CsaV3_3G020960 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_3G020960
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	THO complex subunit 4D
Location	chr3 : 17389557 .. 17402833 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCACCCAAAACACATATTATAATATCATATACTATAACAATTGTACCCGAAACATAGACTATAATAATTTGCACTCGAAATATAGACTATTATAATACCTATACTATTATAATCTCCATCCTTGCTCCAAACGCTTCCTTACGAATTAAAATGACTAATTTAAAATAGGAGAGACAAAGAGTTGTTAGTTAAAATTCAGATACTTTTCCCTTATTTATGTTTGGGTTTATGCAAGAAAACTCTTCTAACATATACATATATGCATACATGATTGAAGGGCAATTATAAGGTATTATTTATAGGTAAAACATTTAAAATAGATTATATTTATAAAATCAGGAAAATAAGGTTAAATTTCAATAACTTATGAACAAAATGGACTATTTTTGTTTACGATGTAAGAACAAAAGGTTGCAATAACAAAAGGGAAGAACTCATCTTCTTAGTCCCGAAGGAAAAGTCTCTCTCAGGTCGCCGCCGCCGCCTCCCGCCGGAAGAATCTCAGCATCTCTCTTCGACGCCCTAAAATTCCAACACCCACGATCATTTTCCATCCTTGTCCCTTCGGAATCCTCTCTTTCATCCTGTTAAACTTTCTATCTTCGCTCTCTCGGAAGTCCTTCGACTTTTTCAAGGGATAATCTTCAGGTAACTTCTTCTCATCTCTTTCTTTCCTTTTTGCAAACTCTGGTTATCATGTGAATATGTTTTATCCTTATTCTGTTAGGTTATTTTATCAATCCGAGTTTTTAATGATATTTTTGTTTTGTTTTTTGAGAAGATGCGATCGCTATTATCTCTTTTGTTATACTTGTAAGAATATGGTTGTTATTCTGTGATTGTAGATCTTAAAGTGTTTTCGAAGTTGAAATTGAGCGAGGACGTTTGGCTCTTTTGCGTAATGAATTATTGTTGTTTTTTTGCATAAAATGTTCATTAAATATCTATCGTTCTATTTGTTTGTTTGTTTGTCTTTTCTTTTTAAACTTTCTTTCTAGTATCAGTTACATTCTTGTACATATATTTTTTCCTTATAACAACTGGTGGTAGGTGTAGATATCATTTTCAATCCTTGGATGCTTATTTTCTTTTTTCTCATGCGTATATTTCCTGCTTCTGGGTTTCTGATCTGAAAACTGACTATCTTGAGTGCCTTTATTGTAATCTCATTGACTTTGGAATCAAATATATTGTATATGGGCATGGATGCTGGAGTTGGAGCAGCCATGGACGTGCGTTTTCTTTTTTAAAAACTTTTATTTAAAAAATCTGCTTACGACTGTACTTTTTTTGATCGCATGACTTCCAGAGCCTAAGGTTTTGCGAGGTCGAGGATAATCTTAAACAACATAAGAAACTATAATTACATTTGTTTTATTCTTCAACTCGTTTATCATCAAAACTATATTGTTTTCTTTTAATTATAAAATCATCACTATGGTCCACGTAAAAGAATCTTTAAGGTCATGGTGGAGTTTATTTGGGAAAGGAAAAGACCTATAAGCTTAGGATGGGGTTGTTCGACGGAATAGTTTTATTTATTTATGGTCGTTTCGAAAGCTTCAGGTGAACCAAAGTGTAACAAACTTGGGGAAGAAAAAACAGTTGTTTATTTACTTTTATAAAATCAAGTTACATAAAATGTAAATCTTTGGTTAATGCATATGTATTTGATATCGCTAATCAATAATCATACAATGAGACGAAGAAAATAATGGATAACGTACAAAAGACAAACAGTGATTGAATAATTTAATTCTTTTAACTACAAGGAGCCCAAAATATCATAAAAACAATCTTCATATTACACTTTAGAGGTCCAAGAAATAACTAAATATGACTTTTTCTTTGTTTTACTCCATTAGTGTACCCATAGTCCCCTCTACTTTAGCCTATTTTCATAGTTGTGATCTGTAAATTAAGATGAAGTTTTATTTATTGTCTTTGATAATCATTATGCTATGTAATCATTTTTTGAAAAAATAAATTCAGGCTTGTACCTCACAATGTCTTGATGTTTATGCTGGTTTGCTATTACTTTTGCCTACACTGGTGTTATGAAGCACATTAGTTGGACTGTAGTGGGGACATGAGTTTGTGTATTGTTGAAAATGGATGTTGAATAGGATGGGTGGTAGGTCATTGTCAACCAATATTGGATATATATTACAGTTGAATACATCTAATAAAGTATTGGTTTACCAAGTTTCAAGGAATTCGTTATTGTAAAAAAAAAAAATCAAGTTTCCTGCAAGTATCACGATTAATGTTTTTCTTACCATTCTGCAGGACTTCTTTTCTATAATTCCTTGAAATCTGTTTCCTCCTACCACATCGATGACTACTCCTTTGGATATGTCACTAGAGGATGTGATAAAGAAGAATAATCGTGAAAAGCTTAGAGCACGAGGTAGGGCCCGTCGTGGGCGTGGAGCAGGTGGGTCTTTTAATGGTGGAAGAGGAGTAGTGATAGGATCAGTTCGTAGAGGTCCTCTCGGCATAAATGCACGGGCATCTGCTTACTCAATTCGCAAGGCAAGCTTCAAACTGTGATGTTTAATGCATATGCTTGACAACCTGATATTCCTTGAAAATTCATGCTCATGGGGATCTCAAATAACAACACTATAGTAACTCTTAACAGAAGTGGATCAGTAAAATTGTTCTGTGGAGAATCTCATTGTGGGTCACCCTCTGATCCGAATTGTCTTCTGGTGTATTTGTACCATTATCTTTGCAAATATTGAATGCGTGTGGGTTATCTGGGTTATTTTCAAAGGACTTTCAAGGGTGGAGAATTATATTCTTGTCGATTTATAAGCTGATATGTGTTTTCCCCATCTGGATTCTTATCTGCATGCTTTCATCAGCCCCCACACAGAATGAAGAATGTTCAATGGCAGCATGATTTATTCGAAGATAGTCTTAGAGCTTCAGGGATTTCTGGAATTCAAATTGGCACAAAGTTGTACGTTTCCAACTTGGATTATGGGGTAACCAAAGAAGATATAAAGGTACAACTCAAGCCATATATATTTGACTAAAGATGCTTTCTCTTCATTTTTTTTTTTTATTATTATTCACTTGGAACCTGACGGTGAACTCAGGAGTTGTTCTCTGAAATTGGAGACGTGAAAAGATTTGCAATTCATTATGACAAAAATGGTCGTCCAAGTGTAAGTTTCGCCCCTGTCTCTATAAAATTATGCAGTAATGTGTTGCTCTTTGAATTTCTTTAGAATCAAGTATCAATATTGTTTTGGTAGCCACAACTGTGTTCATTGAATCAATATTTCCTTTTGGTGGATTTTAATTTATCTGTATTCAGTACTGAATCTTTGCTTTAGAAGTTGGATAGTGCTAGAAAAAACTATTATAAGGAACTTTTGACTAGAGTACATGTAACAACTTTGAGTTAATGATAAATTATATCTATTGCATGTTTTTATATAATCTCTCTAATGGTTTACTATTCTATTTCATGAAGAAAATTACACTCCAAGTCTCCAATGTAATTAATTGATTATTAGTAACATGTGGTGCAAAAGACTCCTATAAAGTATCAATGGATTAGAATAGACGCAATCTTATTTCGAGTGAAAAAATATGTTGTATTTTTTAGTTAACTAACTTATGCCAGCTAGGCTCAACAGGTTTCATTTTTAATAAGTTCGAATGTAACTAATTTAATACGTTCAGTTCATTTTAGTCTAGATATCTCAAAACTTGTTACTCCAATCCAATCTATTAAGGTTTTCAAGGTTGAGTTTTTTTTCTCCTTTTTTAAGGACTCAACCTATTTGCAAACCAATATATAAGCTTGTGATTTCACTTTTGTATGTGGTGGTATAGTCTCATTCTTTGGTGCCAATGGTTCCTTGACCATGTATTCCCTAATTCTCGCTCGTCTTCATTGCCTTTGCTTATCATTGTTATTCATATTTGGCTTCTTTAAGTTAGCATGAGATTTGTACGAAAATATGATAGTTATCGCATTTCTATTTTAGATATGTATATAAAGGTTAGCTCCCTTATCAAGCTTTAGTTGGCTGATAAACTTCCTATTATTTATTGAAGGGCTCAGCTGAGGTGGTATATACTCGGCGAAGTGATGCATTTGCTGCTCTGAAGCGCTATAACAATGTGTTATTGGATGGGAAGCCAATGAAGATTGAAATGCTTGGTGATAATGCTGAAATGCCGGTTTCTGCACGTATAAATGTTACTGGAACAAATGGAAGAAACAGGAGGACAGTTGTTTTAACGTATGTAGTATTCTAGTTACTTTTTCTCTTTCATTTTGCCCCTTTTCGTATTTAATTTTAACATCTTTATAGGTAATTATTGTGTGCTGGAAGTAGAAAGTTTCTGCACATTATTCTATTTCATGGTCATTTTGGGGTGTTTAGGGGCCTCAACTTCAAGTTGGTGGAGTGGGTTATTATAATCCACACCATGTGTGGGGCTCCAATTATAATAGTTGGTATTTTGAACTATAACCTATAATTGTCAATATTACTTTTTCAAATCTTTTTTTACTACAATGTTTACTGTGTTTACCTTTCCAAAGGTGAGTGGTGCTGCGAGTGGGGTTAGTGCGCCTGTTGTGCTGTCTAGGTGCCTCTTCAAAGAGGTGATTGACCAGCGACACCTTGTTGCACCTTCGTTGATGAAGAAGGCTAGTGCCTCTTCCAATATCTGTGTTTTCTTTCTTTTTTTATTTAATTGATCAACAACCCATGAAATCGATTACTCAACCTTTTGAATTTGGCCGCTTCCTTCTACTTCGCTTTGGTTTCTTCCTTTTAAACTCTTTGATATCATATTCTTTCCTGAATGACAACCCAACTCTCTCTACTCCTTCACGATTTTGCTTATTCTCTTTGAAAGGCGCCACTTGCAAAAAATTTCATTGTTTCCTTGAGGTTTGAAGTTCCTCATCAATCCTGTCATCTTGCTTTTTATGATTGCTCCTTGTGGGTTTTGATTTTGGGTTTCAATTGTGGGTTTCGATTGATTCAAGTTCTGCGTTTTATGTAAAGGTATATTAATATTATATGTTGTATAATATTATATTTTTTCTGTTGATTTCTTTAACCTTGAGCAAAATTTTAAATAAAATACCAGACAGTTAGTGAGGTTGGATTATGAATTCTTGAGCCATAAAATCTGTATTATGTTATTATTGTTTTACTATATATTTTTATATTCATTTTTAGTGGGTGGGTTGAAATATTTCTTTTGGCGCCTTGCATTGTTTTCTAATAATAAGTCATAATTATCTTAATATTTGCATGTTACAATCTTAAATATTTAGCAGAGTGAGGTGTGAAATATTATCTTAATTTTCTTTTCAACAAGTTGATCTTATAATTTATATGTGATTATATAAAATTTGATTCTTTACAATTTATTATTAGTTATTAATAGAAGATGTAACGAGACTTATATTTGCCTCATCCCCAAAAAGAAAGAGGCAGGTCGTGTCAGTGACTTCAGACCAATTAGCTTGATTACCTCCTTGTATAAAATTATCTCCAAAGTGCTTGCTTCAAGGCTTAAAAAAGTTCTTCCATCGATAATTAATGACTCTCAAATGGCTTTTGTGGAGGGAAGGCAAATCCTTGATGCTATTTTAACTGCTTCTGAGGCTGTTGACGAATGGTCTTTAAGAGGCAGAAAAGGCGTGCTTTTGAAGCTCGACCTGGAGAAAGCTTATGATAAGGTGGATTGGTCTTTTCTTGATATGATCATGAAACTTAAAGGCTTTGGTCAGAGATGGAGGAAATGGATTTGGAGATGCTTGTCGACAACTAATTCTCCATCATTATCAACGGGAGGCCTAGAGGGAAGATTATTGCTAAAAGGGGCATTCGACAAGGTGATCCTCTTGCTCCTTTTCTTTTTACGATTGTGGGAGATGCTCTAAGCTGCCTTATCCACTACTGTAATGAGAAAAGGAGTTTTAAAAGGCTTTCATTTTGAGAACCTGTCAGAGGAGTTAACTCATCTTCAGTACGCAGACGACACGCTTCTTTTTTCTTCCTGGGAGGATGGAAATCTGGAGAACTGGTGGAAGGTGGTTAATATCTTCCTTATGGGAGCCGGTCTTTCCCTCAATAGAGCTAAAACCTCCCTGATCGGTATTAACCTTAGCAATGATGACTTAGCTCCTTTTAGTGAATCTACGGGATGCTCGGTTGAGAATCTTCCCTTTAAATATTTGGGCTTCTCTATTGGAAGGGGTCATAATAGAAAAGAGATGTGGAACAATCTTGAAGAGAGATTCAGACACAAACTTGATAGGTGGAGGAATGTATCCCTCTCCAAAGGGGGTAGACTAACTCTGGTGCAATCAGTTCTCAATAGCCTCCCTTGTTATCTCTTCTCCCTTGCTCAAGCTCCAGTTGGTGTTATTAATAGATTGGAACAGATGATCAGGAAGTTTGTTTGGACAGGTGGATCTACGAATCCAATTGCTCATCTCGTCAATTGGGAATGCACTTCCACCCCAACTTGTTATGGTGGTCTTGGGATTGGCTCTTTTAGGCAAAAGAATATTGCTCTTCTCACTAAATGGTTTTGGAGGCTTAGTAAGGAAGAAGCCTCATTATGGAGGCGATTAATTGTGGCTATCTATGGTTTAGAGGAGAATGGGTGGTCTACCAAAGATCCAAACAGGGGAAAATCTCATAGATTATGGGCTGGTATTTTAAAGCATAAGGAGATATTCTTTAATTTTTCAGCTTTTGTTTTGGGAGAAGGAACAAAAATCAAGTTTTGGAAGGATAAATGGTGTGTTGCGGAAACACTTGCAGAAAAATTCCCTAACTTATTCTCTTTGGCGCTGAATAAGGATGCTTATGTGGCTGAATGCTGGTGTACTGCTACTCATTCTTGGAATTTGGGCCCTAGAAGAAATATGCTCGACAACGAGATTGCCAATGCAGCCTCAGCTTTAGAAATTCTTCATTCTTGGGCCCCCAATGAAAGGAATGATAGTCTTAAATGGACTTCTAACATGAATGGCAACTTCACTACAAAATCTACTTTTCTTAACTTAACTAAGAGATCCCCCAACATTGCTGTTCCCTTGATTCGTCATATTTGGAAGAATAAAATTCCGAAGAAGGTGAAGTTTTTCTTATGGTCGCTTGCTTACAGAAGCCTCAACACCCATGAGAAACTACAAAAAAAAATTCAGAACACATTGCTTAGCCCCTCGATGTGTTGCCTATGCGCTAAAGATGAGGAAACCTTGGATCATTTATTTCTACATTGTCCCTTCACAAAAAAAGCTTGGAACACTCTGTTTGGTATTTTTGACTTGGAGCTTTGCCTTCCTAGCAAGATTGATAGCTGGATGATTGAAGGTCTTAACATTAGAGGTTACAGCCCTAAAGGAAACATCTTATGGAAATGTGCGACGCGTTCCCTTTTGTGGAGCATTTGGAAAGAAAGGAATAGCAGAATTTTTGAAGATAGATTTAATTCTTTTGATTCTTTTTGGACTGTGGTTCAACACATAGCCTCATAGCCTCTTGGTGGAGTACGAATTACACCAAACACTTTTGTAATTATAGCCTTTCTATGATTTTAAACAACTGGATGGCCATTATGTCTTAGTTTCCTAGCTTCTTCCGGGGAGGGCCCTCTTGTCCCTCGCCCTTAGCATGTTCTGTTTTGTTATATGAATATACTTGTCTCTTATCAAAAAAAAAAAAAAAAAATCTTTGAGGCTTTTACATATGAATATAAACGTATGTTTTACATATATCATTTATTTATTGTGCTTGCTACGCTCATGCGTCGCTTTTTTGTCACCTTGAGGCGATCAAAGGACTTGTCACCCTGAGTTGCACCTTACGCTTTGAAAACACCGATAAAAACACCCATTTAGATATTCATTTCCCAAGTATTTTTCTTGAGTCTTGCAAAAAGGAAGCTTCTGTTGCTGATTGCTGGGATGGAAAATCAGACTTGGACCTTGGGCTTGAGAAAAGGCCTTTCTGATAGAGAATTAACCTGCAAGGTGACTCTTGTTGCGATGTTTTGTTTAGTAGGGGGAAGTCTCTTCAGTAGCATTATTTGGTCTCTTGAAAAGTCTGTTCTTACTCGTTTAAGTCTGCCTTTGTGAACCTTGATTACATGCGCAGTAGTACAAACTCAGCTTTGATCAGCCTATCTGGAAACTTAGCAAGCTGTAGAAAGTAGAAGTTTTCCTTTGGTCTTCAGCATATAGAAGGATAAAAAAGCTTTTTTTGCTTGGATAGGAAGGCCACTAGAAGAATTTTTTATAAACTAATAGAAGTTGAAAAATTTGTAGTGAAGGTGCTCACACTATCAACGGGCCTCTAAAATTTTAAAACTTCTCAAATGCACTTATATAAACTACTTAGTTTAATTAACAGTACCATCAGAAAAACCCAACATGTTGGACCTCTTTTGGTAACTAACCCCCATAACAATCCAACATGTTTTGAGGATGTATTGAGTTTGAACATGAATTGTCAGAAGTTGGAATTCTTGGGATCGAACTTGATCCGTATGTTTGCTTCATTAGTGATGAATTTGGATTGCAAGTTTGGTGATTGGCCACTTAATGGTGAGTGTAAATCCTTGTCATTTTTTCGTTTCCATCATTTAAAAAATTTAGGAAAGCCTCTTCTCATGCATCTCTAACGGTGGTTGATAGATTCTCATTCAAGCTACATCGTTCTAACCTTCCCATCAACTTTGTGGATGAGCAACAATTAAAGGGGTTGGTTGCAATCTTAGATGGATGAGGTAAGTTAACTTCTGAAGGAGTTTTTAAGTATTGTTAACCTAAAATGGAATAATTTAGCCAGCATTCTCATTCAAGGAACATTGTTCCGACCTTCCCATCAACTTTGTGGATAAGCAACAACTAAAGGGGTTCTTAATCTTAGATGGGGATGAAGTAAGTTAACTTTGGAAGGAGGTTTACGGATTGTTAACCTAAAATGGAATAATTTATCCTTGCTGGCTAAATGGATTTGGAGATTTTATAAAGAGAAATCCACCCTGTTCAGGCAAGTTATTGATTCAGTCATCACTTGCAAAGTTGGTGATGTTATTATTGTTATTTTTTTTATGTTCGTAAGTGTCCAGGTCAGCTTACGTGCACCTTGACTAATTTCAAGACAATCTGCCTGATCCTCAAGGTCGGTAATGTTAAGACACTCCTGATTTATGGATTTGTATTGAGGCTCTGAAATATATCTTTCCTTGCTTACTATTACACAGGGTTGATTGTCTTGTAGCTGAAATGTGGAATGAACCTTTGGCATTTTGGGATTTCTTACCTAGGAGAGATTTGACGTAAGGAGAAACTGGGATTGGGCCAGCCTTCATAAGCTCTCGTCAGTTGGTGTGAATCTCACAATGAATCCTTTGACATATGGTGCTGGAATTTAGAGATGGATCGGTTTCTTTTTTTCCTTCTCAAAATCTCTTTCCAAGTTGTTAGCTTTGATTAGACAATTGGGCCGTAAAGATCTATCTAAGCATTTAGAAAGAATTATACCACCAAAGGATGAAGTTCTTTATAGGAAAGTCAAGTCACTCATGTTTTAATATTTACAACAACCTTCAAATGCAATCTCCTTGGATATCCATCTCTTCTAACTGCTGCATTTTGTGCAAAGTCGTAGGGGATTTGTTTAGTCATCTCTTATTTTGGTGCAAACAAGCCAAAATCTTTCGAACTTCATTTGTCAAAAGTTTACGTGGCAGATTTCCTTTTATTTTGACGTTGGGACATTCTCCCTCTTGTTAGACTTCTTCAAGAAAGAGAAGAAGATTCTTTGTCTAAACGTTGTTTGAGATCTCTTGTGATCTGGTTGGAGTGCAATTCTAGTACCTTCATAGATAGGGAACAAGACCTCCCATCTTTTTTAACATCTTTTAAGTACTTATCCTTTAATAGGTGTAAATTGATCCCAAATTTGACTATTTGTAAATATAGTTTATCAAATCTCATGATTGGAGATGTTTCTTTGGTAATCTATTGGATATGATCTCACCTTTTGTAATTTCATCTAGTCAATGCTATTGTTTCCGTTCAAATGAAAACCAACATGTTTTGAAATACCAATAGAAGAACTTAAATCAACCGCTCTTGGGGGAAGAGCATCCAACTTTGAGTGGTTTTCTGTCTTTAGAGTTTTGATAATGGGGAAAGGCCTCATTGAGATCACCTTGGAGATAATACTAACCGTTGACAGAAAACAGTATTTGGGAGTATTCCAAATAGTGTTAGTTAAAGACAAAATAGTTTAGTAATTTTTGAGTTTTGACCATTTGTAATATGATCTCTACCGATCATCATGGGTTGACCTAGTGGTTAAAATGGAGACGAGACGGTCTCTATAAATGGATAAGAGGTCATGGGTTCAATCCGTACCTAGGCATTAATATCTTATGAGTTTACTTGACACCAAAATGTTGTAATGTGTTTTGTGAGATTATTCGAAGTGCTCGTATATTGACCTAGACATTCATGGATATAAAAAGAAATGTATTTTTAGTTTAATGTTTAACACTTCAAAAATATGTAATAAACACCTCTTTTCTTCTAGATTGTACTTTTACTTCCATGATATGTAAAATCCCTGCAAAGAAGTTTCATTGCGAGTATCTTTCTAATACCCACTTCCAATGTAATGTAACTATACTAGACGCACAAATTCTTGCTACTGCCCTAAACTAGCATTTGCTGATTGCAGTTAGTTACTTCTTAAAATACATTTTCTGAAGATTTATTTTAGTTCCCAAAATGCATTGGACAGCTTTTCTTGCTTTTAACTTGGAGTGAACTTTCTCTACCTCTTCGTAGCTATTAGATGCAACTACAGCATACCAATCCTCATGTCACATTGGAGGAAATTCTTGTAGTTACAGTCACATATAAGAATTCTCTTGTAACCTACTTCATCAATCAATGAACAGAATTCTTGGGGACGTGAGGTTTAATGTTTCAGTTATTAGGGTATCAGTTGCAAGACCATTTTGTAATTATGATATCAAACTATTTCTTTTGGACTGGAGTCCCTTCTATAGTTAATGTTGAGCTCTTGTCTTCTGGGCCGTATGTTTGTTTGCCCTTGTACTCTTTCATTTTTTCAATGGAAATTGGTCTTAAAAGAAAAAGGAAGAAAAAAGGAACAAAGGGAAAAAGTTACATATTGTTTAGATTTGTTAAAATTTTCATGCTGTCCTTTGGAAATTGTACTTCTAACATGTTTGATGAAAAGAAACATAATCTGCTTTGATTAGTAATATTAAGATTTGTTGGGTATATGCAGGTCTGAATCTGGTCGTAATGCTACTTCCAACGTGGTTAACTCTTTTCCTGGGTAAGTTCTAACTAGACATTGCTTTTGGCATGAGATTTTTATATTCAATAGCAGAGTAGCTGGGTTTTATTATTACTATTATTATTTTGTTCTGGGATTGTTTTACTGCCTGATAGTTGGATTGGTTTTGAAGTCATTTGTTCTTGGTTACTCATATCTTTGATTTTCATAGGGGTGTTAGAATTGGGAGTTATATTTTCTCTACCTGTTTGGAAGTGTGGGAAACAAGCTACTGAAATATTACCACCTTTTTGCTTTCCTTTTCTAATTTTTTTTTATGATTGAAAATTATTTGGTATGATAATATTTAATACATTTTTTAGAATAAGAAAATAGAACTGATAACAAATGTTTCGCAATACTTTTGTGTTTGTTTCCTAAATTTTTATGAATCAACTCTTTAAATATGCCCCAATTATTTTTGAAAATTAATATGAGGAAAAGATATGAAAATTAAAAAACAGAACTTTTCTTCTAGTTTTCTGTAAGGTCAAATTTACGTTCAGTCTTAACTTTTTTGTTTTTGTTACTAAATTTTAAAAAGTGTCTCATAAGTCTTTTTTATTATTATTTTTCTATTAATGAGAAACAAGAACGTAACCTATAGGCCTATGGGATGAGAGGTCCCTAAGCCTTAATTGTTCTCTAATGTGTATTTTAAGAAGAATTGTGCAAAGTTCTCCACGTGGAGGCCATAAGTTGTACGTTTTCATCAAGTGTCAGTAAGTCCTTATCTTTCAACTATTGTGTATAATAAGTTGTTGACTTATTCAATATTTTCTTTAAAATTCATGGATCTACTAGAATACAAAATTGAAGGTTTTGGGTTCAAATTCAACTTTATATCTAATTGAACATAAACTTTCTTCAAAAATTGATTATTCTAGGCACTTGTTTGACATAAAATTGTTGGAAGTTCAAAGAAAGCAATCAGTGTGTAGGATATTCGATCTCTTGGAACTGGATGAGTTTGAGGCCATTCTTGATAGTAGTCACTGAAAGTATCCTTTGAAAGGTTTTGAAAAGTGTAGGTTAAGTGGGAAATGAAGTGAGATGAATCAACTTTGGTTGTTCTTATTACTGTATGGGTTTATTGAAACTTTTGTGTTTTGTATAGTCCAAGCCATCGTGGAGGCCTGAGGAATGCTCGTGGCCGTGGGCGAGGTGCTTGGAGCCGTGGTGTAGGTCTAGGAGGAGGAAGTGGAGGAGGCCGTGGCCGAGGGCGTGGTCGTGGCCGTGGGCAAGGAAGGAAAAAACCTGTAGAGAAGTCCTCAGATGAACTTGACAAGGAGCTTGAAAACTACCATGCAGAAGCCATGCAAACCTGAGGAGAGGAACCTTGGTCGAATGTGCAAAAGTTGAAGTATGATCCGATTAACTTGTGTTAGTAACAATATATATTGCATTCTCGGGTGATTATTTTGTTATTATTAGTTTACATGTTTATTTTATTTTATTTTTTTTTACTTCGGTAGACTAGATATGTATTTTGCCTGTTAAATGTTAATGGAGATGATAATACTGTTCGACCCTCTATTATCAAAACTATCTTTTTGGTTGATCCTGAATGAATCGAGCTTGGGATCATCAATCTCTCGAATAGGTAAAAAATTTCTTTATGTATAAAAGGATTAAGTTGTTTCTTTTGAACTTCCCCTTCTCTTTTATTTCCTTCTTGTCTCCTATCGAACAAAGATGTTGCAAACTTCTTAATCAGGTTCATATATTTTTGGCTGATTGAAGTTTATATTTTGCTTTATTGCTGGACTGCAATTTGATCAGTTGAATTGATTGTTTCATTTGAACTATTGACATTGTGGTATCAACTTTATCAAAATTTTACCAATATATGGAGGATGTTTGTCTTAGTGTAAACTTAGGAAACACTAATTCGATGC

mRNA sequence

ATGACTACTCCTTTGGATATGTCACTAGAGGATGTGATAAAGAAGAATAATCGTGAAAAGCTTAGAGCACGAGGTAGGGCCCGTCGTGGGCGTGGAGCAGGTGGGTCTTTTAATGGTGGAAGAGGAGTAGTGATAGGATCAGTTCGTAGAGGTCCTCTCGGCATAAATGCACGGGCATCTGCTTACTCAATTCGCAAGCCCCCACACAGAATGAAGAATGTTCAATGGCAGCATGATTTATTCGAAGATAGTCTTAGAGCTTCAGGGATTTCTGGAATTCAAATTGGCACAAAGTTGTACGTTTCCAACTTGGATTATGGGGTAACCAAAGAAGATATAAAGGAGTTGTTCTCTGAAATTGGAGACGTGAAAAGATTTGCAATTCATTATGACAAAAATGGTCGTCCAAGTGGCTCAGCTGAGGTGGTATATACTCGGCGAAGTGATGCATTTGCTGCTCTGAAGCGCTATAACAATGTGTTATTGGATGGGAAGCCAATGAAGATTGAAATGCTTGGTGATAATGCTGAAATGCCGGTTTCTGCACGTATAAATGTTACTGGAACAAATGGAAGAAACAGGAGGACAGTTGTTTTAACGTCTGAATCTGGTCGTAATGCTACTTCCAACGTGGTTAACTCTTTTCCTGGTCCAAGCCATCGTGGAGGCCTGAGGAATGCTCGTGGCCGTGGGCGAGGTGCTTGGAGCCGTGGTGTAGGTCTAGGAGGAGGAAGTGGAGGAGGCCGTGGCCGAGGGCGTGGTCGTGGCCGTGGGCAAGGAAGGAAAAAACCTGTAGAGAAGTCCTCAGATGAACTTGACAAGGAGCTTGAAAACTACCATGCAGAAGCCATGCAAACCTGA

Coding sequence (CDS)

ATGACTACTCCTTTGGATATGTCACTAGAGGATGTGATAAAGAAGAATAATCGTGAAAAGCTTAGAGCACGAGGTAGGGCCCGTCGTGGGCGTGGAGCAGGTGGGTCTTTTAATGGTGGAAGAGGAGTAGTGATAGGATCAGTTCGTAGAGGTCCTCTCGGCATAAATGCACGGGCATCTGCTTACTCAATTCGCAAGCCCCCACACAGAATGAAGAATGTTCAATGGCAGCATGATTTATTCGAAGATAGTCTTAGAGCTTCAGGGATTTCTGGAATTCAAATTGGCACAAAGTTGTACGTTTCCAACTTGGATTATGGGGTAACCAAAGAAGATATAAAGGAGTTGTTCTCTGAAATTGGAGACGTGAAAAGATTTGCAATTCATTATGACAAAAATGGTCGTCCAAGTGGCTCAGCTGAGGTGGTATATACTCGGCGAAGTGATGCATTTGCTGCTCTGAAGCGCTATAACAATGTGTTATTGGATGGGAAGCCAATGAAGATTGAAATGCTTGGTGATAATGCTGAAATGCCGGTTTCTGCACGTATAAATGTTACTGGAACAAATGGAAGAAACAGGAGGACAGTTGTTTTAACGTCTGAATCTGGTCGTAATGCTACTTCCAACGTGGTTAACTCTTTTCCTGGTCCAAGCCATCGTGGAGGCCTGAGGAATGCTCGTGGCCGTGGGCGAGGTGCTTGGAGCCGTGGTGTAGGTCTAGGAGGAGGAAGTGGAGGAGGCCGTGGCCGAGGGCGTGGTCGTGGCCGTGGGCAAGGAAGGAAAAAACCTGTAGAGAAGTCCTCAGATGAACTTGACAAGGAGCTTGAAAACTACCATGCAGAAGCCATGCAAACCTGA

Protein sequence

MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARASAYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFSEIGDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPVSARINVTGTNGRNRRTVVLTSESGRNATSNVVNSFPGPSHRGGLRNARGRGRGAWSRGVGLGGGSGGGRGRGRGRGRGQGRKKPVEKSSDELDKELENYHAEAMQT

Homology

[Close]

BLAST of CsaV3_3G020960 vs. NCBI nr
Match: XP_004145851.1 (PREDICTED: THO complex subunit 4D [Cucumis sativus])

HSP 1 Score: 458.0 bits (1177), Expect = 2.4e-125
Identity = 286/286 (100.00%), Postives = 286/286 (100.00%), Query Frame = 0


Query: 1   MTTPLDMSLEDVIKKNNREKLRAXXXXXXXXXXXGSFNGGRGVVIGSVRRGPLGINARAS 60
           MTTPLDMSLEDVIKKNNREKLRAXXXXXXXXXXXGSFNGGRGVVIGSVRRGPLGINARAS
Sbjct: 1   MTTPLDMSLEDVIKKNNREKLRAXXXXXXXXXXXGSFNGGRGVVIGSVRRGPLGINARAS 60

Query: 61  AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFSEI 120
           AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFSEI
Sbjct: 61  AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFSEI 120

Query: 121 GDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 180
           GDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV
Sbjct: 121 GDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 180

Query: 181 SARINVTGTNGRNRRTVVLTSESGRNATSNVVNSFPGPSHRGGLRNARXXXXXXXXXXXX 240
           SARINVTGTNGRNRRTVVLTSESGRNATSNVVNSFPGPSHRGGLRNARXXXXXXXXXXXX
Sbjct: 181 SARINVTGTNGRNRRTVVLTSESGRNATSNVVNSFPGPSHRGGLRNARXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXPVEKSSDELDKELENYHAEAMQT 287
           XXXXXXXXXXXXXXXXXXXXXXXPVEKSSDELDKELENYHAEAMQT
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXPVEKSSDELDKELENYHAEAMQT 286

[Close]

BLAST of CsaV3_3G020960 vs. NCBI nr
Match: XP_008457020.1 (PREDICTED: THO complex subunit 4D [Cucumis melo])

HSP 1 Score: 445.3 bits (1144), Expect = 1.6e-121
Identity = 280/286 (97.90%), Postives = 282/286 (98.60%), Query Frame = 0


Query: 1   MTTPLDMSLEDVIKKNNREKLRAXXXXXXXXXXXGSFNGGRGVVIGSVRRGPLGINARAS 60
           MTTPLDMSLEDVIKKNNREKLRAXXXXXXXXXXXGSFNGGRGVVIGSVRRGPLGINARAS
Sbjct: 1   MTTPLDMSLEDVIKKNNREKLRAXXXXXXXXXXXGSFNGGRGVVIGSVRRGPLGINARAS 60

Query: 61  AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFSEI 120
           AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDI+ELFSEI
Sbjct: 61  AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIRELFSEI 120

Query: 121 GDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 180
           GD+KRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV
Sbjct: 121 GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 180

Query: 181 SARINVTGTNGRNRRTVVLTSESGRNATSNVVNSFPGPSHRGGLRNARXXXXXXXXXXXX 240
           SARINVTGTNGRNRRTVVLT ESGRNAT NVVN FPGPSHRGGLRNAR XXXXXXXXXXX
Sbjct: 181 SARINVTGTNGRNRRTVVLTPESGRNATFNVVNPFPGPSHRGGLRNAR-XXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXPVEKSSDELDKELENYHAEAMQT 287
           XXXXXXXXXXXXXXXXXXXXXXXPVEKSSDELDKELENYHAEAMQT
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXPVEKSSDELDKELENYHAEAMQT 285

[Close]

BLAST of CsaV3_3G020960 vs. NCBI nr
Match: XP_023527122.1 (THO complex subunit 4D [Cucurbita pepo subsp. pepo])

HSP 1 Score: 404.4 bits (1038), Expect = 3.1e-109
Identity = 260/295 (88.14%), Postives = 269/295 (91.19%), Query Frame = 0


Query: 1   MTTPLDMSLEDVIKKNNREKLRAXXXXXXXXXXXGSFNGGRGVVIGSVRRGPLGINARAS 60
           M TPLDMSLEDVIKKNNREKLRA  XXXXXXXXXGS+NGGR VVIGSVRRGPLGINAR S
Sbjct: 1   MATPLDMSLEDVIKKNNREKLRARGXXXXXXXXXGSYNGGRAVVIGSVRRGPLGINARPS 60

Query: 61  AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFSEI 120
           A+SI KPP RMKNVQWQHDLFEDSLRASGISGI+IGTKLYVSNLDYGVTKEDI+ELFSEI
Sbjct: 61  AFSISKPPRRMKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI 120

Query: 121 GDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 180
           GD+KRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNA+ PV
Sbjct: 121 GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNADTPV 180

Query: 181 SARINVTGTNGRNRRTVVLTSESGRNATSNVVNSFPGPSHRGGLRNA---------RXXX 240
           SARINVTG NGR+RRTVVLTSESGR  +SN VN FPGPSHRGGLR+           XXX
Sbjct: 181 SARINVTGVNGRSRRTVVLTSESGRTGSSNAVNPFPGPSHRGGLRSGXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVEKSSDELDKELENYHAEAMQT 287
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VEKSS ELDKELENYHAEAMQT
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEKSSAELDKELENYHAEAMQT 295

[Close]

BLAST of CsaV3_3G020960 vs. NCBI nr
Match: XP_022935328.1 (THO complex subunit 4D-like [Cucurbita moschata] >XP_022935329.1 THO complex subunit 4D-like [Cucurbita moschata] >XP_022935330.1 THO complex subunit 4D-like [Cucurbita moschata])

HSP 1 Score: 402.5 bits (1033), Expect = 1.2e-108
Identity = 259/295 (87.80%), Postives = 269/295 (91.19%), Query Frame = 0


Query: 1   MTTPLDMSLEDVIKKNNREKLRAXXXXXXXXXXXGSFNGGRGVVIGSVRRGPLGINARAS 60
           M TPLDMSLEDVIKKNNREKLRA  XXXXXXXXXGS+NGGR VVIGSVRRGPLGINAR S
Sbjct: 1   MATPLDMSLEDVIKKNNREKLRARGXXXXXXXXXGSYNGGRAVVIGSVRRGPLGINARPS 60

Query: 61  AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFSEI 120
           A+SI KPP RMKNVQWQHDLFEDSLRASGISGI+IGTKLYVSNLDYGVTKEDI+ELFSEI
Sbjct: 61  AFSISKPPRRMKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI 120

Query: 121 GDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 180
           GD+KRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNA+ PV
Sbjct: 121 GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNADTPV 180

Query: 181 SARINVTGTNGRNRRTVVLTSESGRNATSNVVNSFPGPSHRGGLRNA---------RXXX 240
           SARINVTG NGR+RRTVVLTSESGR  +S+ VN FPGPSHRGGLR+           XXX
Sbjct: 181 SARINVTGVNGRSRRTVVLTSESGRTGSSHAVNPFPGPSHRGGLRSGXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVEKSSDELDKELENYHAEAMQT 287
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VEKSS ELDKELENYHAEAMQT
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEKSSAELDKELENYHAEAMQT 295

[Close]

BLAST of CsaV3_3G020960 vs. NCBI nr
Match: XP_022982649.1 (THO complex subunit 4D-like [Cucurbita maxima] >XP_022982650.1 THO complex subunit 4D-like [Cucurbita maxima] >XP_022982651.1 THO complex subunit 4D-like [Cucurbita maxima])

HSP 1 Score: 400.6 bits (1028), Expect = 4.5e-108
Identity = 260/305 (85.25%), Postives = 269/305 (88.20%), Query Frame = 0


Query: 1   MTTPLDMSLEDVIKKNNREKLRAXXXXXXXXXXXGSFNGGRGVVIGSVRRGPLGINARAS 60
           M TPLDMSLEDVIKKNNREKLRA  XXXXXXXXXGS+NGGR VVIGSVRRGPLGINAR S
Sbjct: 1   MATPLDMSLEDVIKKNNREKLRARGXXXXXXXXXGSYNGGRAVVIGSVRRGPLGINARPS 60

Query: 61  AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFSEI 120
           A+SI KPP RMKNVQWQHDLFEDSLRASGISGI+IGTKLYVSNLDYGVTKEDI+ELFSEI
Sbjct: 61  AFSISKPPRRMKNVQWQHDLFEDSLRASGISGIEIGTKLYVSNLDYGVTKEDIRELFSEI 120

Query: 121 GDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 180
           GD+KRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNA+ PV
Sbjct: 121 GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNADTPV 180

Query: 181 SARINVTGTNGRNRRTVVLTSESGRNATSNVVNSFPGPSHRGGLRNA------------- 240
           SARINVTG NGR+RRTVVLTSESGR  +SN VN FPGPSHRGGLR+              
Sbjct: 181 SARINVTGVNGRSRRTVVLTSESGRTGSSNAVNPFPGPSHRGGLRSGXXXXXXXXXXXXX 240

Query: 241 ------RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVEKSSDELDKELENYHA 287
                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VEKSS ELDKELENYHA
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEKSSAELDKELENYHA 300

[Close]

BLAST of CsaV3_3G020960 vs. TAIR10
Match: AT5G37720.1 (ALWAYS EARLY 4)

HSP 1 Score: 224.9 bits (572), Expect = 6.2e-59
Identity = 155/315 (49.21%), Postives = 203/315 (64.44%), Query Frame = 0


Query: 1   MTTPLDMSLEDVIKKNNREKLRAXXXXXXXXXXXGSFNGGRG-------------VVIGS 60
           M+  L+M+L++++K+    +                 +GGRG                  
Sbjct: 1   MSGALNMTLDEIVKRGKTAR-----------------SGGRGXXXXXXXXXXXXXXXXXX 60

Query: 61  VRRGPLGINARASAYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYG 120
            RRGPL +NAR S+++I KP  R++++ WQ  LFED LRA+G SG+++GT+L+V+NLD G
Sbjct: 61  ARRGPLAVNARPSSFTINKPVRRVRSLPWQSGLFEDGLRAAGASGVEVGTRLHVTNLDQG 120

Query: 121 VTKEDIKELFSEIGDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPM 180
           VT EDI+ELFSEIG+V+R+AIHYDKNGRPSG+AEVVY RRSDAF ALK+YNNVLLDG+PM
Sbjct: 121 VTNEDIRELFSEIGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALKKYNNVLLDGRPM 180

Query: 181 KIEMLGDN--AEMPVSAR--INVTGTNGRNRRTVVLT-----------SESGRNATSNVV 240
           ++E+LG N  +E P+S R  +NVTG NGR +RTVV+               GR     V 
Sbjct: 181 RLEILGGNNSSEAPLSGRVNVNVTGLNGRLKRTVVIQQGGGGRGRVRGGRGGRGPAPTVS 240

Query: 241 NSFPGPSHR-GGLRNARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVEKSSDE 287
              P  + + GG+R  R           X   XXXXXXXXXXXXXXXXXXXX VEKS+ +
Sbjct: 241 RRLPIHNQQGGGMRGGR-----------XGFRXXXXXXXXXXXXXXXXXXXXXVEKSAAD 287

[Close]

BLAST of CsaV3_3G020960 vs. TAIR10
Match: AT1G66260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 213.0 bits (541), Expect = 2.4e-55
Identity = 161/305 (52.79%), Postives = 211/305 (69.18%), Query Frame = 0


Query: 1   MTTPLDMSLEDVIKKNNREK------------LRAXXXXXXXXXXXGSFNGGRGVVIGSV 60
           M+  L+M+L++++KK+  E+             ++ XXXXX XX  G   GG     G V
Sbjct: 1   MSDALNMTLDEIVKKSKSERSAAARSGGKGVSRKSGXXXXXPXXVVGXXRGG-----GPV 60

Query: 61  RRGPLGINAR-ASAYSIRKPPHRMKNVQW--QHDLFEDSLRASGISGIQIGTKLYVSNLD 120
           RRGPL +N R +S++SI K   R +++ W  Q+DL+E++LRA G+SG+++GT +Y++NLD
Sbjct: 61  RRGPLAVNTRPSSSFSINKLARRKRSLPWQNQNDLYEETLRAVGVSGVEVGTTVYITNLD 120

Query: 121 YGVTKEDIKELFSEIGDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGK 180
            GVT EDI+EL++EIG++KR+AIHYDKNGRPSGSAEVVY RRSDA  A+++YNNVLLDG+
Sbjct: 121 QGVTNEDIRELYAEIGELKRYAIHYDKNGRPSGSAEVVYMRRSDAIQAMRKYNNVLLDGR 180

Query: 181 PMKIEMLGDNAE-MPVSARINVTGTNGRNRRTV-----VLTSESGRNATSNVVNSFPGPS 240
           PMK+E+LG N E  PV+AR+NVTG NGR +R+V     V     GR   S       GPS
Sbjct: 181 PMKLEILGGNTESAPVAARVNVTGLNGRMKRSVFIGQGVRGGRVGRGRGS-------GPS 240

Query: 241 HRGGLRNARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVEKSSDELDKELENY 285
            R  L   +           XXXXXXXXXXXXXXXXXXXXXXXX  EKS+ +LDK+LE+Y
Sbjct: 241 GR-RLPLQQNQQGGVTAGRGXXXXXXXXXXXXXXXXXXXXXXXXXXEKSAADLDKDLESY 292

[Close]

BLAST of CsaV3_3G020960 vs. TAIR10
Match: AT5G02530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 148.3 bits (373), Expect = 7.3e-36
Identity = 89/191 (46.60%), Postives = 118/191 (61.78%), Query Frame = 0


Query: 1   MTTPLDMSLEDVIKKNNREKLRAXXXXXXXXXXXGSFNGGRGVVIGSVRRGPLGINARAS 60
           M+  LDMSL+D+I K+NR+   +       XXXX              RR    + AR +
Sbjct: 1   MSGGLDMSLDDII-KSNRKPTGSRGRGGIGXXXXXXXXXXXXXXXXXSRRFANRVGARTA 60

Query: 61  AYSIRKPPHRMKNVQWQHDLF--EDSLRAS----------GISGIQIGTKLYVSNLDYGV 120
            YS      +  +  WQ+D+F  + S+ A+          G S I+ GTKLY+SNLDYGV
Sbjct: 61  PYSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGV 120

Query: 121 TKEDIKELFSEIGDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMK 180
           + EDIKELFSE+GD+KR+ IHYD++GR  G+AEVV++RR DA AA+KRYNNV LDGK MK
Sbjct: 121 SNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMK 180

[Close]

BLAST of CsaV3_3G020960 vs. TAIR10
Match: AT5G59950.5 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 146.0 bits (367), Expect = 3.6e-35
Identity = 81/181 (44.75%), Postives = 110/181 (60.77%), Query Frame = 0


Query: 1   MTTPLDMSLEDVIKKNNREKLRAXXXXXXXXXXXGSFNGGRGVVIGSVRRGPLGINARAS 60
           M+T LDMSL+D+I KN + +           XXX                 P   + R++
Sbjct: 1   MSTGLDMSLDDMIAKNRKSR---------GGXXXXXXXXXXXXXXXXXXNNPNRKSTRSA 60

Query: 61  AYSIRKPPHRMKNVQWQHDLF----EDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKEL 120
            Y   K P       W HD+F    ED       +GI+ GTKLY+SNLDYGV  EDIKEL
Sbjct: 61  PYQSAKAPES----TWGHDMFSDRSEDHRSGRSSAGIETGTKLYISNLDYGVMNEDIKEL 120

Query: 121 FSEIGDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNA 178
           F+E+G++KR+ +H+D++GR  G+AEVVY+RR DA AA+K+YN+V LDGKPMKIE++G N 
Sbjct: 121 FAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNL 168

[Close]

BLAST of CsaV3_3G020960 vs. TAIR10
Match: AT5G44200.1 (CAP-binding protein 20)

HSP 1 Score: 58.9 bits (141), Expect = 5.8e-09
Identity = 30/103 (29.13%), Postives = 57/103 (55.34%), Query Frame = 0


Query: 69  HRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFSEIGDVKRFAI 128
           +R +      + F+++LRAS        T +Y+ N+ +  T+E + ELFS  G++K+  +
Sbjct: 14  YRDRRFSGTQEEFDEALRAS--------TTVYIGNVSFYTTEEQLYELFSRAGEIKKIIM 73

Query: 129 HYDKNGR-PSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIE 171
             DKN + P G   V++  R D   A+K  +  +LD +P++++
Sbjct: 74  GLDKNTKTPCGFCFVLFYSREDTEDAVKYISGTILDDRPIRVD 108

[Close]

BLAST of CsaV3_3G020960 vs. Swiss-Prot
Match: sp|Q6NQ72|THO4D_ARATH (THO complex subunit 4D OS=Arabidopsis thaliana OX=3702 GN=ALY4 PE=1 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 1.1e-57
Identity = 155/315 (49.21%), Postives = 203/315 (64.44%), Query Frame = 0


Query: 1   MTTPLDMSLEDVIKKNNREKLRAXXXXXXXXXXXGSFNGGRG-------------VVIGS 60
           M+  L+M+L++++K+    +                 +GGRG                  
Sbjct: 1   MSGALNMTLDEIVKRGKTAR-----------------SGGRGXXXXXXXXXXXXXXXXXX 60

Query: 61  VRRGPLGINARASAYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYG 120
            RRGPL +NAR S+++I KP  R++++ WQ  LFED LRA+G SG+++GT+L+V+NLD G
Sbjct: 61  ARRGPLAVNARPSSFTINKPVRRVRSLPWQSGLFEDGLRAAGASGVEVGTRLHVTNLDQG 120

Query: 121 VTKEDIKELFSEIGDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPM 180
           VT EDI+ELFSEIG+V+R+AIHYDKNGRPSG+AEVVY RRSDAF ALK+YNNVLLDG+PM
Sbjct: 121 VTNEDIRELFSEIGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALKKYNNVLLDGRPM 180

Query: 181 KIEMLGDN--AEMPVSAR--INVTGTNGRNRRTVVLT-----------SESGRNATSNVV 240
           ++E+LG N  +E P+S R  +NVTG NGR +RTVV+               GR     V 
Sbjct: 181 RLEILGGNNSSEAPLSGRVNVNVTGLNGRLKRTVVIQQGGGGRGRVRGGRGGRGPAPTVS 240

Query: 241 NSFPGPSHR-GGLRNARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVEKSSDE 287
              P  + + GG+R  R           X   XXXXXXXXXXXXXXXXXXXX VEKS+ +
Sbjct: 241 RRLPIHNQQGGGMRGGR-----------XGFRXXXXXXXXXXXXXXXXXXXXXVEKSAAD 287

[Close]

BLAST of CsaV3_3G020960 vs. Swiss-Prot
Match: sp|Q94EH8|THO4C_ARATH (THO complex subunit 4C OS=Arabidopsis thaliana OX=3702 GN=ALY3 PE=1 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 4.4e-54
Identity = 161/305 (52.79%), Postives = 211/305 (69.18%), Query Frame = 0


Query: 1   MTTPLDMSLEDVIKKNNREK------------LRAXXXXXXXXXXXGSFNGGRGVVIGSV 60
           M+  L+M+L++++KK+  E+             ++ XXXXX XX  G   GG     G V
Sbjct: 1   MSDALNMTLDEIVKKSKSERSAAARSGGKGVSRKSGXXXXXPXXVVGXXRGG-----GPV 60

Query: 61  RRGPLGINAR-ASAYSIRKPPHRMKNVQW--QHDLFEDSLRASGISGIQIGTKLYVSNLD 120
           RRGPL +N R +S++SI K   R +++ W  Q+DL+E++LRA G+SG+++GT +Y++NLD
Sbjct: 61  RRGPLAVNTRPSSSFSINKLARRKRSLPWQNQNDLYEETLRAVGVSGVEVGTTVYITNLD 120

Query: 121 YGVTKEDIKELFSEIGDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGK 180
            GVT EDI+EL++EIG++KR+AIHYDKNGRPSGSAEVVY RRSDA  A+++YNNVLLDG+
Sbjct: 121 QGVTNEDIRELYAEIGELKRYAIHYDKNGRPSGSAEVVYMRRSDAIQAMRKYNNVLLDGR 180

Query: 181 PMKIEMLGDNAE-MPVSARINVTGTNGRNRRTV-----VLTSESGRNATSNVVNSFPGPS 240
           PMK+E+LG N E  PV+AR+NVTG NGR +R+V     V     GR   S       GPS
Sbjct: 181 PMKLEILGGNTESAPVAARVNVTGLNGRMKRSVFIGQGVRGGRVGRGRGS-------GPS 240

Query: 241 HRGGLRNARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVEKSSDELDKELENY 285
            R  L   +           XXXXXXXXXXXXXXXXXXXXXXXX  EKS+ +LDK+LE+Y
Sbjct: 241 GR-RLPLQQNQQGGVTAGRGXXXXXXXXXXXXXXXXXXXXXXXXXXEKSAADLDKDLESY 292

[Close]

BLAST of CsaV3_3G020960 vs. Swiss-Prot
Match: sp|Q8L719|THO4B_ARATH (THO complex subunit 4B OS=Arabidopsis thaliana OX=3702 GN=ALY2 PE=1 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.3e-34
Identity = 89/191 (46.60%), Postives = 118/191 (61.78%), Query Frame = 0


Query: 1   MTTPLDMSLEDVIKKNNREKLRAXXXXXXXXXXXGSFNGGRGVVIGSVRRGPLGINARAS 60
           M+  LDMSL+D+I K+NR+   +       XXXX              RR    + AR +
Sbjct: 1   MSGGLDMSLDDII-KSNRKPTGSRGRGGIGXXXXXXXXXXXXXXXXXSRRFANRVGARTA 60

Query: 61  AYSIRKPPHRMKNVQWQHDLF--EDSLRAS----------GISGIQIGTKLYVSNLDYGV 120
            YS      +  +  WQ+D+F  + S+ A+          G S I+ GTKLY+SNLDYGV
Sbjct: 61  PYSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGV 120

Query: 121 TKEDIKELFSEIGDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMK 180
           + EDIKELFSE+GD+KR+ IHYD++GR  G+AEVV++RR DA AA+KRYNNV LDGK MK
Sbjct: 121 SNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMK 180

[Close]

BLAST of CsaV3_3G020960 vs. Swiss-Prot
Match: sp|Q8L773|THO4A_ARATH (THO complex subunit 4A OS=Arabidopsis thaliana OX=3702 GN=ALY1 PE=1 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 6.5e-34
Identity = 81/181 (44.75%), Postives = 110/181 (60.77%), Query Frame = 0


Query: 1   MTTPLDMSLEDVIKKNNREKLRAXXXXXXXXXXXGSFNGGRGVVIGSVRRGPLGINARAS 60
           M+T LDMSL+D+I KN + +           XXX                 P   + R++
Sbjct: 1   MSTGLDMSLDDMIAKNRKSR---------GGXXXXXXXXXXXXXXXXXXNNPNRKSTRSA 60

Query: 61  AYSIRKPPHRMKNVQWQHDLF----EDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKEL 120
            Y   K P       W HD+F    ED       +GI+ GTKLY+SNLDYGV  EDIKEL
Sbjct: 61  PYQSAKAPES----TWGHDMFSDRSEDHRSGRSSAGIETGTKLYISNLDYGVMNEDIKEL 120

Query: 121 FSEIGDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNA 178
           F+E+G++KR+ +H+D++GR  G+AEVVY+RR DA AA+K+YN+V LDGKPMKIE++G N 
Sbjct: 121 FAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNL 168

[Close]

BLAST of CsaV3_3G020960 vs. Swiss-Prot
Match: sp|Q9JJW6|ALRF2_MOUSE (Aly/REF export factor 2 OS=Mus musculus OX=10090 GN=Alyref2 PE=1 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.1e-24
Identity = 68/178 (38.20%), Postives = 97/178 (54.49%), Query Frame = 0


Query: 1   MTTPLDMSLEDVIKKNNREKLRAXXXXXXXXXXXGSFNGGRGVVIGSVRRGPLGINARAS 60
           M   +DMSL+D+IK  NR + R                GGR                R +
Sbjct: 1   MADKMDMSLDDIIKL-NRNQRRVNRGGGPRRNRPAIARGGRN---------------RPA 60

Query: 61  AYSIRKP-PHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFSE 120
            YS  KP P +     WQHDLF+      G  G++ G KL VSNLD+GV+  DI+ELF+E
Sbjct: 61  PYSRPKPLPDK-----WQHDLFDSG--CGGGEGVETGAKLLVSNLDFGVSDADIQELFAE 120

Query: 121 IGDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAE 178
            G +K+ A+ YD++GR  G+A+V + RR+DA  A+K+Y  V LDG+PM I+++    +
Sbjct: 121 FGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQID 155

[Close]

BLAST of CsaV3_3G020960 vs. TrEMBL
Match: tr|A0A1S3C452|A0A1S3C452_CUCME (THO complex subunit 4D OS=Cucumis melo OX=3656 GN=LOC103496802 PE=4 SV=1)

HSP 1 Score: 445.3 bits (1144), Expect = 1.1e-121
Identity = 280/286 (97.90%), Postives = 282/286 (98.60%), Query Frame = 0


Query: 1   MTTPLDMSLEDVIKKNNREKLRAXXXXXXXXXXXGSFNGGRGVVIGSVRRGPLGINARAS 60
           MTTPLDMSLEDVIKKNNREKLRAXXXXXXXXXXXGSFNGGRGVVIGSVRRGPLGINARAS
Sbjct: 1   MTTPLDMSLEDVIKKNNREKLRAXXXXXXXXXXXGSFNGGRGVVIGSVRRGPLGINARAS 60

Query: 61  AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFSEI 120
           AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDI+ELFSEI
Sbjct: 61  AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIRELFSEI 120

Query: 121 GDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 180
           GD+KRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV
Sbjct: 121 GDLKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 180

Query: 181 SARINVTGTNGRNRRTVVLTSESGRNATSNVVNSFPGPSHRGGLRNARXXXXXXXXXXXX 240
           SARINVTGTNGRNRRTVVLT ESGRNAT NVVN FPGPSHRGGLRNAR XXXXXXXXXXX
Sbjct: 181 SARINVTGTNGRNRRTVVLTPESGRNATFNVVNPFPGPSHRGGLRNAR-XXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXPVEKSSDELDKELENYHAEAMQT 287
           XXXXXXXXXXXXXXXXXXXXXXXPVEKSSDELDKELENYHAEAMQT
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXPVEKSSDELDKELENYHAEAMQT 285

[Close]

BLAST of CsaV3_3G020960 vs. TrEMBL
Match: tr|A0A0A0L717|A0A0A0L717_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G302100 PE=4 SV=1)

HSP 1 Score: 372.5 bits (955), Expect = 8.7e-100
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0


Query: 1   MTTPLDMSLEDVIKKNNREKLRAXXXXXXXXXXXGSFNGGRGVVIGSVRRGPLGINARAS 60
           MTTPLDMSLEDVIKKNNREKLRAXXXXXXXXXXXGSFNGGRGVVIGSVRRGPLGINARAS
Sbjct: 1   MTTPLDMSLEDVIKKNNREKLRAXXXXXXXXXXXGSFNGGRGVVIGSVRRGPLGINARAS 60

Query: 61  AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFSEI 120
           AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFSEI
Sbjct: 61  AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFSEI 120

Query: 121 GDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 180
           GDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV
Sbjct: 121 GDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 180

Query: 181 SARINVTGTNGRNRRTVVLT 201
           SARINVTGTNGRNRRTVVLT
Sbjct: 181 SARINVTGTNGRNRRTVVLT 200

[Close]

BLAST of CsaV3_3G020960 vs. TrEMBL
Match: tr|W9S960|W9S960_9ROSA (RNA and export factor-binding protein 2 OS=Morus notabilis OX=981085 GN=L484_027188 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 9.7e-75
Identity = 199/300 (66.33%), Postives = 231/300 (77.00%), Query Frame = 0


Query: 1   MTTPLDMSLEDVIKKN----NREKLRAXXXXXXXXXXXGSFNGGRGVVIGSVRRGPLGIN 60
           M+TPLDMSL +VIK +    NR+++R            G F+GGR  + G VRR PL +N
Sbjct: 1   MSTPLDMSLNEVIKSSRGSGNRDRVRERGRTRRGRGPRGFFSGGR--MTGPVRRNPLAVN 60

Query: 61  ARASAYSIRKPPHRM---KNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDI 120
           A+ S Y+I K   ++   K+  W+HDLFEDS+RA+GI+GI+IGTKLYVSNLDYGVT EDI
Sbjct: 61  AQPSPYTIAKASSKLLITKSFPWRHDLFEDSIRAAGITGIEIGTKLYVSNLDYGVTNEDI 120

Query: 121 KELFSEIGDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLG 180
           +ELFSEIGD+KR+A+HYDK GRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIE++G
Sbjct: 121 RELFSEIGDLKRYAVHYDKTGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEIVG 180

Query: 181 DNAEMPVSARINVTGTNGRNRRTVVLTSESGRNATSNVVNSFPG----PSHRGGLRNARX 240
            N EMP+SAR+NV G NGR +RTVV+TS  G    S +VN   G     S RG      X
Sbjct: 181 ANGEMPISARVNVAGVNGRKKRTVVMTSGPGHIGGSALVNRGSGAAGFSSQRGXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXP---VEKSSDELDKELENYHAEAMQT 287
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    VEKS+DELDKEL+NYHAEAMQT
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKHVEKSADELDKELDNYHAEAMQT 298

[Close]

BLAST of CsaV3_3G020960 vs. TrEMBL
Match: tr|A0A2C9WC96|A0A2C9WC96_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_02G076900 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 2.8e-74
Identity = 198/286 (69.23%), Postives = 233/286 (81.47%), Query Frame = 0


Query: 1   MTTPLDMSLEDVIKKNNREKLRAXXXXXXXXXXXGSFNGGRGVVIGSVRRGPLGINARAS 60
           M T +DMSL+D+IKK N      XXXXXXXXXXXG FNGGR  ++G+VR+GPL +N+R +
Sbjct: 1   MATSVDMSLDDIIKK-NXXXXXXXXXXXXXXXXXGPFNGGR--MVGAVRKGPLSVNSRPA 60

Query: 61  AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFSEI 120
            Y+I KPP R++++ WQHDL EDS+RA+GI+G++IGTKLYVSNLDYGV+ EDI+ELFSEI
Sbjct: 61  QYTIAKPPRRIRSLPWQHDLLEDSIRAAGITGVEIGTKLYVSNLDYGVSNEDIRELFSEI 120

Query: 121 GDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 180
           GD+KR+A+HYDKNGRPSGSAEVVYTRRSDAFAALK+YNNVLLDGKPMKIE++G +AEMP 
Sbjct: 121 GDLKRYAVHYDKNGRPSGSAEVVYTRRSDAFAALKKYNNVLLDGKPMKIEIVGASAEMPF 180

Query: 181 SARINVTGTNGRNRRTVVLTSESGRNATSNVVNSFPGPSHRGGLRNARXXXXXXXXXXXX 240
           SAR+NVTG +GR +RTVV+T               PG           XXXXXXXXXXXX
Sbjct: 181 SARVNVTGVDGRRKRTVVMT---------------PGXXXXXXXXXXXXXXXXXXXXXXX 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXPVEKSSDELDKELENYHAEAMQT 287
           XXXXXXXXXXXXXXXXXXXXXX P  KS+D+LDKELENYHAEAMQT
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXQPFVKSADDLDKELENYHAEAMQT 268

[Close]

BLAST of CsaV3_3G020960 vs. TrEMBL
Match: tr|A0A1Q3C8Y3|A0A1Q3C8Y3_CEPFO (RRM_1 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_20173 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 2.6e-72
Identity = 181/288 (62.85%), Postives = 212/288 (73.61%), Query Frame = 0


Query: 1   MTTPLDMSLEDVIKKNNREKLRAXXXXXXXXXXXGSFNGGRGVVIGSVRRGPLGINARAS 60
           M + L MSL+D++K+  RE++R            G F GGR  V G+VR+GPL +NAR S
Sbjct: 1   MASSLGMSLDDMVKRTRRERVRGQGAAPRGRGPGGFFRGGR--VTGAVRKGPLAVNARPS 60

Query: 61  AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFSEI 120
            Y+I K   R ++  WQHDL EDS+RA+GI GI+IGTKLYVSNLD+GVT +DI+ELFSEI
Sbjct: 61  QYAIAKSSRRTRSFPWQHDLLEDSIRAAGIRGIEIGTKLYVSNLDHGVTNDDIRELFSEI 120

Query: 121 GDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMPV 180
           G++KR+AIHYDKNGRPSGSAEV+Y RRSDAFAALKRYNNVLLDGKPMKIE++G NAEMPV
Sbjct: 121 GELKRYAIHYDKNGRPSGSAEVIYARRSDAFAALKRYNNVLLDGKPMKIEIVGGNAEMPV 180

Query: 181 SARINVTGTNGRNR--RTVVLTSESGRNATSNVVNSFPGPSHRGGLRNARXXXXXXXXXX 240
            AR+NVTG  GR +  RTVV+T   G        N   G S RGG              X
Sbjct: 181 LARVNVTGVEGRRKRTRTVVMTPGVGGARGPAASNRGSGQSRRGG--------------X 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXPVEKSSDELDKELENYHAEAMQT 287
           XXXXXXXXXXXXXXXXXXXXXXXXX   KS+DELDKEL++YHAEAMQT
Sbjct: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXKSADELDKELDSYHAEAMQT 272

The following BLAST results are available for this feature:

BLAST of CsaV3_3G020960 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145851.1	2.4e-125	100.00	PREDICTED: THO complex subunit 4D [Cucumis sativus]	[more]
XP_008457020.1	1.6e-121	97.90	PREDICTED: THO complex subunit 4D [Cucumis melo]	[more]
XP_023527122.1	3.1e-109	88.14	THO complex subunit 4D [Cucurbita pepo subsp. pepo]	[more]
XP_022935328.1	1.2e-108	87.80	THO complex subunit 4D-like [Cucurbita moschata] >XP_022935329.1 THO complex sub...	[more]
XP_022982649.1	4.5e-108	85.25	THO complex subunit 4D-like [Cucurbita maxima] >XP_022982650.1 THO complex subun...	[more]

BLAST of CsaV3_3G020960 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G37720.1	6.2e-59	49.21	ALWAYS EARLY 4	[more]
AT1G66260.1	2.4e-55	52.79	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G02530.1	7.3e-36	46.60	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G59950.5	3.6e-35	44.75	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G44200.1	5.8e-09	29.13	CAP-binding protein 20	[more]

BLAST of CsaV3_3G020960 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q6NQ72\|THO4D_ARATH	1.1e-57	49.21	THO complex subunit 4D OS=Arabidopsis thaliana OX=3702 GN=ALY4 PE=1 SV=1	[more]
sp\|Q94EH8\|THO4C_ARATH	4.4e-54	52.79	THO complex subunit 4C OS=Arabidopsis thaliana OX=3702 GN=ALY3 PE=1 SV=1	[more]
sp\|Q8L719\|THO4B_ARATH	1.3e-34	46.60	THO complex subunit 4B OS=Arabidopsis thaliana OX=3702 GN=ALY2 PE=1 SV=1	[more]
sp\|Q8L773\|THO4A_ARATH	6.5e-34	44.75	THO complex subunit 4A OS=Arabidopsis thaliana OX=3702 GN=ALY1 PE=1 SV=1	[more]
sp\|Q9JJW6\|ALRF2_MOUSE	2.1e-24	38.20	Aly/REF export factor 2 OS=Mus musculus OX=10090 GN=Alyref2 PE=1 SV=1	[more]

BLAST of CsaV3_3G020960 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C452\|A0A1S3C452_CUCME	1.1e-121	97.90	THO complex subunit 4D OS=Cucumis melo OX=3656 GN=LOC103496802 PE=4 SV=1	[more]
tr\|A0A0A0L717\|A0A0A0L717_CUCSA	8.7e-100	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G302100 PE=4 SV=1	[more]
tr\|W9S960\|W9S960_9ROSA	9.7e-75	66.33	RNA and export factor-binding protein 2 OS=Morus notabilis OX=981085 GN=L484_027...	[more]
tr\|A0A2C9WC96\|A0A2C9WC96_MANES	2.8e-74	69.23	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_02G076900 PE=4 SV=...	[more]
tr\|A0A1Q3C8Y3\|A0A1Q3C8Y3_CEPFO	2.6e-72	62.85	RRM_1 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_20...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035979	RBD_domain_sf
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR025715	FoP_C
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G020960.1	CsaV3_3G020960.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 269..286
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 259..280
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 207..286
None	No IPR available	PANTHER	PTHR19965	RNA AND EXPORT FACTOR BINDING PROTEIN	coord: 1..283
None	No IPR available	PANTHER	PTHR19965:SF33	THO COMPLEX SUBUNIT 4D	coord: 1..283
None	No IPR available	CDD	cd12680	RRM_THOC4	coord: 97..171 e-value: 3.96475E-41 score: 137.771
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 98..170 e-value: 2.6E-19 score: 80.2
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 99..167 e-value: 8.9E-16 score: 57.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 97..174 score: 15.392
IPR025715	Chromatin target of PRMT1 protein, C-terminal	SMART	SM01218	FoP_duplication_2	coord: 221..286 e-value: 4.2E-11 score: 52.9
IPR025715	Chromatin target of PRMT1 protein, C-terminal	PFAM	PF13865	FoP_duplication	coord: 225..282 e-value: 4.7E-8 score: 33.4
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	G3DSA:3.30.70.330		coord: 91..172 e-value: 1.5E-21 score: 78.4
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	SSF54928	RNA-binding domain, RBD	coord: 91..171 coord: 52..61

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_3G020960	CSPI03G21150	Wild cucumber (PI 183967)	cpicucB144
CsaV3_3G020960	CmaCh14G008240	Cucurbita maxima (Rimu)	cmacucB0281
CsaV3_3G020960	CmoCh14G008390	Cucurbita moschata (Rifu)	cmocucB0272
CsaV3_3G020960	Cp4.1LG03g06040	Cucurbita pepo (Zucchini)	cpecucB0749
CsaV3_3G020960	CsGy3G020590	Cucumber (Gy14) v2	cgybcucB117
CsaV3_3G020960	Carg22257	Silver-seed gourd	carcucB0518
CsaV3_3G020960	Cla013218	Watermelon (97103) v1	cucwmB254
CsaV3_3G020960	MELO3C020222	Melon (DHL92) v3.5.1	cucmeB249
CsaV3_3G020960	ClCG05G011470	Watermelon (Charleston Gray)	cucwcgB241
CsaV3_3G020960	Lsi05G003560	Bottle gourd (USVL1VR-Ls)	cuclsiB231
CsaV3_3G020960	MELO3C020222.2	Melon (DHL92) v3.6.1	cucmedB247
CsaV3_3G020960	Cla97C05G093540	Watermelon (97103) v2	cucwmbB220
CsaV3_3G020960	Bhi01G001493	Wax gourd	cucwgoB304

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_3G020960	Wax gourd	cucwgoB274
CsaV3_3G020960	Silver-seed gourd	carcucB0801
CsaV3_3G020960	Cucurbita maxima (Rimu)	cmacucB0547
CsaV3_3G020960	Cucurbita moschata (Rifu)	cmocucB0532
CsaV3_3G020960	Cucurbita pepo (Zucchini)	cpecucB0686