Lsi05G003450.1 (mRNA) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGCTAATTCTCCATCTGCCCCTAATGAATATTATGGCAGCGTTTTTGGTTATAGTTTCAAAATATTGTAATATATAGGAGAAAATTACAAAATGAGTTGTTTTCTAATCACATTATTTTAGAAAAATCATCATTACAGTTTTTAGAATCTACTTAAAATCACGACCTTACTTGAACAGGACCTGTTCTATAGGTTGTACAATTGTATCCTTGAGTTCAAACTACTTAAAATCAGGGAACAGGCAGATTAAATATACTGATTTTAAACAATATACTGAATTGTTTTACAGGATTCCTAAGGTAAGTATTAAAAATCTGTGTCTTGAAAATTGATGTAACTATTTTTGCAGGCAATGGACAGAGCCCACAGGTTGGGCCAGCGGAAGGTTGTAAACGTCCATCGACTCATAATGCGTGGAACATTAGAAGAAAAAGTTATGAACCTTCAAAAGTTTAAAGTTTCAATTGCTAATGCTGTCATCAATTCCGAGAATGCCAGTATGAAAACGATGAATACTGATCAATTGCTTGATCTTTTCACATCTGCCGAAAGCTCCAAAAAGGTATTTTACTAATTTGTTTATAGATAATGGTAAAGCAGTTGGATTTTAATCTATGAAACCTTTTCTTCTTCCCTTATGACTAAATGAAGTATTGAAAGCAGATAGGCTAGTTCTAATTTCTCACTATGTTTCTTGCTGATATCGATAACTGATGATTAACTCGGTTCATAAAATGTAGGGAGCGGCGTCAGCGTCATCTAAGCAGTCAGATGGCAACTTTGATGGAGAGGTAAAAGCAATGGGTGGAAAGAAGGGTCTGAAAGCCATCCTTGGAGGACTGGAGGAACTTTGGGACCAATCTCAATACACTGAAGAGTACAATCTTAATCAGTTCTTAGAAAAGCTTAATGGCTGAAGTCCTTGTGAACGCACCATGTACAAAGTGTATATAATGTGGGAGATGATTGTAAGGCCCAAATTTTGACAGTTTAACCAATAGGTTTCAGTCTTCCCTAAGACTCTCTTCCGTTCCAATTACTCCCCCTTTTTCCCCAGGGGCTCGTGTAGCTTTTTTCACGAATGGTCGTAGAGTATAGGGCGACGATTTACAAGAGGTGTAACGTAAGGTCTCACGATTTATGCACTTTCAGGAATGGGAAGGAAAGAGAATTTGTATATGGCGGATATTGTATATACAATTCATTTCATCTTTTAAATGAAATCCATTCTTCCATATAGCTTATTTTCAATGGAACATTGTCAAGCTTTTGCTTGCAATTGTAAGATT TGCTAATTCTCCATCTGCCCCTAATGAATATTATGGCAGCGCAATGGACAGAGCCCACAGGTTGGGCCAGCGGAAGGTTGTAAACGTCCATCGACTCATAATGCGTGGAACATTAGAAGAAAAAGTTATGAACCTTCAAAAGTTTAAAGTTTCAATTGCTAATGCTGTCATCAATTCCGAGAATGCCAGTATGAAAACGATGAATACTGATCAATTGCTTGATCTTTTCACATCTGCCGAAAGCTCCAAAAAGGGAGCGGCGTCAGCGTCATCTAAGCAGTCAGATGGCAACTTTGATGGAGAGGTAAAAGCAATGGGTGGAAAGAAGGGTCTGAAAGCCATCCTTGGAGGACTGGAGGAACTTTGGGACCAATCTCAATACACTGAAGAGTACAATCTTAATCAGTTCTTAGAAAAGCTTAATGGCTGAAGTCCTTGTGAACGCACCATGTACAAAGTGTATATAATGTGGGAGATGATTGTAAGGCCCAAATTTTGACAGTTTAACCAATAGGTTTCAGTCTTCCCTAAGACTCTCTTCCGTTCCAATTACTCCCCCTTTTTCCCCAGGGGCTCGTGTAGCTTTTTTCACGAATGGTCGTAGAGTATAGGGCGACGATTTACAAGAGGTGTAACGTAAGGTCTCACGATTTATGCACTTTCAGGAATGGGAAGGAAAGAGAATTTGTATATGGCGGATATTGTATATACAATTCATTTCATCTTTTAAATGAAATCCATTCTTCCATATAGCTTATTTTCAATGGAACATTGTCAAGCTTTTGCTTGCAATTGTAAGATT ATGGACAGAGCCCACAGGTTGGGCCAGCGGAAGGTTGTAAACGTCCATCGACTCATAATGCGTGGAACATTAGAAGAAAAAGTTATGAACCTTCAAAAGTTTAAAGTTTCAATTGCTAATGCTGTCATCAATTCCGAGAATGCCAGTATGAAAACGATGAATACTGATCAATTGCTTGATCTTTTCACATCTGCCGAAAGCTCCAAAAAGGGAGCGGCGTCAGCGTCATCTAAGCAGTCAGATGGCAACTTTGATGGAGAGGTAAAAGCAATGGGTGGAAAGAAGGGTCTGAAAGCCATCCTTGGAGGACTGGAGGAACTTTGGGACCAATCTCAATACACTGAAGAGTACAATCTTAATCAGTTCTTAGAAAAGCTTAATGGCTGA MDRAHRLGQRKVVNVHRLIMRGTLEEKVMNLQKFKVSIANAVINSENASMKTMNTDQLLDLFTSAESSKKGAASASSKQSDGNFDGEVKAMGGKKGLKAILGGLEELWDQSQYTEEYNLNQFLEKLNG
BLAST of Lsi05G003450.1 vs. Swiss-Prot
Match: BTAF1_ARATH (TATA-binding protein-associated factor BTAF1 OS=Arabidopsis thaliana GN=BTAF1 PE=1 SV=1) HSP 1 Score: 179.5 bits (454), Expect = 2.3e-44 Identity = 96/128 (75.00%), Postives = 107/128 (83.59%), Query Frame = 1
BLAST of Lsi05G003450.1 vs. Swiss-Prot
Match: BTAF1_HUMAN (TATA-binding protein-associated factor 172 OS=Homo sapiens GN=BTAF1 PE=1 SV=2) HSP 1 Score: 121.7 bits (304), Expect = 5.8e-27 Identity = 66/126 (52.38%), Postives = 85/126 (67.46%), Query Frame = 1
BLAST of Lsi05G003450.1 vs. Swiss-Prot
Match: MOT1_YEAST (TATA-binding protein-associated factor MOT1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MOT1 PE=1 SV=1) HSP 1 Score: 112.8 bits (281), Expect = 2.7e-24 Identity = 63/131 (48.09%), Postives = 89/131 (67.94%), Query Frame = 1
BLAST of Lsi05G003450.1 vs. Swiss-Prot
Match: MOT1_SCHPO (Probable helicase mot1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mot1 PE=1 SV=4) HSP 1 Score: 107.8 bits (268), Expect = 8.7e-23 Identity = 61/130 (46.92%), Postives = 87/130 (66.92%), Query Frame = 1
BLAST of Lsi05G003450.1 vs. TrEMBL
Match: A0A0A0LAU8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G307170 PE=4 SV=1) HSP 1 Score: 234.6 bits (597), Expect = 6.8e-59 Identity = 123/128 (96.09%), Postives = 127/128 (99.22%), Query Frame = 1
BLAST of Lsi05G003450.1 vs. TrEMBL
Match: F6I5H6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0024g00350 PE=4 SV=1) HSP 1 Score: 202.6 bits (514), Expect = 2.9e-49 Identity = 107/128 (83.59%), Postives = 117/128 (91.41%), Query Frame = 1
BLAST of Lsi05G003450.1 vs. TrEMBL
Match: W9RF19_9ROSA (TATA-binding protein-associated factor 172 OS=Morus notabilis GN=L484_005161 PE=4 SV=1) HSP 1 Score: 199.9 bits (507), Expect = 1.9e-48 Identity = 105/128 (82.03%), Postives = 118/128 (92.19%), Query Frame = 1
BLAST of Lsi05G003450.1 vs. TrEMBL
Match: B9I6D4_POPTR (SNF2 domain-containing family protein OS=Populus trichocarpa GN=POPTR_0013s06470g PE=4 SV=2) HSP 1 Score: 199.9 bits (507), Expect = 1.9e-48 Identity = 105/128 (82.03%), Postives = 117/128 (91.41%), Query Frame = 1
BLAST of Lsi05G003450.1 vs. TrEMBL
Match: B9SD95_RICCO (TATA-binding protein-associated factor MOT1, putative OS=Ricinus communis GN=RCOM_1515310 PE=4 SV=1) HSP 1 Score: 199.1 bits (505), Expect = 3.2e-48 Identity = 106/128 (82.81%), Postives = 116/128 (90.62%), Query Frame = 1
BLAST of Lsi05G003450.1 vs. TAIR10
Match: AT3G54280.2 (AT3G54280.2 DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases) HSP 1 Score: 179.5 bits (454), Expect = 1.3e-45 Identity = 96/128 (75.00%), Postives = 107/128 (83.59%), Query Frame = 1
BLAST of Lsi05G003450.1 vs. NCBI nr
Match: gi|659114355|ref|XP_008457028.1| (PREDICTED: TATA-binding protein-associated factor BTAF1 [Cucumis melo]) HSP 1 Score: 237.7 bits (605), Expect = 1.2e-59 Identity = 125/128 (97.66%), Postives = 127/128 (99.22%), Query Frame = 1
BLAST of Lsi05G003450.1 vs. NCBI nr
Match: gi|778680790|ref|XP_011651396.1| (PREDICTED: TATA-binding protein-associated factor BTAF1 [Cucumis sativus]) HSP 1 Score: 234.6 bits (597), Expect = 9.8e-59 Identity = 123/128 (96.09%), Postives = 127/128 (99.22%), Query Frame = 1
BLAST of Lsi05G003450.1 vs. NCBI nr
Match: gi|700202664|gb|KGN57797.1| (hypothetical protein Csa_3G307170 [Cucumis sativus]) HSP 1 Score: 234.6 bits (597), Expect = 9.8e-59 Identity = 123/128 (96.09%), Postives = 127/128 (99.22%), Query Frame = 1
BLAST of Lsi05G003450.1 vs. NCBI nr
Match: gi|719964968|ref|XP_010255046.1| (PREDICTED: TATA-binding protein-associated factor BTAF1 isoform X1 [Nelumbo nucifera]) HSP 1 Score: 204.1 bits (518), Expect = 1.4e-49 Identity = 107/128 (83.59%), Postives = 117/128 (91.41%), Query Frame = 1
BLAST of Lsi05G003450.1 vs. NCBI nr
Match: gi|719964979|ref|XP_010255080.1| (PREDICTED: TATA-binding protein-associated factor BTAF1 isoform X2 [Nelumbo nucifera]) HSP 1 Score: 204.1 bits (518), Expect = 1.4e-49 Identity = 107/128 (83.59%), Postives = 117/128 (91.41%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
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