Lsi05G002900 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G002900
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Methionyl-tRNA formyltransferase, putative
Location	chr05 : 3722102 .. 3728714 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCTTTTGAATATTATTAAAAAAGAAAAAGAAATTCTTTTGAATTTCCTTCTCCATGGTTAGTTCATCAGTGGATAAACAGTAAAAAGGCCAAGACGAAGCCGAAGGAGCCCCAGTTCCACCATTGAAGGAACAACATCAATGGCTTCCTCGCTCATGTTTCGTCGCTTTTGCTGTTTGCAGTCTCCAGCTTCTCCTTCTTCAGTTTTCTCCAAGAAGAAGCCCCTTGTTTTCTTGGGTTCTCCTCAGGTTCTCCATTTTTCTTTACAGTTCTTGCTATTATTCTCATTCCTTTGCGTAATAGAACAAATGCCTTTTGCTTAGGTCTCAACCGCAGTTCTTGATGCTCTTCTTAATGTATCTTCCGCCTCAGATGCAGCTTTTGAGGTATTCATTAACACAATTTCAGCTCTTGGCTCATCAGTTCAGTCTTGTGTATGTTTGATGAGAGTTGGTTTTGTCCGAATGCTTTAGGAATTTCTTCTGCTGAAATTTGGGCATTTTGGAATTCTCCCCAATTTTTTTTTTTACTATGGTCGTGTTAAGTATAATTGTTAATGTGATTTTAGAGAAGAAAAATGTGGGGCGGAGGAAGTTGTTTAGGAAATTATTGTAACTTGTTTCATTTAGGAATATGTCAAAAATCACAATAACCTTTTTTATATTTGAATCATTTCTAACTATAAACCCTTTAATCATTATGTTGGAATGCCTTGAATTTGATATCTAGTGCTTCGAACGACCAAGTACGGCCCCTGAAAGCTAAGTTTCGTATTTATGTTATTTGCACTATTTACGATCTTGGTCCTAGGGTTTAAAGGAGTGTACTGTATAAACTCTCTAACCCTACTGGCATCTTAGATTCTGTAATTTGAAAATTTCTCTCTAATAAAATTACTCTCCCTCTACCTGTGGATGTAGCTAACACACTGTTCATGAACCACGTAAATCTGTGTGTCGATTCTCTATTTCTTTACATTTTTTGTTCATCTTTGATTGTCGATTTCTTAACACATTATTTGAACATGGGACAGACCCAATTAAGAACTATAACCCAATACCTGAATTGGTGGGTGCCCTTTTCAGTCTGTTTATAGAATCAATGCCAGGGAATTTTCGTTAAGCTCCTATAGGCTATACGTGAATATATGCAATTGGTTATGTGAAGGTTATCTGCTGTACAATCTACATCCTCAAATTGCCTTCTGTTCTGACATTAATCACTGTTCAATCTACTGTTGAAAGTTTATCATTGAACTTTTGAAGGCATGGAGGAGGCAGAATTTATGAGTGTTACTGTCCTTTGAAGGAAAATTTTAGCATTTTCAGTGTAAGCCACTCATAGAAAGGATGTCCTTCCACTGTGTTTCTATATAAGGACCCCCTCCTCTTGTACTCATCTAGAAGGTGAATTTTGTGATCTAATACCAAATTTTCAATCTTATCTGACCTTATTAACACTTCTAAAAAAATCATACCTTATTAACAACGGTTTCTTGTTACAAGGAATAAATGTGATATGATCTCAGATTACAGTGATGTGTGTGTTTATGAGATGACTAATGTTAAACTGTTTAGGTTGCAGCTATTGTTACTCAGCCACCTTCTAGAAGGGATAGGGGGAGAAAGATGATGCCTTCTCCAGTTGCACAATATGCCCTTGATAAAGGCTTCTCTTCTGACCTTATTCTTACACCTGAAAAAGCTGGAGAGGTAATGTTACTTTTTCTTTGAGGTGAAGGCCTAAGGATTTGATTCTGCTTGCCATGGTGATAGAAACAACTGAGTTTTAAAAATGTGGAAAGTTCTAAAATATTAGCATGGTGTGAGAGTGTATGAGGTGTACTTGTACAACATTGGGCATCAAGTTTATTTCTTTCTATGAAGAATGACCTTGTATGTTTATTTTGTAACTGCGTGATAATTAATTTGGCACTGGTTATTGCTAGTTTATATTCTTTCAATTTGTGGTAGAGAGATTTACTTACTACTTTTTTATTGAACTTGTCTCAATGATCTCTTTGCACATGTGTAATACTCACAAGTGCAGCGTATTCCTTACTTTTCATAAGACAATTTTGATATATTCTTACTTTTTTGTATGATCATTGGTGTAAATTTTTAAACTTAGTTACAATAATACAATACGTGGGACTTTTGAAACTTCTGTAATACTCTCTTTGATGGAAAATTCTTTAAATCATGTAGAAATTAGAATGCTTTTTTTTTTCTTCTTATTTTCCTGCAGGACGTGTTTTTGAGCACCTTGAAGGCTTTGCAACCTGAACTATGTATTACAGCAGCATATGGGAATATCTTACCGACCAAATTTCTCAATATTCCAGCATTGGGTAAGCCATTTATTTCTTATTGATATCCAAAATAAAAACAGTCATTTGAAGCATATCTAGAACTAGAAGGGAGCAGAAGAATCTTTCATAAGGTGGAAAGAAGACCTGGTCAATTTTTTTGTTCTTCCTCTTGGAGTTGTTTAATTAATTTCTTTTGTAATTATGATCCCTCAGGGACGGTCAATATTCACCCAAGTCTATTGCCATTATATCGTGGTGCTGCCCCTGTTCAGAGGGCGCTGCAGGTTGCTTATGCCTATAAGCTATTGATATTAAGTACATTGAGTTCAATTTTTCCAATACCTTCAAATAGTTGTAAGATTCTTTCCCCTGCTTTTAGGACGGTGTTAAGGAGACTGGCGTATCACTGGCATTCACAGTTCGTGCATTGGATGCTGGACCCGTCATTGCTTATAAAAAATTTGAAGTTGATGAGCATATCAAGGTGCGCTTGTTATTAGTTTACAGGTTAAGAAACATGGCATGCATGTCTTGATCATTGATTCCTGTAAAGCATCAGTGGTTGGAATCTGAAAATCCATCACACAATTCACTTATAAATTATAATCAGAATACAATTGAGATGGAGTCAACATTTTGAAGTGCAAATTGTTTTCCATTTTTTTTCACGATCCAGAGATTTTTATGAATTCAGCTACTTATTTCATGTCTTGTTCTGCACAGTTACGTGTCATCTAACAACTTGCAATTTGGTTATTTTACCTTTAAATTCTTGAAGGTGGAGAGCTCACTTTTCGTTTCTTCACTAACCTCCAATTCAATTTGCTAGCAGGCACCCGACTTACTTGCGTTGCTATTTTTAGAAGGTGGGGCATTCAGTGTCTGTCATGAACTTCCCTTGATCTTGATGCTGTCTCTAAGTCTGTCTTTTCTCTTATTCTTTAGCGTATTGGAACTTCTTAGTTTCATCTCTCATGTGAAGAGTGGTGTTGAATTCAAATTCTTCTTCATTTAATAATATAATTTAAACCACAATACCATAAACTCAACTTTTGAAGTTGTTAACTTAAATATATATGTGAGCTTTTGTTTCGATCTAAAATGAGCTAGGTTTTTATTGAAAATGAGGTACAAGAAAAGGACCATAGATAAGGTGAATAAAGTAGCGCTGAAATTTACAAAAAGGGAGCTCTAAGTGGTCTTAATTTTTGGAAAAAACGTTAAAAGGAAGCGTTGAAACCTCAGAACCCACTAACTAAACCCATCTATCAAGTTTTTAGGAATTACAGTTGATTCTGACTTCCAAAGGTTTATAAATTACGCGGTTTTTTATAATACTTGAAAATAAAATGATTATGAAACTTTACCTTCAATGATGATAGTGCGGATTGTTTTAACTTTTAACCATTGAAGGTGAAGTTGCACAATAATTTCAAATGCATGATATTGTTAAAGTACAACTGAAATACCATCAACTTTGAGAATGAAATAAATTAATGTGAGTTGAGAAAATATTATAAAAAGATAGTTCTATTTTCGAACCTTTAATATTACATAGATAGTTTTAATTGTACTATCTTGACAAGGTTTAAGTAGCACTGTAGAGGACAAGTGTAAAACTGGAAACAGTGAGACAAATGAAGCTTCTAATCTGCTTACTTTCCACTCTCATGTGCAGGCTCTAAACTCTTGATTCGGGAACTTCCTTCTATACTTGATGGATCTGCTGAAAAGAAAGCGCAGCCTCAAGACGAATCTAAAGCTACCAAAGCTCCAAAGGTACCCTTGGTTGAGGTCTACGATGATAAATTTTTATTCAAATTACAAGAGAGTGAATTTTGGTTGATATGCTTTAGACAGGGAAAAAGAAAAGACAAAATAATTACTCATCTGATCATTCAACATTTTAGTAATATAAATTCCCTACTCATTCTCTTATAATTAGTTAAAATTATTTCGTCGTACAATAAAGTGAAGCGATAACTAGAAATCCATGAGCTATGAGTATCGATTTCTTAGTTTTATTTTAAAAAACAATCATTGCATCAACAATCTCATATACCAAGAAAATTGTCTGATAATGCGTTGGAGATAGCCTTCAAACTCCTGGATTCAAGTTTTCAGGTTGAGAACTTCATAATTTAAAATCTCTCTCTCCTAAGGTGGTAACTGAAACCTTTTTTAGGATCAGTGAGCGCATGCAACACACTTTTTGTAATTATTCTTTAGGTCTTATCGTACTTAATTGACGCCTGTTTAGCGGTGCTTCCCTTTGTGGGCTGGTTTTTTTGGATGCTTAGGTATTCTTTCATTTTTTCTCAATAAGAGGGTGGGTTTTATTTATTATTTATTATTATTATCTGTTTACAATAATAATAATTTTAAAAAAGACAATAATAATGGTAGGAGTGTCGCCAACAACACCTTAGCTATTAACAAAAAATATATATCTTCAGTTAAACTATTTAAGTTCTCTGGAATCTGGCTCTTATGATGCAGATAGCTGCCGATGAGGCATGGCTGTCATTTGATGAAGAGGCATATGTCCTACACAACAAGGTAATTCTGCCCTTCTTTTTGTTCAACTTTGCAGTTAAAACATGCATCCCCTCTAGGTTCGTGCATTTGCAGGATGGCCTGGAACACGAGCTAAGGTTGTTGTTGCTGATGAGAAAAGTGGTCATGACGATATCCTAGAATTCAAAGTCATTACTACAAGAGTTTGCATCAATTGTAGTAGTCAGGAGACTCAAGCAGACGAGATCCGCTTTGTCAAGGATGCTTTGGTGTTTCCATGTGGAGGGCGTACGGCACTTGAGGTTGGTTCCATATTGTTGCCTATTTATATTATGCTGATATAGATGTTGTGTTGCGTACAATAATGTATGCCATTAACCACCTTCGGTTGACTTAGTAGTCAATAAGAATCATGTAAGTAATAAGGGTTTAGAGAGAACGGGTTTAAGGCTCCAAGCCATGGTAGCCATTTTACCTAAGATTTAATATCCTACTAGTTTCTTTGGTAACAAAATGTAGTAGGTTTAGACGTTTGTTTTGTGAATATAGTCGAGGTGCGTATAAGCTGGTTGTCCACATATATAAAAACAATGCTTTCTATTTGGCTATGAAACACAAACACATGTTAGACACGCTTTGGATACGTGTCTGACATGCTAAAAACCATGTCTGAAAAAAAAATATTTTTTTTTCCTAATTTTGGACACGGTTAGATTCGACTTGGATATGCCTTTAGAAAATATTTAACCTAACAATTAAGAAAAAGATTGAGATTCTTTTATGGATTGGAACTTACATATGGTTCGTGTTTGTGCTTGTTAGCTTATTTAGATCAGGATTTTGTTTTAGATCAGTTGCAGTTTAGGATTTTGTTTTAGATCATTTGCATTTTTCTTATGTCAACTAAGATAGAACTTTTCATCAAGATGTTAGAGAGTTACAAAGTGGGCCCTTACAAAGTTTCATATGAAATTCACAAAAACTCACATCAAGCCATACAAACCGCCCAAAATTCAAGTTTCACTACCTACCCACAGTTCCTTAATTACAAAAGATCTTCCAAATTTGAAGAAATCACTGAAAATGAACAAAGTAGAATTTTTTTATCTAAAGAAATCCACCAGGAACAATCAAATTTTAAACACATTATCAAGAACACCTCCACCCAATCCTTAAGTAGCACCCTCAAAATCTTATTATTTGTTTAATTTCCAACCATAAAATTGCATAAGGTTGCGTTCATGGCATTTCTCCACAATTTCTTTGCTCTTTCTTCAAAAAAGAGTTCCACATATCAAATGTTTTACATTTTCTTTCACAATGTTATATCTTTTCACTTGTTCTTTAAAACATACACCATCACATTTTTACCTAGAATAAAAGTTGAATTGCTATTATTTTGCACAAACATGGTTACGTTGCAAATATTTTTATTATGGTTTTTGGTAATTTCACCAGGTATTGGAAGTTCAATTACCTGGAAAGAAGGTCGTGAGTGCAAGCGCCTTTTGGAATGGCATGCGAGGGAAAAAGTTGAAGAAACTCGATGAAAGTAAACATTTTTCGCACATCTCGTCGTGATATTTAGATGCATATAGGTGGAGAAATTCGATGAACGTAAATGTTTTTTTGCACATGTTGTGGTATTTAGATGTAATCTAGCTGATTCAAACTTCTGCATCTTTCATATAACTATTTTGTTTTTCTCATTTGTTAACATTGATCTATGAATATTGATTGATTATCTGAAATTGATCTTGTTTGTCGCTCACCTTGACTTTTTG

mRNA sequence

TTTCTTTTGAATATTATTAAAAAAGAAAAAGAAATTCTTTTGAATTTCCTTCTCCATGGTTAGTTCATCAGTGGATAAACAGTAAAAAGGCCAAGACGAAGCCGAAGGAGCCCCAGTTCCACCATTGAAGGAACAACATCAATGGCTTCCTCGCTCATGTTTCGTCGCTTTTGCTGTTTGCAGTCTCCAGCTTCTCCTTCTTCAGTTTTCTCCAAGAAGAAGCCCCTTGTTTTCTTGGGTTCTCCTCAGGTCTCAACCGCAGTTCTTGATGCTCTTCTTAATGTATCTTCCGCCTCAGATGCAGCTTTTGAGGTTGCAGCTATTGTTACTCAGCCACCTTCTAGAAGGGATAGGGGGAGAAAGATGATGCCTTCTCCAGTTGCACAATATGCCCTTGATAAAGGCTTCTCTTCTGACCTTATTCTTACACCTGAAAAAGCTGGAGAGGACGTGTTTTTGAGCACCTTGAAGGCTTTGCAACCTGAACTATGTATTACAGCAGCATATGGGAATATCTTACCGACCAAATTTCTCAATATTCCAGCATTGGGGACGGTCAATATTCACCCAAGTCTATTGCCATTATATCGTGGTGCTGCCCCTGTTCAGAGGGCGCTGCAGGACGGTGTTAAGGAGACTGGCGTATCACTGGCATTCACAGTTCGTGCATTGGATGCTGGACCCGTCATTGCTTATAAAAAATTTGAAGTTGATGAGCATATCAAGGCACCCGACTTACTTGCGTTGCTATTTTTAGAAGGTGGGGCATTCAGTGTCTGTCATGAACTTCCCTTGATCTTGATGCTGTCTCTAAGCTCTAAACTCTTGATTCGGGAACTTCCTTCTATACTTGATGGATCTGCTGAAAAGAAAGCGCAGCCTCAAGACGAATCTAAAGCTACCAAAGCTCCAAAGATAGCTGCCGATGAGGCATGGCTGTCATTTGATGAAGAGGCATATGTCCTACACAACAAGGTTCGTGCATTTGCAGGATGGCCTGGAACACGAGCTAAGGTTGTTGTTGCTGATGAGAAAAGTGGTCATGACGATATCCTAGAATTCAAAGTCATTACTACAAGAGTTTGCATCAATTGTAGTAGTCAGGAGACTCAAGCAGACGAGATCCGCTTTGTCAAGGATGCTTTGGTGTTTCCATGTGGAGGGCGTACGGCACTTGAGGTATTGGAAGTTCAATTACCTGGAAAGAAGGTCGTGAGTGCAAGCGCCTTTTGGAATGGCATGCGAGGGAAAAAGTTGAAGAAACTCGATGAAAGTAAACATTTTTCGCACATCTCGTCGTGATATTTAGATGCATATAGGTGGAGAAATTCGATGAACGTAAATGTTTTTTTGCACATGTTGTGGTATTTAGATGTAATCTAGCTGATTCAAACTTCTGCATCTTTCATATAACTATTTTGTTTTTCTCATTTGTTAACATTGATCTATGAATATTGATTGATTATCTGAAATTGATCTTGTTTGTCGCTCACCTTGACTTTTTG

Coding sequence (CDS)

ATGGCTTCCTCGCTCATGTTTCGTCGCTTTTGCTGTTTGCAGTCTCCAGCTTCTCCTTCTTCAGTTTTCTCCAAGAAGAAGCCCCTTGTTTTCTTGGGTTCTCCTCAGGTCTCAACCGCAGTTCTTGATGCTCTTCTTAATGTATCTTCCGCCTCAGATGCAGCTTTTGAGGTTGCAGCTATTGTTACTCAGCCACCTTCTAGAAGGGATAGGGGGAGAAAGATGATGCCTTCTCCAGTTGCACAATATGCCCTTGATAAAGGCTTCTCTTCTGACCTTATTCTTACACCTGAAAAAGCTGGAGAGGACGTGTTTTTGAGCACCTTGAAGGCTTTGCAACCTGAACTATGTATTACAGCAGCATATGGGAATATCTTACCGACCAAATTTCTCAATATTCCAGCATTGGGGACGGTCAATATTCACCCAAGTCTATTGCCATTATATCGTGGTGCTGCCCCTGTTCAGAGGGCGCTGCAGGACGGTGTTAAGGAGACTGGCGTATCACTGGCATTCACAGTTCGTGCATTGGATGCTGGACCCGTCATTGCTTATAAAAAATTTGAAGTTGATGAGCATATCAAGGCACCCGACTTACTTGCGTTGCTATTTTTAGAAGGTGGGGCATTCAGTGTCTGTCATGAACTTCCCTTGATCTTGATGCTGTCTCTAAGCTCTAAACTCTTGATTCGGGAACTTCCTTCTATACTTGATGGATCTGCTGAAAAGAAAGCGCAGCCTCAAGACGAATCTAAAGCTACCAAAGCTCCAAAGATAGCTGCCGATGAGGCATGGCTGTCATTTGATGAAGAGGCATATGTCCTACACAACAAGGTTCGTGCATTTGCAGGATGGCCTGGAACACGAGCTAAGGTTGTTGTTGCTGATGAGAAAAGTGGTCATGACGATATCCTAGAATTCAAAGTCATTACTACAAGAGTTTGCATCAATTGTAGTAGTCAGGAGACTCAAGCAGACGAGATCCGCTTTGTCAAGGATGCTTTGGTGTTTCCATGTGGAGGGCGTACGGCACTTGAGGTATTGGAAGTTCAATTACCTGGAAAGAAGGTCGTGAGTGCAAGCGCCTTTTGGAATGGCATGCGAGGGAAAAAGTTGAAGAAACTCGATGAAAGTAAACATTTTTCGCACATCTCGTCGTGA

Protein sequence

MASSLMFRRFCCLQSPASPSSVFSKKKPLVFLGSPQVSTAVLDALLNVSSASDAAFEVAAIVTQPPSRRDRGRKMMPSPVAQYALDKGFSSDLILTPEKAGEDVFLSTLKALQPELCITAAYGNILPTKFLNIPALGTVNIHPSLLPLYRGAAPVQRALQDGVKETGVSLAFTVRALDAGPVIAYKKFEVDEHIKAPDLLALLFLEGGAFSVCHELPLILMLSLSSKLLIRELPSILDGSAEKKAQPQDESKATKAPKIAADEAWLSFDEEAYVLHNKVRAFAGWPGTRAKVVVADEKSGHDDILEFKVITTRVCINCSSQETQADEIRFVKDALVFPCGGRTALEVLEVQLPGKKVVSASAFWNGMRGKKLKKLDESKHFSHISS

Homology

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BLAST of Lsi05G002900 vs. Swiss-Prot
Match: FMT_BACLD (Methionyl-tRNA formyltransferase OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / NBRC 12200 / NCIMB 9375 / NRRL NRS-1264 / Gibson 46) GN=fmt PE=3 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 4.7e-40
Identity = 119/352 (33.81%), Postives = 171/352 (48.58%), Query Frame = 1


Query: 29  LVFLGSPQVSTAVLDALLNVSSASDAAFEVAAIVTQPPSRRDRGRKMMPSPVAQYALDKG 88
           +VF+G+P  S  VL  L+      D  +EV  +VTQP   + R + M P PV + AL +G
Sbjct: 4   IVFMGTPDFSVPVLGTLI------DDGYEVVGVVTQPDRPKGRKKVMTPPPVKEEALRRG 63

Query: 89  FSSDLILTPEKAGEDVFLSTLKALQPELCITAAYGNILPTKFLNIPALGTVNIHPSLLPL 148
                +L PEK  E+     + AL+P+L +TAA+G ILP K L+ P  G +N+H SLLP 
Sbjct: 64  IP---VLQPEKVREEAETDKILALEPDLIVTAAFGQILPKKLLDYPKYGCINVHASLLPE 123

Query: 149 YRGAAPVQRALQDGVKETGVSLAFTVRALDAGPVIAYKKFEVDEHIKAPDLLALLFLEGG 208
            RG AP+  A+ +G ++TGV++ + V  LDAG ++A  + +++E      L   L   G 
Sbjct: 124 LRGGAPIHYAILEGKEKTGVTIMYMVEKLDAGDMLAKVEVDIEETDNVGTLHDKLSKAGA 183

Query: 209 AFSVCHELPLILMLSLSSKLLIRELPSILDGSAEKKAQPQDESKATKAPKIAADEAWLSF 268
           A                  LL   +P I+DGS     + QDE KAT AP I  ++  + +
Sbjct: 184 A------------------LLSETVPRIIDGSV--TPEKQDEQKATYAPNIKREQELIDW 243

Query: 269 DEEAYVLHNKVRAFAGWPGTRAKVVVADEKSGHDDILEFKVITTRVCINCSSQETQADEI 328
            +   VL+N+VR    WP      V     +G       KV   + C     Q    + +
Sbjct: 244 SKPGEVLYNQVRGLNPWP------VAYTVLNGQ----TLKVWAAKKC-QALKQAEPGEIV 303

Query: 329 RFVKDALVFPCGGRTALEVLEVQLPGKKVVSASAFWNG---MRGKKLKKLDE 378
              KD +V   G  TAL++ EVQ  GKK + A  F  G     G KL   DE
Sbjct: 304 TVEKDGIVVATGNDTALKLTEVQPAGKKRMKAEDFVRGAGLQAGMKLGHDDE 315

[Close]

BLAST of Lsi05G002900 vs. Swiss-Prot
Match: FMT_STACT (Methionyl-tRNA formyltransferase OS=Staphylococcus carnosus (strain TM300) GN=fmt PE=3 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 5.2e-39
Identity = 110/349 (31.52%), Postives = 178/349 (51.00%), Query Frame = 1


Query: 29  LVFLGSPQVSTAVLDALLNVSSASDAAFEVAAIVTQPPSRRDRGRKMMPSPVAQYALDKG 88
           ++F+G+P  ST VL+ L+       A  +V A+VTQP     R R M P PV + AL+ G
Sbjct: 4   VIFMGTPDFSTKVLEMLI-------AEEDVIAVVTQPDRPVGRKRVMTPPPVKEVALENG 63

Query: 89  FSSDLILTPEKAGEDVFLSTLKALQPELCITAAYGNILPTKFLNIPALGTVNIHPSLLPL 148
                +  PEK  +   L TL  ++P+L +TAA+G ILP   L+ P LG +N+H SLLP 
Sbjct: 64  IE---VYQPEKISQSDDLQTLIDMEPDLIVTAAFGQILPKSLLDAPKLGAINVHASLLPK 123

Query: 149 YRGAAPVQRALQDGVKETGVSLAFTVRALDAGPVIAYKKFEVDEHIKAPDLLALLFLEGG 208
           YRG AP+ +A+ DG KETGV++ +    LDAG +I+ +  E++ +     +         
Sbjct: 124 YRGGAPIHQAIIDGEKETGVTIMYMAPKLDAGDIISQQAIEIEANDNVESM--------- 183

Query: 209 AFSVCHELPLILMLSLSSKLLIRELPSILDGSAEKKAQPQDESKATKAPKIAADEAWLSF 268
                H+     +  L + LL + LP I++G+ ++ A  QD+ KAT A  I+ ++  + +
Sbjct: 184 -----HD----KLSFLGADLLKKTLPEIINGTNDRIA--QDDDKATFASNISREDERIDW 243

Query: 269 DEEAYVLHNKVRAFAGWPGTRAKVVVADEKSGHDDILEFKVITTRVCINCSSQETQADEI 328
            + A  ++N +R  + WP    K+          D    K+   R  I    +    + +
Sbjct: 244 TQSAEQVYNHIRGLSPWPVAYTKL----------DDTNMKLYAAR--IEEGKKGNPGEIL 303

Query: 329 RFVKDALVFPCGGRTALEVLEVQLPGKKVVSASAFWNGMR----GKKLK 374
              K A++   G   A+ + E+QL GKK +  + F +G +    GK+LK
Sbjct: 304 ETTKKAIIVGTGSDDAIALTEIQLSGKKRMPTANFLSGYQEDLVGKELK 310

[Close]

BLAST of Lsi05G002900 vs. Swiss-Prot
Match: FMT_KOSOT (Methionyl-tRNA formyltransferase OS=Kosmotoga olearia (strain TBF 19.5.1) GN=fmt PE=3 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.2e-37
Identity = 105/346 (30.35%), Postives = 168/346 (48.55%), Query Frame = 1


Query: 29  LVFLGSPQVSTAVLDALLNVSSASDAAFEVAAIVTQPPSRRDRGRKMMPSPVAQYALDKG 88
           +VF+G+P  +   L  L+      +  + V  + +QP   + RG+K++P+PV Q A + G
Sbjct: 3   IVFMGTPDFAAEHLRKLV------EKKYNVVGVFSQPDKPKGRGKKLIPTPVKQVAREYG 62

Query: 89  FSSDLILTPEKAGEDVFLSTLKALQPELCITAAYGNILPTKFLNIPALGTVNIHPSLLPL 148
                +  P+   +      LK L+P++ IT AYG +L  +   +P LG  N+H SLLP 
Sbjct: 63  IP---VFQPKSVNKGEGFEALKELKPDIIITVAYGKLLKQQVFELPPLGCYNVHASLLPK 122

Query: 149 YRGAAPVQRALQDGVKETGVSLAFTVRALDAGPVIAYKKFEVDEHIKAPDLLALLFLEGG 208
           YRGAAP+QRAL++G KETG+++      +D+GP+   ++ E+        L   L     
Sbjct: 123 YRGAAPIQRALENGEKETGITIFKIDEGMDSGPIALQERIEISSDDNFGTLKKKL----- 182

Query: 209 AFSVCHELPLILMLSLSSKLLIRELPSILDGSAEKKAQPQDESKATKAPKIAADEAWLSF 268
                         +L  KLLI  L  I  G  E K  PQD S+AT APKI  ++  L  
Sbjct: 183 -------------CNLGKKLLIEFLKKISAG--EIKLTPQDHSQATYAPKITKEDTILIE 242

Query: 269 DEEAYVLHNKVRAFAGWPGTRAKVVVADEKSGHDDILEFKVITTRVCINCSSQETQADEI 328
            +    + NK+RA+   PG   ++            L  K+    +C NC         I
Sbjct: 243 FDNGERVFNKIRAYDPEPGVTTRL----------GELRVKLFGAGICDNCCVDAEPGQII 302

Query: 329 RFVKDALVFPCGGRTALEVLEVQLPGKKVVSASAFWNGMRGKKLKK 375
              KD++V  C  + A+++ ++Q PGKKV++    W    G+ +++
Sbjct: 303 SISKDSMVVAC-KKGAVKISKIQFPGKKVITV---WQAKSGRLIEE 305

[Close]

BLAST of Lsi05G002900 vs. Swiss-Prot
Match: FMT_MOOTA (Methionyl-tRNA formyltransferase OS=Moorella thermoacetica (strain ATCC 39073) GN=fmt PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 3.8e-37
Identity = 112/338 (33.14%), Postives = 163/338 (48.22%), Query Frame = 1


Query: 29  LVFLGSPQVSTAVLDALLNVSSASDAAFEVAAIVTQPPSRRDRGRKMMPSPVAQYALDKG 88
           LVF+G+P  +   L AL+       A  E AA++TQP   R RG+K++P PV   AL  G
Sbjct: 3   LVFMGTPDFAVPSLQALVA------AGHEFAAVITQPDRPRGRGKKLLPPPVKSTALAAG 62

Query: 89  FSSDLILTPEKAGEDVFLSTLKALQPELCITAAYGNILPTKFLNIPALGTVNIHPSLLPL 148
                +  P    +  FL  L+ LQPEL +  A+G IL  + L++PA G VN+H SLLP 
Sbjct: 63  LP---VRQPSDMKDREFLEDLRLLQPELIVVVAFGRILSREILDLPARGCVNLHASLLPR 122

Query: 149 YRGAAPVQRALQDGVKETGVSLAFTVRALDAGPVIAYKKFEVDEHIKAPDLLALLFLEGG 208
           YRGAAP+ RA+ +G  ETGV+  +    LDAG +I  +K  +       ++   L  E G
Sbjct: 123 YRGAAPIHRAVMNGEVETGVTTMWMAPQLDAGDIILQEKLPIPPEATTGEIHDRL-AEVG 182

Query: 209 AFSVCHELPLILMLSLSSKLLIRELPSILDGSAEKKAQPQDESKATKAPKIAADEAWLSF 268
           A  + H L LI                    ++     PQDE+ AT AP +  +E  + +
Sbjct: 183 AGLLVHTLELI-------------------AASRAPRLPQDEALATYAPPLKPEEEVIHW 242

Query: 269 DEEAYVLHNKVRAFAGWPGTRAKVVVADEKSGHDDILEFKVITTRVCINCSSQETQADEI 328
           ++ A V++N++R    WPG          +SG    +    +T    I  + +  +    
Sbjct: 243 EQPAQVIYNQIRGLNPWPGAYTL------RSGERLKIYGARLTDPSAIGRAGRVVEVGRE 299

Query: 329 RFVKDALVFPCGGRTALEVLEVQLPGKKVVSASAFWNG 367
            FV  A      G   L V  VQ PGKK++ ASA+  G
Sbjct: 303 GFVVQA------GTGRLLVTSVQPPGKKIMPASAYLQG 299

[Close]

BLAST of Lsi05G002900 vs. Swiss-Prot
Match: FMT_BACP2 (Methionyl-tRNA formyltransferase OS=Bacillus pumilus (strain SAFR-032) GN=fmt PE=3 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 6.4e-37
Identity = 116/354 (32.77%), Postives = 166/354 (46.89%), Query Frame = 1


Query: 29  LVFLGSPQVSTAVLDALLNVSSASDAAFEVAAIVTQPPSRRDRGRKMMPSPVAQYALDKG 88
           +VF+G+P  S  VL  L+         +EV  +VTQP   + R R + P PV   AL  G
Sbjct: 4   IVFMGTPDFSVPVLQTLIT------EGYEVVGVVTQPDRPKGRKRVLTPPPVKVEALKHG 63

Query: 89  FSSDLILTPEKAGEDVFLSTLKALQPELCITAAYGNILPTKFLNIPALGTVNIHPSLLPL 148
                +L PEK   D  +  + AL+P+L +TAA+G ILP + L+ P  G +N+H SLLP 
Sbjct: 64  IP---VLQPEKVRLDEEIDKVLALKPDLIVTAAFGQILPKRLLDEPQFGCINVHASLLPE 123

Query: 149 YRGAAPVQRALQDGVKETGVSLAFTVRALDAGPVIAYKKFEVDEHIKAPDLLALLFLEGG 208
            RG AP+  A+  G K+TGV++ + V  LDAG +I+  + E+DE      L   L + G 
Sbjct: 124 LRGGAPIHYAILQGKKKTGVTIMYMVERLDAGDMISKVEVEIDELDNVGTLHDKLSVAGA 183

Query: 209 AFSVCHELPLILMLSLSSKLLIRELPSILDGSAEKKAQPQDESKATKAPKIAADEAWLSF 268
           A                  LL   +P++L GS      PQ+E  AT AP I  ++  L +
Sbjct: 184 A------------------LLKDTVPNVLSGSI--SPIPQNEDAATYAPNIKREQERLDW 243

Query: 269 DEEAYVLHNKVRAFAGWPGTRAKVVVADEKSGHDDILEFKVITTRVCINCSSQETQADEI 328
            +    L+N+VR    WP     V   +    H  + E K +   V      QE     I
Sbjct: 244 TKTGEELYNQVRGLNPWP-----VAYTEWNGAHLKVWEAKKVPLEV------QEEAGKVI 303

Query: 329 RFVKDALVFPCGGRTALEVLEVQLPGKKVVSASAFWNGMR---GKKLKKLDESK 380
              K+  V   G +  L +  VQ  GKK +S   F  G     G+KL  ++E K
Sbjct: 304 ELQKEGPVIGTGNKQGLLLTGVQPAGKKKMSGEDFLRGANIEIGQKLGLMNEEK 317

[Close]

BLAST of Lsi05G002900 vs. TrEMBL
Match: A0A067F728_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g048078mg PE=3 SV=1)

HSP 1 Score: 515.0 bits (1325), Expect = 7.9e-143
Identity = 273/380 (71.84%), Postives = 304/380 (80.00%), Query Frame = 1


Query: 1   MASSLMFRRFCCLQSPASPSSV-----FSKKKPLVFLGSPQVSTAVLDALLNVSSASDAA 60
           M SSLM RRF C + PA+ S+       S+KKPLVFLGSPQVS  VLDAL N SS+ D+ 
Sbjct: 19  MNSSLMIRRFFCFKGPATSSTTPSAFSVSRKKPLVFLGSPQVSVNVLDALFNASSSPDSI 78

Query: 61  FEVAAIVTQPPSRRDRGRKMMPSPVAQYALDKGFSSDLILTPEKAGEDVFLSTLKALQPE 120
           FEVAAIVTQPPSRRDRGRK++PSPVAQYALD+GF +DLI TPE+AGED FLS L+ALQPE
Sbjct: 79  FEVAAIVTQPPSRRDRGRKVLPSPVAQYALDRGFPADLIFTPERAGEDAFLSNLRALQPE 138

Query: 121 LCITAAYGNILPTKFLNIPALGTVNIHPSLLPLYRGAAPVQRALQDGVKETGVSLAFTVR 180
           LCITAAYGNILP+KFLNIP +GTVNIHPSLLPLYRGAAPVQRALQ G KETGVSLAFTVR
Sbjct: 139 LCITAAYGNILPSKFLNIPPMGTVNIHPSLLPLYRGAAPVQRALQGGAKETGVSLAFTVR 198

Query: 181 ALDAGPVIAYKKFEVDEHIKAPDLLALLFLEGGAFSVCHELPLILMLSLSSKLLIRELPS 240
           ALDAGPVIA +K EVD+ IKAP+LL LLF EG                  S+LLIRELPS
Sbjct: 199 ALDAGPVIAREKMEVDDQIKAPELLVLLFSEG------------------SELLIRELPS 258

Query: 241 ILDGSAEKKAQPQDESKATKAPKIAADEAWLSFDEEAYVLHNKVRAFAGWPGTRAKVVVA 300
           ILDGSA  KAQPQD+SKAT APKI  +E+WLSFDEEA VLHNKVRAFAGWPGTRAK+ V 
Sbjct: 259 ILDGSARVKAQPQDDSKATLAPKITTEESWLSFDEEAVVLHNKVRAFAGWPGTRAKMAVV 318

Query: 301 DEKSGHDDILEFKVITTRVCINCSSQETQADEIRFVKDALVFPCGGRTALEVLEVQLPGK 360
           D+++G   I+E K+ITTRVC N  + E   D I F KDALV PCG  TALEVLEVQLPGK
Sbjct: 319 DDRNGQQSIVELKIITTRVCPNIQTNEV--DGITFKKDALVVPCGECTALEVLEVQLPGK 378

Query: 361 KVVSASAFWNGMRGKKLKKL 376
           K VSA+AFWNG+RG+KLK L
Sbjct: 379 KAVSAAAFWNGLRGQKLKVL 378

[Close]

BLAST of Lsi05G002900 vs. TrEMBL
Match: D7TSU1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g01830 PE=3 SV=1)

HSP 1 Score: 513.1 bits (1320), Expect = 3.0e-142
Identity = 271/382 (70.94%), Postives = 310/382 (81.15%), Query Frame = 1


Query: 1   MASSLMFRRFCCLQSPASPSSVFS-------KKKPLVFLGSPQVSTAVLDALLNVSSASD 60
           M SSLM RRF  L + +S SS  S       K+K LVFLGSPQVS AVLD L N S+A D
Sbjct: 28  MNSSLMLRRFFTLNATSSSSSSCSASLKPPSKRKQLVFLGSPQVSAAVLDDLFNASTAPD 87

Query: 61  AAFEVAAIVTQPPSRRDRGRKMMPSPVAQYALDKGFSSDLILTPEKAGEDVFLSTLKALQ 120
           + FEVAAIVTQPPS R+RGRK+MPSPVAQ+ALD+GF SDLI TPEKAGE++FLS+L+ALQ
Sbjct: 88  SMFEVAAIVTQPPSGRNRGRKVMPSPVAQHALDRGFPSDLIFTPEKAGEEIFLSSLRALQ 147

Query: 121 PELCITAAYGNILPTKFLNIPALGTVNIHPSLLPLYRGAAPVQRALQDGVKETGVSLAFT 180
           PELCITAAYGNILP KFL IP +GTVNIHPSLLPLYRGAAPVQRALQDGVKETGVSLAFT
Sbjct: 148 PELCITAAYGNILPRKFLEIPPMGTVNIHPSLLPLYRGAAPVQRALQDGVKETGVSLAFT 207

Query: 181 VRALDAGPVIAYKKFEVDEHIKAPDLLALLFLEGGAFSVCHELPLILMLSLSSKLLIREL 240
           VRALDAGPVIA ++FEVD+ IKA DLLALLF +G                  SKLLI EL
Sbjct: 208 VRALDAGPVIACERFEVDDQIKATDLLALLFSQG------------------SKLLIHEL 267

Query: 241 PSILDGSAEKKAQPQDESKATKAPKIAADEAWLSFDEEAYVLHNKVRAFAGWPGTRAKVV 300
           PSI DGSA  KAQPQD+SKAT APKI  +E+WLSFD+EA VLHNKVRAFAGWPGTRAKVV
Sbjct: 268 PSIFDGSANLKAQPQDDSKATLAPKITPEESWLSFDQEASVLHNKVRAFAGWPGTRAKVV 327

Query: 301 VADEKSGHDDILEFKVITTRVCINCSSQETQADEIRFVKDALVFPCGGRTALEVLEVQLP 360
           V D+K+G  ++L+ K+ITTRVC   + Q  +AD++RF+KDALVFPC G +ALEVLEVQLP
Sbjct: 328 VIDDKNGEHNVLDLKIITTRVCGQSNIQVNEADDVRFIKDALVFPCSGSSALEVLEVQLP 387

Query: 361 GKKVVSASAFWNGMRGKKLKKL 376
           GKKVV+A+AFWNG+RG++LK L
Sbjct: 388 GKKVVNAAAFWNGLRGQRLKIL 391

[Close]

BLAST of Lsi05G002900 vs. TrEMBL
Match: B9SPZ8_RICCO (Methionyl-tRNA formyltransferase, putative OS=Ricinus communis GN=RCOM_0467230 PE=3 SV=1)

HSP 1 Score: 508.4 bits (1308), Expect = 7.4e-141
Identity = 268/378 (70.90%), Postives = 304/378 (80.42%), Query Frame = 1


Query: 2   ASSLMFRRFCCLQSPASPS----SVFSKKKPLVFLGSPQVSTAVLDALLNVSSASDAAFE 61
           +SSLM RRF C  S +  +    S  SKKKPLVFLGSPQVST VLDAL N SS+ ++ FE
Sbjct: 3   SSSLMLRRFRCFNSASVAAVPCASSTSKKKPLVFLGSPQVSTTVLDALFNASSSPNSIFE 62

Query: 62  VAAIVTQPPSRRDRGRKMMPSPVAQYALDKGFSSDLILTPEKAGEDVFLSTLKALQPELC 121
           VAAIVTQPP+R+ RGRK+MPSP AQYALD+GF  DLI TPE+AGED FL +LK LQPELC
Sbjct: 63  VAAIVTQPPARKGRGRKLMPSPAAQYALDRGFPPDLIFTPERAGEDSFLCSLKELQPELC 122

Query: 122 ITAAYGNILPTKFLNIPALGTVNIHPSLLPLYRGAAPVQRALQDGVKETGVSLAFTVRAL 181
           ITAAYGNILPTKFLNIP++G VNIHPSLLPLYRGAAPVQRALQDGVKETGVSLAFTVRAL
Sbjct: 123 ITAAYGNILPTKFLNIPSMGIVNIHPSLLPLYRGAAPVQRALQDGVKETGVSLAFTVRAL 182

Query: 182 DAGPVIAYKKFEVDEHIKAPDLLALLFLEGGAFSVCHELPLILMLSLSSKLLIRELPSIL 241
           DAGPVIA+++ +VD+ IKAPDLLALLF EG                  S+LLI ELPSI 
Sbjct: 183 DAGPVIAHERLDVDDQIKAPDLLALLFSEG------------------SRLLIHELPSIF 242

Query: 242 DGSAEKKAQPQDESKATKAPKIAADEAWLSFDEEAYVLHNKVRAFAGWPGTRAKVVVADE 301
           DGSA +KA  QD+SKAT APKI  +E+WLSFDEEA VLHNKVRAFAGWPGTRAKV + D 
Sbjct: 243 DGSAREKALLQDDSKATLAPKITPEESWLSFDEEASVLHNKVRAFAGWPGTRAKVALVDG 302

Query: 302 KSGHDDILEFKVITTRVCINCSSQETQADEIRFVKDALVFPCGGRTALEVLEVQLPGKKV 361
           K G++DI+E KVITTRVC +   Q  + D+I F+K +LVFPCG  TALEVLEVQLPGKK 
Sbjct: 303 KDGNEDIIELKVITTRVCHHGIPQGNEVDDITFLKGSLVFPCGKSTALEVLEVQLPGKKA 362

Query: 362 VSASAFWNGMRGKKLKKL 376
           VSA+AFWNG+RG+KLKKL
Sbjct: 363 VSAAAFWNGLRGQKLKKL 362

[Close]

BLAST of Lsi05G002900 vs. TrEMBL
Match: A0A0D2N7B6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G085900 PE=3 SV=1)

HSP 1 Score: 506.1 bits (1302), Expect = 3.7e-140
Identity = 272/385 (70.65%), Postives = 304/385 (78.96%), Query Frame = 1


Query: 1   MASSLMFRRFCCLQSPASPSSVF---------SKKKPLVFLGSPQVSTAVLDALLNVSSA 60
           M S+ M RRF    + AS SS+          SKKK LVFLGSPQVS  VLDAL N S+A
Sbjct: 1   MYSTSMLRRFFFFNAAASSSSITPSSYTTTITSKKKSLVFLGSPQVSATVLDALFNASAA 60

Query: 61  SDAAFEVAAIVTQPPSRRDRGRKMMPSPVAQYALDKGFSSDLILTPEKAGEDVFLSTLKA 120
             ++FEV AIVTQPPSRRDRGRK+MPSPVAQYALD+GF SDLI TPE+AGE+ FLS L+A
Sbjct: 61  PSSSFEVTAIVTQPPSRRDRGRKVMPSPVAQYALDRGFPSDLIFTPERAGEETFLSNLRA 120

Query: 121 LQPELCITAAYGNILPTKFLNIPALGTVNIHPSLLPLYRGAAPVQRALQDGVKETGVSLA 180
           LQPELCITAAYGNILPTKFLNIP LGTVNIHPSLLPLYRGAAPVQRALQDGVKETGVSLA
Sbjct: 121 LQPELCITAAYGNILPTKFLNIPPLGTVNIHPSLLPLYRGAAPVQRALQDGVKETGVSLA 180

Query: 181 FTVRALDAGPVIAYKKFEVDEHIKAPDLLALLFLEGGAFSVCHELPLILMLSLSSKLLIR 240
           FTVRALDAGPVIA ++ EVD+ IKAPDLLALLF EG                  SKLLI 
Sbjct: 181 FTVRALDAGPVIARERVEVDDQIKAPDLLALLFSEG------------------SKLLIC 240

Query: 241 ELPSILDGSAEKKAQPQDESKATKAPKIAADEAWLSFDEEAYVLHNKVRAFAGWPGTRAK 300
           +LPSI DGSAE  A+PQD+SK T APKI+ +E+WLSFDEEA +LHNKVRAFAGWPGTRAK
Sbjct: 241 KLPSIFDGSAEVNAEPQDDSKVTLAPKISPEESWLSFDEEALILHNKVRAFAGWPGTRAK 300

Query: 301 V-VVADEKSGHDDILEFKVITTRVCINCSSQETQADEIRFVKDALVFPCGGRTALEVLEV 360
           V V+ DE S + +ILE K+ITTRV  N   ++    +I F+KDALVFPCGGRT LEVLEV
Sbjct: 301 VLVIDDESSNNHNILELKIITTRVGSNDKIRDNDVHDIAFIKDALVFPCGGRTDLEVLEV 360

Query: 361 QLPGKKVVSASAFWNGMRGKKLKKL 376
           QLPGKKV SA+AFWNG+RG+KLK L
Sbjct: 361 QLPGKKVTSAAAFWNGLRGQKLKTL 367

[Close]

BLAST of Lsi05G002900 vs. TrEMBL
Match: D7KSH9_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_894179 PE=3 SV=1)

HSP 1 Score: 505.4 bits (1300), Expect = 6.3e-140
Identity = 261/373 (69.97%), Postives = 302/373 (80.97%), Query Frame = 1


Query: 5   LMFRRFCCLQSPASPSSVFS--KKKPLVFLGSPQVSTAVLDALLNVSSASDAAFEVAAIV 64
           ++ RRF C  + ++ SS+    KKKPL+FLGSPQVS  VL+AL N S+A +++FEVA IV
Sbjct: 1   MILRRFICYNASSTVSSIAPSPKKKPLIFLGSPQVSVTVLEALFNASAAPNSSFEVAGIV 60

Query: 65  TQPPSRRDRGRKMMPSPVAQYALDKGFSSDLILTPEKAGEDVFLSTLKALQPELCITAAY 124
           TQPPSRRDRGRK++PSPVAQYALDKG  SDLI +PEKAG++ FLS L+ LQPELCITAAY
Sbjct: 61  TQPPSRRDRGRKVLPSPVAQYALDKGLPSDLIFSPEKAGDEAFLSALRELQPELCITAAY 120

Query: 125 GNILPTKFLNIPALGTVNIHPSLLPLYRGAAPVQRALQDGVKETGVSLAFTVRALDAGPV 184
           GNILPTKFL IP  GTVNIHPSLLPLYRGAAPVQRALQDGV ETGVSLAFTVR LDAGPV
Sbjct: 121 GNILPTKFLKIPLHGTVNIHPSLLPLYRGAAPVQRALQDGVPETGVSLAFTVRKLDAGPV 180

Query: 185 IAYKKFEVDEHIKAPDLLALLFLEGGAFSVCHELPLILMLSLSSKLLIRELPSILDGSAE 244
           IA K+F+VD+ IKAP+LL+ LF EG                  SKLLIRELPSI DGSA+
Sbjct: 181 IASKRFQVDDLIKAPELLSFLFSEG------------------SKLLIRELPSIFDGSAK 240

Query: 245 KKAQPQDESKATKAPKIAADEAWLSFDEEAYVLHNKVRAFAGWPGTRAKVVVADEKSGHD 304
            KA PQD+SKAT APKIA DEAWLSFDEEA+VLHNKVRAFAGWPGTRAKVVV D+KSG  
Sbjct: 241 SKAAPQDDSKATLAPKIAPDEAWLSFDEEAFVLHNKVRAFAGWPGTRAKVVVLDDKSGQQ 300

Query: 305 DILEFKVITTRVCINCSSQETQADEIRFVKDALVFPCGGRTALEVLEVQLPGKKVVSASA 364
           ++LE K+++TRVC +   Q+   D + F K +LVFPCGG TALEVLEVQLPGKK ++A+A
Sbjct: 301 NVLELKIMSTRVCKDLEIQDGGQDYVTFKKGSLVFPCGGGTALEVLEVQLPGKKAINAAA 355

Query: 365 FWNGMRGKKLKKL 376
           FWNG+RG+KLKKL
Sbjct: 361 FWNGLRGQKLKKL 355

[Close]

BLAST of Lsi05G002900 vs. TAIR10
Match: AT1G66520.1 (AT1G66520.1 formyltransferase, putative)

HSP 1 Score: 502.3 bits (1292), Expect = 2.7e-142
Identity = 257/373 (68.90%), Postives = 303/373 (81.23%), Query Frame = 1


Query: 5   LMFRRFCCLQSPASPSSVFS--KKKPLVFLGSPQVSTAVLDALLNVSSASDAAFEVAAIV 64
           ++ RRF C  + ++ SS+    KKKPL+FLGSPQVS +VL+AL N S+A +++FEVA IV
Sbjct: 1   MILRRFICYNASSTVSSIAPSPKKKPLIFLGSPQVSVSVLEALFNASNAPNSSFEVAGIV 60

Query: 65  TQPPSRRDRGRKMMPSPVAQYALDKGFSSDLILTPEKAGEDVFLSTLKALQPELCITAAY 124
           TQPPSRRDRG+K++PSPVAQYALDKG  SDLI +PEKAG++ FLS L+ LQPELCITAAY
Sbjct: 61  TQPPSRRDRGKKVLPSPVAQYALDKGLPSDLIFSPEKAGDEAFLSALRELQPELCITAAY 120

Query: 125 GNILPTKFLNIPALGTVNIHPSLLPLYRGAAPVQRALQDGVKETGVSLAFTVRALDAGPV 184
           GNILPTKFL IP  GTVNIHPSLLPLYRGAAPVQRALQDGV ETGVSLAFTVR LDAGPV
Sbjct: 121 GNILPTKFLKIPVHGTVNIHPSLLPLYRGAAPVQRALQDGVPETGVSLAFTVRKLDAGPV 180

Query: 185 IAYKKFEVDEHIKAPDLLALLFLEGGAFSVCHELPLILMLSLSSKLLIRELPSILDGSAE 244
           IA K+F+VD+ IKAP+LL+ LF EG                  S LLIRELPSI DGSA+
Sbjct: 181 IASKRFQVDDLIKAPELLSFLFSEG------------------SNLLIRELPSIFDGSAK 240

Query: 245 KKAQPQDESKATKAPKIAADEAWLSFDEEAYVLHNKVRAFAGWPGTRAKVVVADEKSGHD 304
            KA PQD+SKAT APKIA DEAWLSFD+EA+VLHNKVRAFAGWPGTRAKVVV DEKSG  
Sbjct: 241 SKAAPQDDSKATLAPKIAPDEAWLSFDQEAFVLHNKVRAFAGWPGTRAKVVVLDEKSGQQ 300

Query: 305 DILEFKVITTRVCINCSSQETQADEIRFVKDALVFPCGGRTALEVLEVQLPGKKVVSASA 364
           ++LE K+++TRVC +   Q+++ D + F K +L+FPC G TALEVLEVQLPGKK ++A+A
Sbjct: 301 NVLELKIMSTRVCKDLEIQDSEQDYVTFKKGSLIFPCRGGTALEVLEVQLPGKKAINAAA 355

Query: 365 FWNGMRGKKLKKL 376
           FWNG+RG+KLKKL
Sbjct: 361 FWNGLRGQKLKKL 355

[Close]

BLAST of Lsi05G002900 vs. TAIR10
Match: AT5G47435.2 (AT5G47435.2 formyltetrahydrofolate deformylase, putative)

HSP 1 Score: 53.5 bits (127), Expect = 3.3e-07
Identity = 31/88 (35.23%), Postives = 42/88 (47.73%), Query Frame = 1


Query: 96  TPEKAGEDVFLSTLKALQPELCITAAYGNILPTKFLNIPALGTVNIHPSLLPLYRGAAPV 155
           T E   ED  L  +K    +  + A Y  IL   FL       +NIH  LLP ++G  P 
Sbjct: 187 TKENKREDDILELVK--DTDFLVLARYMQILSGNFLKGYGKDVINIHHGLLPSFKGGYPA 246

Query: 156 QRALQDGVKETGVSLAFTVRALDAGPVI 184
           ++A   GVK  G +  F    LD+GP+I
Sbjct: 247 KQAFDAGVKLIGATSHFVTEELDSGPII 272

[Close]

BLAST of Lsi05G002900 vs. TAIR10
Match: AT4G17360.1 (AT4G17360.1 Formyl transferase)

HSP 1 Score: 50.8 bits (120), Expect = 2.1e-06
Identity = 29/88 (32.95%), Postives = 43/88 (48.86%), Query Frame = 1


Query: 96  TPEKAGEDVFLSTLKALQPELCITAAYGNILPTKFLNIPALGTVNIHPSLLPLYRGAAPV 155
           T +   E+  L  +K    +  + A Y  +L   FL       +NIH  LLP ++G  PV
Sbjct: 192 TDQNKIEEEILELVKGT--DFLVLARYMQLLSGNFLKGYGKDVINIHHGLLPSFKGRNPV 251

Query: 156 QRALQDGVKETGVSLAFTVRALDAGPVI 184
           ++A   GVK  G +  F    LD+GP+I
Sbjct: 252 KQAFDAGVKLIGATTHFVTEELDSGPII 277

[Close]

BLAST of Lsi05G002900 vs. NCBI nr
Match: gi|659114520|ref|XP_008457092.1| (PREDICTED: cytosolic 10-formyltetrahydrofolate dehydrogenase isoform X2 [Cucumis melo])

HSP 1 Score: 648.3 bits (1671), Expect = 8.6e-183
Identity = 334/384 (86.98%), Postives = 350/384 (91.15%), Query Frame = 1


Query: 1   MASSLMFRRFCCLQSPASPSSVFSKKKPLVFLGSPQVSTAVLDALLNVSSASDAAFEVAA 60
           M SSLMFRRF C  SP+SPSS+FSKKKPLVFLGSPQVSTAVLDALLN SS++DAAFEVAA
Sbjct: 1   MTSSLMFRRFSCFHSPSSPSSLFSKKKPLVFLGSPQVSTAVLDALLNASSSADAAFEVAA 60

Query: 61  IVTQPPSRRDRGRKMMPSPVAQYALDKGFSSDLILTPEKAGEDVFLSTLKALQPELCITA 120
           IVTQPPSRRDRGRK+MPSPVAQYALDKGFSSDLILTPE+AGED FLSTLKALQPELCITA
Sbjct: 61  IVTQPPSRRDRGRKLMPSPVAQYALDKGFSSDLILTPERAGEDTFLSTLKALQPELCITA 120

Query: 121 AYGNILPTKFLNIPALGTVNIHPSLLPLYRGAAPVQRALQDGVKETGVSLAFTVRALDAG 180
           AYGNILPT+FLNIPALGTVNIHPSLLPLYRGAAPVQRALQDGVKETGVSLAFTVRALDAG
Sbjct: 121 AYGNILPTEFLNIPALGTVNIHPSLLPLYRGAAPVQRALQDGVKETGVSLAFTVRALDAG 180

Query: 181 PVIAYKKFEVDEHIKAPDLLALLFLEGGAFSVCHELPLILMLSLSSKLLIRELPSILDGS 240
           PVIA +KFEVDEHIKAPDLLALLFLEG                  SKLLIRELPSILDGS
Sbjct: 181 PVIASEKFEVDEHIKAPDLLALLFLEG------------------SKLLIRELPSILDGS 240

Query: 241 AEKKAQPQDESKATKAPKIAADEAWLSFDEEAYVLHNKVRAFAGWPGTRAKVVVADEKSG 300
           AEKKAQPQDESKATKAPKIA DEAWLSFD+EAYVLHNKVRAFAGWPGTRAK+V+ DEKSG
Sbjct: 241 AEKKAQPQDESKATKAPKIAPDEAWLSFDQEAYVLHNKVRAFAGWPGTRAKIVIVDEKSG 300

Query: 301 HDDILEFKVITTRVCINCSSQETQADEIRFVKDALVFPCGGRTALEVLEVQLPGKKVVSA 360
            DDILEFK+ITTR+ INCSSQETQADEIRFVKDALVFPCGG T LEVLEVQLPGKKVV+A
Sbjct: 301 RDDILEFKIITTRLNINCSSQETQADEIRFVKDALVFPCGGTTPLEVLEVQLPGKKVVNA 360

Query: 361 SAFWNGMRGKKLKKLDESKHFSHI 385
           SAFWNGM+GKKLKK D SKHF H+
Sbjct: 361 SAFWNGMQGKKLKKFDASKHFLHV 366

[Close]

BLAST of Lsi05G002900 vs. NCBI nr
Match: gi|449445959|ref|XP_004140739.1| (PREDICTED: mitochondrial 10-formyltetrahydrofolate dehydrogenase isoform X1 [Cucumis sativus])

HSP 1 Score: 647.1 bits (1668), Expect = 1.9e-182
Identity = 332/386 (86.01%), Postives = 350/386 (90.67%), Query Frame = 1


Query: 1   MASSLMFRRFCCLQSPASPSSVFSKKKPLVFLGSPQVSTAVLDALLNVSSASDAAFEVAA 60
           M SSLMFRRF C  SP+SPSSVFSKKKPLVFLGSPQVST VLDALLN SS +DAAFE+AA
Sbjct: 1   MTSSLMFRRFSCFHSPSSPSSVFSKKKPLVFLGSPQVSTVVLDALLNASSLADAAFEIAA 60

Query: 61  IVTQPPSRRDRGRKMMPSPVAQYALDKGFSSDLILTPEKAGEDVFLSTLKALQPELCITA 120
           IVTQPPSRRDRGRK+MPSPVAQYALDKGFSSDLILTPEKAGED+FLSTLK L+PELCITA
Sbjct: 61  IVTQPPSRRDRGRKLMPSPVAQYALDKGFSSDLILTPEKAGEDMFLSTLKVLEPELCITA 120

Query: 121 AYGNILPTKFLNIPALGTVNIHPSLLPLYRGAAPVQRALQDGVKETGVSLAFTVRALDAG 180
           AYGNILPTKFLNIPALGTVNIHPSLLPLYRGAAPVQRALQDGVKETGVSLAFTVRALDAG
Sbjct: 121 AYGNILPTKFLNIPALGTVNIHPSLLPLYRGAAPVQRALQDGVKETGVSLAFTVRALDAG 180

Query: 181 PVIAYKKFEVDEHIKAPDLLALLFLEGGAFSVCHELPLILMLSLSSKLLIRELPSILDGS 240
           P+IA +KFEV+EHIKAPDLLALLFLEG                  SKLLIRELPSILDGS
Sbjct: 181 PIIASEKFEVNEHIKAPDLLALLFLEG------------------SKLLIRELPSILDGS 240

Query: 241 AEKKAQPQDESKATKAPKIAADEAWLSFDEEAYVLHNKVRAFAGWPGTRAKVVVADEKSG 300
           AEKKAQPQDESKATKAPKIA DEAWLSFD+EAYVLHNKVRAFAGWPGTRAK+VV DEKSG
Sbjct: 241 AEKKAQPQDESKATKAPKIAPDEAWLSFDQEAYVLHNKVRAFAGWPGTRAKIVVVDEKSG 300

Query: 301 HDDILEFKVITTRVCINCSSQETQADEIRFVKDALVFPCGGRTALEVLEVQLPGKKVVSA 360
           HDDILEFK+ITTR+ +NCSSQETQADEIRFVKDALVFPCGG T+LEVLEVQLPGKKV+SA
Sbjct: 301 HDDILEFKIITTRLNVNCSSQETQADEIRFVKDALVFPCGGHTSLEVLEVQLPGKKVISA 360

Query: 361 SAFWNGMRGKKLKKLDESKHFSHISS 387
           SAFWNGM+GKKLKK D SKHF  + S
Sbjct: 361 SAFWNGMQGKKLKKFDASKHFLRVLS 368

[Close]

BLAST of Lsi05G002900 vs. NCBI nr
Match: gi|659114518|ref|XP_008457091.1| (PREDICTED: cytosolic 10-formyltetrahydrofolate dehydrogenase isoform X1 [Cucumis melo])

HSP 1 Score: 632.9 bits (1631), Expect = 3.7e-178
Identity = 334/413 (80.87%), Postives = 350/413 (84.75%), Query Frame = 1


Query: 1   MASSLMFRRFCCLQSPASPSSVFSKKKPLVFLGSPQVSTAVLDALLNVSSASDAAFEVAA 60
           M SSLMFRRF C  SP+SPSS+FSKKKPLVFLGSPQVSTAVLDALLN SS++DAAFEVAA
Sbjct: 1   MTSSLMFRRFSCFHSPSSPSSLFSKKKPLVFLGSPQVSTAVLDALLNASSSADAAFEVAA 60

Query: 61  IVTQPPSRRDRGRKMMPSPVAQYALDKGFSSDLILTPEKAGE------------------ 120
           IVTQPPSRRDRGRK+MPSPVAQYALDKGFSSDLILTPE+AGE                  
Sbjct: 61  IVTQPPSRRDRGRKLMPSPVAQYALDKGFSSDLILTPERAGEHAVRVYEEYFYNVGHQVY 120

Query: 121 -----------DVFLSTLKALQPELCITAAYGNILPTKFLNIPALGTVNIHPSLLPLYRG 180
                      D FLSTLKALQPELCITAAYGNILPT+FLNIPALGTVNIHPSLLPLYRG
Sbjct: 121 FFHRRTLYLYFDTFLSTLKALQPELCITAAYGNILPTEFLNIPALGTVNIHPSLLPLYRG 180

Query: 181 AAPVQRALQDGVKETGVSLAFTVRALDAGPVIAYKKFEVDEHIKAPDLLALLFLEGGAFS 240
           AAPVQRALQDGVKETGVSLAFTVRALDAGPVIA +KFEVDEHIKAPDLLALLFLEG    
Sbjct: 181 AAPVQRALQDGVKETGVSLAFTVRALDAGPVIASEKFEVDEHIKAPDLLALLFLEG---- 240

Query: 241 VCHELPLILMLSLSSKLLIRELPSILDGSAEKKAQPQDESKATKAPKIAADEAWLSFDEE 300
                         SKLLIRELPSILDGSAEKKAQPQDESKATKAPKIA DEAWLSFD+E
Sbjct: 241 --------------SKLLIRELPSILDGSAEKKAQPQDESKATKAPKIAPDEAWLSFDQE 300

Query: 301 AYVLHNKVRAFAGWPGTRAKVVVADEKSGHDDILEFKVITTRVCINCSSQETQADEIRFV 360
           AYVLHNKVRAFAGWPGTRAK+V+ DEKSG DDILEFK+ITTR+ INCSSQETQADEIRFV
Sbjct: 301 AYVLHNKVRAFAGWPGTRAKIVIVDEKSGRDDILEFKIITTRLNINCSSQETQADEIRFV 360

Query: 361 KDALVFPCGGRTALEVLEVQLPGKKVVSASAFWNGMRGKKLKKLDESKHFSHI 385
           KDALVFPCGG T LEVLEVQLPGKKVV+ASAFWNGM+GKKLKK D SKHF H+
Sbjct: 361 KDALVFPCGGTTPLEVLEVQLPGKKVVNASAFWNGMQGKKLKKFDASKHFLHV 395

[Close]

BLAST of Lsi05G002900 vs. NCBI nr
Match: gi|778679774|ref|XP_011651198.1| (PREDICTED: mitochondrial 10-formyltetrahydrofolate dehydrogenase isoform X2 [Cucumis sativus])

HSP 1 Score: 527.7 bits (1358), Expect = 1.7e-146
Identity = 268/311 (86.17%), Postives = 282/311 (90.68%), Query Frame = 1


Query: 76  MPSPVAQYALDKGFSSDLILTPEKAGEDVFLSTLKALQPELCITAAYGNILPTKFLNIPA 135
           MPSPVAQYALDKGFSSDLILTPEKAGED+FLSTLK L+PELCITAAYGNILPTKFLNIPA
Sbjct: 1   MPSPVAQYALDKGFSSDLILTPEKAGEDMFLSTLKVLEPELCITAAYGNILPTKFLNIPA 60

Query: 136 LGTVNIHPSLLPLYRGAAPVQRALQDGVKETGVSLAFTVRALDAGPVIAYKKFEVDEHIK 195
           LGTVNIHPSLLPLYRGAAPVQRALQDGVKETGVSLAFTVRALDAGP+IA +KFEV+EHIK
Sbjct: 61  LGTVNIHPSLLPLYRGAAPVQRALQDGVKETGVSLAFTVRALDAGPIIASEKFEVNEHIK 120

Query: 196 APDLLALLFLEGGAFSVCHELPLILMLSLSSKLLIRELPSILDGSAEKKAQPQDESKATK 255
           APDLLALLFLEG                  SKLLIRELPSILDGSAEKKAQPQDESKATK
Sbjct: 121 APDLLALLFLEG------------------SKLLIRELPSILDGSAEKKAQPQDESKATK 180

Query: 256 APKIAADEAWLSFDEEAYVLHNKVRAFAGWPGTRAKVVVADEKSGHDDILEFKVITTRVC 315
           APKIA DEAWLSFD+EAYVLHNKVRAFAGWPGTRAK+VV DEKSGHDDILEFK+ITTR+ 
Sbjct: 181 APKIAPDEAWLSFDQEAYVLHNKVRAFAGWPGTRAKIVVVDEKSGHDDILEFKIITTRLN 240

Query: 316 INCSSQETQADEIRFVKDALVFPCGGRTALEVLEVQLPGKKVVSASAFWNGMRGKKLKKL 375
           +NCSSQETQADEIRFVKDALVFPCGG T+LEVLEVQLPGKKV+SASAFWNGM+GKKLKK 
Sbjct: 241 VNCSSQETQADEIRFVKDALVFPCGGHTSLEVLEVQLPGKKVISASAFWNGMQGKKLKKF 293

Query: 376 DESKHFSHISS 387
           D SKHF  + S
Sbjct: 301 DASKHFLRVLS 293

[Close]

BLAST of Lsi05G002900 vs. NCBI nr
Match: gi|645246398|ref|XP_008229336.1| (PREDICTED: mitochondrial 10-formyltetrahydrofolate dehydrogenase [Prunus mume])

HSP 1 Score: 522.3 bits (1344), Expect = 7.1e-145
Identity = 276/393 (70.23%), Postives = 312/393 (79.39%), Query Frame = 1


Query: 1   MASSLMFRRFCCLQSPASPSS--------VFSKKKPLVFLGSPQVSTAVLDALLNVSSAS 60
           M SSL+FRRF C  +  S SS          S KKPLVFLGSPQVS  VLDALLN S+A 
Sbjct: 1   MNSSLVFRRFWCFNAATSSSSSSASSTLCFASNKKPLVFLGSPQVSATVLDALLNASTAP 60

Query: 61  DAAFEVAAIVTQPPSRRDRGRKMMPSPVAQYALDKGFSSDLILTPEKAGEDVFLSTLKAL 120
           D+ FEVAAIVTQPPSR+ RG+K+MPSP+AQ+ALD+GF S+LI TPE+AGED FLS L+ L
Sbjct: 61  DSLFEVAAIVTQPPSRKSRGKKLMPSPLAQHALDRGFPSNLIFTPERAGEDAFLSNLRDL 120

Query: 121 QPELCITAAYGNILPTKFLNIPALGTVNIHPSLLPLYRGAAPVQRALQDGVKETGVSLAF 180
           QPELCITAAYGNILP+KFLNIP  GTVNIHPSLLPLYRGAAPVQRALQDGVKETGVSLAF
Sbjct: 121 QPELCITAAYGNILPSKFLNIPTSGTVNIHPSLLPLYRGAAPVQRALQDGVKETGVSLAF 180

Query: 181 TVRALDAGPVIAYKKFEVDEHIKAPDLLALLFLEGGAFSVCHELPLILMLSLSSKLLIRE 240
           TVRALDAGPVIA K+ E+++ IKAP+LL LLF EG                  SKLLIRE
Sbjct: 181 TVRALDAGPVIARKRMEIEDQIKAPELLDLLFYEG------------------SKLLIRE 240

Query: 241 LPSILDGSAEKKAQPQDESKATKAPKIAADEAWLSFDEEAYVLHNKVRAFAGWPGTRAKV 300
           LPSI DGSA+ KAQPQD+ KAT APKIA++E+WLSFDEEA VLHNKVRAFAGWPGTRAKV
Sbjct: 241 LPSIFDGSAKVKAQPQDDFKATLAPKIASEESWLSFDEEAPVLHNKVRAFAGWPGTRAKV 300

Query: 301 VVADEKSGHDDILEFKVITTRVCINCSSQETQADEIRFVKDALVFPCGGRTALEVLEVQL 360
           V+ D KSG D I E K+ITT+VC   + Q  QADEI F+K ALVFPCGG TALEVLE+QL
Sbjct: 301 VIVDNKSGQDKITELKIITTKVCSRSNIQVNQADEITFIKPALVFPCGGGTALEVLEIQL 360

Query: 361 PGKKVVSASAFWNGMRGKKLKKLDESKHFSHIS 386
           PGKKV+SA+AFWNG+RG+KLK L  +    H+S
Sbjct: 361 PGKKVMSAAAFWNGVRGQKLKILSAAYVNDHLS 375

The following BLAST results are available for this feature:

BLAST of Lsi05G002900 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FMT_BACLD	4.7e-40	33.81	Methionyl-tRNA formyltransferase OS=Bacillus licheniformis (strain ATCC 14580 / ...	[more]
FMT_STACT	5.2e-39	31.52	Methionyl-tRNA formyltransferase OS=Staphylococcus carnosus (strain TM300) GN=fm...	[more]
FMT_KOSOT	2.2e-37	30.35	Methionyl-tRNA formyltransferase OS=Kosmotoga olearia (strain TBF 19.5.1) GN=fmt...	[more]
FMT_MOOTA	3.8e-37	33.14	Methionyl-tRNA formyltransferase OS=Moorella thermoacetica (strain ATCC 39073) G...	[more]
FMT_BACP2	6.4e-37	32.77	Methionyl-tRNA formyltransferase OS=Bacillus pumilus (strain SAFR-032) GN=fmt PE...	[more]

BLAST of Lsi05G002900 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A067F728_CITSI	7.9e-143	71.84	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g048078mg PE=3 S...	[more]
D7TSU1_VITVI	3.0e-142	70.94	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g01830 PE=3 SV=...	[more]
B9SPZ8_RICCO	7.4e-141	70.90	Methionyl-tRNA formyltransferase, putative OS=Ricinus communis GN=RCOM_0467230 P...	[more]
A0A0D2N7B6_GOSRA	3.7e-140	70.65	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G085900 PE=3 SV=1	[more]
D7KSH9_ARALL	6.3e-140	69.97	Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA...	[more]

BLAST of Lsi05G002900 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G66520.1	2.7e-142	68.90	formyltransferase, putative	[more]
AT5G47435.2	3.3e-07	35.23	formyltetrahydrofolate deformylase, putative	[more]
AT4G17360.1	2.1e-06	32.95	Formyl transferase	[more]

BLAST of Lsi05G002900 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659114520\|ref\|XP_008457092.1\|	8.6e-183	86.98	PREDICTED: cytosolic 10-formyltetrahydrofolate dehydrogenase isoform X2 [Cucumis...	[more]
gi\|449445959\|ref\|XP_004140739.1\|	1.9e-182	86.01	PREDICTED: mitochondrial 10-formyltetrahydrofolate dehydrogenase isoform X1 [Cuc...	[more]
gi\|659114518\|ref\|XP_008457091.1\|	3.7e-178	80.87	PREDICTED: cytosolic 10-formyltetrahydrofolate dehydrogenase isoform X1 [Cucumis...	[more]
gi\|778679774\|ref\|XP_011651198.1\|	1.7e-146	86.17	PREDICTED: mitochondrial 10-formyltetrahydrofolate dehydrogenase isoform X2 [Cuc...	[more]
gi\|645246398\|ref\|XP_008229336.1\|	7.1e-145	70.23	PREDICTED: mitochondrial 10-formyltetrahydrofolate dehydrogenase [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003824	catalytic activity
GO:0004479	methionyl-tRNA formyltransferase activity
GO:0016742	hydroxymethyl-, formyl- and related transferase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0071951	conversion of methionyl-tRNA to N-formyl-methionyl-tRNA
GO:0009058	biosynthetic process

Vocabulary: **INTERPRO**
Term	Definition
IPR011034	Formyl_transferase-like_C_sf
IPR005794	Fmt
IPR005793	Formyl_trans_C
IPR002376	Formyl_transf_N

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071951	conversion of methionyl-tRNA to N-formyl-methionyl-tRNA
biological_process	GO:0006555	methionine metabolic process
biological_process	GO:0046653	tetrahydrofolate metabolic process
biological_process	GO:0006413	translational initiation
biological_process	GO:0009058	biosynthetic process
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004479	methionyl-tRNA formyltransferase activity
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0016742	hydroxymethyl-, formyl- and related transferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G002900.1	Lsi05G002900.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002376	Formyl transferase, N-terminal	GENE3D	G3DSA:3.40.50.170		coord: 29..209 score: 8.0
IPR002376	Formyl transferase, N-terminal	PFAM	PF00551	Formyl_trans_N	coord: 30..193 score: 1.1
IPR002376	Formyl transferase, N-terminal	unknown	SSF53328	Formyltransferase	coord: 28..207 score: 4.97
IPR005793	Formyl transferase, C-terminal	GENE3D	G3DSA:3.10.25.10		coord: 262..374 score: 9.8
IPR005793	Formyl transferase, C-terminal	PFAM	PF02911	Formyl_trans_C	coord: 258..367 score: 2.0
IPR005794	Methionyl-tRNA formyltransferase	HAMAP	MF_00182	Formyl_trans	coord: 27..370 score: 26
IPR011034	Formyl transferase, C-terminal-like	unknown	SSF50486	FMT C-terminal domain-like	coord: 261..368 score: 7.06
None	No IPR available	PANTHER	PTHR11138	METHIONYL-TRNA FORMYLTRANSFERASE	coord: 6..207 score: 1.2E-146coord: 226..375 score: 1.2E
None	No IPR available	PANTHER	PTHR11138:SF3	TRANSFERASE, PUTATIVE-RELATED	coord: 6..207 score: 1.2E-146coord: 226..375 score: 1.2E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G002900	Csa3G185160	Cucumber (Chinese Long) v2	culsiB211
Lsi05G002900	CSPI03G17520	Wild cucumber (PI 183967)	cpilsiB209
Lsi05G002900	Cucsa.108370	Cucumber (Gy14) v1	cgylsiB144
Lsi05G002900	CmaCh01G003480	Cucurbita maxima (Rimu)	cmalsiB440
Lsi05G002900	CmoCh01G003660	Cucurbita moschata (Rifu)	cmolsiB430
Lsi05G002900	Cla013159	Watermelon (97103) v1	lsiwmB361
Lsi05G002900	MELO3C020307	Melon (DHL92) v3.5.1	lsimeB368
Lsi05G002900	ClCG05G010820	Watermelon (Charleston Gray)	lsiwcgB332
Lsi05G002900	MELO3C020307.2	Melon (DHL92) v3.6.1	lsimedB384
Lsi05G002900	Cla97C05G093130	Watermelon (97103) v2	lsiwmbB329
Lsi05G002900	Bhi01G001335	Wax gourd	lsiwgoB431
Lsi05G002900	Cp4.1LG02g16730	Cucurbita pepo (Zucchini)	cpelsiB470
Lsi05G002900	CsGy3G017550	Cucumber (Gy14) v2	cgyblsiB198
Lsi05G002900	Carg07438	Silver-seed gourd	carlsiB700
Lsi05G002900	CsaV3_3G017690	Cucumber (Chinese Long) v3	cuclsiB230

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G002900	Cucumber (Gy14) v1	cgylsiB322
Lsi05G002900	Cucurbita maxima (Rimu)	cmalsiB249
Lsi05G002900	Cucurbita moschata (Rifu)	cmolsiB237
Lsi05G002900	Cucurbita pepo (Zucchini)	cpelsiB511
Lsi05G002900	Cucumber (Gy14) v2	cgyblsiB199
Lsi05G002900	Silver-seed gourd	carlsiB158
Lsi05G002900	Cucumber (Chinese Long) v3	cuclsiB231