Lsi05G003450 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G003450
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	DNA binding,ATP binding,nucleic acid bindin isoform 2
Location	chr05 : 4362221 .. 4363509 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCTAATTCTCCATCTGCCCCTAATGAATATTATGGCAGCGTTTTTGGTTATAGTTTCAAAATATTGTAATATATAGGAGAAAATTACAAAATGAGTTGTTTTCTAATCACATTATTTTAGAAAAATCATCATTACAGTTTTTAGAATCTACTTAAAATCACGACCTTACTTGAACAGGACCTGTTCTATAGGTTGTACAATTGTATCCTTGAGTTCAAACTACTTAAAATCAGGGAACAGGCAGATTAAATATACTGATTTTAAACAATATACTGAATTGTTTTACAGGATTCCTAAGGTAAGTATTAAAAATCTGTGTCTTGAAAATTGATGTAACTATTTTTGCAGGCAATGGACAGAGCCCACAGGTTGGGCCAGCGGAAGGTTGTAAACGTCCATCGACTCATAATGCGTGGAACATTAGAAGAAAAAGTTATGAACCTTCAAAAGTTTAAAGTTTCAATTGCTAATGCTGTCATCAATTCCGAGAATGCCAGTATGAAAACGATGAATACTGATCAATTGCTTGATCTTTTCACATCTGCCGAAAGCTCCAAAAAGGTATTTTACTAATTTGTTTATAGATAATGGTAAAGCAGTTGGATTTTAATCTATGAAACCTTTTCTTCTTCCCTTATGACTAAATGAAGTATTGAAAGCAGATAGGCTAGTTCTAATTTCTCACTATGTTTCTTGCTGATATCGATAACTGATGATTAACTCGGTTCATAAAATGTAGGGAGCGGCGTCAGCGTCATCTAAGCAGTCAGATGGCAACTTTGATGGAGAGGTAAAAGCAATGGGTGGAAAGAAGGGTCTGAAAGCCATCCTTGGAGGACTGGAGGAACTTTGGGACCAATCTCAATACACTGAAGAGTACAATCTTAATCAGTTCTTAGAAAAGCTTAATGGCTGAAGTCCTTGTGAACGCACCATGTACAAAGTGTATATAATGTGGGAGATGATTGTAAGGCCCAAATTTTGACAGTTTAACCAATAGGTTTCAGTCTTCCCTAAGACTCTCTTCCGTTCCAATTACTCCCCCTTTTTCCCCAGGGGCTCGTGTAGCTTTTTTCACGAATGGTCGTAGAGTATAGGGCGACGATTTACAAGAGGTGTAACGTAAGGTCTCACGATTTATGCACTTTCAGGAATGGGAAGGAAAGAGAATTTGTATATGGCGGATATTGTATATACAATTCATTTCATCTTTTAAATGAAATCCATTCTTCCATATAGCTTATTTTCAATGGAACATTGTCAAGCTTTTGCTTGCAATTGTAAGATT

mRNA sequence

TGCTAATTCTCCATCTGCCCCTAATGAATATTATGGCAGCGCAATGGACAGAGCCCACAGGTTGGGCCAGCGGAAGGTTGTAAACGTCCATCGACTCATAATGCGTGGAACATTAGAAGAAAAAGTTATGAACCTTCAAAAGTTTAAAGTTTCAATTGCTAATGCTGTCATCAATTCCGAGAATGCCAGTATGAAAACGATGAATACTGATCAATTGCTTGATCTTTTCACATCTGCCGAAAGCTCCAAAAAGGGAGCGGCGTCAGCGTCATCTAAGCAGTCAGATGGCAACTTTGATGGAGAGGTAAAAGCAATGGGTGGAAAGAAGGGTCTGAAAGCCATCCTTGGAGGACTGGAGGAACTTTGGGACCAATCTCAATACACTGAAGAGTACAATCTTAATCAGTTCTTAGAAAAGCTTAATGGCTGAAGTCCTTGTGAACGCACCATGTACAAAGTGTATATAATGTGGGAGATGATTGTAAGGCCCAAATTTTGACAGTTTAACCAATAGGTTTCAGTCTTCCCTAAGACTCTCTTCCGTTCCAATTACTCCCCCTTTTTCCCCAGGGGCTCGTGTAGCTTTTTTCACGAATGGTCGTAGAGTATAGGGCGACGATTTACAAGAGGTGTAACGTAAGGTCTCACGATTTATGCACTTTCAGGAATGGGAAGGAAAGAGAATTTGTATATGGCGGATATTGTATATACAATTCATTTCATCTTTTAAATGAAATCCATTCTTCCATATAGCTTATTTTCAATGGAACATTGTCAAGCTTTTGCTTGCAATTGTAAGATT

Coding sequence (CDS)

ATGGACAGAGCCCACAGGTTGGGCCAGCGGAAGGTTGTAAACGTCCATCGACTCATAATGCGTGGAACATTAGAAGAAAAAGTTATGAACCTTCAAAAGTTTAAAGTTTCAATTGCTAATGCTGTCATCAATTCCGAGAATGCCAGTATGAAAACGATGAATACTGATCAATTGCTTGATCTTTTCACATCTGCCGAAAGCTCCAAAAAGGGAGCGGCGTCAGCGTCATCTAAGCAGTCAGATGGCAACTTTGATGGAGAGGTAAAAGCAATGGGTGGAAAGAAGGGTCTGAAAGCCATCCTTGGAGGACTGGAGGAACTTTGGGACCAATCTCAATACACTGAAGAGTACAATCTTAATCAGTTCTTAGAAAAGCTTAATGGCTGA

Protein sequence

MDRAHRLGQRKVVNVHRLIMRGTLEEKVMNLQKFKVSIANAVINSENASMKTMNTDQLLDLFTSAESSKKGAASASSKQSDGNFDGEVKAMGGKKGLKAILGGLEELWDQSQYTEEYNLNQFLEKLNG

Homology

[Close]

BLAST of Lsi05G003450 vs. Swiss-Prot
Match: BTAF1_ARATH (TATA-binding protein-associated factor BTAF1 OS=Arabidopsis thaliana GN=BTAF1 PE=1 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 2.3e-44
Identity = 96/128 (75.00%), Postives = 107/128 (83.59%), Query Frame = 1


Query: 1    MDRAHRLGQRKVVNVHRLIMRGTLEEKVMNLQKFKVSIANAVINSENASMKTMNTDQLLD 60
            MDRAHRLGQ++VVNVHRLIMRGTLEEKVM+LQKFKVS+AN VIN+ENASMKTMNTDQLLD
Sbjct: 1923 MDRAHRLGQKRVVNVHRLIMRGTLEEKVMSLQKFKVSVANTVINAENASMKTMNTDQLLD 1982

Query: 61   LFTSAESSKKGAASASSKQSDGNFDGEVKAMGGKKGLKAILGGLEELWDQSQYTEEYNLN 120
            LF SAE+SKKG  S+     D +     +  G  KG+KAILG LEELWDQSQYTEEYNL+
Sbjct: 1983 LFASAETSKKGGGSSKKGSEDND-----QIAGTGKGMKAILGNLEELWDQSQYTEEYNLS 2042

Query: 121  QFLEKLNG 129
            QFL KLNG
Sbjct: 2043 QFLTKLNG 2045

[Close]

BLAST of Lsi05G003450 vs. Swiss-Prot
Match: BTAF1_HUMAN (TATA-binding protein-associated factor 172 OS=Homo sapiens GN=BTAF1 PE=1 SV=2)

HSP 1 Score: 121.7 bits (304), Expect = 5.8e-27
Identity = 66/126 (52.38%), Postives = 85/126 (67.46%), Query Frame = 1


Query: 1    MDRAHRLGQRKVVNVHRLIMRGTLEEKVMNLQKFKVSIANAVINSENASMKTMNTDQLLD 60
            MDRAHR+GQ++VVNV+RLI RGTLEEK+M LQKFK++IAN VI+ EN+S+++M TDQLLD
Sbjct: 1737 MDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENSSLQSMGTDQLLD 1796

Query: 61   LFTSAESSKKGAASASSKQSDGNFDGEVKAMGGKKGLKAILGGLEELWDQSQYTEEYNLN 120
            LFT  +  K   A  S+               GK  +K+IL  L +LWDQ QY  EY+L 
Sbjct: 1797 LFTLDKDGKAEKADTST--------------SGKASMKSILENLSDLWDQEQYDSEYSLE 1848

Query: 121  QFLEKL 127
             F+  L
Sbjct: 1857 NFMHSL 1848

[Close]

BLAST of Lsi05G003450 vs. Swiss-Prot
Match: MOT1_YEAST (TATA-binding protein-associated factor MOT1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MOT1 PE=1 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.7e-24
Identity = 63/131 (48.09%), Postives = 89/131 (67.94%), Query Frame = 1


Query: 1    MDRAHRLGQRKVVNVHRLIMRGTLEEKVMNLQKFKVSIANAVINSENASMKTMNTDQLLD 60
            MDRAHR+GQ+KVVNV+R+I +GTLEEK+M LQKFK++IA+ V+N +N+ + +M+T QLLD
Sbjct: 1739 MDRAHRIGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTVVNQQNSGLASMDTHQLLD 1798

Query: 61   LF-----TSAESSKKGAASASSKQSDGNFDGEVKAMGGKKGLKAILGGLEELWDQSQYTE 120
            LF     TS ++ +K    + + +   +   E    G     K  LG L+ELWD SQY E
Sbjct: 1799 LFDPDNVTSQDNEEKNNGDSQAAKGMEDIANETGLTG---KAKEALGELKELWDPSQYEE 1858

Query: 121  EYNLNQFLEKL 127
            EYNL+ F++ L
Sbjct: 1859 EYNLDTFIKTL 1866

[Close]

BLAST of Lsi05G003450 vs. Swiss-Prot
Match: MOT1_SCHPO (Probable helicase mot1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mot1 PE=1 SV=4)

HSP 1 Score: 107.8 bits (268), Expect = 8.7e-23
Identity = 61/130 (46.92%), Postives = 87/130 (66.92%), Query Frame = 1


Query: 1    MDRAHRLGQRKVVNVHRLIMRGTLEEKVMNLQKFKVSIANAVINSENASMKTMNTDQLLD 60
            MDRAHR+GQ+KVVNV+RLI RG LEEK+M LQ+FK+++A+ V+N +NA + ++ TDQ+LD
Sbjct: 1829 MDRAHRIGQKKVVNVYRLITRGCLEEKIMGLQRFKMNVASTVVNQQNAGLSSIGTDQILD 1888

Query: 61   LFTSAESSKKGAASASSKQSDGNFDGEVKAMGGKKGL----KAILGGLEELWDQSQYTEE 120
            LF +         +A  +Q+  N D E       +GL    K  L GL E+WD+SQY +E
Sbjct: 1889 LFNT---------TADEQQTVQNIDKEESEDAAGRGLSGTSKKALEGLPEMWDESQY-DE 1948

Query: 121  YNLNQFLEKL 127
            +NL+ F+  L
Sbjct: 1949 FNLDGFISTL 1948

[Close]

BLAST of Lsi05G003450 vs. TrEMBL
Match: A0A0A0LAU8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G307170 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 6.8e-59
Identity = 123/128 (96.09%), Postives = 127/128 (99.22%), Query Frame = 1


Query: 1   MDRAHRLGQRKVVNVHRLIMRGTLEEKVMNLQKFKVSIANAVINSENASMKTMNTDQLLD 60
           MDRAHRLGQRKVVNVHRLIMRGTLEEKVM+LQKFKVSIANAVINSENASMKTMNTDQLLD
Sbjct: 48  MDRAHRLGQRKVVNVHRLIMRGTLEEKVMSLQKFKVSIANAVINSENASMKTMNTDQLLD 107

Query: 61  LFTSAESSKKGAASASSKQSDGNFDGEVKAMGGKKGLKAILGGLEELWDQSQYTEEYNLN 120
           LFT+AE+SKKGAASASSKQSDG+FDGEVKAMGGKKGLKAILGGLEELWDQSQYTEEYNLN
Sbjct: 108 LFTTAETSKKGAASASSKQSDGDFDGEVKAMGGKKGLKAILGGLEELWDQSQYTEEYNLN 167

Query: 121 QFLEKLNG 129
           QFL KLNG
Sbjct: 168 QFLAKLNG 175

[Close]

BLAST of Lsi05G003450 vs. TrEMBL
Match: F6I5H6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0024g00350 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 2.9e-49
Identity = 107/128 (83.59%), Postives = 117/128 (91.41%), Query Frame = 1


Query: 1    MDRAHRLGQRKVVNVHRLIMRGTLEEKVMNLQKFKVSIANAVINSENASMKTMNTDQLLD 60
            MDRAHRLGQRKVVNVHRLIMRGTLEEKVM+LQ+FK+S+AN+VINSENASMKTMNTDQLLD
Sbjct: 1897 MDRAHRLGQRKVVNVHRLIMRGTLEEKVMSLQRFKLSVANSVINSENASMKTMNTDQLLD 1956

Query: 61   LFTSAESSKKGAASASSKQSDGNFDGEVKAMGGKKGLKAILGGLEELWDQSQYTEEYNLN 120
            LFTSAE+ KKGA  A SK+SDGNFDG+ K +G  KGLKAILGGLEELWD SQYTEEYNL+
Sbjct: 1957 LFTSAEALKKGA--AQSKRSDGNFDGDPKFVGSGKGLKAILGGLEELWDHSQYTEEYNLS 2016

Query: 121  QFLEKLNG 129
             FL KLNG
Sbjct: 2017 NFLTKLNG 2022

[Close]

BLAST of Lsi05G003450 vs. TrEMBL
Match: W9RF19_9ROSA (TATA-binding protein-associated factor 172 OS=Morus notabilis GN=L484_005161 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 1.9e-48
Identity = 105/128 (82.03%), Postives = 118/128 (92.19%), Query Frame = 1


Query: 1    MDRAHRLGQRKVVNVHRLIMRGTLEEKVMNLQKFKVSIANAVINSENASMKTMNTDQLLD 60
            MDRAHRLGQ+KVVNVHRLIMRGTLEEKVM+LQ+FK+S+ANAVIN+ENASMKTMNTDQLLD
Sbjct: 1450 MDRAHRLGQKKVVNVHRLIMRGTLEEKVMSLQRFKLSVANAVINAENASMKTMNTDQLLD 1509

Query: 61   LFTSAESSKKGAASASSKQSDGNFDGEVKAMGGKKGLKAILGGLEELWDQSQYTEEYNLN 120
            LF SAE+S+KG  ++ SKQSD  FDG+VK  G KKGLKAILGGLEELWDQ+QYTEEYNLN
Sbjct: 1510 LFASAETSRKG--TSVSKQSDIRFDGDVKLPGNKKGLKAILGGLEELWDQTQYTEEYNLN 1569

Query: 121  QFLEKLNG 129
            QFL KL+G
Sbjct: 1570 QFLSKLSG 1575

[Close]

BLAST of Lsi05G003450 vs. TrEMBL
Match: B9I6D4_POPTR (SNF2 domain-containing family protein OS=Populus trichocarpa GN=POPTR_0013s06470g PE=4 SV=2)

HSP 1 Score: 199.9 bits (507), Expect = 1.9e-48
Identity = 105/128 (82.03%), Postives = 117/128 (91.41%), Query Frame = 1


Query: 1    MDRAHRLGQRKVVNVHRLIMRGTLEEKVMNLQKFKVSIANAVINSENASMKTMNTDQLLD 60
            MDRAHRLGQ+KVVNVHRLIMRGTLEEKVM+LQKFKVS+ANAVIN+ENAS+KTMNTDQLLD
Sbjct: 1920 MDRAHRLGQKKVVNVHRLIMRGTLEEKVMSLQKFKVSVANAVINAENASLKTMNTDQLLD 1979

Query: 61   LFTSAESSKKGAASASSKQSDGNFDGEVKAMGGKKGLKAILGGLEELWDQSQYTEEYNLN 120
            LF SAE+  KGA   +SK++DG+FDG+ K MG  KGLKAILGGLEELWDQSQYTEEYNL+
Sbjct: 1980 LFASAETRAKGA--TASKRTDGSFDGDPKLMGTGKGLKAILGGLEELWDQSQYTEEYNLS 2039

Query: 121  QFLEKLNG 129
            QFL KLNG
Sbjct: 2040 QFLSKLNG 2045

[Close]

BLAST of Lsi05G003450 vs. TrEMBL
Match: B9SD95_RICCO (TATA-binding protein-associated factor MOT1, putative OS=Ricinus communis GN=RCOM_1515310 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 3.2e-48
Identity = 106/128 (82.81%), Postives = 116/128 (90.62%), Query Frame = 1


Query: 1    MDRAHRLGQRKVVNVHRLIMRGTLEEKVMNLQKFKVSIANAVINSENASMKTMNTDQLLD 60
            MDRAHRLGQ+KVVNVHRLIMRGTLEEKVM+LQKFKVS+ANAVIN+ENAS+KTMNTDQLLD
Sbjct: 1795 MDRAHRLGQKKVVNVHRLIMRGTLEEKVMSLQKFKVSVANAVINAENASLKTMNTDQLLD 1854

Query: 61   LFTSAESSKKGAASASSKQSDGNFDGEVKAMGGKKGLKAILGGLEELWDQSQYTEEYNLN 120
            LF SAE++ KG  S + K+SDGN DG+ K MG  KGLKAILGGLEELWDQSQYTEEYNLN
Sbjct: 1855 LFASAETNTKG--STALKRSDGNSDGDPKLMGTGKGLKAILGGLEELWDQSQYTEEYNLN 1914

Query: 121  QFLEKLNG 129
            QFL KLNG
Sbjct: 1915 QFLVKLNG 1920

[Close]

BLAST of Lsi05G003450 vs. TAIR10
Match: AT3G54280.2 (AT3G54280.2 DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases)

HSP 1 Score: 179.5 bits (454), Expect = 1.3e-45
Identity = 96/128 (75.00%), Postives = 107/128 (83.59%), Query Frame = 1


Query: 1    MDRAHRLGQRKVVNVHRLIMRGTLEEKVMNLQKFKVSIANAVINSENASMKTMNTDQLLD 60
            MDRAHRLGQ++VVNVHRLIMRGTLEEKVM+LQKFKVS+AN VIN+ENASMKTMNTDQLLD
Sbjct: 1954 MDRAHRLGQKRVVNVHRLIMRGTLEEKVMSLQKFKVSVANTVINAENASMKTMNTDQLLD 2013

Query: 61   LFTSAESSKKGAASASSKQSDGNFDGEVKAMGGKKGLKAILGGLEELWDQSQYTEEYNLN 120
            LF SAE+SKKG  S+     D +     +  G  KG+KAILG LEELWDQSQYTEEYNL+
Sbjct: 2014 LFASAETSKKGGGSSKKGSEDND-----QIAGTGKGMKAILGNLEELWDQSQYTEEYNLS 2073

Query: 121  QFLEKLNG 129
            QFL KLNG
Sbjct: 2074 QFLTKLNG 2076

[Close]

BLAST of Lsi05G003450 vs. NCBI nr
Match: gi|659114355|ref|XP_008457028.1| (PREDICTED: TATA-binding protein-associated factor BTAF1 [Cucumis melo])

HSP 1 Score: 237.7 bits (605), Expect = 1.2e-59
Identity = 125/128 (97.66%), Postives = 127/128 (99.22%), Query Frame = 1


Query: 1    MDRAHRLGQRKVVNVHRLIMRGTLEEKVMNLQKFKVSIANAVINSENASMKTMNTDQLLD 60
            MDRAHRLGQRKVVNVHRLIMRGTLEEKVMNLQKFKVSIANAVINSENASMKTMNTDQLLD
Sbjct: 1925 MDRAHRLGQRKVVNVHRLIMRGTLEEKVMNLQKFKVSIANAVINSENASMKTMNTDQLLD 1984

Query: 61   LFTSAESSKKGAASASSKQSDGNFDGEVKAMGGKKGLKAILGGLEELWDQSQYTEEYNLN 120
            LFTSAE+SKKGAASASSKQSDG+FDGEVKAMGGKKGLKAILGGLEELWDQSQYTEEYNLN
Sbjct: 1985 LFTSAETSKKGAASASSKQSDGDFDGEVKAMGGKKGLKAILGGLEELWDQSQYTEEYNLN 2044

Query: 121  QFLEKLNG 129
            QFL KLNG
Sbjct: 2045 QFLAKLNG 2052

[Close]

BLAST of Lsi05G003450 vs. NCBI nr
Match: gi|778680790|ref|XP_011651396.1| (PREDICTED: TATA-binding protein-associated factor BTAF1 [Cucumis sativus])

HSP 1 Score: 234.6 bits (597), Expect = 9.8e-59
Identity = 123/128 (96.09%), Postives = 127/128 (99.22%), Query Frame = 1


Query: 1    MDRAHRLGQRKVVNVHRLIMRGTLEEKVMNLQKFKVSIANAVINSENASMKTMNTDQLLD 60
            MDRAHRLGQRKVVNVHRLIMRGTLEEKVM+LQKFKVSIANAVINSENASMKTMNTDQLLD
Sbjct: 1930 MDRAHRLGQRKVVNVHRLIMRGTLEEKVMSLQKFKVSIANAVINSENASMKTMNTDQLLD 1989

Query: 61   LFTSAESSKKGAASASSKQSDGNFDGEVKAMGGKKGLKAILGGLEELWDQSQYTEEYNLN 120
            LFT+AE+SKKGAASASSKQSDG+FDGEVKAMGGKKGLKAILGGLEELWDQSQYTEEYNLN
Sbjct: 1990 LFTTAETSKKGAASASSKQSDGDFDGEVKAMGGKKGLKAILGGLEELWDQSQYTEEYNLN 2049

Query: 121  QFLEKLNG 129
            QFL KLNG
Sbjct: 2050 QFLAKLNG 2057

[Close]

BLAST of Lsi05G003450 vs. NCBI nr
Match: gi|700202664|gb|KGN57797.1| (hypothetical protein Csa_3G307170 [Cucumis sativus])

HSP 1 Score: 234.6 bits (597), Expect = 9.8e-59
Identity = 123/128 (96.09%), Postives = 127/128 (99.22%), Query Frame = 1


Query: 1   MDRAHRLGQRKVVNVHRLIMRGTLEEKVMNLQKFKVSIANAVINSENASMKTMNTDQLLD 60
           MDRAHRLGQRKVVNVHRLIMRGTLEEKVM+LQKFKVSIANAVINSENASMKTMNTDQLLD
Sbjct: 48  MDRAHRLGQRKVVNVHRLIMRGTLEEKVMSLQKFKVSIANAVINSENASMKTMNTDQLLD 107

Query: 61  LFTSAESSKKGAASASSKQSDGNFDGEVKAMGGKKGLKAILGGLEELWDQSQYTEEYNLN 120
           LFT+AE+SKKGAASASSKQSDG+FDGEVKAMGGKKGLKAILGGLEELWDQSQYTEEYNLN
Sbjct: 108 LFTTAETSKKGAASASSKQSDGDFDGEVKAMGGKKGLKAILGGLEELWDQSQYTEEYNLN 167

Query: 121 QFLEKLNG 129
           QFL KLNG
Sbjct: 168 QFLAKLNG 175

[Close]

BLAST of Lsi05G003450 vs. NCBI nr
Match: gi|719964968|ref|XP_010255046.1| (PREDICTED: TATA-binding protein-associated factor BTAF1 isoform X1 [Nelumbo nucifera])

HSP 1 Score: 204.1 bits (518), Expect = 1.4e-49
Identity = 107/128 (83.59%), Postives = 117/128 (91.41%), Query Frame = 1


Query: 1    MDRAHRLGQRKVVNVHRLIMRGTLEEKVMNLQKFKVSIANAVINSENASMKTMNTDQLLD 60
            MDRAHRLGQRKVVNVHRLIMRGTLEEKVM+LQKFK+S+ANAVIN+EN S+KTMNTDQLLD
Sbjct: 1931 MDRAHRLGQRKVVNVHRLIMRGTLEEKVMSLQKFKLSVANAVINAENTSLKTMNTDQLLD 1990

Query: 61   LFTSAESSKKGAASASSKQSDGNFDGEVKAMGGKKGLKAILGGLEELWDQSQYTEEYNLN 120
            LFT A++S+KG  SA SK SDGNFDG+ K +GG KGLKAILGGLEELWDQSQY EEYNLN
Sbjct: 1991 LFTPAQASRKG--SAVSKSSDGNFDGDSKPIGGGKGLKAILGGLEELWDQSQYAEEYNLN 2050

Query: 121  QFLEKLNG 129
            QFL KLNG
Sbjct: 2051 QFLAKLNG 2056

[Close]

BLAST of Lsi05G003450 vs. NCBI nr
Match: gi|719964979|ref|XP_010255080.1| (PREDICTED: TATA-binding protein-associated factor BTAF1 isoform X2 [Nelumbo nucifera])

HSP 1 Score: 204.1 bits (518), Expect = 1.4e-49
Identity = 107/128 (83.59%), Postives = 117/128 (91.41%), Query Frame = 1


Query: 1    MDRAHRLGQRKVVNVHRLIMRGTLEEKVMNLQKFKVSIANAVINSENASMKTMNTDQLLD 60
            MDRAHRLGQRKVVNVHRLIMRGTLEEKVM+LQKFK+S+ANAVIN+EN S+KTMNTDQLLD
Sbjct: 1907 MDRAHRLGQRKVVNVHRLIMRGTLEEKVMSLQKFKLSVANAVINAENTSLKTMNTDQLLD 1966

Query: 61   LFTSAESSKKGAASASSKQSDGNFDGEVKAMGGKKGLKAILGGLEELWDQSQYTEEYNLN 120
            LFT A++S+KG  SA SK SDGNFDG+ K +GG KGLKAILGGLEELWDQSQY EEYNLN
Sbjct: 1967 LFTPAQASRKG--SAVSKSSDGNFDGDSKPIGGGKGLKAILGGLEELWDQSQYAEEYNLN 2026

Query: 121  QFLEKLNG 129
            QFL KLNG
Sbjct: 2027 QFLAKLNG 2032

The following BLAST results are available for this feature:

BLAST of Lsi05G003450 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BTAF1_ARATH	2.3e-44	75.00	TATA-binding protein-associated factor BTAF1 OS=Arabidopsis thaliana GN=BTAF1 PE...	[more]
BTAF1_HUMAN	5.8e-27	52.38	TATA-binding protein-associated factor 172 OS=Homo sapiens GN=BTAF1 PE=1 SV=2	[more]
MOT1_YEAST	2.7e-24	48.09	TATA-binding protein-associated factor MOT1 OS=Saccharomyces cerevisiae (strain ...	[more]
MOT1_SCHPO	8.7e-23	46.92	Probable helicase mot1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN...	[more]

BLAST of Lsi05G003450 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAU8_CUCSA	6.8e-59	96.09	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G307170 PE=4 SV=1	[more]
F6I5H6_VITVI	2.9e-49	83.59	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0024g00350 PE=4 SV=...	[more]
W9RF19_9ROSA	1.9e-48	82.03	TATA-binding protein-associated factor 172 OS=Morus notabilis GN=L484_005161 PE=...	[more]
B9I6D4_POPTR	1.9e-48	82.03	SNF2 domain-containing family protein OS=Populus trichocarpa GN=POPTR_0013s06470...	[more]
B9SD95_RICCO	3.2e-48	82.81	TATA-binding protein-associated factor MOT1, putative OS=Ricinus communis GN=RCO...	[more]

BLAST of Lsi05G003450 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G54280.2	1.3e-45	75.00	DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP b...	[more]

BLAST of Lsi05G003450 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659114355\|ref\|XP_008457028.1\|	1.2e-59	97.66	PREDICTED: TATA-binding protein-associated factor BTAF1 [Cucumis melo]	[more]
gi\|778680790\|ref\|XP_011651396.1\|	9.8e-59	96.09	PREDICTED: TATA-binding protein-associated factor BTAF1 [Cucumis sativus]	[more]
gi\|700202664\|gb\|KGN57797.1\|	9.8e-59	96.09	hypothetical protein Csa_3G307170 [Cucumis sativus]	[more]
gi\|719964968\|ref\|XP_010255046.1\|	1.4e-49	83.59	PREDICTED: TATA-binding protein-associated factor BTAF1 isoform X1 [Nelumbo nuci...	[more]
gi\|719964979\|ref\|XP_010255080.1\|	1.4e-49	83.59	PREDICTED: TATA-binding protein-associated factor BTAF1 isoform X2 [Nelumbo nuci...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR027417	P-loop_NTPase

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0008152	metabolic process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0016887	ATPase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G003450.1	Lsi05G003450.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 1..65 score: 4.07
None	No IPR available	PANTHER	PTHR10799	SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED	coord: 87..120 score: 9.4E-20coord: 1..54 score: 9.4
None	No IPR available	PANTHER	PTHR10799:SF753	SUBFAMILY NOT NAMED	coord: 87..120 score: 9.4E-20coord: 1..54 score: 9.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G003450	Csa3G307170	Cucumber (Chinese Long) v2	culsiB212
Lsi05G003450	CSPI03G21290	Wild cucumber (PI 183967)	cpilsiB210
Lsi05G003450	Cucsa.375260	Cucumber (Gy14) v1	cgylsiB607
Lsi05G003450	CmaCh14G008310	Cucurbita maxima (Rimu)	cmalsiB249
Lsi05G003450	CmoCh14G008460	Cucurbita moschata (Rifu)	cmolsiB237
Lsi05G003450	Cla013208	Watermelon (97103) v1	lsiwmB361
Lsi05G003450	MELO3C020237	Melon (DHL92) v3.5.1	lsimeB368
Lsi05G003450	MELO3C020235.2	Melon (DHL92) v3.6.1	lsimedB384
Lsi05G003450	Cp4.1LG03g06030	Cucurbita pepo (Zucchini)	cpelsiB511
Lsi05G003450	CsGy3G020660	Cucumber (Gy14) v2	cgyblsiB199
Lsi05G003450	CsaV3_3G021080	Cucumber (Chinese Long) v3	cuclsiB231

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G003450	Silver-seed gourd	carlsiB464
Lsi05G003450	Silver-seed gourd	carlsiB700
Lsi05G003450	Watermelon (97103) v2	lsiwmbB329
Lsi05G003450	Wax gourd	lsiwgoB447
Lsi05G003450	Cucurbita maxima (Rimu)	cmalsiB440
Lsi05G003450	Cucurbita moschata (Rifu)	cmolsiB430
Lsi05G003450	Cucurbita pepo (Zucchini)	cpelsiB470
Lsi05G003450	Watermelon (Charleston Gray)	lsiwcgB332
Lsi05G003450	Cucumber (Gy14) v2	cgyblsiB192