Lsi05G002650 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G002650
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Transcription repressor KAN1
Location	chr05 : 3364907 .. 3366242 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATCAAGTATTGCTGTTTTTCTTTTCTCTCTCTTCTACTGTTCTTATTGTACTATATATTGAAAGTGTTGAGTTTCAAGAAAAAAAAATAAGGCAACGAGAAATTACGACACACACAAGATCTTCTTTTGATCACTTTTGATTGGTCTAAATTCTACTCTTCCTACTTAAAAAGTCATTCTAAACGAGTTCAGTAGCCAAAAGATTAAAGATGAGAGCACTTGTGATTTTATTTTCAACAAATGGAACAAGAATCCCAAAACTCCCGAGAATCAACTCGCGGGAGAAATGGTGCATTGTAGATCAAGTGTTTCTACGGTGATTTTTTGACTCAACAACCGCATATATATGTTGCTTTGATGTGGTTGAGATCATGGCACATCAAAGCAACGGATGTGGTCATTGAGCCAAAAAGCCATCCAAAGTGATCTGCAACGAACCATTTCGAGTGTGGTTCTCCCTTAACCGAAATCCCATAACCCTCGAGAATCCAACTCGAGGGAATGGTGCATTGTAGATCAAGTGCTTCTAAGGTGACTTTTTGGCTCAACAACTGCATCCGTTACCACATTAAAGCAATCGGATGCAGTCATTGACTCAAAAAGTCATCCAAGGAGGGGTTGATCTACAACGCACCATTCGGGTTTCGGGTTTCGGTTCCATTTGTCGAAGGGAGAAACTCACGTGGTTGTGGTTACATGGTATGGAAGGCTGAGATTCTACTCTGTTTCTTCATCCTCATTTCCTGTATCTCCAAAGGATCCACTAGAATTTTCTGGTTGAAGATTGTTCAACTTGAAGAAAATGTTTAAGAAATAAGAATTTGCTTTCCAATAATTATTTTCAAAGCTTGATTTTGCAGAGATGTTTGGCCACAAACAAACTCTAATGAAATGGATGTCATTAGACCAACTTTGTCTACACAACAAAAATCCATGCACCAAATTCAGGTACCACATTAAAATATTTTTGTATATTTATAAGCTTTTTCCCTAGAAAGAGCAATATAATGGAATGAAAATTGTGTTTAAAAGTATAAAATCAAACCTTGAATTTAATTAGAATGATTAAAAGCATGTTTCGGAGTACAATGTTGTATTATTTAAGGTTGAAATCAGTGAGAGAAGAGTATTAAGAAAAATGGAAGAGAATTTGAACAAACTATATATGACAGGAATGTGATTCAGGTGCAATGAAGAGATATAATTCAGAATGCAAGAAACCAAGCTTGGAGTTCAGATTAGGCAGAGCAGAGTGGGATGTGAAAGAAGACTAAATTTGGTCTCTCTTCAATCAAAAAGCTTTTTTTTTTTCTCTTTTTTTTTTTTTTTTTT

mRNA sequence

ATGCATCAAATTAAAGATGAGAGCACTTGTGATTTTATTTTCAACAAATGGAACAAGAATCCCAAAACTCCCGAGAATCAACTCGCGGGAGAAATGGTGCATTGTAGATCAAGTGTTTCTACGTCATTGACTCAAAAAGTCATCCAAGGAGGGGTTGATCTACAACGCACCATTCGGGTTTCGGGTTTCGGTTCCATTTGTCGAAGGGAGAAACTCACAGATGTTTGGCCACAAACAAACTCTAATGAAATGGATGTCATTAGACCAACTTTGTCTACACAACAAAAATCCATGCACCAAATTCAGGAATGTGATTCAGGTGCAATGAAGAGATATAATTCAGAATGCAAGAAACCAAGCTTGGAGTTCAGATTAGGCAGAGCAGAGTGGGATGTGAAAGAAGACTAAATTTGGTCTCTCTTCAATCAAAAAGCTTTTTTTTTTTCTCTTTTTTTTTTTTTTTTTT

Coding sequence (CDS)

ATGCATCAAATTAAAGATGAGAGCACTTGTGATTTTATTTTCAACAAATGGAACAAGAATCCCAAAACTCCCGAGAATCAACTCGCGGGAGAAATGGTGCATTGTAGATCAAGTGTTTCTACGTCATTGACTCAAAAAGTCATCCAAGGAGGGGTTGATCTACAACGCACCATTCGGGTTTCGGGTTTCGGTTCCATTTGTCGAAGGGAGAAACTCACAGATGTTTGGCCACAAACAAACTCTAATGAAATGGATGTCATTAGACCAACTTTGTCTACACAACAAAAATCCATGCACCAAATTCAGGAATGTGATTCAGGTGCAATGAAGAGATATAATTCAGAATGCAAGAAACCAAGCTTGGAGTTCAGATTAGGCAGAGCAGAGTGGGATGTGAAAGAAGACTAA

Protein sequence

MHQIKDESTCDFIFNKWNKNPKTPENQLAGEMVHCRSSVSTSLTQKVIQGGVDLQRTIRVSGFGSICRREKLTDVWPQTNSNEMDVIRPTLSTQQKSMHQIQECDSGAMKRYNSECKKPSLEFRLGRAEWDVKED

Homology

[Close]

BLAST of Lsi05G002650 vs. TrEMBL
Match: A0A0A0LBR3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G194380 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.0e-24
Identity = 58/64 (90.62%), Postives = 60/64 (93.75%), Query Frame = 1


Query: 74  DVWPQTNSNEMD--VIRPTLSTQQKSMHQIQECDSGAMKRYNSECKKPSLEFRLGRAEWD 133
           DVWPQTNSNEMD  V  PTLSTQQK+MHQIQECDSGAMKRYNSECKKPSLEFRLGRAEWD
Sbjct: 383 DVWPQTNSNEMDNNVNTPTLSTQQKTMHQIQECDSGAMKRYNSECKKPSLEFRLGRAEWD 442

Query: 134 VKED 136
           VK+D
Sbjct: 443 VKQD 446

[Close]

BLAST of Lsi05G002650 vs. TrEMBL
Match: B9SR80_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0111720 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.1e-09
Identity = 35/65 (53.85%), Postives = 44/65 (67.69%), Query Frame = 1


Query: 74  DVWPQTNSNEMDVIRP-TLSTQQKSMHQIQECDSGAMKRY---NSECKKPSLEFRLGRAE 133
           + WPQTNSN+ D IR  T+ +QQ+S H +QEC+S  MK Y   N +CK PSLEF LGR +
Sbjct: 16  EAWPQTNSNDPDGIREATVQSQQRSGHPVQECNSNRMKGYLGSNLDCKNPSLEFTLGRPD 75

Query: 134 WDVKE 135
           W   E
Sbjct: 76  WQGNE 80

[Close]

BLAST of Lsi05G002650 vs. TrEMBL
Match: U5FLN3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s02220g PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 6.8e-09
Identity = 34/66 (51.52%), Postives = 45/66 (68.18%), Query Frame = 1


Query: 74  DVWPQTNSNEMDVIRP-TLSTQQKSMHQIQECDSGAMKRY----NSECKKPSLEFRLGRA 133
           + WPQTNSN++D  R  T  +QQ+S HQ++EC+S  +K Y    N +CK PSLEF LGR 
Sbjct: 415 EAWPQTNSNDIDGHRQGTFQSQQRSGHQMEECNSTQLKSYLGSSNMDCKNPSLEFTLGRP 474

Query: 134 EWDVKE 135
           +W  KE
Sbjct: 475 DWQGKE 480

[Close]

BLAST of Lsi05G002650 vs. TrEMBL
Match: K7MPV6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_18G043000 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.6e-08
Identity = 39/98 (39.80%), Postives = 52/98 (53.06%), Query Frame = 1


Query: 42  SLTQKVIQGGVDLQRTIRVSGFGSICRREKLTDVWPQTNSNEMDVIRPTL--STQQKSMH 101
           SL+ + +Q  +D       SG  ++       + W Q NSN++D  RP +  S Q    H
Sbjct: 380 SLSDRPLQQDMDYS-----SGNNTLWSNSSSRETWQQNNSNDVDGFRPPIFQSQQISGGH 439

Query: 102 QIQECDSGAMKRY----NSECKKPSLEFRLGRAEWDVK 134
           QIQECDS  +K      N ECK PSLEF LGR +W+ K
Sbjct: 440 QIQECDSTQLKNSLSGSNLECKNPSLEFTLGRPDWNGK 472

[Close]

BLAST of Lsi05G002650 vs. TrEMBL
Match: G7J8N8_MEDTR (Transcription factor KAN2 OS=Medicago truncatula GN=MTR_3g064840 PE=4 SV=2)

HSP 1 Score: 63.9 bits (154), Expect = 1.7e-07
Identity = 40/97 (41.24%), Postives = 51/97 (52.58%), Query Frame = 1


Query: 43  LTQKVIQGGVDLQRTIRVSGFGSICRREKLTDVWPQTNSNEMDVIRPTLSTQQ--KSMHQ 102
           LT + IQ  +D   T  +    S  R     + WPQT+ N++D  RPT+   Q     HQ
Sbjct: 368 LTDRPIQQDMDYSSTNTLWSNSSSSR-----EPWPQTSPNDIDGFRPTIFQSQPISGGHQ 427

Query: 103 IQECDSGAMKRY----NSECKKPSLEFRLGRAEWDVK 134
           IQECDS  +K      N ECK PSLEF LG  +W+ K
Sbjct: 428 IQECDSNQLKNNLSGSNLECKNPSLEFTLGIPDWNGK 459

[Close]

BLAST of Lsi05G002650 vs. NCBI nr
Match: gi|449445939|ref|XP_004140729.1| (PREDICTED: transcription repressor KAN1-like isoform X1 [Cucumis sativus])

HSP 1 Score: 120.2 bits (300), Expect = 2.8e-24
Identity = 58/64 (90.62%), Postives = 60/64 (93.75%), Query Frame = 1


Query: 74  DVWPQTNSNEMD--VIRPTLSTQQKSMHQIQECDSGAMKRYNSECKKPSLEFRLGRAEWD 133
           DVWPQTNSNEMD  V  PTLSTQQK+MHQIQECDSGAMKRYNSECKKPSLEFRLGRAEWD
Sbjct: 383 DVWPQTNSNEMDNNVNTPTLSTQQKTMHQIQECDSGAMKRYNSECKKPSLEFRLGRAEWD 442

Query: 134 VKED 136
           VK+D
Sbjct: 443 VKQD 446

[Close]

BLAST of Lsi05G002650 vs. NCBI nr
Match: gi|778679936|ref|XP_011651218.1| (PREDICTED: transcription repressor KAN1-like isoform X4 [Cucumis sativus])

HSP 1 Score: 120.2 bits (300), Expect = 2.8e-24
Identity = 58/64 (90.62%), Postives = 60/64 (93.75%), Query Frame = 1


Query: 74  DVWPQTNSNEMD--VIRPTLSTQQKSMHQIQECDSGAMKRYNSECKKPSLEFRLGRAEWD 133
           DVWPQTNSNEMD  V  PTLSTQQK+MHQIQECDSGAMKRYNSECKKPSLEFRLGRAEWD
Sbjct: 334 DVWPQTNSNEMDNNVNTPTLSTQQKTMHQIQECDSGAMKRYNSECKKPSLEFRLGRAEWD 393

Query: 134 VKED 136
           VK+D
Sbjct: 394 VKQD 397

[Close]

BLAST of Lsi05G002650 vs. NCBI nr
Match: gi|778679940|ref|XP_011651219.1| (PREDICTED: transcription repressor KAN1-like isoform X5 [Cucumis sativus])

HSP 1 Score: 120.2 bits (300), Expect = 2.8e-24
Identity = 58/64 (90.62%), Postives = 60/64 (93.75%), Query Frame = 1


Query: 74  DVWPQTNSNEMD--VIRPTLSTQQKSMHQIQECDSGAMKRYNSECKKPSLEFRLGRAEWD 133
           DVWPQTNSNEMD  V  PTLSTQQK+MHQIQECDSGAMKRYNSECKKPSLEFRLGRAEWD
Sbjct: 128 DVWPQTNSNEMDNNVNTPTLSTQQKTMHQIQECDSGAMKRYNSECKKPSLEFRLGRAEWD 187

Query: 134 VKED 136
           VK+D
Sbjct: 188 VKQD 191

[Close]

BLAST of Lsi05G002650 vs. NCBI nr
Match: gi|778679933|ref|XP_011651217.1| (PREDICTED: transcription repressor KAN1-like isoform X3 [Cucumis sativus])

HSP 1 Score: 120.2 bits (300), Expect = 2.8e-24
Identity = 58/64 (90.62%), Postives = 60/64 (93.75%), Query Frame = 1


Query: 74  DVWPQTNSNEMD--VIRPTLSTQQKSMHQIQECDSGAMKRYNSECKKPSLEFRLGRAEWD 133
           DVWPQTNSNEMD  V  PTLSTQQK+MHQIQECDSGAMKRYNSECKKPSLEFRLGRAEWD
Sbjct: 335 DVWPQTNSNEMDNNVNTPTLSTQQKTMHQIQECDSGAMKRYNSECKKPSLEFRLGRAEWD 394

Query: 134 VKED 136
           VK+D
Sbjct: 395 VKQD 398

[Close]

BLAST of Lsi05G002650 vs. NCBI nr
Match: gi|659112401|ref|XP_008456202.1| (PREDICTED: transcription repressor KAN1-like isoform X3 [Cucumis melo])

HSP 1 Score: 116.3 bits (290), Expect = 4.1e-23
Identity = 55/63 (87.30%), Postives = 59/63 (93.65%), Query Frame = 1


Query: 74  DVWPQTNSNEMDVIR-PTLSTQQKSMHQIQECDSGAMKRYNSECKKPSLEFRLGRAEWDV 133
           DVWPQTNSNEMD +  PTLSTQ+K MHQIQECDSGA+KRYNSECKKPSLEFRLGRAEWDV
Sbjct: 223 DVWPQTNSNEMDNVNTPTLSTQRKFMHQIQECDSGAIKRYNSECKKPSLEFRLGRAEWDV 282

Query: 134 KED 136
           K+D
Sbjct: 283 KQD 285

The following BLAST results are available for this feature:

BLAST of Lsi05G002650 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi05G002650 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBR3_CUCSA	2.0e-24	90.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G194380 PE=4 SV=1	[more]
B9SR80_RICCO	3.1e-09	53.85	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0111720 PE=4 SV=1	[more]
U5FLN3_POPTR	6.8e-09	51.52	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s02220g PE=4 SV=1	[more]
K7MPV6_SOYBN	7.6e-08	39.80	Uncharacterized protein OS=Glycine max GN=GLYMA_18G043000 PE=4 SV=1	[more]
G7J8N8_MEDTR	1.7e-07	41.24	Transcription factor KAN2 OS=Medicago truncatula GN=MTR_3g064840 PE=4 SV=2	[more]

BLAST of Lsi05G002650 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi05G002650 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449445939\|ref\|XP_004140729.1\|	2.8e-24	90.63	PREDICTED: transcription repressor KAN1-like isoform X1 [Cucumis sativus]	[more]
gi\|778679936\|ref\|XP_011651218.1\|	2.8e-24	90.63	PREDICTED: transcription repressor KAN1-like isoform X4 [Cucumis sativus]	[more]
gi\|778679940\|ref\|XP_011651219.1\|	2.8e-24	90.63	PREDICTED: transcription repressor KAN1-like isoform X5 [Cucumis sativus]	[more]
gi\|778679933\|ref\|XP_011651217.1\|	2.8e-24	90.63	PREDICTED: transcription repressor KAN1-like isoform X3 [Cucumis sativus]	[more]
gi\|659112401\|ref\|XP_008456202.1\|	4.1e-23	87.30	PREDICTED: transcription repressor KAN1-like isoform X3 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0008150	biological_process
biological_process	GO:0003002	regionalization
biological_process	GO:0007275	multicellular organism development
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G002650.1	Lsi05G002650.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31496	FAMILY NOT NAMED	coord: 76..135 score: 1.1
None	No IPR available	PANTHER	PTHR31496:SF3	SUBFAMILY NOT NAMED	coord: 76..135 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G002650	Csa3G194380	Cucumber (Chinese Long) v2	culsiB211
Lsi05G002650	CSPI03G17880	Wild cucumber (PI 183967)	cpilsiB209
Lsi05G002650	CmaCh14G008750	Cucurbita maxima (Rimu)	cmalsiB249
Lsi05G002650	CmaCh01G003330	Cucurbita maxima (Rimu)	cmalsiB440
Lsi05G002650	CmoCh14G008930	Cucurbita moschata (Rifu)	cmolsiB237
Lsi05G002650	Cla013124	Watermelon (97103) v1	lsiwmB361
Lsi05G002650	MELO3C019573.2	Melon (DHL92) v3.6.1	lsimedB384
Lsi05G002650	Cla97C05G092910	Watermelon (97103) v2	lsiwmbB329
Lsi05G002650	Cp4.1LG03g05650	Cucurbita pepo (Zucchini)	cpelsiB511
Lsi05G002650	Cp4.1LG02g16670	Cucurbita pepo (Zucchini)	cpelsiB470
Lsi05G002650	CsGy3G017820	Cucumber (Gy14) v2	cgyblsiB198
Lsi05G002650	Carg24246	Silver-seed gourd	carlsiB158
Lsi05G002650	Carg07424	Silver-seed gourd	carlsiB700

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G002650	Melon (DHL92) v3.5.1	lsimeB368
Lsi05G002650	Watermelon (Charleston Gray)	lsiwcgB332
Lsi05G002650	Cucumber (Chinese Long) v3	cuclsiB230
Lsi05G002650	Wax gourd	lsiwgoB431
Lsi05G002650	Cucumber (Gy14) v1	cgylsiB144
Lsi05G002650	Cucurbita moschata (Rifu)	cmolsiB430