Lsi05G002820 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G002820
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_8
Location	chr05 : 3680956 .. 3683646 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTAGAAACAAAATTTGTAATTTAAGCTTATTTTTATTTTCAAATAGATCAACGTATCAAACTCTACAGCTATTCGACTATTATTGTTACAGATTCTATCATTTCGGAGCTATGGCTCTCAATCTCCATTGTTACCATTCATCAGCTCGCTTCCTTTCTCTCCATCCAAAAGTTCAGGTTCTTCCCCCTGATCGTCTGAATCGCACTTTGAAACTGATTTCAAATTCGCCCAAATTCCTCAGAATTCGAAGCTCCGCGGACTCGAACAACCAATTGACGCTTAGAACTTGCAGGAATTGCAAGGCGCAATTCGACCCCTCCCTCAATCACCCACGATCTTGTCGATTTCACACTGCACATTTTGGAGGTAATGCCCTAAGTTATTTGTAATTTTTCCAATTTCGTAGCCATTTTGCGTTTCTGTTTGTACAATCTAAATGTGTTTGGGGCTTTAGTTGCTGCTCGGCTCTTGGTTTATCTATTATTTGTAACCCCTGTTTAGTTAGTTGTAAACAAGGTGCTGTTTGAATTCATGGAACTGGAAATTGAAGGTTCATACTATCGGTTTTTACTTCAAATACTTGCAGATATCTATTCTTGATGTGAACATACTACACATGTGTTGTGGTAGGTCTCTGTTGCATGATATACAAACATCTAATGATCAGAGTAAAATAGCAGTATAATGTAGGTATGAAAGTTTAGCATGTTAGATAACTATTTAGGCTCCATTTGATAACAATTTTATTTTCAGTTGTATGTTTTTTAAATTTATGCTTGCTCGCTTCCAATTTTTTAGCTATGATTTTCTCCTTTCTTAAAGAAACACTTGAGTTTCTTGTCAATTCTGAAAACAAAAACTACTTTTTTTTAGTTTTTAAAACATGATTTGGTTTCTGAAAACATTAGAATAAAACTAATTACAAAACATAGAAACTCAAGGGTGAAAGTAGTGTTTATAAGCTTAATTTTCAAATAACATGAAACTAAATGGTTATAAAATGGGCCTTAGCATTGTGTTTGATTTTCTTTGGCTTTCTTTAGTTTCTTTTGGGACCTCTAGTTTACTTTTTATTTGTTTTTTTTCTTTTTCTATCTACCTTGTGGAGTTTGTATGCATGAGCACTAGTCTCTTTTTATTTCATCAATGAAAAGTTTCATTTCTTGTACAATAAAAAAAATATACTTTCCCATGAGTTTCTTTGTTTTGTTATCTACTTTCTAAGAATGTTTTCCAAATCCAAGTCAAACTTTGGAAACCAAAAAAGTTGTTTTCCGAGACTTGTTTTTATCTTGTAATTTGACTAAGAATTAAAACATTATTTTTAAGAGAGATGAAAACCATAGTAAAGAAGATGTGAGGAAACAAACATGATTTTCAAAAACAGAAAACAAAAAAATGAAGGTTTGGTAATCATTTGGTTTTTTATTTTTTGGTTTTGAAAATTAAGCCTATTTCTTCTCAATTTCTTACAATAGTTTGCATCTTTTTTAAATAAGAGAGTTGAGTTCTTAGCCAAATTCCAAAAACAAAAACAAGTTTTTAAAAACTATTTGTTTTAGTTTTTACAACTTAGCTTGGTTTTTAAAAACATTCGCAAAAAGTAGACAATAAAGCAAAAAAAATTTAGAGGTGGAATGAGTATTTATAGGGCTTAATTTTAAAAACTAAAATTAACGGTTACCAAATGGGGCTAAAATCACTATCAAACGTGGTCTTAAAGTTCAGGGATATCAAATTTATCTGTCTATTTACTATTGATGATTTTCTTGAACTTTGCAAACAGTGACCATCTATTTTTCCCTTTCGGTTGAATCTCCTTAAACAATAGCTTCCAGCACTACCTTTAAATCTTAGCTATCAGTTACTAAAAAACCAGGAGCATATGGTATTAATGCCTTCACAGGATTAAATGTATTTTATGAGTGTGATTATTGGAGGATTAAACGCCTAGTACTGAAAAGTCTTTCTTTGATGCTTGTCTACACACCCGCAAGTTGAAATGTTAAACATTGTGCATACTTCAAACATTATGCATAACCAAATACATGGCGATTAATCTCGATCGAAAGAGGCAAGGTTCGAGATTGACTGTGAAAACTCGTAAATGTTTTGTTGCTCTTTAGTACCTGAAATGTTTTTGGATACTTTGAAGATTGAGAACAGACTGCAATTCAGTTTGCTACTTCAGATCATTCTTGACTTTTTTTTAAAGGTCCAAGTTCTAACTTGAGTCACAAGTCATTATTTTGCTGCTCAACACTGTAATCCATTCCTTTTTCTTATAGGTGAAACAAAGAGAAAGTTTGAAAGTGTACACTCAGGAGGATCAATGGACACTCCAGACTCTGGCAAAGTTTTTCAATACTGGCATTGCTGTGGGTCTGAGGATCCTTTCGATCCGGGATGTACTGCTTCTCTGCACTCGTCCTACGACGATGATTAATATTGCAAATCGACTACCTTTTCTCCAGGTTCTCTTCATTATTGCAAGACTCCTGATCTTTTTTTTCTCCTTCCTGAAGTCCTGTGTACAAGTGTACATATTCATATCCTATCTTAATTGTTTACTTCTTGAACGAAAATCCATCTTACATTGTTGCCTCTTTATATGGGAATGCCAACAATATTATTATAGTTAATTGTGTTTTAAATATGGATCAATGGAAAATTTGTCTGAGATTATAATC

mRNA sequence

TTTAGAAACAAAATTTGTAATTTAAGCTTATTTTTATTTTCAAATAGATCAACGTATCAAACTCTACAGCTATTCGACTATTATTGTTACAGATTCTATCATTTCGGAGCTATGGCTCTCAATCTCCATTGTTACCATTCATCAGCTCGCTTCCTTTCTCTCCATCCAAAAGTTCAGGTTCTTCCCCCTGATCGTCTGAATCGCACTTTGAAACTGATTTCAAATTCGCCCAAATTCCTCAGAATTCGAAGCTCCGCGGACTCGAACAACCAATTGACGCTTAGAACTTGCAGGAATTGCAAGGCGCAATTCGACCCCTCCCTCAATCACCCACGATCTTGTCGATTTCACACTGCACATTTTGGAGGTGAAACAAAGAGAAAGTTTGAAAGTGTACACTCAGGAGGATCAATGGACACTCCAGACTCTGGCAAAGTTTTTCAATACTGGCATTGCTGTGGGTCTGAGGATCCTTTCGATCCGGGATGTACTGCTTCTCTGCACTCGTCCTACGACGATGATTAATATTGCAAATCGACTACCTTTTCTCCAGGTTCTCTTCATTATTGCAAGACTCCTGATCTTTTTTTTCTCCTTCCTGAAGTCCTGTGTACAAGTGTACATATTCATATCCTATCTTAATTGTTTACTTCTTGAACGAAAATCCATCTTACATTGTTGCCTCTTTATATGGGAATGCCAACAATATTATTATAGTTAATTGTGTTTTAAATATGGATCAATGGAAAATTTGTCTGAGATTATAATC

Coding sequence (CDS)

ATGGCTCTCAATCTCCATTGTTACCATTCATCAGCTCGCTTCCTTTCTCTCCATCCAAAAGTTCAGGTTCTTCCCCCTGATCGTCTGAATCGCACTTTGAAACTGATTTCAAATTCGCCCAAATTCCTCAGAATTCGAAGCTCCGCGGACTCGAACAACCAATTGACGCTTAGAACTTGCAGGAATTGCAAGGCGCAATTCGACCCCTCCCTCAATCACCCACGATCTTGTCGATTTCACACTGCACATTTTGGAGGTGAAACAAAGAGAAAGTTTGAAAGTGTACACTCAGGAGGATCAATGGACACTCCAGACTCTGGCAAAGTTTTTCAATACTGGCATTGCTGTGGGTCTGAGGATCCTTTCGATCCGGGATGTACTGCTTCTCTGCACTCGTCCTACGACGATGATTAA

Protein sequence

MALNLHCYHSSARFLSLHPKVQVLPPDRLNRTLKLISNSPKFLRIRSSADSNNQLTLRTCRNCKAQFDPSLNHPRSCRFHTAHFGGETKRKFESVHSGGSMDTPDSGKVFQYWHCCGSEDPFDPGCTASLHSSYDDD

Homology

[Close]

BLAST of Lsi05G002820 vs. TrEMBL
Match: A0A0A0L8V5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G185090 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 7.6e-64
Identity = 118/137 (86.13%), Postives = 123/137 (89.78%), Query Frame = 1


Query: 1   MALNLHCYHSSARFLSLHPKVQVLPPDRLNRTLKLISNSPKFLRIRSSADSNNQLTLRTC 60
           MA NLHCYHSSA F+SLH K  VL  D LNRT KL SNSPK L IR SA+SNNQLTLRTC
Sbjct: 1   MAPNLHCYHSSAPFISLHSKFLVLRSDALNRTSKLSSNSPKILTIRCSANSNNQLTLRTC 60

Query: 61  RNCKAQFDPSLNHPRSCRFHTAHFGGETKRKFESVHSGGSMDTPDSGKVFQYWHCCGSED 120
           RNCKAQFDPSLNHPR+CRFHT+HFGGETKRKFESVHSGG+MDTPDSGKVFQYWHCCGSED
Sbjct: 61  RNCKAQFDPSLNHPRACRFHTSHFGGETKRKFESVHSGGTMDTPDSGKVFQYWHCCGSED 120

Query: 121 PFDPGCTASLHSSYDDD 138
           PFDPGCTAS HSSYDDD
Sbjct: 121 PFDPGCTASPHSSYDDD 137

[Close]

BLAST of Lsi05G002820 vs. TrEMBL
Match: W9S912_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_027126 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 5.6e-43
Identity = 79/96 (82.29%), Postives = 87/96 (90.62%), Query Frame = 1


Query: 41  KFLRIRSSADSNNQLTLRTCRNCKAQFDPSLNHPRSCRFHTAHFGGETKRKFESVHSGGS 100
           KFL +R S D   + TLRTC+NCK QFDPSLNHPR+CRFHTAHFGGETKRKFESVH+GG+
Sbjct: 24  KFLPLRCSVDPIKKATLRTCKNCKTQFDPSLNHPRACRFHTAHFGGETKRKFESVHTGGT 83

Query: 101 MDTPDSGKVFQYWHCCGSEDPFDPGCTASLHSSYDD 137
           MDTPDSG+VFQYWHCCGSEDPFDPGCTA+ HSSYDD
Sbjct: 84  MDTPDSGRVFQYWHCCGSEDPFDPGCTAAPHSSYDD 119

[Close]

BLAST of Lsi05G002820 vs. TrEMBL
Match: V4S8S6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013088mg PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.3e-42
Identity = 85/125 (68.00%), Postives = 98/125 (78.40%), Query Frame = 1


Query: 12  ARFLSLHPKVQVLPPDRLNRTLKLISNSPKFLRIRSSADSNNQLTLRTCRNCKAQFDPSL 71
           A F SLH         RL R + +   SPK   I+ SA +NN  +LRTC+NCK Q+DP L
Sbjct: 11  ASFPSLHRISPTSSQTRL-RPVTIFKCSPKLTPIQCSASANNGSSLRTCKNCKTQYDPLL 70

Query: 72  NHPRSCRFHTAHFGGETKRKFESVHSGGSMDTPDSGKVFQYWHCCGSEDPFDPGCTASLH 131
           NHPR+CRFHTAHFGGETKRKFESV++GG+MDTPDSG+VFQYWHCCGSEDPFDPGCTA+ H
Sbjct: 71  NHPRACRFHTAHFGGETKRKFESVYTGGTMDTPDSGEVFQYWHCCGSEDPFDPGCTAAPH 130

Query: 132 SSYDD 137
           SSYDD
Sbjct: 131 SSYDD 134

[Close]

BLAST of Lsi05G002820 vs. TrEMBL
Match: A0A067FIY9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032756mg PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.3e-42
Identity = 85/125 (68.00%), Postives = 98/125 (78.40%), Query Frame = 1


Query: 12  ARFLSLHPKVQVLPPDRLNRTLKLISNSPKFLRIRSSADSNNQLTLRTCRNCKAQFDPSL 71
           A F SLH         RL R + +   SPK   I+ SA +NN  +LRTC+NCK Q+DP L
Sbjct: 11  ASFPSLHRISPTSSQTRL-RPVTIFKCSPKLTPIQCSASANNGSSLRTCKNCKTQYDPLL 70

Query: 72  NHPRSCRFHTAHFGGETKRKFESVHSGGSMDTPDSGKVFQYWHCCGSEDPFDPGCTASLH 131
           NHPR+CRFHTAHFGGETKRKFESV++GG+MDTPDSG+VFQYWHCCGSEDPFDPGCTA+ H
Sbjct: 71  NHPRACRFHTAHFGGETKRKFESVYTGGTMDTPDSGEVFQYWHCCGSEDPFDPGCTAAPH 130

Query: 132 SSYDD 137
           SSYDD
Sbjct: 131 SSYDD 134

[Close]

BLAST of Lsi05G002820 vs. TrEMBL
Match: M5WRC7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013468mg PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 6.2e-42
Identity = 87/136 (63.97%), Postives = 102/136 (75.00%), Query Frame = 1


Query: 1   MALNLHCYHSSARFLSLHPKVQVLPPDRLNRTLKLISNSPKFLRIRSSADSNNQLTLRTC 60
           MAL L   HS +  LSLH K +         TL+L +        R SA  +N++ LRTC
Sbjct: 1   MALALGFAHSPSPLLSLHQKPK--------HTLRLAA-------FRCSATPSNEIILRTC 60

Query: 61  RNCKAQFDPSLNHPRSCRFHTAHFGGETKRKFESVHSGGSMDTPDSGKVFQYWHCCGSED 120
           +NCK QFDPS+N+PR+CRFHTAHFGGETKRKFESVH+GG+M+TPDSGKV QYWHCCGSED
Sbjct: 61  KNCKTQFDPSINNPRACRFHTAHFGGETKRKFESVHTGGTMNTPDSGKVVQYWHCCGSED 120

Query: 121 PFDPGCTASLHSSYDD 137
           PFDPGCTA+ HSSYDD
Sbjct: 121 PFDPGCTAAPHSSYDD 121

[Close]

BLAST of Lsi05G002820 vs. TAIR10
Match: AT5G38060.1 (AT5G38060.1 unknown protein)

HSP 1 Score: 162.2 bits (409), Expect = 2.3e-40
Identity = 71/99 (71.72%), Postives = 85/99 (85.86%), Query Frame = 1


Query: 38  NSPKFLRIRSSADSNNQLTLRTCRNCKAQFDPSLNHPRSCRFHTAHFGGETKRKFESVHS 97
           NS +F    +++ S+   TLRTC+NCK QFDP LN+PR+CRFHTAHFGGETKRKFESV++
Sbjct: 36  NSRQFFSQCTASSSDGPKTLRTCKNCKTQFDPLLNNPRACRFHTAHFGGETKRKFESVYT 95

Query: 98  GGSMDTPDSGKVFQYWHCCGSEDPFDPGCTASLHSSYDD 137
           GG+MDTP+SGKV QYWHCCGSEDPFD GCTAS H++YDD
Sbjct: 96  GGTMDTPNSGKVLQYWHCCGSEDPFDSGCTASPHTTYDD 134

[Close]

BLAST of Lsi05G002820 vs. TAIR10
Match: AT1G65000.1 (AT1G65000.1 unknown protein)

HSP 1 Score: 53.9 bits (128), Expect = 9.0e-08
Identity = 28/83 (33.73%), Postives = 40/83 (48.19%), Query Frame = 1


Query: 58  RTCRNCKAQFDPSLNHPRSCRFHTAHF----GGETKRKFESVHSGGSMDTPDSGKVFQYW 117
           + C+ CK  +    N   SCRFH + F      + KR +E       +   D     +++
Sbjct: 8   KLCQRCKQSYTDLSNETSSCRFHPSFFVCRRHDDQKRYYE-------LKPDDPPYAAKFY 67

Query: 118 HCCGSEDPFDPGCTASLHSSYDD 137
            CCG+EDP  PGC  + H SYDD
Sbjct: 68  DCCGAEDPNAPGCVTNPHISYDD 83

[Close]

BLAST of Lsi05G002820 vs. NCBI nr
Match: gi|449445965|ref|XP_004140742.1| (PREDICTED: uncharacterized protein LOC101208221 [Cucumis sativus])

HSP 1 Score: 251.1 bits (640), Expect = 1.1e-63
Identity = 118/137 (86.13%), Postives = 123/137 (89.78%), Query Frame = 1


Query: 1   MALNLHCYHSSARFLSLHPKVQVLPPDRLNRTLKLISNSPKFLRIRSSADSNNQLTLRTC 60
           MA NLHCYHSSA F+SLH K  VL  D LNRT KL SNSPK L IR SA+SNNQLTLRTC
Sbjct: 1   MAPNLHCYHSSAPFISLHSKFLVLRSDALNRTSKLSSNSPKILTIRCSANSNNQLTLRTC 60

Query: 61  RNCKAQFDPSLNHPRSCRFHTAHFGGETKRKFESVHSGGSMDTPDSGKVFQYWHCCGSED 120
           RNCKAQFDPSLNHPR+CRFHT+HFGGETKRKFESVHSGG+MDTPDSGKVFQYWHCCGSED
Sbjct: 61  RNCKAQFDPSLNHPRACRFHTSHFGGETKRKFESVHSGGTMDTPDSGKVFQYWHCCGSED 120

Query: 121 PFDPGCTASLHSSYDDD 138
           PFDPGCTAS HSSYDDD
Sbjct: 121 PFDPGCTASPHSSYDDD 137

[Close]

BLAST of Lsi05G002820 vs. NCBI nr
Match: gi|659114539|ref|XP_008457102.1| (PREDICTED: uncharacterized protein LOC103496857 [Cucumis melo])

HSP 1 Score: 228.8 bits (582), Expect = 5.8e-57
Identity = 110/137 (80.29%), Postives = 115/137 (83.94%), Query Frame = 1


Query: 1   MALNLHCYHSSARFLSLHPKVQVLPPDRLNRTLKLISNSPKFLRIRSSADSNNQLTLRTC 60
           MA NLHCYHSS  F+SLH    VL       T K  SNS KFL IR SA+SNNQLTLRTC
Sbjct: 1   MAPNLHCYHSSPPFISLHSYPLVLRSHAPYPTSKHCSNSLKFLSIRCSANSNNQLTLRTC 60

Query: 61  RNCKAQFDPSLNHPRSCRFHTAHFGGETKRKFESVHSGGSMDTPDSGKVFQYWHCCGSED 120
           RNCK+QFDPSLNHPR+CRFHTAHFGGETKRKFESVH GG+MDTPDSGKVFQYWHCCGSED
Sbjct: 61  RNCKSQFDPSLNHPRACRFHTAHFGGETKRKFESVHLGGTMDTPDSGKVFQYWHCCGSED 120

Query: 121 PFDPGCTASLHSSYDDD 138
           PFDPGCTAS HSSYDDD
Sbjct: 121 PFDPGCTASPHSSYDDD 137

[Close]

BLAST of Lsi05G002820 vs. NCBI nr
Match: gi|703146957|ref|XP_010108931.1| (hypothetical protein L484_027126 [Morus notabilis])

HSP 1 Score: 181.8 bits (460), Expect = 8.1e-43
Identity = 79/96 (82.29%), Postives = 87/96 (90.62%), Query Frame = 1


Query: 41  KFLRIRSSADSNNQLTLRTCRNCKAQFDPSLNHPRSCRFHTAHFGGETKRKFESVHSGGS 100
           KFL +R S D   + TLRTC+NCK QFDPSLNHPR+CRFHTAHFGGETKRKFESVH+GG+
Sbjct: 24  KFLPLRCSVDPIKKATLRTCKNCKTQFDPSLNHPRACRFHTAHFGGETKRKFESVHTGGT 83

Query: 101 MDTPDSGKVFQYWHCCGSEDPFDPGCTASLHSSYDD 137
           MDTPDSG+VFQYWHCCGSEDPFDPGCTA+ HSSYDD
Sbjct: 84  MDTPDSGRVFQYWHCCGSEDPFDPGCTAAPHSSYDD 119

[Close]

BLAST of Lsi05G002820 vs. NCBI nr
Match: gi|568857221|ref|XP_006482165.1| (PREDICTED: uncharacterized protein LOC102614560 [Citrus sinensis])

HSP 1 Score: 180.6 bits (457), Expect = 1.8e-42
Identity = 85/125 (68.00%), Postives = 98/125 (78.40%), Query Frame = 1


Query: 12  ARFLSLHPKVQVLPPDRLNRTLKLISNSPKFLRIRSSADSNNQLTLRTCRNCKAQFDPSL 71
           A F SLH         RL R + +   SPK   I+ SA +NN  +LRTC+NCK Q+DP L
Sbjct: 11  ASFPSLHRISPTSSQTRL-RPVTIFKCSPKLTPIQCSASANNGSSLRTCKNCKTQYDPLL 70

Query: 72  NHPRSCRFHTAHFGGETKRKFESVHSGGSMDTPDSGKVFQYWHCCGSEDPFDPGCTASLH 131
           NHPR+CRFHTAHFGGETKRKFESV++GG+MDTPDSG+VFQYWHCCGSEDPFDPGCTA+ H
Sbjct: 71  NHPRACRFHTAHFGGETKRKFESVYTGGTMDTPDSGEVFQYWHCCGSEDPFDPGCTAAPH 130

Query: 132 SSYDD 137
           SSYDD
Sbjct: 131 SSYDD 134

[Close]

BLAST of Lsi05G002820 vs. NCBI nr
Match: gi|567876157|ref|XP_006430668.1| (hypothetical protein CICLE_v10013088mg [Citrus clementina])

HSP 1 Score: 180.6 bits (457), Expect = 1.8e-42
Identity = 85/125 (68.00%), Postives = 98/125 (78.40%), Query Frame = 1


Query: 12  ARFLSLHPKVQVLPPDRLNRTLKLISNSPKFLRIRSSADSNNQLTLRTCRNCKAQFDPSL 71
           A F SLH         RL R + +   SPK   I+ SA +NN  +LRTC+NCK Q+DP L
Sbjct: 11  ASFPSLHRISPTSSQTRL-RPVTIFKCSPKLTPIQCSASANNGSSLRTCKNCKTQYDPLL 70

Query: 72  NHPRSCRFHTAHFGGETKRKFESVHSGGSMDTPDSGKVFQYWHCCGSEDPFDPGCTASLH 131
           NHPR+CRFHTAHFGGETKRKFESV++GG+MDTPDSG+VFQYWHCCGSEDPFDPGCTA+ H
Sbjct: 71  NHPRACRFHTAHFGGETKRKFESVYTGGTMDTPDSGEVFQYWHCCGSEDPFDPGCTAAPH 130

Query: 132 SSYDD 137
           SSYDD
Sbjct: 131 SSYDD 134

The following BLAST results are available for this feature:

BLAST of Lsi05G002820 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi05G002820 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8V5_CUCSA	7.6e-64	86.13	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G185090 PE=4 SV=1	[more]
W9S912_9ROSA	5.6e-43	82.29	Uncharacterized protein OS=Morus notabilis GN=L484_027126 PE=4 SV=1	[more]
V4S8S6_9ROSI	1.3e-42	68.00	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013088mg PE=4 SV=1	[more]
A0A067FIY9_CITSI	1.3e-42	68.00	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032756mg PE=4 SV=1	[more]
M5WRC7_PRUPE	6.2e-42	63.97	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013468mg PE=4 SV=1	[more]

BLAST of Lsi05G002820 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G38060.1	2.3e-40	71.72	unknown protein	[more]
AT1G65000.1	9.0e-08	33.73	unknown protein	[more]

BLAST of Lsi05G002820 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449445965\|ref\|XP_004140742.1\|	1.1e-63	86.13	PREDICTED: uncharacterized protein LOC101208221 [Cucumis sativus]	[more]
gi\|659114539\|ref\|XP_008457102.1\|	5.8e-57	80.29	PREDICTED: uncharacterized protein LOC103496857 [Cucumis melo]	[more]
gi\|703146957\|ref\|XP_010108931.1\|	8.1e-43	82.29	hypothetical protein L484_027126 [Morus notabilis]	[more]
gi\|568857221\|ref\|XP_006482165.1\|	1.8e-42	68.00	PREDICTED: uncharacterized protein LOC102614560 [Citrus sinensis]	[more]
gi\|567876157\|ref\|XP_006430668.1\|	1.8e-42	68.00	hypothetical protein CICLE_v10013088mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G002820.1	Lsi05G002820.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35106	FAMILY NOT NAMED	coord: 41..137 score: 1.8
None	No IPR available	PANTHER	PTHR35106:SF2	EXPRESSED PROTEIN	coord: 41..137 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G002820	CmaCh01G003450	Cucurbita maxima (Rimu)	cmalsiB440
Lsi05G002820	CmoCh01G003630	Cucurbita moschata (Rifu)	cmolsiB430
Lsi05G002820	Cla013152	Watermelon (97103) v1	lsiwmB361
Lsi05G002820	ClCG05G010760	Watermelon (Charleston Gray)	lsiwcgB332
Lsi05G002820	Cla97C05G093080	Watermelon (97103) v2	lsiwmbB329
Lsi05G002820	Bhi01G001329	Wax gourd	lsiwgoB431
Lsi05G002820	Cp4.1LG02g16770	Cucurbita pepo (Zucchini)	cpelsiB470
Lsi05G002820	Carg07437	Silver-seed gourd	carlsiB700

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G002820	Silver-seed gourd	carlsiB158
Lsi05G002820	Cucumber (Chinese Long) v3	cuclsiB230
Lsi05G002820	Cucumber (Gy14) v1	cgylsiB144
Lsi05G002820	Cucurbita maxima (Rimu)	cmalsiB249
Lsi05G002820	Cucurbita moschata (Rifu)	cmolsiB237
Lsi05G002820	Cucurbita pepo (Zucchini)	cpelsiB511
Lsi05G002820	Wild cucumber (PI 183967)	cpilsiB209
Lsi05G002820	Cucumber (Chinese Long) v2	culsiB211
Lsi05G002820	Melon (DHL92) v3.5.1	lsimeB368
Lsi05G002820	Cucumber (Gy14) v2	cgyblsiB198
Lsi05G002820	Melon (DHL92) v3.6.1	lsimedB384