATATGTGTTTTCCCCATCTGGATTCTTATCTGCATGCTTTCATCAGCCCCCACACAGAATGAAGAATGTTCAATGGCAGCATGATTTATTCGAAGATAGTCTTAGAGCTTCAGGGATTTCTGGAATTCAAATTGGCACAAAGTTGTACGTTTCCAACTTGGATTATGGGGTGACCAAAGAAGATATAAAGGTACAACTCAAGCCATATATATTTGACTAAAGATGCTTTCTCTTCATTTTTTTTTTTATTATTATTCACTTGGAACCTGACGGTGAACTCAGGAGTTGTTCTCTGAAATTGGAGACGTGAAAAGATTTGCAATTCATTATGACAAAAATGGTCGTCCAAGTGTAAGTTTCGCCCCTGTCTCTATAAAATTATGCAGTAATGTGTTGCTCTTTGAATTTCTTTAGAATCAAGTATCAATATTGTTTTGGTAGCCACAACTGTGTTCATTGAATCAATATTTCCTTTTGGTGGATTTTAATTTATCTGTATTCAGTACTGAATCTTTGCTTTAGAAGTTGGATAGTGCTAGAAAAAACTATTATAAGGAACTTTTGACTAGAGTACATGTAACAACTTTGAGTTAATGATAAATTATATCTATTGCATGTTTTTATATAATCTCTCTAATGGTTTACTATTCTATTTCATGAAGAAAATTACACTCCAAGTCTCCAATGTAATTAATTGATTATTAGTAACATGTGGTGCAAAAGACTCCTATAAAGTATCAATGGATTAGAATAGACGCAATCTTATTTCGAGTGAAAAAATATGTTGTATTTTTTAGTTAACTAACTTATGCCAGCTAGGCTCAACAGGTTTCATTTTTAATAAGTTCGAATGTAACTAATTTAATACGTTCAGTTCATTTTAGTCTAGATATCTCAAAACTTGTTACTCCAATCCAATCTATTAAGGTTTTCAAGGTTGAGTTTTTTTTCTCCTTTTTTAAGGACTCAACCTATTTGCAAACCAATATATAAGCTTGTGATTTCACTTTTGTATGTGGTGGTATAGTCTCATTCTTTGGTGCCAATGGTTCCTTGACCATGTATTCCCTAATTCTCGCTCGTCTTCATTGCCTTTGCTTATCATTGTTATTCATATTTGGCTTCTTTAAGTTAGCATGAGATTTGTACGAAAATATGATAGTTATCGCATTTCTATTTTAGATATGTATATAAAGGTTAGCTCCCTTATCAAGCTTTAGTTGGCTGATAAACTTCCTATTATTTATTGAAGGGCTCAGCTGAGGTGGTATATACTCGGCGAAGTGATGCATTTGCTGCTCTGAAGCGCTATAACAATGTGTTATTGGATGGGAAGCCAATGAAGATTGAAATGCTTGGTGATAATGCTGAAATGCCGGTTTCTGCACGTATAAATGTTACTGGAACAAATGGAAGAAACAGGAGGACAGTTGTTTTAACGTATGTAGTATTCTAGTTACTTTTTCTCTTTCATTTTGCCCCTTTTCGTATTTAATTTTAACATCTTTATAGGTAATTATTGTGTGCTGGAAGTAGAAAGTTTCTGCACATTATTCTATTTCATGGTCATTTTGGGGTGTTTAGGGGCCTCAACTTCAAGTTGGTGGAGTGGGTTATTATAATCCACACCATGTGTGGGGCTCCAATTATAATAGTTGGTATTTTGAACTATAACCTATAATTGTCAATATTACTTTTTCAAATCTTTTTTTACTACAATGTTTACTGTGTTTACCTTTCCAAAGGTGAGTGGTGCTGCGAGTGGGGTTAGTGCGCCTGTTGTGCTGTCTAGGTGCCTCTTCAAAGAGGTGATTGACCAGCGACACCTTGTTGCACCTTCGTTGATGAAGAAGGCTAGTGCCTCTTCCAATATCTGTGTTTTCTTTCTTTTTTTATTTAATTGATCAACAACCCATGAAATCGATTACTCAACCTTTTGAATTTGGCCGCTTCCTTCTACTTCGCTTTGGTTTCTTCCTTTTAAACTCTTTGATATCATATTCTTTCCTGAATGACAACC

mRNA sequence

ATGACTACTCCTTTGGATATGTCACTAGAGGATGTGATAAAGAAGAATAATCGTGAAAAGCTTAGAGCACGAGGTAGGGCCCGTCGTGGGCGTGGAGCAGGTGGGTCTTTTAATGGTGGAAGAGGAGTAGTGATAGGATCAGTTCGTAGAGGTCCTCTCGGCATAAATGCACGGGCATCTGCTTACTCAATTCGCAAGCCCCCACACAGAATGAAGAATGTTCAATGGCAGCATGATTTATTCGAAGATAGTCTTAGAGCTTCAGGGATTTCTGGAATTCAAATTGGCACAAAGTTGTACGTTTCCAACTTGGATTATGGGGTGACCAAAGAAGATATAAAGGAGTTGTTCTCTGAAATTGGAGACGTGAAAAGATTTGCAATTCATTATGACAAAAATGGTCGTCCAAGTGGCTCAGCTGAGGTGGTATATACTCGGCGAAGTGATGCATTTGCTGCTCTGAAGCGCTATAACAATGTGTTATTGGATGGGAAGCCAATGAAGATTGAAATGCTTGGTGATAATGCTGAAATGCCGGTTTCTGCACGTATAAATGTTACTGGAACAAATGGAAGAAACAGGAGGACAGTTGTTTTAACGTGA

Coding sequence (CDS)

ATGACTACTCCTTTGGATATGTCACTAGAGGATGTGATAAAGAAGAATAATCGTGAAAAGCTTAGAGCACGAGGTAGGGCCCGTCGTGGGCGTGGAGCAGGTGGGTCTTTTAATGGTGGAAGAGGAGTAGTGATAGGATCAGTTCGTAGAGGTCCTCTCGGCATAAATGCACGGGCATCTGCTTACTCAATTCGCAAGCCCCCACACAGAATGAAGAATGTTCAATGGCAGCATGATTTATTCGAAGATAGTCTTAGAGCTTCAGGGATTTCTGGAATTCAAATTGGCACAAAGTTGTACGTTTCCAACTTGGATTATGGGGTGACCAAAGAAGATATAAAGGAGTTGTTCTCTGAAATTGGAGACGTGAAAAGATTTGCAATTCATTATGACAAAAATGGTCGTCCAAGTGGCTCAGCTGAGGTGGTATATACTCGGCGAAGTGATGCATTTGCTGCTCTGAAGCGCTATAACAATGTGTTATTGGATGGGAAGCCAATGAAGATTGAAATGCTTGGTGATAATGCTGAAATGCCGGTTTCTGCACGTATAAATGTTACTGGAACAAATGGAAGAAACAGGAGGACAGTTGTTTTAACGTGA

Homology

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BLAST of CSPI03G21150 vs. Swiss-Prot
Match: THO4D_ARATH (THO complex subunit 4D OS=Arabidopsis thaliana GN=ALY4 PE=1 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.3e-60
Identity = 121/204 (59.31%), Postives = 161/204 (78.92%), Query Frame = 1


Query: 1   MTTPLDMSLEDVIKKNNREKLRARGRAR-RGRGAGGSFNGGRGVVIGSVRRGPLGINARA 60
           M+  L+M+L++++K+    +   RG +R RGRG GG   GGRG   G  RRGPL +NAR 
Sbjct: 1   MSGALNMTLDEIVKRGKTARSGGRGISRGRGRGRGG---GGRGA--GPARRGPLAVNARP 60

Query: 61  SAYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFSE 120
           S+++I KP  R++++ WQ  LFED LRA+G SG+++GT+L+V+NLD GVT EDI+ELFSE
Sbjct: 61  SSFTINKPVRRVRSLPWQSGLFEDGLRAAGASGVEVGTRLHVTNLDQGVTNEDIRELFSE 120

Query: 121 IGDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDN--AE 180
           IG+V+R+AIHYDKNGRPSG+AEVVY RRSDAF ALK+YNNVLLDG+PM++E+LG N  +E
Sbjct: 121 IGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALKKYNNVLLDGRPMRLEILGGNNSSE 180

Query: 181 MPVSAR--INVTGTNGRNRRTVVL 200
            P+S R  +NVTG NGR +RTVV+
Sbjct: 181 APLSGRVNVNVTGLNGRLKRTVVI 199

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BLAST of CSPI03G21150 vs. Swiss-Prot
Match: THO4C_ARATH (THO complex subunit 4C OS=Arabidopsis thaliana GN=ALY3 PE=1 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 5.5e-56
Identity = 116/212 (54.72%), Postives = 163/212 (76.89%), Query Frame = 1


Query: 1   MTTPLDMSLEDVIKKNNREKLRA-----RGRARR-GRGAGGS---FNGGRGVVIGSVRRG 60
           M+  L+M+L++++KK+  E+  A     +G +R+ GRG GG      GGRG   G VRRG
Sbjct: 1   MSDALNMTLDEIVKKSKSERSAAARSGGKGVSRKSGRGRGGPNGVVGGGRGG--GPVRRG 60

Query: 61  PLGINAR-ASAYSIRKPPHRMKNVQWQH--DLFEDSLRASGISGIQIGTKLYVSNLDYGV 120
           PL +N R +S++SI K   R +++ WQ+  DL+E++LRA G+SG+++GT +Y++NLD GV
Sbjct: 61  PLAVNTRPSSSFSINKLARRKRSLPWQNQNDLYEETLRAVGVSGVEVGTTVYITNLDQGV 120

Query: 121 TKEDIKELFSEIGDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMK 180
           T EDI+EL++EIG++KR+AIHYDKNGRPSGSAEVVY RRSDA  A+++YNNVLLDG+PMK
Sbjct: 121 TNEDIRELYAEIGELKRYAIHYDKNGRPSGSAEVVYMRRSDAIQAMRKYNNVLLDGRPMK 180

Query: 181 IEMLGDNAE-MPVSARINVTGTNGRNRRTVVL 200
           +E+LG N E  PV+AR+NVTG NGR +R+V +
Sbjct: 181 LEILGGNTESAPVAARVNVTGLNGRMKRSVFI 210

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BLAST of CSPI03G21150 vs. Swiss-Prot
Match: THO4B_ARATH (THO complex subunit 4B OS=Arabidopsis thaliana GN=ALY2 PE=1 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.6e-39
Identity = 94/191 (49.21%), Postives = 123/191 (64.40%), Query Frame = 1


Query: 1   MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS 60
           M+  LDMSL+D+IK +NR+   +RGR   G G      GG G   G  RR    + AR +
Sbjct: 1   MSGGLDMSLDDIIK-SNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTA 60

Query: 61  AYSIRKPPHRMKNVQWQHDLF--EDSLRAS----------GISGIQIGTKLYVSNLDYGV 120
            YS      +  +  WQ+D+F  + S+ A+          G S I+ GTKLY+SNLDYGV
Sbjct: 61  PYSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGV 120

Query: 121 TKEDIKELFSEIGDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMK 180
           + EDIKELFSE+GD+KR+ IHYD++GR  G+AEVV++RR DA AA+KRYNNV LDGK MK
Sbjct: 121 SNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMK 180

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BLAST of CSPI03G21150 vs. Swiss-Prot
Match: THO4A_ARATH (THO complex subunit 4A OS=Arabidopsis thaliana GN=ALY1 PE=1 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.6e-37
Identity = 86/181 (47.51%), Postives = 116/181 (64.09%), Query Frame = 1


Query: 1   MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS 60
           M+T LDMSL+D+I KN +    +RG A   RG G     G      + R  P   + R++
Sbjct: 1   MSTGLDMSLDDMIAKNRK----SRGGAGPARGTGSGSGPGP-----TRRNNPNRKSTRSA 60

Query: 61  AYSIRKPPHRMKNVQWQHDLF----EDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKEL 120
            Y   K P       W HD+F    ED       +GI+ GTKLY+SNLDYGV  EDIKEL
Sbjct: 61  PYQSAKAPEST----WGHDMFSDRSEDHRSGRSSAGIETGTKLYISNLDYGVMNEDIKEL 120

Query: 121 FSEIGDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNA 178
           F+E+G++KR+ +H+D++GR  G+AEVVY+RR DA AA+K+YN+V LDGKPMKIE++G N 
Sbjct: 121 FAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNL 168

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BLAST of CSPI03G21150 vs. Swiss-Prot
Match: THOC4_TAEGU (THO complex subunit 4 OS=Taeniopygia guttata GN=ALYREF PE=2 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.0e-30
Identity = 78/181 (43.09%), Postives = 114/181 (62.98%), Query Frame = 1


Query: 1   MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGR----GVVIGSVRRGPLG-- 60
           M   +DMSL+D+IK N  ++  +RG  R GRG GG+  GG     GV  G    GP+   
Sbjct: 1   MADKMDMSLDDIIKLNRSQRGASRG-GRGGRGRGGTARGGGPGRGGVGGGRAGGGPVRNR 60

Query: 61  -INARASAYSIRKPPHRMKNV--QWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKE 120
            + AR    +   P  R K +  +WQHDLF+    A   +G++ G KL VSNLD+GV+  
Sbjct: 61  PVMARGGGRNRPAPYSRPKQLPEKWQHDLFDSGFGAG--AGVETGGKLLVSNLDFGVSDA 120

Query: 121 DIKELFSEIGDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEM 173
           DI+ELF+E G +K+ A+HYD++GR  G+A+V + R++DA  A+K+YN V LDG+PM I++
Sbjct: 121 DIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 178

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BLAST of CSPI03G21150 vs. TrEMBL
Match: A0A0A0L717_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G302100 PE=4 SV=1)

HSP 1 Score: 394.4 bits (1012), Expect = 8.1e-107
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 1


Query: 1   MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS 60
           MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS
Sbjct: 1   MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS 60

Query: 61  AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFSEI 120
           AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFSEI
Sbjct: 61  AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFSEI 120

Query: 121 GDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 180
           GDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV
Sbjct: 121 GDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 180

Query: 181 SARINVTGTNGRNRRTVVLT 201
           SARINVTGTNGRNRRTVVLT
Sbjct: 181 SARINVTGTNGRNRRTVVLT 200

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BLAST of CSPI03G21150 vs. TrEMBL
Match: A0A067K1W6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22501 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 1.2e-73
Identity = 141/204 (69.12%), Postives = 173/204 (84.80%), Query Frame = 1


Query: 1   MTTPLDMSLEDVIKKNNREKLRARGRAR----RGRGAGGSFNGGRGVVIGSVRRGPLGIN 60
           M T +DMSL+D+IKKN RE+ R RGR R    RGRG  G+FNGGR  + G VR+GPL +N
Sbjct: 1   MATSVDMSLDDIIKKN-RERGRGRGRTRPGRGRGRGQSGTFNGGR--MTGVVRKGPLSVN 60

Query: 61  ARASAYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKEL 120
           AR S +SI KP  R++N+ WQHDL EDS+RA+GI+G++IGTKLYVSNLDYGV+ EDI+EL
Sbjct: 61  ARPSQFSISKPSRRIRNLPWQHDLLEDSIRAAGITGVEIGTKLYVSNLDYGVSNEDIREL 120

Query: 121 FSEIGDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNA 180
           FSEIG++KR+A+HYD+NGR SGSAEVVYTRRSDAFAALK+YNNVLLDGKPMKIE++G   
Sbjct: 121 FSEIGELKRYAVHYDQNGRSSGSAEVVYTRRSDAFAALKKYNNVLLDGKPMKIEIVGATT 180

Query: 181 EMPVSARINVTGTNGRNRRTVVLT 201
           E+P+SAR+NVTG NGR +RTVV+T
Sbjct: 181 EIPISARVNVTGVNGRRKRTVVMT 201

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BLAST of CSPI03G21150 vs. TrEMBL
Match: B9T100_RICCO (RNA and export factor binding protein, putative OS=Ricinus communis GN=RCOM_0371820 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 1.2e-73
Identity = 136/200 (68.00%), Postives = 171/200 (85.50%), Query Frame = 1


Query: 1   MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS 60
           M+T +DMSL+D+IKKN       RGRARRGRG GGSF+GGR  + G+ R+GPL +NAR S
Sbjct: 1   MSTSVDMSLDDIIKKNRERGRGGRGRARRGRGRGGSFSGGR--MTGAGRKGPLSVNARPS 60

Query: 61  AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFSEI 120
            +SI KP  R++N+ WQHDL EDS+RA+GI+G+++GTKLYVSNL+YGV+ EDI+ELF+EI
Sbjct: 61  QFSIAKPNRRIRNLPWQHDLLEDSIRAAGITGVEVGTKLYVSNLEYGVSNEDIRELFAEI 120

Query: 121 GDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 180
           GD+KR+A+HYDKNGR +GSAEVVYTRRS+AFAALK+YNNVLLDGKPMKIE++G   E P+
Sbjct: 121 GDLKRYAVHYDKNGRSTGSAEVVYTRRSEAFAALKKYNNVLLDGKPMKIEIVGVTGEAPI 180

Query: 181 SARINVTGTNGRNRRTVVLT 201
           SAR+NVTG NGR +RTVV+T
Sbjct: 181 SARVNVTGINGRRKRTVVMT 198

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BLAST of CSPI03G21150 vs. TrEMBL
Match: D7TSN8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g01020 PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 1.5e-73
Identity = 144/202 (71.29%), Postives = 173/202 (85.64%), Query Frame = 1


Query: 1   MTTPLDMSLEDVIKKNNREKLRARGRARRGRG-AGGSFNGGRGVVIGSVRRGPLGINARA 60
           M T LDMSL+D+IK++N E++R RGRARRGRG  GGSFNGGR   I   RRGPL +NAR 
Sbjct: 1   MATSLDMSLDDIIKRSNSERVRGRGRARRGRGPIGGSFNGGRMSGI-PPRRGPLRVNARP 60

Query: 61  SAYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFSE 120
           S+Y+I K   R K + WQHDLFEDSLRA+G+ G++ GTKLY+SNLDYGVT EDI+ELFSE
Sbjct: 61  SSYAIAKSSRRTK-IPWQHDLFEDSLRAAGLPGLEAGTKLYISNLDYGVTNEDIRELFSE 120

Query: 121 IGDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMP 180
           IGD+KR+A+HY+KNGRPSGSAEVVYTRRSDAFAA+KRYNNVLLDGKPMKIE++G +++MP
Sbjct: 121 IGDIKRYAVHYEKNGRPSGSAEVVYTRRSDAFAAVKRYNNVLLDGKPMKIEIIGSDSDMP 180

Query: 181 VSARINVT-GTNGRNRRTVVLT 201
           VSAR+NV  G NG+ RRTVV+T
Sbjct: 181 VSARVNVIGGVNGKRRRTVVMT 200

[Close]

BLAST of CSPI03G21150 vs. TrEMBL
Match: W9S960_9ROSA (RNA and export factor-binding protein 2 OS=Morus notabilis GN=L484_027188 PE=4 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 3.4e-73
Identity = 143/207 (69.08%), Postives = 172/207 (83.09%), Query Frame = 1


Query: 1   MTTPLDMSLEDVIKKN----NREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGIN 60
           M+TPLDMSL +VIK +    NR+++R RGR RRGRG  G F+GGR  + G VRR PL +N
Sbjct: 1   MSTPLDMSLNEVIKSSRGSGNRDRVRERGRTRRGRGPRGFFSGGR--MTGPVRRNPLAVN 60

Query: 61  ARASAYSIRKPPHRM---KNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDI 120
           A+ S Y+I K   ++   K+  W+HDLFEDS+RA+GI+GI+IGTKLYVSNLDYGVT EDI
Sbjct: 61  AQPSPYTIAKASSKLLITKSFPWRHDLFEDSIRAAGITGIEIGTKLYVSNLDYGVTNEDI 120

Query: 121 KELFSEIGDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLG 180
           +ELFSEIGD+KR+A+HYDK GRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIE++G
Sbjct: 121 RELFSEIGDLKRYAVHYDKTGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEIVG 180

Query: 181 DNAEMPVSARINVTGTNGRNRRTVVLT 201
            N EMP+SAR+NV G NGR +RTVV+T
Sbjct: 181 ANGEMPISARVNVAGVNGRKKRTVVMT 205

[Close]

BLAST of CSPI03G21150 vs. TAIR10
Match: AT5G37720.1 (AT5G37720.1 ALWAYS EARLY 4)

HSP 1 Score: 234.2 bits (596), Expect = 7.1e-62
Identity = 121/204 (59.31%), Postives = 161/204 (78.92%), Query Frame = 1


Query: 1   MTTPLDMSLEDVIKKNNREKLRARGRAR-RGRGAGGSFNGGRGVVIGSVRRGPLGINARA 60
           M+  L+M+L++++K+    +   RG +R RGRG GG   GGRG   G  RRGPL +NAR 
Sbjct: 1   MSGALNMTLDEIVKRGKTARSGGRGISRGRGRGRGG---GGRGA--GPARRGPLAVNARP 60

Query: 61  SAYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFSE 120
           S+++I KP  R++++ WQ  LFED LRA+G SG+++GT+L+V+NLD GVT EDI+ELFSE
Sbjct: 61  SSFTINKPVRRVRSLPWQSGLFEDGLRAAGASGVEVGTRLHVTNLDQGVTNEDIRELFSE 120

Query: 121 IGDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDN--AE 180
           IG+V+R+AIHYDKNGRPSG+AEVVY RRSDAF ALK+YNNVLLDG+PM++E+LG N  +E
Sbjct: 121 IGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALKKYNNVLLDGRPMRLEILGGNNSSE 180

Query: 181 MPVSAR--INVTGTNGRNRRTVVL 200
            P+S R  +NVTG NGR +RTVV+
Sbjct: 181 APLSGRVNVNVTGLNGRLKRTVVI 199

[Close]

BLAST of CSPI03G21150 vs. TAIR10
Match: AT1G66260.1 (AT1G66260.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 218.8 bits (556), Expect = 3.1e-57
Identity = 116/212 (54.72%), Postives = 163/212 (76.89%), Query Frame = 1


Query: 1   MTTPLDMSLEDVIKKNNREKLRA-----RGRARR-GRGAGGS---FNGGRGVVIGSVRRG 60
           M+  L+M+L++++KK+  E+  A     +G +R+ GRG GG      GGRG   G VRRG
Sbjct: 1   MSDALNMTLDEIVKKSKSERSAAARSGGKGVSRKSGRGRGGPNGVVGGGRGG--GPVRRG 60

Query: 61  PLGINAR-ASAYSIRKPPHRMKNVQWQH--DLFEDSLRASGISGIQIGTKLYVSNLDYGV 120
           PL +N R +S++SI K   R +++ WQ+  DL+E++LRA G+SG+++GT +Y++NLD GV
Sbjct: 61  PLAVNTRPSSSFSINKLARRKRSLPWQNQNDLYEETLRAVGVSGVEVGTTVYITNLDQGV 120

Query: 121 TKEDIKELFSEIGDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMK 180
           T EDI+EL++EIG++KR+AIHYDKNGRPSGSAEVVY RRSDA  A+++YNNVLLDG+PMK
Sbjct: 121 TNEDIRELYAEIGELKRYAIHYDKNGRPSGSAEVVYMRRSDAIQAMRKYNNVLLDGRPMK 180

Query: 181 IEMLGDNAE-MPVSARINVTGTNGRNRRTVVL 200
           +E+LG N E  PV+AR+NVTG NGR +R+V +
Sbjct: 181 LEILGGNTESAPVAARVNVTGLNGRMKRSVFI 210

[Close]

BLAST of CSPI03G21150 vs. TAIR10
Match: AT5G02530.1 (AT5G02530.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 164.1 bits (414), Expect = 9.0e-41
Identity = 94/191 (49.21%), Postives = 123/191 (64.40%), Query Frame = 1


Query: 1   MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS 60
           M+  LDMSL+D+IK +NR+   +RGR   G G      GG G   G  RR    + AR +
Sbjct: 1   MSGGLDMSLDDIIK-SNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTA 60

Query: 61  AYSIRKPPHRMKNVQWQHDLF--EDSLRAS----------GISGIQIGTKLYVSNLDYGV 120
            YS      +  +  WQ+D+F  + S+ A+          G S I+ GTKLY+SNLDYGV
Sbjct: 61  PYSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGV 120

Query: 121 TKEDIKELFSEIGDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMK 180
           + EDIKELFSE+GD+KR+ IHYD++GR  G+AEVV++RR DA AA+KRYNNV LDGK MK
Sbjct: 121 SNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMK 180

[Close]

BLAST of CSPI03G21150 vs. TAIR10
Match: AT5G59950.5 (AT5G59950.5 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 156.8 bits (395), Expect = 1.4e-38
Identity = 86/181 (47.51%), Postives = 116/181 (64.09%), Query Frame = 1


Query: 1   MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS 60
           M+T LDMSL+D+I KN +    +RG A   RG G     G      + R  P   + R++
Sbjct: 1   MSTGLDMSLDDMIAKNRK----SRGGAGPARGTGSGSGPGP-----TRRNNPNRKSTRSA 60

Query: 61  AYSIRKPPHRMKNVQWQHDLF----EDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKEL 120
            Y   K P       W HD+F    ED       +GI+ GTKLY+SNLDYGV  EDIKEL
Sbjct: 61  PYQSAKAPEST----WGHDMFSDRSEDHRSGRSSAGIETGTKLYISNLDYGVMNEDIKEL 120

Query: 121 FSEIGDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNA 178
           F+E+G++KR+ +H+D++GR  G+AEVVY+RR DA AA+K+YN+V LDGKPMKIE++G N 
Sbjct: 121 FAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNL 168

[Close]

BLAST of CSPI03G21150 vs. TAIR10
Match: AT5G44200.1 (AT5G44200.1 CAP-binding protein 20)

HSP 1 Score: 58.9 bits (141), Expect = 4.1e-09
Identity = 30/103 (29.13%), Postives = 57/103 (55.34%), Query Frame = 1


Query: 69  HRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFSEIGDVKRFAI 128
           +R +      + F+++LRAS        T +Y+ N+ +  T+E + ELFS  G++K+  +
Sbjct: 14  YRDRRFSGTQEEFDEALRAS--------TTVYIGNVSFYTTEEQLYELFSRAGEIKKIIM 73

Query: 129 HYDKNGR-PSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIE 171
             DKN + P G   V++  R D   A+K  +  +LD +P++++
Sbjct: 74  GLDKNTKTPCGFCFVLFYSREDTEDAVKYISGTILDDRPIRVD 108

[Close]

BLAST of CSPI03G21150 vs. NCBI nr
Match: gi|449456227|ref|XP_004145851.1| (PREDICTED: THO complex subunit 4D [Cucumis sativus])

HSP 1 Score: 394.4 bits (1012), Expect = 1.2e-106
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 1


Query: 1   MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS 60
           MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS
Sbjct: 1   MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS 60

Query: 61  AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFSEI 120
           AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFSEI
Sbjct: 61  AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFSEI 120

Query: 121 GDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 180
           GDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV
Sbjct: 121 GDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 180

Query: 181 SARINVTGTNGRNRRTVVLT 201
           SARINVTGTNGRNRRTVVLT
Sbjct: 181 SARINVTGTNGRNRRTVVLT 200

[Close]

BLAST of CSPI03G21150 vs. NCBI nr
Match: gi|700202652|gb|KGN57785.1| (hypothetical protein Csa_3G302100 [Cucumis sativus])

HSP 1 Score: 394.4 bits (1012), Expect = 1.2e-106
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 1


Query: 1   MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS 60
           MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS
Sbjct: 1   MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS 60

Query: 61  AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFSEI 120
           AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFSEI
Sbjct: 61  AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFSEI 120

Query: 121 GDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 180
           GDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV
Sbjct: 121 GDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 180

Query: 181 SARINVTGTNGRNRRTVVLT 201
           SARINVTGTNGRNRRTVVLT
Sbjct: 181 SARINVTGTNGRNRRTVVLT 200

[Close]

BLAST of CSPI03G21150 vs. NCBI nr
Match: gi|659114341|ref|XP_008457020.1| (PREDICTED: THO complex subunit 4D isoform X1 [Cucumis melo])

HSP 1 Score: 392.1 bits (1006), Expect = 5.8e-106
Identity = 198/200 (99.00%), Postives = 200/200 (100.00%), Query Frame = 1


Query: 1   MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS 60
           MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS
Sbjct: 1   MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS 60

Query: 61  AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFSEI 120
           AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDI+ELFSEI
Sbjct: 61  AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIRELFSEI 120

Query: 121 GDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 180
           GD+KRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV
Sbjct: 121 GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 180

Query: 181 SARINVTGTNGRNRRTVVLT 201
           SARINVTGTNGRNRRTVVLT
Sbjct: 181 SARINVTGTNGRNRRTVVLT 200

[Close]

BLAST of CSPI03G21150 vs. NCBI nr
Match: gi|1009178055|ref|XP_015870314.1| (PREDICTED: THO complex subunit 4D [Ziziphus jujuba])

HSP 1 Score: 287.3 bits (734), Expect = 2.0e-74
Identity = 146/203 (71.92%), Postives = 174/203 (85.71%), Query Frame = 1


Query: 1   MTTPLDMSLEDVIK--KNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINAR 60
           MTTPLDMSL+D+IK  + NRE++R RGRARRGRG+ GSF GGR  + G +RRGPL +NA+
Sbjct: 1   MTTPLDMSLDDMIKSSRGNRERVRDRGRARRGRGSRGSFGGGR--MTGPIRRGPLTLNAQ 60

Query: 61  ASAYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFS 120
            S Y I K   R+K+  W+HDLFEDSLRA+GI+ ++IGTKLYVSNLD GVT EDI+ELF+
Sbjct: 61  PSPYMIAKSSRRVKSFPWRHDLFEDSLRAAGITQVEIGTKLYVSNLDNGVTNEDIRELFA 120

Query: 121 EIGDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEM 180
           EIGD++R+A+HYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIE++G N  M
Sbjct: 121 EIGDLRRYAVHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEIVGANPGM 180

Query: 181 PVSARINVTGTN-GRNRRTVVLT 201
           P+SAR+NVTG N GR RRTVV+T
Sbjct: 181 PISARVNVTGVNGGRRRRTVVMT 201

[Close]

BLAST of CSPI03G21150 vs. NCBI nr
Match: gi|1009126635|ref|XP_015880261.1| (PREDICTED: THO complex subunit 4D, partial [Ziziphus jujuba])

HSP 1 Score: 287.3 bits (734), Expect = 2.0e-74
Identity = 146/203 (71.92%), Postives = 174/203 (85.71%), Query Frame = 1


Query: 1   MTTPLDMSLEDVIK--KNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINAR 60
           MTTPLDMSL+D+IK  + NRE++R RGRARRGRG+ GSF GGR  + G +RRGPL +NA+
Sbjct: 1   MTTPLDMSLDDMIKSSRGNRERVRDRGRARRGRGSRGSFGGGR--MTGPIRRGPLTLNAQ 60

Query: 61  ASAYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFS 120
            S Y I K   R+K+  W+HDLFEDSLRA+GI+ ++IGTKLYVSNLD GVT EDI+ELF+
Sbjct: 61  PSPYMIAKSSRRVKSFPWRHDLFEDSLRAAGITQVEIGTKLYVSNLDNGVTNEDIRELFA 120

Query: 121 EIGDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEM 180
           EIGD++R+A+HYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIE++G N  M
Sbjct: 121 EIGDLRRYAVHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEIVGANPGM 180

Query: 181 PVSARINVTGTN-GRNRRTVVLT 201
           P+SAR+NVTG N GR RRTVV+T
Sbjct: 181 PISARVNVTGVNGGRRRRTVVMT 201

The following BLAST results are available for this feature:

BLAST of CSPI03G21150 vs. Swiss-Prot


Match Name	E-value	Identity	Description
THO4D_ARATH	1.3e-60	59.31	THO complex subunit 4D OS=Arabidopsis thaliana GN=ALY4 PE=1 SV=1	[more]
THO4C_ARATH	5.5e-56	54.72	THO complex subunit 4C OS=Arabidopsis thaliana GN=ALY3 PE=1 SV=1	[more]
THO4B_ARATH	1.6e-39	49.21	THO complex subunit 4B OS=Arabidopsis thaliana GN=ALY2 PE=1 SV=1	[more]
THO4A_ARATH	2.6e-37	47.51	THO complex subunit 4A OS=Arabidopsis thaliana GN=ALY1 PE=1 SV=1	[more]
THOC4_TAEGU	1.0e-30	43.09	THO complex subunit 4 OS=Taeniopygia guttata GN=ALYREF PE=2 SV=1	[more]

BLAST of CSPI03G21150 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L717_CUCSA	8.1e-107	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G302100 PE=4 SV=1	[more]
A0A067K1W6_JATCU	1.2e-73	69.12	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22501 PE=4 SV=1	[more]
B9T100_RICCO	1.2e-73	68.00	RNA and export factor binding protein, putative OS=Ricinus communis GN=RCOM_0371...	[more]
D7TSN8_VITVI	1.5e-73	71.29	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g01020 PE=4 SV=...	[more]
W9S960_9ROSA	3.4e-73	69.08	RNA and export factor-binding protein 2 OS=Morus notabilis GN=L484_027188 PE=4 S...	[more]

BLAST of CSPI03G21150 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G37720.1	7.1e-62	59.31	ALWAYS EARLY 4	[more]
AT1G66260.1	3.1e-57	54.72	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G02530.1	9.0e-41	49.21	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G59950.5	1.4e-38	47.51	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G44200.1	4.1e-09	29.13	CAP-binding protein 20	[more]

BLAST of CSPI03G21150 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449456227\|ref\|XP_004145851.1\|	1.2e-106	100.00	PREDICTED: THO complex subunit 4D [Cucumis sativus]	[more]
gi\|700202652\|gb\|KGN57785.1\|	1.2e-106	100.00	hypothetical protein Csa_3G302100 [Cucumis sativus]	[more]
gi\|659114341\|ref\|XP_008457020.1\|	5.8e-106	99.00	PREDICTED: THO complex subunit 4D isoform X1 [Cucumis melo]	[more]
gi\|1009178055\|ref\|XP_015870314.1\|	2.0e-74	71.92	PREDICTED: THO complex subunit 4D [Ziziphus jujuba]	[more]
gi\|1009126635\|ref\|XP_015880261.1\|	2.0e-74	71.92	PREDICTED: THO complex subunit 4D, partial [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G21150.1	CSPI03G21150.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 99..167 score: 4.2
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 98..170 score: 2.6
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 97..174 score: 15
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 96..171 score: 4.2
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 47..61 score: 4.57E-24coord: 91..171 score: 4.57
None	No IPR available	PANTHER	PTHR19965	RNA AND EXPORT FACTOR BINDING PROTEIN	coord: 1..197 score: 8.7E
None	No IPR available	PANTHER	PTHR19965:SF33	THO COMPLEX SUBUNIT 4D	coord: 1..197 score: 8.7E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI03G21150	Cla013218	Watermelon (97103) v1	cpiwmB245
CSPI03G21150	Csa3G302100	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G21150	MELO3C020222	Melon (DHL92) v3.5.1	cpimeB243
CSPI03G21150	ClCG05G011470	Watermelon (Charleston Gray)	cpiwcgB240
CSPI03G21150	Lsi05G003560	Bottle gourd (USVL1VR-Ls)	cpilsiB210
CSPI03G21150	MELO3C020222.2	Melon (DHL92) v3.6.1	cpimedB240
CSPI03G21150	CsaV3_3G020960	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G21150	Cla97C05G093540	Watermelon (97103) v2	cpiwmbB224
CSPI03G21150	CmaCh14G008240	Cucurbita maxima (Rimu)	cmacpiB244
CSPI03G21150	CmoCh14G008390	Cucurbita moschata (Rifu)	cmocpiB232
CSPI03G21150	Cp4.1LG03g06040	Cucurbita pepo (Zucchini)	cpecpiB602
CSPI03G21150	CsGy3G020590	Cucumber (Gy14) v2	cgybcpiB110
CSPI03G21150	Carg22257	Silver-seed gourd	carcpiB0520

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G21150	Silver-seed gourd	carcpiB0798
CSPI03G21150	Wax gourd	cpiwgoB271
CSPI03G21150	Cucurbita maxima (Rimu)	cmacpiB458
CSPI03G21150	Cucurbita moschata (Rifu)	cmocpiB446
CSPI03G21150	Cucurbita pepo (Zucchini)	cpecpiB552