Carg24246 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24246
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	transcription repressor KAN1-like isoform X4
Location	Cucurbita_argyrosperma_scaffold_191 : 225526 .. 225989 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTATCTAGCTTGGGCTGAGTGTGTAAGATCAAAACGTGCGCTTCTAGAATGGCTCGAGGTCATTGAGCCAAAAAGGCATCCTAAGAGCGCTGGGTCCGATTCGGGATTCTACCTTGTTTCTAAATCTTCATTTTGTGTATCTTAGAAATGAATTTTGTTTTTGTGGGTGTTCCTCAAATACAATCATGTTGTTTTGTGCTTCATTTTGCAGAGATGTTTGGGCAGAAACAAACGGCAATGAAATGGATGTGATTAGGCCAAGTTTGTATGCCAAAATGCAGCAGAAATGCATGCACCAAATTCAGGTAGCCTTATATAGCATGTATGGGAGTGATTGTTGTTAATTTTAAAGATGAAAAAAGTGTGGGAGAATTTGAACAAAGTATATGACAGGAATGTGATTCAGGTGCAATGAAGAAATACAATTCAGAATGCTGCAACAAACCAAGCTTGGAGTTC

mRNA sequence

ATGTCTTATCTAGCTTGGGCTGAGTGTGTAAGATCAAAACGTGCGCTTCTAGAATGGCTCGAGGTCATTGAGCCAAAAAGGCATCCTAAGAGCGCTGGAGATGTTTGGGCAGAAACAAACGGCAATGAAATGGATGTGATTAGGCCAAGTTTGTATGCCAAAATGCAGCAGAAATGCATGCACCAAATTCAGGAATGTGATTCAGGTGCAATGAAGAAATACAATTCAGAATGCTGCAACAAACCAAGCTTGGAGTTC

Coding sequence (CDS)

ATGTCTTATCTAGCTTGGGCTGAGTGTGTAAGATCAAAACGTGCGCTTCTAGAATGGCTCGAGGTCATTGAGCCAAAAAGGCATCCTAAGAGCGCTGGAGATGTTTGGGCAGAAACAAACGGCAATGAAATGGATGTGATTAGGCCAAGTTTGTATGCCAAAATGCAGCAGAAATGCATGCACCAAATTCAGGAATGTGATTCAGGTGCAATGAAGAAATACAATTCAGAATGCTGCAACAAACCAAGCTTGGAGTTC

Protein sequence

MSYLAWAECVRSKRALLEWLEVIEPKRHPKSAGDVWAETNGNEMDVIRPSLYAKMQQKCMHQIQECDSGAMKKYNSECCNKPSLEF

Homology

[Close]

BLAST of Carg24246 vs. NCBI nr
Match: XP_022934721.1 (transcription repressor KAN1-like isoform X4 [Cucurbita moschata])

HSP 1 Score: 119.4 bits (298), Expect = 6.0e-24
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 31  SAGDVWAETNGNEMDVIRPSLYAKMQQKCMHQIQECDSGAMKKYNSECCNKPSLEF 87
           S+ DVWAETNGNEMDVIRPSLYAKMQQKCMHQIQECDSGAMKKYNSECCNKPSLEF
Sbjct: 307 SSRDVWAETNGNEMDVIRPSLYAKMQQKCMHQIQECDSGAMKKYNSECCNKPSLEF 362

[Close]

BLAST of Carg24246 vs. NCBI nr
Match: XP_022934724.1 (transcription repressor KAN1-like isoform X6 [Cucurbita moschata] >XP_022934725.1 transcription repressor KAN1-like isoform X6 [Cucurbita moschata])

HSP 1 Score: 119.4 bits (298), Expect = 6.0e-24
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 31  SAGDVWAETNGNEMDVIRPSLYAKMQQKCMHQIQECDSGAMKKYNSECCNKPSLEF 87
           S+ DVWAETNGNEMDVIRPSLYAKMQQKCMHQIQECDSGAMKKYNSECCNKPSLEF
Sbjct: 248 SSRDVWAETNGNEMDVIRPSLYAKMQQKCMHQIQECDSGAMKKYNSECCNKPSLEF 303

[Close]

BLAST of Carg24246 vs. NCBI nr
Match: XP_022934720.1 (transcription repressor KAN1-like isoform X3 [Cucurbita moschata])

HSP 1 Score: 119.4 bits (298), Expect = 6.0e-24
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 31  SAGDVWAETNGNEMDVIRPSLYAKMQQKCMHQIQECDSGAMKKYNSECCNKPSLEF 87
           S+ DVWAETNGNEMDVIRPSLYAKMQQKCMHQIQECDSGAMKKYNSECCNKPSLEF
Sbjct: 313 SSRDVWAETNGNEMDVIRPSLYAKMQQKCMHQIQECDSGAMKKYNSECCNKPSLEF 368

[Close]

BLAST of Carg24246 vs. NCBI nr
Match: XP_022934722.1 (transcription repressor KAN1-like isoform X5 [Cucurbita moschata])

HSP 1 Score: 119.4 bits (298), Expect = 6.0e-24
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 31  SAGDVWAETNGNEMDVIRPSLYAKMQQKCMHQIQECDSGAMKKYNSECCNKPSLEF 87
           S+ DVWAETNGNEMDVIRPSLYAKMQQKCMHQIQECDSGAMKKYNSECCNKPSLEF
Sbjct: 306 SSRDVWAETNGNEMDVIRPSLYAKMQQKCMHQIQECDSGAMKKYNSECCNKPSLEF 361

[Close]

BLAST of Carg24246 vs. NCBI nr
Match: XP_022934718.1 (transcription repressor KAN1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 119.4 bits (298), Expect = 6.0e-24
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 31  SAGDVWAETNGNEMDVIRPSLYAKMQQKCMHQIQECDSGAMKKYNSECCNKPSLEF 87
           S+ DVWAETNGNEMDVIRPSLYAKMQQKCMHQIQECDSGAMKKYNSECCNKPSLEF
Sbjct: 348 SSRDVWAETNGNEMDVIRPSLYAKMQQKCMHQIQECDSGAMKKYNSECCNKPSLEF 403

[Close]

BLAST of Carg24246 vs. TrEMBL
Match: tr|A0A0A0LBR3|A0A0A0LBR3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G194380 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.9e-10
Identity = 40/58 (68.97%), Postives = 44/58 (75.86%), Query Frame = 0


Query: 31  SAGDVWAETNGNEMD--VIRPSLYAKMQQKCMHQIQECDSGAMKKYNSECCNKPSLEF 87
           S+ DVW +TN NEMD  V  P+L    QQK MHQIQECDSGAMK+YNSE C KPSLEF
Sbjct: 380 SSRDVWPQTNSNEMDNNVNTPTL--STQQKTMHQIQECDSGAMKRYNSE-CKKPSLEF 434

[Close]

BLAST of Carg24246 vs. TrEMBL
Match: tr|A0A1S3C2S7|A0A1S3C2S7_CUCME (transcription repressor KAN1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496208 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.6e-09
Identity = 38/57 (66.67%), Postives = 44/57 (77.19%), Query Frame = 0


Query: 31  SAGDVWAETNGNEMD-VIRPSLYAKMQQKCMHQIQECDSGAMKKYNSECCNKPSLEF 87
           S+ DVW +TN NEMD V  P+L    Q+K MHQIQECDSGA+K+YNSE C KPSLEF
Sbjct: 269 SSRDVWPQTNSNEMDNVNTPTL--STQRKFMHQIQECDSGAIKRYNSE-CKKPSLEF 322

[Close]

BLAST of Carg24246 vs. TrEMBL
Match: tr|A0A1S3C2A4|A0A1S3C2A4_CUCME (transcription repressor KAN1-like isoform X4 OS=Cucumis melo OX=3656 GN=LOC103496208 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.6e-09
Identity = 38/57 (66.67%), Postives = 44/57 (77.19%), Query Frame = 0


Query: 31  SAGDVWAETNGNEMD-VIRPSLYAKMQQKCMHQIQECDSGAMKKYNSECCNKPSLEF 87
           S+ DVW +TN NEMD V  P+L    Q+K MHQIQECDSGA+K+YNSE C KPSLEF
Sbjct: 123 SSRDVWPQTNSNEMDNVNTPTL--STQRKFMHQIQECDSGAIKRYNSE-CKKPSLEF 176

[Close]

BLAST of Carg24246 vs. TrEMBL
Match: tr|A0A1S3C3Y9|A0A1S3C3Y9_CUCME (transcription repressor KAN1-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103496208 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.6e-09
Identity = 38/57 (66.67%), Postives = 44/57 (77.19%), Query Frame = 0


Query: 31  SAGDVWAETNGNEMD-VIRPSLYAKMQQKCMHQIQECDSGAMKKYNSECCNKPSLEF 87
           S+ DVW +TN NEMD V  P+L    Q+K MHQIQECDSGA+K+YNSE C KPSLEF
Sbjct: 220 SSRDVWPQTNSNEMDNVNTPTL--STQRKFMHQIQECDSGAIKRYNSE-CKKPSLEF 273

[Close]

BLAST of Carg24246 vs. TrEMBL
Match: tr|A0A2P4IRN6|A0A2P4IRN6_QUESU (Transcription repressor kan1 OS=Quercus suber OX=58331 GN=CFP56_34569 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 4.6e-04
Identity = 24/55 (43.64%), Postives = 34/55 (61.82%), Query Frame = 0


Query: 34  DVWAETNGNEMDVIRPSLYAKMQQKCMHQIQECDSGAMKKY--NSECCNKPSLEF 87
           D W + N NE++V+RP+ +   Q+   H IQECDS  +K Y  ++  C  PSLEF
Sbjct: 371 DAWPQANSNEVEVLRPASFDSQQRSRGHHIQECDSTQLKSYLGSTLDCKNPSLEF 425

The following BLAST results are available for this feature:

BLAST of Carg24246 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022934721.1	6.0e-24	96.43	transcription repressor KAN1-like isoform X4 [Cucurbita moschata]	[more]
XP_022934724.1	6.0e-24	96.43	transcription repressor KAN1-like isoform X6 [Cucurbita moschata] >XP_022934725....	[more]
XP_022934720.1	6.0e-24	96.43	transcription repressor KAN1-like isoform X3 [Cucurbita moschata]	[more]
XP_022934722.1	6.0e-24	96.43	transcription repressor KAN1-like isoform X5 [Cucurbita moschata]	[more]
XP_022934718.1	6.0e-24	96.43	transcription repressor KAN1-like isoform X1 [Cucurbita moschata]	[more]

BLAST of Carg24246 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg24246 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg24246 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LBR3\|A0A0A0LBR3_CUCSA	1.9e-10	68.97	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G194380 PE=4 SV=1	[more]
tr\|A0A1S3C2S7\|A0A1S3C2S7_CUCME	1.6e-09	66.67	transcription repressor KAN1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
tr\|A0A1S3C2A4\|A0A1S3C2A4_CUCME	1.6e-09	66.67	transcription repressor KAN1-like isoform X4 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
tr\|A0A1S3C3Y9\|A0A1S3C3Y9_CUCME	1.6e-09	66.67	transcription repressor KAN1-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
tr\|A0A2P4IRN6\|A0A2P4IRN6_QUESU	4.6e-04	43.64	Transcription repressor kan1 OS=Quercus suber OX=58331 GN=CFP56_34569 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24246-RA	Carg24246-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24246	Lsi05G002650	Bottle gourd (USVL1VR-Ls)	carlsiB158

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24246	Wax gourd	carwgoB0227
Carg24246	Silver-seed gourd	carcarB213
Carg24246	Cucumber (Gy14) v2	carcgybB0190
Carg24246	Cucumber (Gy14) v1	carcgyB0216
Carg24246	Cucurbita maxima (Rimu)	carcmaB0240
Carg24246	Cucurbita maxima (Rimu)	carcmaB0241
Carg24246	Cucurbita moschata (Rifu)	carcmoB0248
Carg24246	Cucurbita moschata (Rifu)	carcmoB0249
Carg24246	Cucurbita pepo (Zucchini)	carcpeB0256
Carg24246	Cucurbita pepo (Zucchini)	carcpeB0257
Carg24246	Wild cucumber (PI 183967)	carcpiB0203
Carg24246	Cucumber (Chinese Long) v2	carcuB0196
Carg24246	Cucumber (Chinese Long) v3	carcucB0203
Carg24246	Melon (DHL92) v3.5.1	carmeB0181
Carg24246	Melon (DHL92) v3.6.1	carmedB0185
Carg24246	Watermelon (Charleston Gray)	carwcgB0168
Carg24246	Watermelon (97103) v1	carwmB0166
Carg24246	Watermelon (97103) v2	carwmbB0181