Lsi05G003380 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G003380
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	nijmegen breakage syndrome 1
Location	chr05 : 4281595 .. 4293096 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCCTCTTTGTTTTTCTGCTCTCCTTTTTAGGCTCTTCCCTTGCTTCCATGGAATTGTTGCTCATCAATTGTTAAACATTAGAAAAACAGTATTTGTAAAATATGGTTTGGGGCTTCTTCCCCGTCGATCCTCTTTCAGGTCCGTTCGTTCTTCGTGATTTCCTAATTACTTCTGCTGCTGAAAAAGTGGTTTTCTTTATATTGTAATGAAATAAGTTTTTGAAGAATCGTCAGTTTTTGTTTGGTTGGATTATTTATATTTATATAATCAAGTGCATGTTGCAGGCGAGGAGAAATTCTACATTTTTGCACCTGGAAAGTATAAAGTGGGTCGTAAAGGTACTTCGATTGTGCTACTACTTGCATTTTACCCACTACTTTTTCTTCTAAATGCTACATCCGTCTTTGTTGTTTCATATGAGTATTATTTGAGAAACATATATATGATTAGACTATAATCTTAATCACTCAGCTATAAGTGTATTCAATGTTCTCAGCCAATTTGACAAGGAGCCTAGTGATGTTTCGCCCTTATTAAATTTCTTGTTTTATCTTTGGGACTTCAAAGTTATCTTCAGTAATTATTCGATGGACACTATTTTGCTTGAGTAGACTCCTCTTTTCTTTATTGGGTTGGTTTTTTTTATGCCCTGTATTTTTTTTCAATGAAAGTGGTTTTTTTTGTTTTTTATTTAAAAAAAAGGTGTACTCAATGTCCTGGTGAGATCCTATCAAACCTACTTTGTGCCTCACTAACCCTAATGAGTGGTGAGTGTCCTAATGACCTTGTTGAGGGAATGATCTCAAGTAATCCGTGTCCTTTGAAGGTGTGTTCAAGAATGTAAGAGTTTCAAGCTCCACATGCTCAAGTCCAAGGGTATACATAGAGTTTTGAGAATGATACTACACCACCAAACGAGCTAAACTAGATCCTAGAATATGAATGACGTTATTCTGTGTATAACTAGATTCTAGGGAATATTCCTATATGATAGAACCCAAATATATTGAGAGATAAATGATAATGAAATTACAAGATAAACCAAGTATTCGAGGTACTTGGACTCTCCCTCTTTTGAGATTTTTCTCAAACCCTAAATCACTTACTGAAATAATGCCTACCTTTTCCCTTTCCCACCCCCTATATTTATAATAAGCTACCTTAACATATTCTCTAACTAATTGCCAATATACCATTAACACTCTAATTATTTCCTAATAGCATTCCTATCACTATCCTAACGACTATCAAATTTTGCAATATTTGAAAAGAATAAGGAGAAGAGGCCTATGACTTTGAAAGTCTAAATGGATGCAGACTATGAAAGTCTATTGATGATAGAAGATCTACATCAAGCTATTTACTATTCTAGGAGGAATTTTATTACTATTTGGAGATGTAAGCAAATGTTGTGACTTGATCAATTCTAGAAGTTGCATTCAGAGCAACAACACTAAGAATATTTGAATTTCTTAGGATAAAAATGATCTTATAGGGGGCTCCAGATTTTTTTATAGAAACAACTGCTTTCATTGAGAAAAAAATAAAAGAATACAAAAGGGAATACAAAAAAATCAAGCCCACAAAATCCCCCCTAAAGAAAGGGTTTCCAACTAAGTAAAATATTGCCTAGTCATCGAACGAACATCCCTTTGACGAGCAAACGCAAGATCAAACTTTTGAAAGAAGCCATTCCAAATAGATCTTGCATACTGACACTCCCAGAGAAGGTGATTCAGGTTTTCCTCTGCCTTTTGACAGAGAATGCAGCACAAAGGATCCATTAACGAAGGCATCTTTCTCAAAAGCCTATTCGTCATGTTCACACGCTCAAGAAAAACTTGCCTAGAAAGGAACTTGACTTTCTTAGGAAACTTAATCCTCCATAAAATGCCAAAGATCGACTCAATAGCGGGAGAGAGATCCAATAAAATCCTAAAGAAAGACTTGTAAGAGAAGCCCTCCGTGGGGGAAGAACTCCACTCACAAACATCCTTTCTACCAAGCCTAAAGTCGTAACCCTCAATCAAGGAAAGAAGGGAGGCCACCTTTGTCGTTTCCCTATTCGACAAAGGCTGACGGAAACCAAAGGAGAAAGAAGCCAAATTCCCCGACCAAACCAAAAAATCTGATACCCAACAATTTTTCAAGGAGGACAAAGAATATAATCAAGGAAACACGGAAGAGAGGGGTCTATCCTCTTGCCCAAAGATCTTCCCAAAAATATGTTTCCTTACCATCTCCCACGACACGGAAAACAAAGATGGGAAAAGGAAGGGAGATGAAAAGAAATATCTCTCTACCGATCTCAGTGAGGGGGCTCCAGATAATCTACTTAGGAAACATAAAAACACGCACACATGTATACTCAAAATCTTATTGTTGCTTTGATACATTAGTTCACCATTATTGTTGCTTTGATAAGTTAGAGATAGGTTGAGGCTATCACTTCAGGTGAAGAACAGAAGGATAATGTTTCGACTTTTGAGGGAGGCATTTACAATTTGACATTATGCTTTTAAAGAAAAGTAGGACTGCTAAGACGTGTTGCACCATGCCTCGTCAGTGCTTAAGCAGGAGGGCATACATAAAGTTGTGCCTCTGCGAGGCAAGGCTCCTCACGCACATGCTTTTTTGAGCTTTTTAAACAATTGACTCAATCAATTTTATAACATTTTCCATAATGTTTTGTAGTTGACAAATTTTAAACATGGAATTCTTCTAATGACCTTTTTTTTTTCTCTCAAATCATGCTCTCAGTTGTTTGCTCGTTATGTGATCTTATTTGTTCCACAGGCTGTGATTTGACTATAACAAAAGATAAAGGAGTTTCCCGCATCCATGCAGAAATATTTGTAGATGCTATGATCTCTTTAAATTCCCACAATAGTTACTTATCTGGCGTTTCCTCTAAAGTAAGGATTAGCGATTGCTCCAAATATGGGACATTTGTTAGAAGGAATTCTGGGTTGAAGGAGAAAATTCATGAGTTTCCGAGAAAAGAAGCAAGCTTGTATGATGGAGACGTGGTTTCATTTGGATCTGGCAATGCAACCTACAGGTAATGTAAGAAACATTTAGAATAGTGATAAGATTTATCGTTCATGTTGCTCTCACTGCCTAGCTCTTTTCTTCTTCTTCTTCTTATTATTATTATTTTGAACAAGAAACAACTTCTCGTTGATATAATGAAAAAGAGTAAAAGTTCAAAGGGATACGAACTCCCAAGGGGAGTGAAAAAAAATTTAAATATCAAATATAACCAAATAGAGATTAGTTATGAAAATAAATAAACATTTAAAGAACCAAGAACTTTTCCAAAATGCTTGTCTGAAGGACTTAGAGAGGTTGCAAATGAATGATGAAACTATGAATAAGGCCTCCATCAAACACTTACAACCGATAGCTAATTCAAAAGAACCAAGAACCAACTAGCAACCAACAAAAAGAAGACCTTTTAATATCTATTATAAAGCAACCCATGAAACATAAACAAAAAGCTTCTCACAAAAATAGATTGATTCTACCAAACTCCCAAACTTCAAGCCATTCCTTCACACAGCTTTACAAGAACTATTAACCCATTGAAAGAAGTTAAGAAGCTTTGGAAGAACCATCACGAGCAAAGAAATGAAAGGTCTGCTCATGCAAGTCAATCCAATTATCTCAGAGAAGACAAAATAAAACTTTGCAAAGCTAAATCTTGACACAGCTTTCTTCATAGAAGGTGGAAGATCTCCTTTCCCTTTTTGCTTTTGTGAATATATATATACTTCTCGGTTTTCTTTTTTTTTTTTTTTTAAAATGTCTCTTGAGAGGAAAATTACTATTTTATGGTCTAAGAAACTTTTCCCTCAACCAAATTTGCTAACACCCATTGTGCTTGAAGTCCTTATTAGCCTATAAACAAATCTTGCAGGTTCTCCTTTGTACAACTCTTGTTTTACGTTAACTGTTCAGAGTCCGTCCAATTGCAATTGCTTAGGGACAAGGTTTCATCCATCGGTAAGAAGTTGCTGATCGTCTTTTACTTATTACAAAAGGAATCCTTTATCTGGTTAATTAGAAGTTTCAATTTCCTAAGGTTTCTTATGTAACTGCTCAGTTGCTTTATATTAGCATGCTGTAGAACAAACGCTTGAAAACTCTCAATACAACCTTAAAGACTTGGTATTGAATATGTTATACTTATAGAATATGAGGAAAAAAGAGGGAATCCTTAACCTTATTTGTGCATAGCATTTTTAACTTAATAGCATGTTAAATTACATTGAAGAACAACTAACTAAAAGGATGTTTGTTTAAATTATCCATGAACTGTAAAAAGGATAAAATAAAATAAACTAAATAATTTCTAAGTAGTGCAAAAGAACAACCAATAACCAACTAAATTTATATGTCCTTAGAATTATATATAGATATATAAAATCAACCATCTAGATGTTTTAAAACATTTAACAATTTGCGGCTGATGCATATTTCCATGATCATCTAGCTCAGAACAAGTGGAAGATCCTGATATTAACCTTTCCATCTATTACACAATGAATGTTTACTGGGCACTTTTATGAATGAGTTCTGCATTTTTGCTGTGGAAGCTGTTCTGACAGATGTCTCTGTTAGGGAATTTTTTTACTGTGATGGAAGCTGTCGATCAAGTTCATTATCATTATGACATTATTTATTGCATGGTTTATCTTGAACAGCATCTACTCATTCTACAAGTTAAATCTTCATTCAAGAAAGTGAAGGAGTTTGTAGTTTTGGTTGAATTTGAAGAGTGTATGTATTAAAATGTAGGTGCTTGTACTTCTCATGATATTCAGGAGTGTACGCATGTACTTGTAGAGGAACTGATGCCTTTTAATGAAGCTCTAGTTGATGCCATCGTGGCTGAGAAACCTTTTGTTCTTACTAGTTGGGTCGAGGTAACAACGTGCTTCATTTATTAATTGTTTCTTCTACTGTGATGTCGACTTGTATCTTTATTTTCACAACCATATTATGGTAGGAGCTTGATCTTGAGAATAAAAAATTACACTGAATTGTATTAAGATATAAAAGTTTTTTTTTTCCTTAAATGAAAGACCGAACTTTCATTAAGAAAAATTAAAAAAGAAAAAATACACGTGCATACCCAAAAAGAGCCCACAAAAGGGCTTAAGTCAAGTAAAATAAGACTAAGGTGTAATTACAAAAAGACCTTGTCACTTATGCCCAAAGAGAGACAATAAATAAGATGATATAAAAGAAGAGTTACAATATCAACCCCAAACACTTCTATATAGGCCTGGACTCTCCTAAGAAAACTACACTCCAGAATTCTGAATGACTCCCTCTCATTCTAACTACCCTACCCTAACAACTACCACATAAATACGGATAATGGAACACTGAGAAAACCAGGAACTAATAGATTTTTTCTTAGAGATCCTCGGAGGAGCATCCTCATGACACTTTTTTTTTTCTTCTTCATATGAGAAGCATCCAACCTTCATTTCATTGATGTTATGAAACAAAAAGGTTATAAAGGGCTAAGATAGCCATGAGAATTACAAAAAGCAAGGCCAATGAGCTATAAGGGACGTAAAGGCTATAATCACAGAAGTATGGAGAGAATTTACACCAAGACAGGGAAGTATAAATAGATGTTCAAAAAAAGATGAGGATTTGAGATGCAGCGGTTACGCTCTTATCCAAATAAACCAAAGTTAGGTTCTAATGATGAAGGACCAAAGAACATCCTCATATCCTGTTAGTTTCTTTTGCTCCAGCTCTCTTCACAAATATCAGTTCAACCATCCATATAATTACTTGATGAAAATCTGAACGTTCTTTTTGCTTTTATGTTTATGTTGGCTGTCATCGTAAACCAATAATGACTTTGGTTACAACTTTGTTAAATAAAGAAGATACTTCTCCATTTATTTTTATCTGTGCACTGACCATTGCCAAGCATTATTAGTATCTGCACCGCTGTAGATCCTCATTATTTGTCCTAACTTTGTTGAAGATGATATTTCTGATACTTTCTATTTCTAGATTCATGCTATCAACAAAAACATGAGAGAAGCAAGTTTTTGCATTCTTACTGATTGTTACACTTTAGTTATTTGCAGGAAGAACCTCCTGTAACGAGATTCCATCCATTGATTCGTGAGTGCTGCCTTTTAAGTTCAGCTGGGAACAAATCATTATTAAGTAATAGTAAATATTTTTTGAACTCGTTCTTTGAATCAGCTATCATCCAACAATGATTGTGGAAGGGATGCATGTCAAAGTTGTGGACCCCAACACTCGTAAAAACTGTTTGAGTGGATACACCCTTTTACTAGGGTCGGCACATATGGTAATGAATATGTTTTCATTTCAATTTATGTCTTTTCATTCTCACATTTTTTGGGAGTTGCTGGACAATCCTTTGACGAACGAATTATAAAATAAATTAGCTTTATTTTATAATTTGTTCATCTTTCATGTTAAGTTTCTCAGTGGTTTTGAGTGTTATGAATTGGCTCGCTTGAAGGCATCTACTTGGTGCTCTCTTCCCAAATTATTTGGGGGATTTTCTATTCAAGATATTTGCCTCAATTGGAATGTCTTTATCTCTCATGATTAATTTTTTATTATGTTTTTATGTTTTTGCTTATTTCACTCTGTTTCAAAGTTTGTATCTTTGGAGCACTACTTTCTTTTCATTATATAAGTGAAAAGCTTTATCCTTGTTTTAAATTTAAAAAAAAAAAAAAAAAATCATTATGGTATTTCTATCATGTGTATTCAGTCCCAACAAGTAGAAGTTTGGAAGAAAGAAAGAAATAAAAGAAAGGAAAAGGAAAATTTTAAACTCATGACATTACTACCTATGAAAGTTTGGTTTCTTAAAAAAAAAAAAAGTGAGGGTACCAGTTGGGGATGTCATGTAAATAGTAATAAGTTATTAGTAAGGGTATAGTGGTGATTAGTTAGGGAGGTGGTTATAGAGTTTGGCTATAAATAGAGGCAGTGACGAAGGAGGAGGGGGATTACTTTGTGGTGAGTGAATTAGAGTTGGGAGAGATCTCAAGAGGGAGGGTGCAAGTACCTTGAATTACTCGTTTATCTTGTAGTTTCTTCTTAATATTGCAATATCGTGATACACTACCAATTCCACCACCTATCCGTTGTATTGATTCAAGCAGGAAGATAGACAACATCAATCTTGAAGGACGTTGAACAGGGGTAGGGTAGAGTCTCCAACAACCCACGAATTGTGGAATAGTGGTTGGTGGCAGATTTGTATCTCCAACTTGTGGAAGCATCCCATTCACACACAATGTCTCTTCTGTAAGTAAACTTGGAGAAAGTAATAGCAAACTTGGGGATTGATCCCCTTGGCCAATTTGTGTGTTGTGTGTTTGTGCTTCTTCTAGCAGAACAATCTTGGGATCCTTTGGGCAACGAGAAGACTGACTAAGAGGAACTTCTTAGGCTGCACAGACAAGGTGTAATACTTTACTTGAGTTTTTACAATGTGACAGTTAAAAACTAAGAATGGAGACACCAGAGAGACATAGACGAGCAAGAGAGAGAAGAAGTAACTTCGTTTATTTTGGATTGATGCAATGGTTGAATGATAGAGCCAACATATATAAAGATTACAAGAGAAATTAAATCTTATTCTTAACCACCTAACTTCCCTAAAATATAGGAGATCCTCTTAAGTATTTATTTGCTAAAAATAAACCATATATTCCAAACAACTTCAAATTAAATCAAACTAATTCAATAGTAGTTATGCCAGAAAATTGTTTTCTGTCATGTTGAGTCTGGACAGTTATTAGAAGTTATATGTTTGTGTGTGGTATCTGGATTAGTAGCTATGTATGTGAAAACTATCTTTTGCTTTGTCTTATGTGGGGAGAGTTCAAACCTCTCAAATGATTGGGTTGTATGGAATATTTGTGAATAATCTTTGAAGTTCCTATCCATGTATCATATTGTTATCTTTAGTGTTTACATATATTTTCTGCGTTTAGATACCTAACACTCTTTTGGTGGATTGTTTAGACTTTCATTATTTTGGTAATCAATTCCCCATATTTTAGCAGTACAAGTATGAGGATCAGCTGAAGATGTTATTGCAACAAGTTGGCGGTGCAAATGTGTTGTCTATTGAGGACTTCTCTTCAGATAGCCAAGTACGAGGCTCTATCTCTTTTCACATATACTGTATCCATTCTTTCCTAATTGCTTCTGAAGGCTGGGTGAACACTGTTGTTTGACTAATTTCATGTAAAAATATTCTAGTTCACATTAATTCTGACAGCAATGTGGTCTCATGGTTGACAATATGTACCGTATTATATACTTATGGGTATGAACTTTAGGATCGAGTCTTGTGAAAATACATGCTTAATACACTTCATTTATTTGTTGACAGTCACATAGCACATGACAGATAGTTCAATGTTTCAATAAAGTGAAACTTGCATGGCTTGGGGCCATAATTATTGATGACATAAATCATCTACATATACGTAATATCTTTACTCATGAAATCATAATTGCATTCCAAACGGTAAGGCTTAAGATGTGAACAGTGTTGAAAATATGCCTCAAATGGTGCTTTATGTAGTCTTTGATTATAAGAAATATAATGGCTTGAAGTCTTTATTCCATTTCTTTTGTTTATCTCAGTTCTGTGAACCTGGTGTTTGTTGGGCAATTGATTTGTATGATAACTATTGTAGGATTTGGGTAATGGAGAAAATGATCGGGTAGTATTCGTTATGCCTGGAGGATCAGCAGAAAAGTTGGATTCATCTTCTAAGGTTGATTCTTATTATAAAATAACCGAGTTGGTTTTGATATCTTCTGTTTTGAGTGGAAGGCTGGACAGAGACAATTTGATACATCCCTGTGGTAAGCAATCTTCCTCACCACTAGTTTCGTTTGTAGTATATTTACTCATTCTGATAATTGATAAATTACTATTGATTTTTCTTCATTTTAACTTCCTTCATTTAACTGAATGTAAAGTTTCCTTGCAGAACCTGGTTCCTCTACATGCTCCACTGATGAGACCGTGATAGCAGAATCCGATCTTGAAGTGGAAACAAGTAAACCAGTTGTTTCTAATGTCCAAGGGCCAGATGAATACGTAAGCAAATCAGAGGAATATTTAAGCAGACCAGAGGTGTCCATTGACAAGGCTGCTACTGGATCAGCAGGTGGCCATGAAACATTAAAAAATAGTTATAGTAGTGTCGAAATGAGAAAAGACAAGATATCCGACAAAAGAAATATAGACATTATATTCAGTCAAAATTTAATTGTGCAGCATGCGATGAAACCCTCCTCAATAGTCACTGCAGAATACAGTGGAATTACAAACTTCAAACGCTTCAGAAAAGTATTACTATTTGCCTTTGAATGTCTTATTCTGCATGATTTCGTTTTAAATGGTGTGCAAATTACTGCTCCATATTGATGAGATCTTAGCCATATCCTTTTATTATGCTGTAAGATCATTTCCGATGCACGTTAATCAACCATTGTATGTTTTTGCTATCTTAAATGAACTAAATGGTGATTGTGATCATGTTGCCATTCAACTGTCAGTATGTGGGTTTAAGTAGCAGTAAAAAAGGATGTTATTGCCTCATATATGCTTAGCAGTGAAAAGTTTGTGTTGGTTGGCACATGGAGACAAATGTTATGGAAGTTGATACACATCACTCATGAACTTTCAACATTTTTGCAGACAGAAACTCACTCTGGGAATAGCTTTTATGATCTAGTCCCATTTGATAAGTATCCTTACAAGTAAGTGTTTCTCTTATGATCAGTGAAATTTGTTTCTTATCAAAAAAAAAAAAAAAAAAAAGCGAGAGAAACACTCACTTTTTTTTTTTTTTAAAAAAAAAAAAAAGCGAGAGAAACACTCACTTTTTTTTTTTTTTAAAAAAAAAAAAAAAAAAAAAGTAAGTGTTTCTCTCGCTTTTTTTTTCTTTCAAGAAACGGGATCCAACTCATTGCATTATACCCGCAGCTCACTGATCTTTAGAAGCTTTGCCTACTCAAGGACAACTCCATAGGGCAATAATGGTTTTAACTTTTAAGTTACTAAAATTCGAACTTGGTGTTTAAACTCTTAAGGGGCCGTTTGGGGCACCAACTAGAAGTTGGTGGAGTGGGTGGGGCACCAAATATAATAGTGGTGTATATAACTATTTATAACCTACAATTAAGTATAGTAAATACTATTTTGAAACCCTTTTTGCTACAGTATTTGCTATTTTTCACTTATCCTCTCTTTTCTTCTTTGCTATAGTGTTTACTGTTTCTTACCCAAACAAAAATAGTTTACACCCCAAACACAAATTATTATAATCCAGACTAAAATAGTCTATACTCCAAATACTAACTATAATAACCAACTTAGCGCTCCAAACGCCCCCTAAGAGACTTAAGATGGATAGAAATAGTGAGATTGTATCTTGGAGTCATTTGGGATGTGTTTGGTGCATAGTAGAGACATTCGTTCCATGTTGGGGAGGTGTTTCTGCATCTGGAACAAGGGCGCAGTCTTTCAGCAAGCTTATAACTTCATCATCGTGATGGGTGTTTGGCTGGGGAGAAATTGGGGAGAAATTGTAGAACTTTTAGAGGAGTTGAGAAGAAATCCTATGGTCCCTTCGGGGACATCCGATAAAATTGGAATGATACAAAGAAGAAATCCTATGAAGTGGTTTAAGATCATTAGATTTATTGCTTTTTGTGGCTTTTTTTTTTGCTAGGTTTGATTTTTTTTTTTTTTATCGAAGTCCTTTTATTTGATGGTATCTTGATCTTCAAACATTTCAAGTCTGCGCCTATCTTACATTATTTCATGACTTTCTAGGGATAATGGTGATGGAAGGGAGGAAATTGCAGAGTCCTTGAAAGAAGAAAGAAGGCGCAAGGAAACAGAAGCTATAGCTGAAGATTTATTTCATAATGAGAAGGTGAGTCTTCTTAACTTATTTAGCATCACAAGTTAATAAATAGGCATACTTCACTACTTTAGGCTTAGGACATACAATTTTAACTTGATCAAATTTTAGGGACGGCGACGTGGAATGGCCGGTTCCCTTCGAGAGCTGTTTACTCGTTCTTAAAAGCAGGTATTTAGGTTTGTATCAAAGGATCCTCTCCCTCACATTATGTAACTTCAACGTCCTTGTGTCCTTGAGTTGTGATCGTGTGGTGCTTGAAATAGTTTAGTCTTTTTTCTTGGTCGGTATTTATGGATTCGAACACGGAAAGAGACACCATTTGCAGGGAAATGCTATGGCCATATTTGGGATGTTGAGATACTGATTCTTCTTCTCCAAACTTACAACCCTCCCAACCCCATCACATTGCTATTAATTTTGTAATTATTATTATTATCTTTTTAATTTGGGCTTGATGTATGCCAAATGCAGACTTTATAAACCAAGAAGTCTATATACATTTGCCTTTTGATTTTCACAGTT

mRNA sequence

TTCCTCTTTGTTTTTCTGCTCTCCTTTTTAGGCTCTTCCCTTGCTTCCATGGAATTGTTGCTCATCAATTGTTAAACATTAGAAAAACAGTATTTGTAAAATATGGTTTGGGGCTTCTTCCCCGTCGATCCTCTTTCAGGCGAGGAGAAATTCTACATTTTTGCACCTGGAAAGTATAAAGTGGGTCGTAAAGGCTGTGATTTGACTATAACAAAAGATAAAGGAGTTTCCCGCATCCATGCAGAAATATTTGTAGATGCTATGATCTCTTTAAATTCCCACAATAGTTACTTATCTGGCGTTTCCTCTAAAGTAAGGATTAGCGATTGCTCCAAATATGGGACATTTGTTAGAAGGAATTCTGGGTTGAAGGAGAAAATTCATGAGTTTCCGAGAAAAGAAGCAAGCTTGTATGATGGAGACGTGGTTTCATTTGGATCTGGCAATGCAACCTACAGGTTCTCCTTTGTACAACTCTTGTTTTACGTTAACTGTTCAGAGTCCGTCCAATTGCAATTGCTTAGGGACAAGGTTTCATCCATCGGTGCTTGTACTTCTCATGATATTCAGGAGTGTACGCATGTACTTGTAGAGGAACTGATGCCTTTTAATGAAGCTCTAGTTGATGCCATCGTGGCTGAGAAACCTTTTGTTCTTACTAGTTGGGTCGAGTACAAGTATGAGGATCAGCTGAAGATGTTATTGCAACAAGTTGGCGGTGCAAATGTGTTGTCTATTGAGGACTTCTCTTCAGATAGCCAAGATTTGGGTAATGGAGAAAATGATCGGGTAGTATTCGTTATGCCTGGAGGATCAGCAGAAAAGTTGGATTCATCTTCTAAGGTTGATTCTTATTATAAAATAACCGAGTTGGTTTTGATATCTTCTGTTTTGAGTGGAAGGCTGGACAGAGACAATTTGATACATCCCTGTGAACCTGGTTCCTCTACATGCTCCACTGATGAGACCGTGATAGCAGAATCCGATCTTGAAGTGGAAACAAGTAAACCAGTTGTTTCTAATGTCCAAGGGCCAGATGAATACGTAAGCAAATCAGAGGAATATTTAAGCAGACCAGAGGTGTCCATTGACAAGGCTGCTACTGGATCAGCAGAAACTCACTCTGGGAATAGCTTTTATGATCTAGTCCCATTTGATAAGTATCCTTACAATAGAGACATTCGTTCCATGTTGGGGAGGTGTTTCTGCATCTGGAACAAGGGCGCAGTCTTTCAGCAAGCTTATAACTTCATCATCGTGATGGGTGTTTGGCTGGGGAGAAATTGGGGAGAAATTGTAGAACTTTTAGAGGAGTTGAGAAGAAATCCTATGGTCCCTTCGGGGACATCCGATAAAATTGGAATGATACAAAGAAGAAATCCTATGAAGTGGGATAATGGTGATGGAAGGGAGGAAATTGCAGAGTCCTTGAAAGAAGAAAGAAGGCGCAAGGAAACAGAAGCTATAGCTGAAGATTTATTTCATAATGAGAAGGGACGGCGACGTGGAATGGCCGGTTCCCTTCGAGAGCTGTTTACTCGTTCTTAAAAGCAGGTATTTAGGTTTGTATCAAAGGATCCTCTCCCTCACATTATGTAACTTCAACGTCCTTGTGTCCTTGAGTTGTGATCGTGTGGTGCTTGAAATAGTTTAGTCTTTTTTCTTGGTCGGTATTTATGGATTCGAACACGGAAAGAGACACCATTTGCAGGGAAATGCTATGGCCATATTTGGGATGTTGAGATACTGATTCTTCTTCTCCAAACTTACAACCCTCCCAACCCCATCACATTGCTATTAATTTTGTAATTATTATTATTATCTTTTTAATTTGGGCTTGATGTATGCCAAATGCAGACTTTATAAACCAAGAAGTCTATATACATTTGCCTTTTGATTTTCACAGTT

Coding sequence (CDS)

ATGGTTTGGGGCTTCTTCCCCGTCGATCCTCTTTCAGGCGAGGAGAAATTCTACATTTTTGCACCTGGAAAGTATAAAGTGGGTCGTAAAGGCTGTGATTTGACTATAACAAAAGATAAAGGAGTTTCCCGCATCCATGCAGAAATATTTGTAGATGCTATGATCTCTTTAAATTCCCACAATAGTTACTTATCTGGCGTTTCCTCTAAAGTAAGGATTAGCGATTGCTCCAAATATGGGACATTTGTTAGAAGGAATTCTGGGTTGAAGGAGAAAATTCATGAGTTTCCGAGAAAAGAAGCAAGCTTGTATGATGGAGACGTGGTTTCATTTGGATCTGGCAATGCAACCTACAGGTTCTCCTTTGTACAACTCTTGTTTTACGTTAACTGTTCAGAGTCCGTCCAATTGCAATTGCTTAGGGACAAGGTTTCATCCATCGGTGCTTGTACTTCTCATGATATTCAGGAGTGTACGCATGTACTTGTAGAGGAACTGATGCCTTTTAATGAAGCTCTAGTTGATGCCATCGTGGCTGAGAAACCTTTTGTTCTTACTAGTTGGGTCGAGTACAAGTATGAGGATCAGCTGAAGATGTTATTGCAACAAGTTGGCGGTGCAAATGTGTTGTCTATTGAGGACTTCTCTTCAGATAGCCAAGATTTGGGTAATGGAGAAAATGATCGGGTAGTATTCGTTATGCCTGGAGGATCAGCAGAAAAGTTGGATTCATCTTCTAAGGTTGATTCTTATTATAAAATAACCGAGTTGGTTTTGATATCTTCTGTTTTGAGTGGAAGGCTGGACAGAGACAATTTGATACATCCCTGTGAACCTGGTTCCTCTACATGCTCCACTGATGAGACCGTGATAGCAGAATCCGATCTTGAAGTGGAAACAAGTAAACCAGTTGTTTCTAATGTCCAAGGGCCAGATGAATACGTAAGCAAATCAGAGGAATATTTAAGCAGACCAGAGGTGTCCATTGACAAGGCTGCTACTGGATCAGCAGAAACTCACTCTGGGAATAGCTTTTATGATCTAGTCCCATTTGATAAGTATCCTTACAATAGAGACATTCGTTCCATGTTGGGGAGGTGTTTCTGCATCTGGAACAAGGGCGCAGTCTTTCAGCAAGCTTATAACTTCATCATCGTGATGGGTGTTTGGCTGGGGAGAAATTGGGGAGAAATTGTAGAACTTTTAGAGGAGTTGAGAAGAAATCCTATGGTCCCTTCGGGGACATCCGATAAAATTGGAATGATACAAAGAAGAAATCCTATGAAGTGGGATAATGGTGATGGAAGGGAGGAAATTGCAGAGTCCTTGAAAGAAGAAAGAAGGCGCAAGGAAACAGAAGCTATAGCTGAAGATTTATTTCATAATGAGAAGGGACGGCGACGTGGAATGGCCGGTTCCCTTCGAGAGCTGTTTACTCGTTCTTAA

Protein sequence

MVWGFFPVDPLSGEEKFYIFAPGKYKVGRKGCDLTITKDKGVSRIHAEIFVDAMISLNSHNSYLSGVSSKVRISDCSKYGTFVRRNSGLKEKIHEFPRKEASLYDGDVVSFGSGNATYRFSFVQLLFYVNCSESVQLQLLRDKVSSIGACTSHDIQECTHVLVEELMPFNEALVDAIVAEKPFVLTSWVEYKYEDQLKMLLQQVGGANVLSIEDFSSDSQDLGNGENDRVVFVMPGGSAEKLDSSSKVDSYYKITELVLISSVLSGRLDRDNLIHPCEPGSSTCSTDETVIAESDLEVETSKPVVSNVQGPDEYVSKSEEYLSRPEVSIDKAATGSAETHSGNSFYDLVPFDKYPYNRDIRSMLGRCFCIWNKGAVFQQAYNFIIVMGVWLGRNWGEIVELLEELRRNPMVPSGTSDKIGMIQRRNPMKWDNGDGREEIAESLKEERRRKETEAIAEDLFHNEKGRRRGMAGSLRELFTRS

Homology

[Close]

BLAST of Lsi05G003380 vs. Swiss-Prot
Match: NBS1_ARATH (Nijmegen breakage syndrome 1 protein OS=Arabidopsis thaliana GN=NBS1 PE=1 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 8.0e-53
Identity = 109/194 (56.19%), Postives = 143/194 (73.71%), Query Frame = 1


Query: 1   MVWGFFPVDPLSGEEKFYIFAPGKYKVGRKGCDLTITKDKGVSRIHAEIFVDA-MISLNS 60
           MVWG FPVDPLSGE+K+YIF+ G YKVGRKGCD+ I KDKGVSRIHAE+  DA  +S + 
Sbjct: 1   MVWGLFPVDPLSGEDKYYIFSKGIYKVGRKGCDIIINKDKGVSRIHAELTFDATTVSTSR 60

Query: 61  HNSYLSGVSS-KVRISDCSKYGTFVRRNSGLKEKIHEFPRKEASLYDGDVVSFGSGNATY 120
            N   S  SS  +R+ DCSKYGTFV+ + G K+K+HE   KE  L DGDV++FG+G+A Y
Sbjct: 61  RNKSSSDTSSFVIRVKDCSKYGTFVKTDLGTKDKVHELSNKEKILQDGDVIAFGTGSAIY 120

Query: 121 RFSFVQLLFYV-NCSESVQL-QLLRDKVSSIGACTSHDI-QECTHVLVEELMPFNEALVD 180
           R S + L+FY+   SE+ ++ Q ++D VSSIGA  S  + +ECTHVL+E  M  NEAL++
Sbjct: 121 RLSLIPLVFYLCPSSETFKVDQPVQDAVSSIGARISPTLSEECTHVLLEPRMQVNEALIN 180

Query: 181 AIVAEKPFVLTSWV 190
           AI+A+K  +LT+WV
Sbjct: 181 AILAKKTIILTNWV 194

[Close]

BLAST of Lsi05G003380 vs. Swiss-Prot
Match: NBS1_ORYSJ (Nijmegen breakage syndrome 1 protein OS=Oryza sativa subsp. japonica GN=NBS1 PE=1 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 4.1e-33
Identity = 81/200 (40.50%), Postives = 122/200 (61.00%), Query Frame = 1


Query: 1   MVWGFFPVDPLSGEEKFYIFAPGKYKVGRKGCDLTITKDKGVSRIHAEIFVDAMISLNSH 60
           MVW   PVD + G ++ YIFA G YKVGRK CD+ +  D  +SR+HAEI V+ M++ +  
Sbjct: 1   MVWALTPVDTVRGAQRCYIFAAGTYKVGRKDCDVIVQTDTSISRVHAEIVVEKMVAWDPQ 60

Query: 61  NSYLSGVSSKVRISDCSKYGTFVRRNSGLK-EKIHEFPRKEASLYDGDVVSFGSGNATYR 120
           +   +   S VR+ D SKYGTF  +  G +  ++H+   ++A L DGD V+FG+GNAT+R
Sbjct: 61  SGAPAN-PSYVRVVDRSKYGTFFNKVQGTQGSRLHK--DEDAMLADGDTVTFGTGNATFR 120

Query: 121 FSFVQLLFYVNCSESVQLQ-LLRDKVSSIGA-CTSHDIQECTHVLVEELMPFNEALVDAI 180
            SFV ++ + +  +S ++   L+  ++SIGA  T     ECTHVLV+E       L+DA+
Sbjct: 121 LSFVPIVVFFHGKKSGRISPCLQAVMTSIGAYATRKWSDECTHVLVDESCSLTPELLDAV 180

Query: 181 VAEKPFVLTSWVEYKYEDQL 198
           +A+K  VL  W +   E  +
Sbjct: 181 LAKKQIVLGDWFKVMAEKNI 197

[Close]

BLAST of Lsi05G003380 vs. Swiss-Prot
Match: NBS1_ORYSI (Nijmegen breakage syndrome 1 protein OS=Oryza sativa subsp. indica GN=NBS1 PE=2 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 2.0e-32
Identity = 80/200 (40.00%), Postives = 122/200 (61.00%), Query Frame = 1


Query: 1   MVWGFFPVDPLSGEEKFYIFAPGKYKVGRKGCDLTITKDKGVSRIHAEIFVDAMISLNSH 60
           MVW   PVD + G ++ YIFA G YKVGRK CD+ +  D  +SR+HAEI V+ M++ +  
Sbjct: 1   MVWALTPVDTVRGAQRCYIFAAGTYKVGRKDCDVIVQTDTSISRVHAEIVVEKMVAWDPQ 60

Query: 61  NSYLSGVSSKVRISDCSKYGTFVRRNSGLK-EKIHEFPRKEASLYDGDVVSFGSGNATYR 120
           +   +   S VR+ D SKYGTF  +  G +  ++H+   ++A L DGD V+FG+G+AT+R
Sbjct: 61  SGAPAN-PSYVRVVDRSKYGTFFNKVQGTQGSRLHK--DEDAMLADGDTVTFGTGSATFR 120

Query: 121 FSFVQLLFYVNCSESVQLQ-LLRDKVSSIGA-CTSHDIQECTHVLVEELMPFNEALVDAI 180
            SFV ++ + +  +S ++   L+  ++SIGA  T     ECTHVLV+E       L+DA+
Sbjct: 121 LSFVPIVVFFHGKKSGRISPSLQAVMTSIGAYATRKWSDECTHVLVDESCSLTPELLDAV 180

Query: 181 VAEKPFVLTSWVEYKYEDQL 198
           +A+K  VL  W +   E  +
Sbjct: 181 LAKKQIVLGDWFKVMAEKNI 197

[Close]

BLAST of Lsi05G003380 vs. Swiss-Prot
Match: NBN_DANRE (Nibrin OS=Danio rerio GN=nbn PE=2 SV=2)

HSP 1 Score: 58.2 bits (139), Expect = 3.0e-07
Identity = 43/163 (26.38%), Postives = 72/163 (44.17%), Query Frame = 1


Query: 2   VWGFFPVDPLSGEEKFYIFAPGKYKVGRKGCDLTITKDKGVSRIHAEIFVDAMISLNSHN 61
           +W   P +  SG E   + A  +Y VGRK C++ +T D+ +SR+HA + V          
Sbjct: 1   MWKLQPTE--SGGESVILLAGQEYVVGRKNCEILLTNDQSISRVHAVLTV---------- 60

Query: 62  SYLSGVSSKVRISDCSKYGTFVRRNSGLKEKIHEFPRKEASLYDGDVVSFGSGNATYRFS 121
                    V + D SKYGTFV       EK+     K  +L  G  ++FG   + +   
Sbjct: 61  -----TEQAVTLKDSSKYGTFVN-----GEKLESGSTK--TLQTGYKITFGVFQSKFSLE 120

Query: 122 FVQLLFYVNCSESVQLQLLRDKVSSIGA-CTSHDIQECTHVLV 164
              ++   +C ++     L   + S+G    S    +CTH+++
Sbjct: 121 KECIVVCSSCVDNEGKVTLSQDIRSVGGRLVSSWTSDCTHLVM 139

[Close]

BLAST of Lsi05G003380 vs. TrEMBL
Match: A0A0A0LA01_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G308200 PE=4 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 4.3e-90
Identity = 201/302 (66.56%), Postives = 221/302 (73.18%), Query Frame = 1


Query: 183 FVLTSWVEYKYEDQLKMLLQQVGGANVLSIEDFSSDSQDLGNGENDRVVFVMPGGSAEKL 242
           F+L +   YKY D+LKMLLQQVGGANVLSIEDFSSDSQDLGNGENDRVVFVMPGGS EKL
Sbjct: 220 FLLGNAQSYKYGDRLKMLLQQVGGANVLSIEDFSSDSQDLGNGENDRVVFVMPGGSVEKL 279

Query: 243 DSSSKVDSYYKITELVLISSVLSGRLDRDNLIHPCEPGSSTCSTDETVIAESDLEVETSK 302
           DSS KVDSYYKITEL+LISSVLSG LDRDNLIHPCEPGSSTCSTDETV+AESDLE ETSK
Sbjct: 280 DSSFKVDSYYKITELILISSVLSGTLDRDNLIHPCEPGSSTCSTDETVVAESDLETETSK 339

Query: 303 PVVSNVQGPDEYVSKSEEYLSRPEVSIDKAATGSAETHS--GNSFYDLVPFDKYPYNRDI 362
           P VSNVQGPD YVSKS+EYLSRP +S+D AATGS   H    NS  D+          D 
Sbjct: 340 PAVSNVQGPDAYVSKSDEYLSRPLISVDNAATGSVGGHETVKNSCSDIEMRKDKINESDS 399

Query: 363 RSMLGRCFCIWNKGAVFQQAYN-FIIVMGVWLGRNWGEIVELLEELRRNPMVPSGTSDKI 422
           R++      I+++  + Q A     +V     G N+           R     SG S   
Sbjct: 400 RNI----DIIFSQNLIVQHATKPSTLVTAENNGINFKRF--------RKTQTHSGNSFNN 459

Query: 423 GMIQRRNPMKWDNGDGREEIAESLKEERRRKETEAIAEDLFHNEKGRRRGMAGSLRELFT 482
            +   + P K DNGDGREEIAESLKEERRRKETEAIAEDLFHNEKGRRRGMAGSL+ELFT
Sbjct: 460 LVPFDKYPYK-DNGDGREEIAESLKEERRRKETEAIAEDLFHNEKGRRRGMAGSLQELFT 508

[Close]

BLAST of Lsi05G003380 vs. TrEMBL
Match: A0A151TX91_CAJCA (Nibrin OS=Cajanus cajan GN=KK1_010839 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 7.0e-72
Identity = 166/360 (46.11%), Postives = 217/360 (60.28%), Query Frame = 1


Query: 1   MVWGFFPVDPLSGEEKFYIFAPGKYKVGRKGCDLTITKDKGVSRIHAEIFVDAMISLNSH 60
           MVWG FPVDPLSGEEK+YIF  G YKVGRKGCD+ ITKDKGVSR+HAEI V+ M   N  
Sbjct: 1   MVWGLFPVDPLSGEEKYYIFKKGVYKVGRKGCDVIITKDKGVSRVHAEIVVNTMNPANRL 60

Query: 61  NSYLSGVSSKVRISDCSKYGTFVRRNSGLKEKIHEFPRKEASLYDGDVVSFGSGNATYRF 120
            +  S +SS + I DCSKYGTF+ +N G K+K+HE P KE  L DGD+VSFG+G ATY+F
Sbjct: 61  PNERSHLSSSIHIRDCSKYGTFISKNVGSKKKVHELPNKETVLEDGDLVSFGTGTATYKF 120

Query: 121 SFVQLLFYVNCSESVQLQLLRDKVSSIGACTSHDI-QECTHVLVEELMPFNEALVDAIVA 180
             V L+F++ CS +   Q L +K+SSIGA   H + +ECTHVLV++LMP  + LV A+VA
Sbjct: 121 CHVPLIFFI-CSSNKVDQSLEEKISSIGASIIHTLGEECTHVLVDQLMPLKKDLVGAVVA 180

Query: 181 EKPFVLTSWVE--------------YKY-------------------EDQLK---MLLQ- 240
           +K  VL +W+E              + Y                   ED LK    LL+ 
Sbjct: 181 KKSCVLKTWLEIFAEKNISTEIPSCHSYIPSVSAGGESIKIADPRMREDCLKGYTFLLES 240

Query: 241 --------------QVGGANVLSIEDFSSDSQDLGNGENDRVVFVMP-GGSAEKLDSSSK 300
                         +V GA V+S E F S+SQ     E++RVV V+P GGS+ K D  +K
Sbjct: 241 EHLYRFGNQLKSLLEVAGAKVVSFEVFCSNSQGSDYAEDNRVVCVIPGGGSSYKSDLFNK 300

Query: 301 VDSYYKITELVLISSVLSGRLDRDNLIHPCEPGSSTCSTDETVIAESDLEVETSKPVVSN 308
             S  ++ E+ +I +  SG+LD   L  PC   SS+CSTDET++ +S+ EVET+    SN
Sbjct: 301 QSSLLRVDEMDVICAAFSGQLDLSILKSPCILVSSSCSTDETIVPDSETEVETATSAHSN 359

[Close]

BLAST of Lsi05G003380 vs. TrEMBL
Match: M5W7W1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004302mg PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 3.1e-64
Identity = 153/296 (51.69%), Postives = 185/296 (62.50%), Query Frame = 1


Query: 1   MVWGFFPVDPLSGEEKFYIFAPGKYKVGRKGCDLTITKDKGVSRIHAEIFVDAMIS--LN 60
           MVWGFFP DPLSGE+KFYIFA G YKVGRKGCD+ ITKDKGVSR+HAEI VDAMIS  L 
Sbjct: 1   MVWGFFPDDPLSGEDKFYIFARGTYKVGRKGCDVNITKDKGVSRVHAEIVVDAMISAPLQ 60

Query: 61  SHNSYLSGVSSKVRISDCSKYGTFVRRNSGLKEKIHEFPRKEASLYDGDVVSFGSGNATY 120
           + +S LS   SKVRI DCSKYGTF+ +N    EKIHE P KE SL +GD+VSFG+GNA Y
Sbjct: 61  TKSSILS---SKVRIRDCSKYGTFINKNLTSMEKIHELPNKETSLREGDLVSFGTGNAIY 120

Query: 121 RFSFVQLLFYVNCSESVQL-QLLRDKVSSIGA-CTSHDIQECTHVLVEELMPFNEALVDA 180
           RFSFV L+F+  CS+  Q+   L DK+SS GA  T H  QECTHVLV++LMP  E ++DA
Sbjct: 121 RFSFVPLIFFACCSDPTQVNHALEDKLSSFGAHITYHLSQECTHVLVDQLMPVKEDMLDA 180

Query: 181 IVAEKPFVLTSWVEYKYEDQLKMLLQQVGG-ANVLSIEDFSSDSQDLGNGENDRVVFVMP 240
           IVA+KPFVL SWVE+  E  ++  L      A  L+ E  S    D    EN        
Sbjct: 181 IVAKKPFVLGSWVEFLAEKNIRTELPSCESFAPTLTFEGVSVKLADPRTREN------CL 240

Query: 241 GGSAEKLDSSSKVDSYYKITELVLISSVLSGRLDRDNLIHPCEPGSSTCSTDETVI 292
            G    LDS        ++  L+ +S      +D  NL       SS C  ++ V+
Sbjct: 241 EGYTFLLDSKPVYKFMNRLRSLLEVSGAKILTIDGFNL----NSQSSDCRENDRVV 283

[Close]

BLAST of Lsi05G003380 vs. TrEMBL
Match: B9IDC7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s12710g PE=4 SV=2)

HSP 1 Score: 247.3 bits (630), Expect = 3.8e-62
Identity = 126/199 (63.32%), Postives = 152/199 (76.38%), Query Frame = 1


Query: 1   MVWGFFPVDPLSGEEKFYIFAPGKYKVGRKGCDLTITKDKGVSRIHAEIFVDAMISLNSH 60
           MVWG FPVDPLSGE+K+YIF  G YKVGRKGCD+ I KDKGVSRIHAE+ VD MIS++  
Sbjct: 1   MVWGLFPVDPLSGEDKYYIFTKGVYKVGRKGCDVIICKDKGVSRIHAELVVDEMISMDHP 60

Query: 61  NSYLSGVSSKVRISDCSKYGTFVRRNSGLKEKIHEFPRKEASLYDGDVVSFGSGNATYRF 120
               S + S+V I DCSKYGT++      KEK+H+F  KE SL DGDVVSFG+G A YRF
Sbjct: 61  LHMKSDLPSRVLIRDCSKYGTYIN-----KEKVHKFLNKETSLKDGDVVSFGTGTAVYRF 120

Query: 121 SFVQLLFYVNCSESVQL-QLLRDKVSSIGACTSHDI-QECTHVLVEELMPFNEALVDAIV 180
            FV L+F+V CSES Q+ QLLRDKVSSIGAC ++++ +ECTHVL +ELMP  E LVDAIV
Sbjct: 121 CFVPLVFFVYCSESFQVDQLLRDKVSSIGACITYNLSEECTHVLADELMPVKEHLVDAIV 180

Query: 181 AEKPFVLTSWVEYKYEDQL 198
           ++KP VL SWVE   E ++
Sbjct: 181 SKKPIVLRSWVELVAEKRI 194

[Close]

BLAST of Lsi05G003380 vs. TrEMBL
Match: B9SIQ5_RICCO (Nibrin, putative OS=Ricinus communis GN=RCOM_0538810 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 1.9e-61
Identity = 122/192 (63.54%), Postives = 148/192 (77.08%), Query Frame = 1


Query: 1   MVWGFFPVDPLSGEEKFYIFAPGKYKVGRKGCDLTITKDKGVSRIHAEIFVDAMISLNSH 60
           MVW  FP DPLSGE+K+YIF  G YKVGRKGCD+ I KDKGVSRIHAEI VD MISLN  
Sbjct: 1   MVWALFPADPLSGEDKYYIFKKGTYKVGRKGCDVIINKDKGVSRIHAEIIVDEMISLNPM 60

Query: 61  NSYLSGVSSKVRISDCSKYGTFVRRNSGLKEKIHEFPRKEASLYDGDVVSFGSGNATYRF 120
            S  S  +S+VRI DCSKYGTF+ +N   KEK+HEFP KE +L DGD+VSFG+GNATY F
Sbjct: 61  KSN-SDRTSRVRIRDCSKYGTFINKNLDSKEKVHEFPNKETTLKDGDMVSFGTGNATYSF 120

Query: 121 SFVQLLFYVNCSESVQL-QLLRDKVSSIGACTSHDI-QECTHVLVEELMPFNEALVDAIV 180
           SFV L+F+V CS S Q+   L+DKVSSIGAC +  + +ECTHV+++  MP  + +++AIV
Sbjct: 121 SFVPLIFFVCCSGSFQVNDPLQDKVSSIGACITFQLSEECTHVIMDHQMPLKKDVIEAIV 180

Query: 181 AEKPFVLTSWVE 191
           A+KP VL SWVE
Sbjct: 181 AKKPMVLQSWVE 191

[Close]

BLAST of Lsi05G003380 vs. TAIR10
Match: AT3G02680.1 (AT3G02680.1 nijmegen breakage syndrome 1)

HSP 1 Score: 209.5 bits (532), Expect = 4.5e-54
Identity = 109/194 (56.19%), Postives = 143/194 (73.71%), Query Frame = 1


Query: 1   MVWGFFPVDPLSGEEKFYIFAPGKYKVGRKGCDLTITKDKGVSRIHAEIFVDA-MISLNS 60
           MVWG FPVDPLSGE+K+YIF+ G YKVGRKGCD+ I KDKGVSRIHAE+  DA  +S + 
Sbjct: 1   MVWGLFPVDPLSGEDKYYIFSKGIYKVGRKGCDIIINKDKGVSRIHAELTFDATTVSTSR 60

Query: 61  HNSYLSGVSS-KVRISDCSKYGTFVRRNSGLKEKIHEFPRKEASLYDGDVVSFGSGNATY 120
            N   S  SS  +R+ DCSKYGTFV+ + G K+K+HE   KE  L DGDV++FG+G+A Y
Sbjct: 61  RNKSSSDTSSFVIRVKDCSKYGTFVKTDLGTKDKVHELSNKEKILQDGDVIAFGTGSAIY 120

Query: 121 RFSFVQLLFYV-NCSESVQL-QLLRDKVSSIGACTSHDI-QECTHVLVEELMPFNEALVD 180
           R S + L+FY+   SE+ ++ Q ++D VSSIGA  S  + +ECTHVL+E  M  NEAL++
Sbjct: 121 RLSLIPLVFYLCPSSETFKVDQPVQDAVSSIGARISPTLSEECTHVLLEPRMQVNEALIN 180

Query: 181 AIVAEKPFVLTSWV 190
           AI+A+K  +LT+WV
Sbjct: 181 AILAKKTIILTNWV 194

[Close]

BLAST of Lsi05G003380 vs. NCBI nr
Match: gi|449456249|ref|XP_004145862.1| (PREDICTED: nijmegen breakage syndrome 1 protein isoform X2 [Cucumis sativus])

HSP 1 Score: 364.0 bits (933), Expect = 4.0e-97
Identity = 179/190 (94.21%), Postives = 182/190 (95.79%), Query Frame = 1


Query: 1   MVWGFFPVDPLSGEEKFYIFAPGKYKVGRKGCDLTITKDKGVSRIHAEIFVDAMISLNSH 60
           MVWGFFPVDPLSGEEKFYIFAPGKYKVGRKGCDLTI KDKGVSRIHAEI VDAMISLNSH
Sbjct: 1   MVWGFFPVDPLSGEEKFYIFAPGKYKVGRKGCDLTIAKDKGVSRIHAEILVDAMISLNSH 60

Query: 61  NSYLSGVSSKVRISDCSKYGTFVRRNSGLKEKIHEFPRKEASLYDGDVVSFGSGNATYRF 120
           NS+LS +SSKVRISDCSKYGTFVRRNSGLKEK+HE PRKEASLYDGDVVSFGSGNATYRF
Sbjct: 61  NSHLSNISSKVRISDCSKYGTFVRRNSGLKEKLHELPRKEASLYDGDVVSFGSGNATYRF 120

Query: 121 SFVQLLFYVNCSESVQLQLLRDKVSSIGACTSHDIQECTHVLVEELMPFNEALVDAIVAE 180
           S VQLLFYVN SES Q QLLRDKVSSIGACTSHDIQECTHVLVEELMPFNEALVDAIVAE
Sbjct: 121 SLVQLLFYVNRSESFQSQLLRDKVSSIGACTSHDIQECTHVLVEELMPFNEALVDAIVAE 180

Query: 181 KPFVLTSWVE 191
           KPFVLTSWVE
Sbjct: 181 KPFVLTSWVE 190

[Close]

BLAST of Lsi05G003380 vs. NCBI nr
Match: gi|778680802|ref|XP_011651398.1| (PREDICTED: nijmegen breakage syndrome 1 protein isoform X1 [Cucumis sativus])

HSP 1 Score: 364.0 bits (933), Expect = 4.0e-97
Identity = 179/190 (94.21%), Postives = 182/190 (95.79%), Query Frame = 1


Query: 1   MVWGFFPVDPLSGEEKFYIFAPGKYKVGRKGCDLTITKDKGVSRIHAEIFVDAMISLNSH 60
           MVWGFFPVDPLSGEEKFYIFAPGKYKVGRKGCDLTI KDKGVSRIHAEI VDAMISLNSH
Sbjct: 1   MVWGFFPVDPLSGEEKFYIFAPGKYKVGRKGCDLTIAKDKGVSRIHAEILVDAMISLNSH 60

Query: 61  NSYLSGVSSKVRISDCSKYGTFVRRNSGLKEKIHEFPRKEASLYDGDVVSFGSGNATYRF 120
           NS+LS +SSKVRISDCSKYGTFVRRNSGLKEK+HE PRKEASLYDGDVVSFGSGNATYRF
Sbjct: 61  NSHLSNISSKVRISDCSKYGTFVRRNSGLKEKLHELPRKEASLYDGDVVSFGSGNATYRF 120

Query: 121 SFVQLLFYVNCSESVQLQLLRDKVSSIGACTSHDIQECTHVLVEELMPFNEALVDAIVAE 180
           S VQLLFYVN SES Q QLLRDKVSSIGACTSHDIQECTHVLVEELMPFNEALVDAIVAE
Sbjct: 121 SLVQLLFYVNRSESFQSQLLRDKVSSIGACTSHDIQECTHVLVEELMPFNEALVDAIVAE 180

Query: 181 KPFVLTSWVE 191
           KPFVLTSWVE
Sbjct: 181 KPFVLTSWVE 190

[Close]

BLAST of Lsi05G003380 vs. NCBI nr
Match: gi|659114408|ref|XP_008457038.1| (PREDICTED: uncharacterized protein LOC103496815 isoform X2 [Cucumis melo])

HSP 1 Score: 354.8 bits (909), Expect = 2.4e-94
Identity = 175/190 (92.11%), Postives = 179/190 (94.21%), Query Frame = 1


Query: 1   MVWGFFPVDPLSGEEKFYIFAPGKYKVGRKGCDLTITKDKGVSRIHAEIFVDAMISLNSH 60
           MVWGFFPVDPLSGEEKFYIFAPGKYKVGRKGCDLTI KDKGVSRIHAEI VDAMI LNSH
Sbjct: 1   MVWGFFPVDPLSGEEKFYIFAPGKYKVGRKGCDLTIAKDKGVSRIHAEILVDAMIPLNSH 60

Query: 61  NSYLSGVSSKVRISDCSKYGTFVRRNSGLKEKIHEFPRKEASLYDGDVVSFGSGNATYRF 120
           NS+LS + SKVRISDCSKYGTFVRRNSGLKEK+HE  +KEASL DGDVVSFGSGNATYRF
Sbjct: 61  NSHLSNICSKVRISDCSKYGTFVRRNSGLKEKLHELSKKEASLCDGDVVSFGSGNATYRF 120

Query: 121 SFVQLLFYVNCSESVQLQLLRDKVSSIGACTSHDIQECTHVLVEELMPFNEALVDAIVAE 180
           SFVQLLFYVN SES Q QLLRDKVSSIGACTSHDIQECTHVLVEELMPFNEALVDAIVAE
Sbjct: 121 SFVQLLFYVNRSESFQSQLLRDKVSSIGACTSHDIQECTHVLVEELMPFNEALVDAIVAE 180

Query: 181 KPFVLTSWVE 191
           KPFVLTSWVE
Sbjct: 181 KPFVLTSWVE 190

[Close]

BLAST of Lsi05G003380 vs. NCBI nr
Match: gi|659114406|ref|XP_008457036.1| (PREDICTED: nibrin isoform X1 [Cucumis melo])

HSP 1 Score: 354.8 bits (909), Expect = 2.4e-94
Identity = 175/190 (92.11%), Postives = 179/190 (94.21%), Query Frame = 1


Query: 1   MVWGFFPVDPLSGEEKFYIFAPGKYKVGRKGCDLTITKDKGVSRIHAEIFVDAMISLNSH 60
           MVWGFFPVDPLSGEEKFYIFAPGKYKVGRKGCDLTI KDKGVSRIHAEI VDAMI LNSH
Sbjct: 1   MVWGFFPVDPLSGEEKFYIFAPGKYKVGRKGCDLTIAKDKGVSRIHAEILVDAMIPLNSH 60

Query: 61  NSYLSGVSSKVRISDCSKYGTFVRRNSGLKEKIHEFPRKEASLYDGDVVSFGSGNATYRF 120
           NS+LS + SKVRISDCSKYGTFVRRNSGLKEK+HE  +KEASL DGDVVSFGSGNATYRF
Sbjct: 61  NSHLSNICSKVRISDCSKYGTFVRRNSGLKEKLHELSKKEASLCDGDVVSFGSGNATYRF 120

Query: 121 SFVQLLFYVNCSESVQLQLLRDKVSSIGACTSHDIQECTHVLVEELMPFNEALVDAIVAE 180
           SFVQLLFYVN SES Q QLLRDKVSSIGACTSHDIQECTHVLVEELMPFNEALVDAIVAE
Sbjct: 121 SFVQLLFYVNRSESFQSQLLRDKVSSIGACTSHDIQECTHVLVEELMPFNEALVDAIVAE 180

Query: 181 KPFVLTSWVE 191
           KPFVLTSWVE
Sbjct: 181 KPFVLTSWVE 190

[Close]

BLAST of Lsi05G003380 vs. NCBI nr
Match: gi|700202671|gb|KGN57804.1| (hypothetical protein Csa_3G308200 [Cucumis sativus])

HSP 1 Score: 340.1 bits (871), Expect = 6.2e-90
Identity = 201/302 (66.56%), Postives = 221/302 (73.18%), Query Frame = 1


Query: 183 FVLTSWVEYKYEDQLKMLLQQVGGANVLSIEDFSSDSQDLGNGENDRVVFVMPGGSAEKL 242
           F+L +   YKY D+LKMLLQQVGGANVLSIEDFSSDSQDLGNGENDRVVFVMPGGS EKL
Sbjct: 220 FLLGNAQSYKYGDRLKMLLQQVGGANVLSIEDFSSDSQDLGNGENDRVVFVMPGGSVEKL 279

Query: 243 DSSSKVDSYYKITELVLISSVLSGRLDRDNLIHPCEPGSSTCSTDETVIAESDLEVETSK 302
           DSS KVDSYYKITEL+LISSVLSG LDRDNLIHPCEPGSSTCSTDETV+AESDLE ETSK
Sbjct: 280 DSSFKVDSYYKITELILISSVLSGTLDRDNLIHPCEPGSSTCSTDETVVAESDLETETSK 339

Query: 303 PVVSNVQGPDEYVSKSEEYLSRPEVSIDKAATGSAETHS--GNSFYDLVPFDKYPYNRDI 362
           P VSNVQGPD YVSKS+EYLSRP +S+D AATGS   H    NS  D+          D 
Sbjct: 340 PAVSNVQGPDAYVSKSDEYLSRPLISVDNAATGSVGGHETVKNSCSDIEMRKDKINESDS 399

Query: 363 RSMLGRCFCIWNKGAVFQQAYN-FIIVMGVWLGRNWGEIVELLEELRRNPMVPSGTSDKI 422
           R++      I+++  + Q A     +V     G N+           R     SG S   
Sbjct: 400 RNI----DIIFSQNLIVQHATKPSTLVTAENNGINFKRF--------RKTQTHSGNSFNN 459

Query: 423 GMIQRRNPMKWDNGDGREEIAESLKEERRRKETEAIAEDLFHNEKGRRRGMAGSLRELFT 482
            +   + P K DNGDGREEIAESLKEERRRKETEAIAEDLFHNEKGRRRGMAGSL+ELFT
Sbjct: 460 LVPFDKYPYK-DNGDGREEIAESLKEERRRKETEAIAEDLFHNEKGRRRGMAGSLQELFT 508

The following BLAST results are available for this feature:

BLAST of Lsi05G003380 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NBS1_ARATH	8.0e-53	56.19	Nijmegen breakage syndrome 1 protein OS=Arabidopsis thaliana GN=NBS1 PE=1 SV=1	[more]
NBS1_ORYSJ	4.1e-33	40.50	Nijmegen breakage syndrome 1 protein OS=Oryza sativa subsp. japonica GN=NBS1 PE=...	[more]
NBS1_ORYSI	2.0e-32	40.00	Nijmegen breakage syndrome 1 protein OS=Oryza sativa subsp. indica GN=NBS1 PE=2 ...	[more]
NBN_DANRE	3.0e-07	26.38	Nibrin OS=Danio rerio GN=nbn PE=2 SV=2	[more]

BLAST of Lsi05G003380 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LA01_CUCSA	4.3e-90	66.56	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G308200 PE=4 SV=1	[more]
A0A151TX91_CAJCA	7.0e-72	46.11	Nibrin OS=Cajanus cajan GN=KK1_010839 PE=4 SV=1	[more]
M5W7W1_PRUPE	3.1e-64	51.69	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004302mg PE=4 SV=1	[more]
B9IDC7_POPTR	3.8e-62	63.32	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s12710g PE=4 SV=2	[more]
B9SIQ5_RICCO	1.9e-61	63.54	Nibrin, putative OS=Ricinus communis GN=RCOM_0538810 PE=4 SV=1	[more]

BLAST of Lsi05G003380 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G02680.1	4.5e-54	56.19	nijmegen breakage syndrome 1	[more]

BLAST of Lsi05G003380 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449456249\|ref\|XP_004145862.1\|	4.0e-97	94.21	PREDICTED: nijmegen breakage syndrome 1 protein isoform X2 [Cucumis sativus]	[more]
gi\|778680802\|ref\|XP_011651398.1\|	4.0e-97	94.21	PREDICTED: nijmegen breakage syndrome 1 protein isoform X1 [Cucumis sativus]	[more]
gi\|659114408\|ref\|XP_008457038.1\|	2.4e-94	92.11	PREDICTED: uncharacterized protein LOC103496815 isoform X2 [Cucumis melo]	[more]
gi\|659114406\|ref\|XP_008457036.1\|	2.4e-94	92.11	PREDICTED: nibrin isoform X1 [Cucumis melo]	[more]
gi\|700202671\|gb\|KGN57804.1\|	6.2e-90	66.56	hypothetical protein Csa_3G308200 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR008984	SMAD_FHA_dom_sf
IPR000253	FHA_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0065007	biological regulation
biological_process	GO:0019219	regulation of nucleobase-containing compound metabolic process
biological_process	GO:0050794	regulation of cellular process
biological_process	GO:0050896	response to stimulus
biological_process	GO:0044767	single-organism developmental process
biological_process	GO:0048856	anatomical structure development
biological_process	GO:0007275	multicellular organism development
biological_process	GO:0060255	regulation of macromolecule metabolic process
biological_process	GO:0071479	cellular response to ionizing radiation
biological_process	GO:0008152	metabolic process
biological_process	GO:0032508	DNA duplex unwinding
biological_process	GO:0000724	double-strand break repair via homologous recombination
biological_process	GO:0007095	mitotic G2 DNA damage checkpoint
biological_process	GO:0006312	mitotic recombination
biological_process	GO:0007131	reciprocal meiotic recombination
biological_process	GO:0042770	signal transduction in response to DNA damage
biological_process	GO:0016233	telomere capping
biological_process	GO:0022402	cell cycle process
biological_process	GO:0032501	multicellular organismal process
biological_process	GO:0007126	meiotic nuclear division
biological_process	GO:0007127	meiosis I
biological_process	GO:0006974	cellular response to DNA damage stimulus
biological_process	GO:0051276	chromosome organization
biological_process	GO:0006310	DNA recombination
biological_process	GO:0009653	anatomical structure morphogenesis
biological_process	GO:0006464	cellular protein modification process
biological_process	GO:0003006	developmental process involved in reproduction
biological_process	GO:0007059	chromosome segregation
biological_process	GO:0009791	post-embryonic development
biological_process	GO:0070647	protein modification by small protein conjugation or removal
biological_process	GO:0033043	regulation of organelle organization
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0044710	single-organism metabolic process
biological_process	GO:0044702	single organism reproductive process
biological_process	GO:0009987	cellular process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0030870	Mre11 complex
cellular_component	GO:0000784	nuclear chromosome, telomeric region
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding
molecular_function	GO:0004003	ATP-dependent DNA helicase activity
molecular_function	GO:0003684	damaged DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G003380.1	Lsi05G003380.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000253	Forkhead-associated (FHA) domain	GENE3D	G3DSA:2.60.200.20		coord: 2..122 score: 1.2
IPR000253	Forkhead-associated (FHA) domain	PFAM	PF00498	FHA	coord: 25..112 score: 1.4
IPR000253	Forkhead-associated (FHA) domain	PROFILE	PS50006	FHA_DOMAIN	coord: 25..83 score:
IPR008984	SMAD/FHA domain	unknown	SSF49879	SMAD/FHA domain	coord: 13..123 score: 2.87
None	No IPR available	PANTHER	PTHR12162	NIBRIN-RELATED	coord: 3..191 score: 2.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G003380	Csa3G308200	Cucumber (Chinese Long) v2	culsiB212
Lsi05G003380	CSPI03G21350	Wild cucumber (PI 183967)	cpilsiB210
Lsi05G003380	Cucsa.375320	Cucumber (Gy14) v1	cgylsiB607
Lsi05G003380	CmaCh01G003680	Cucurbita maxima (Rimu)	cmalsiB440
Lsi05G003380	CmoCh01G003860	Cucurbita moschata (Rifu)	cmolsiB430
Lsi05G003380	Cla013203	Watermelon (97103) v1	lsiwmB361
Lsi05G003380	MELO3C020249	Melon (DHL92) v3.5.1	lsimeB368
Lsi05G003380	ClCG05G011330	Watermelon (Charleston Gray)	lsiwcgB332
Lsi05G003380	MELO3C020249.2	Melon (DHL92) v3.6.1	lsimedB384
Lsi05G003380	Cla97C05G093440	Watermelon (97103) v2	lsiwmbB329
Lsi05G003380	Bhi01G001507	Wax gourd	lsiwgoB447
Lsi05G003380	Cp4.1LG02g16910	Cucurbita pepo (Zucchini)	cpelsiB470
Lsi05G003380	CsGy3G020700	Cucumber (Gy14) v2	cgyblsiB199
Lsi05G003380	Carg07456	Silver-seed gourd	carlsiB700
Lsi05G003380	CsaV3_3G021130	Cucumber (Chinese Long) v3	cuclsiB231

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G003380	Cucumber (Gy14) v2	cgyblsiB192
Lsi05G003380	Silver-seed gourd	carlsiB464
Lsi05G003380	Cucurbita maxima (Rimu)	cmalsiB249
Lsi05G003380	Cucurbita moschata (Rifu)	cmolsiB237
Lsi05G003380	Cucurbita pepo (Zucchini)	cpelsiB511