Lsi05G001170 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi05G001170
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description3'-5' exonuclease domain-containing family protein
Locationchr05 : 1877034 .. 1880100 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGGCGGATGATCTTGATCACGTGGCAGTACACGTAGATTATGACGTTGGAACATCCCTTTGCATCTACCGGCAAAAAAATTTCAATTTACTCCATTTTGTGGATAAAATAGACAGATAAAAATTATTTTTTGGTTGAAAATATTGAAAAAGAGTGGGTAAAAATTTGAAGAACATCGAGCCGTTTTGATAATATTTTCGCTTCATGTTTCTTTTCTATTTCTCATTTGATAAGAAATAGACTTGTTTAATAATTATTCATGTTTTCCGTTTCTAATTTTTAAGAAACGTTTCTTAAAATAGAGCTAAATTTGAAAAAATCATAGTTTATTTTGGTTCCATTTCTAGTTTATCTTGTTTCTCAAAATTAACCAATTATATTTTTGATTGATTGGTAATAAGGCGCGCAGATTTTACCTCCCGATTCGTTAGTTAGAATTAGAATTCTAGGTGAGACAAAAATTTATTTATTTTTAATTTTTTTTATACTTAATTTTACAATATTTATTTCTTTAAGACGAGATCATTTAGAACAATGGTTCTAAAGGGTTGTTCACAATGAAAATTATCTATCATTTAGCTTATTATCTTGCAAATAGCATTGGTGCTTTCTCATTCGGGTATGTTTGGGTGTCATTCCAACCCCGACTTCTGAAAGCGATTTTCGAAAGTTCAAGTTTTGCCTAAAGCAAAATTATGTGCTTGGAAATTTATCAATGAAGCCTTACCTACTAAAGCAAATACTATTAATAGAGGGGTGGATATTAATCCTTGATGCTTGTTTTGTAGGACAAATGTGGAGTTGGAGGCACACATTTTTGGGCTTTGCAAGTTTTTGAAACGAGTTTGGTTGAATTATTTTTCCATGCAAAAGCTCTCTTCCGGATCTTTGCAGGGTTGATTGGAATTCCTTTTCTATCTATTACGGACTTACTTTAGGATGAAGATCTCAAAGCTTCTATTTTTATCCTTGGGTGTGTTTGAGACTATAGAAATACTTTAAATTTATTGAGAGCAAAAGTTTCTTTTCTGCATCTTAAAGCGAATATTGATTGATGGATTGAGTTTGATTCGGTCTAATTTTATCTCTGTAGAGGTAAAAGCTTGTGAGTCATGGTTCTTGGATTCCTCCTCCTCCAAGTGCGTGGAAGCTGAACATAAAGGTTCTTGAAGCTCGGGCAGTCTACGAAGGTCTTCGGTGGTGCTCCGTATAGTTTCCGGAGAGGCCAAATGTGATTTTGGTGGATTCTAACGCCCTTAAAGTGGTAAAACTACTGAATGTGGTGACTTTATTAAAATTTATAAAATATTTTTGTTTTAACCTAACGCTTTGGCGGGTTTATTTTTCTTTTTTTTTTAATCATTCCAGCAATTCTATTGCACATCGTTTTGCTCAAGTCGGTGTTGGGCCAAAGGGGATGTTTTGTGTAAGTCTTCCTCCCTGGAAAACTTTGGGAGTTGTTAGGTTTTTTAATCATTCCAATAGGTTCCTTAGGTAGCTATCATTTACATTGAAAGAGGACTGCATTGCTATGTTGTTGGTGCTTATTAGCTTTATGTAGTATCTCTTTTCGAAAAAACAGAAAAGATGAAAAAAGAAAAGAAAAAGAAAAGGGTAATACTGGGATGCACCTATCTCTATGTTTTTCCTTCTATCACTCACATCAAAAAAATTAATTAAAATATTTCAATAAATAAATAAAAATAGTTAAATTTTTAAAATTAGAAAAATAAGGGAAACTATTTATACAAAATAGTAAAATTTTTATATAGTTGTTATAGACGCGGATAGAAGTGTATTATAGTCTATAAATGATAAAAAAATAGAAATTTATTATTGATAAATGTTAATAAAAATCTATCAATATCTATAAGTATTTTTTTTTATTTACTGTAAATAGTTTGACATCTGTGAAAATTTTCGTAATGTATTTTTTAAAAGAATAGAAAATCGGTATATAATAACAAATAAGCCGAATTTGACGTTAGATGTGTCTTCTTATGGATTCCCAGAACGGCCGGCCTTCCTTTGAAATCCACATTGTTTCTTCTATCGACTCTCCCGAGTTCAATCAGCTAACTCACACACTGACTCGCTCTCACCTTATTGCCCTCGACGCCGAGTGGAAGCCCCTTCGAACTCCTGATCAACATTCTTCATTCCCCAGAGTCTCTCTTCTCCAGATCGCTTGCCAATTCCACTCCGACCACCGGAATGATTCCGTGGTTTTTCTGCTCGACCTGCTCTCGGTTCCTTTATCCTCAGTTTGGGATTTGTTAAGGGATGTTTTTGTTTCACCCCATGTTTTGAAATTGGGTTTTCGATTTAAGCAAGATTTGGTTTACCTGTCCACTACTTTCTGCTCCCATGGCGGTCTCTCTGGTCTTGATCGTGTAAGTGTACAAATCTGGATTAAATTTTTGTTTTGTTTGAGTTTGGGAGTTTCTAGTACAGTATTCTAAATTTTCTCCTTAAATGTATTGTTTTAGATTGAACCCTTTATGGATATTACGAGCATTTACAATCATCTTCAACATAAGCAAAATGGAAGAAAGTTGCATAAGCAAACTAAGAGTCTTGCAGCTATCTGCAATGAAGTACTGGGATTCTCTCTTTCGAAGGTTTGTCCATTTCACTTCCACATGTAACTAGTTTGACGTTCTTTAACATACTTCATATTACCTTTTTTATTACGTTTGTAGACTTTTTACACTTTCCACATGTAGTCTTGTTTGTCAATTCAGTGATGTCCTATAACCAAATCATTCAATTGCTGTTCTAGTAGGCTGTTTTGGTGGTCTTTTTGAGCTTTCTCTTGAATCTTTCCAATGAGCTAAGGCTCTTCCTCAAGTCAATATGAAGAAGTAATTTCGTACTAATTGTGAATCTTGATTTATATCTTCTTTAGGAACTTCAATGTAGTGATTGGTCATTTCGTCCCCTCACAGAAGAGCAGATAGCATACGCAGCCATGGATGCCCACTGCTTGCTCGAAATATTTAATGTCTTCTGCTCCAAGGTTCTTAAAGAAGGTCTGTCAGTGTCTGAACCTTGGGATTTCTAG

mRNA sequence

ATGCTGGCGGATGATCTTGATCACGTGGCAGTACACGTAGATTATGACATGTGTCTTCTTATGGATTCCCAGAACGGCCGGCCTTCCTTTGAAATCCACATTGTTTCTTCTATCGACTCTCCCGAGTTCAATCAGCTAACTCACACACTGACTCGCTCTCACCTTATTGCCCTCGACGCCGAGTGGAAGCCCCTTCGAACTCCTGATCAACATTCTTCATTCCCCAGAGTCTCTCTTCTCCAGATCGCTTGCCAATTCCACTCCGACCACCGGAATGATTCCGTGGTTTTTCTGCTCGACCTGCTCTCGGTTCCTTTATCCTCAGTTTGGGATTTGTTAAGGGATGTTTTTGTTTCACCCCATGTTTTGAAATTGGGTTTTCGATTTAAGCAAGATTTGGTTTACCTGTCCACTACTTTCTGCTCCCATGGCGGTCTCTCTGGTCTTGATCGTATTGAACCCTTTATGGATATTACGAGCATTTACAATCATCTTCAACATAAGCAAAATGGAAGAAAGTTGCATAAGCAAACTAAGAGTCTTGCAGCTATCTGCAATGAAGTACTGGGATTCTCTCTTTCGAAGGTTTGTCCATTTCACTTCCACATTCTTGTTTGTCAATTCAGTGATGAACTTCAATGTAGTGATTGGTCATTTCGTCCCCTCACAGAAGAGCAGATAGCATACGCAGCCATGGATGCCCACTGCTTGCTCGAAATATTTAATGTCTTCTGCTCCAAGGTTCTTAAAGAAGGTCTGTCAGTGTCTGAACCTTGGGATTTCTAG

Coding sequence (CDS)

ATGCTGGCGGATGATCTTGATCACGTGGCAGTACACGTAGATTATGACATGTGTCTTCTTATGGATTCCCAGAACGGCCGGCCTTCCTTTGAAATCCACATTGTTTCTTCTATCGACTCTCCCGAGTTCAATCAGCTAACTCACACACTGACTCGCTCTCACCTTATTGCCCTCGACGCCGAGTGGAAGCCCCTTCGAACTCCTGATCAACATTCTTCATTCCCCAGAGTCTCTCTTCTCCAGATCGCTTGCCAATTCCACTCCGACCACCGGAATGATTCCGTGGTTTTTCTGCTCGACCTGCTCTCGGTTCCTTTATCCTCAGTTTGGGATTTGTTAAGGGATGTTTTTGTTTCACCCCATGTTTTGAAATTGGGTTTTCGATTTAAGCAAGATTTGGTTTACCTGTCCACTACTTTCTGCTCCCATGGCGGTCTCTCTGGTCTTGATCGTATTGAACCCTTTATGGATATTACGAGCATTTACAATCATCTTCAACATAAGCAAAATGGAAGAAAGTTGCATAAGCAAACTAAGAGTCTTGCAGCTATCTGCAATGAAGTACTGGGATTCTCTCTTTCGAAGGTTTGTCCATTTCACTTCCACATTCTTGTTTGTCAATTCAGTGATGAACTTCAATGTAGTGATTGGTCATTTCGTCCCCTCACAGAAGAGCAGATAGCATACGCAGCCATGGATGCCCACTGCTTGCTCGAAATATTTAATGTCTTCTGCTCCAAGGTTCTTAAAGAAGGTCTGTCAGTGTCTGAACCTTGGGATTTCTAG

Protein sequence

MLADDLDHVAVHVDYDMCLLMDSQNGRPSFEIHIVSSIDSPEFNQLTHTLTRSHLIALDAEWKPLRTPDQHSSFPRVSLLQIACQFHSDHRNDSVVFLLDLLSVPLSSVWDLLRDVFVSPHVLKLGFRFKQDLVYLSTTFCSHGGLSGLDRIEPFMDITSIYNHLQHKQNGRKLHKQTKSLAAICNEVLGFSLSKVCPFHFHILVCQFSDELQCSDWSFRPLTEEQIAYAAMDAHCLLEIFNVFCSKVLKEGLSVSEPWDF
Homology
[Close]
BLAST of Lsi05G001170 vs. Swiss-Prot
Match: MUT7_AEDAE (Exonuclease mut-7 homolog OS=Aedes aegypti GN=AAEL005527 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.8e-12
Identity = 61/216 (28.24%), Postives = 99/216 (45.83%), Query Frame = 1 

Query: 32  IHIVSSIDSPEFNQLTHTLTRSHLIALDAEWKPLRTPDQHSSFPRVSLLQIACQFHSDHR 91
           +H+V S D  +F  +   L R  +IA D+EWKP            VSL+Q+A        
Sbjct: 437 VHLVDSKD--KFYAMLSDLCRQSMIAFDSEWKPT-----FGGANEVSLIQLATW------ 496

Query: 92  NDSVVFLLDLLSVPLSSV-WDLL-RDVFVSPHVLKLGFRFKQDLVYLSTTFCSHGGLSGL 151
               V+++D++   L  + W  L ++VF    VLKL F    D+        S   +   
Sbjct: 497 --DDVYMIDVMVSQLEPLDWAALAKNVFNRDDVLKLSFAPSTDISMFQKALPSFNVMYSS 556

Query: 152 DRIEPFMDITSIYNHLQHKQNGR-KLHKQT--KSLAAICNEVLGFSLSKVCPFHFHILVC 211
                 +D+  ++ H++   + R   H+++  ++LA +    LG  L K   F       
Sbjct: 557 QSTSAILDLQLLWRHVERFDSFRFPYHEESVNQNLANLVRLCLGKKLDKSNQF------- 616

Query: 212 QFSDELQCSDWSFRPLTEEQIAYAAMDAHCLLEIFN 243
                   S+W+ RPL +EQ+ YAA+DA CLLEI++
Sbjct: 617 --------SNWAQRPLRKEQLRYAALDAFCLLEIYD 622

[Close]
BLAST of Lsi05G001170 vs. Swiss-Prot
Match: MUT7_HUMAN (Exonuclease mut-7 homolog OS=Homo sapiens GN=EXD3 PE=2 SV=3)

HSP 1 Score: 73.2 bits (178), Expect = 4.8e-12
Identity = 64/239 (26.78%), Postives = 107/239 (44.77%), Query Frame = 1 

Query: 28  PSFEIHIVSSIDSPEFNQLTHTLTRSH-LIALDAEWKPLRTPDQHSSFPRVSLLQIACQF 87
           P   +H+++S +  +  +    L + H ++ +D EW P+         PR SLLQ+A + 
Sbjct: 369 PRENVHLLASWE--DLTRHEGALLQCHQVVGVDVEWTPVFVAGGR---PRPSLLQVAVEG 428

Query: 88  HSDHRNDSVVFLLDLLSVPLSSVWD-------LLRDVFVSPHVLKLGFRFKQDLVYLSTT 147
           H        VFLLD+L++              L+  +   P + KLG+    DL  L T 
Sbjct: 429 H--------VFLLDVLALSQPPTGQGAQAFSRLVAQLLSDPSITKLGYGMVGDLQKLGT- 488

Query: 148 FCSHGGLSGLDR-IEPFMDITSIYNHLQHKQNGRKL---HKQTKSLAAICNEVLGFSLSK 207
             S   L+ +++ I   MD+  ++  ++            ++ + L+ +  +VLG +L K
Sbjct: 489 --SCPALAHVEKQILGGMDLLLVHRQMRVASVPAPAVDRARELRGLSLLVQQVLGTALDK 548

Query: 208 VCPFHFHILVCQFSDELQCSDWSFRPLTEEQIAYAAMDAHCLLEIFNVFCSKVLKEGLS 255
                            Q S+W  RPL EEQ+ YAA DA+CLLE+    C +  +  LS
Sbjct: 549 T---------------QQLSNWDRRPLCEEQVIYAAADAYCLLEVHQALCREPARFHLS 576

[Close]
BLAST of Lsi05G001170 vs. Swiss-Prot
Match: MUT7_DROME (Exonuclease mut-7 homolog OS=Drosophila melanogaster GN=Nbr PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.6e-10
Identity = 67/241 (27.80%), Postives = 111/241 (46.06%), Query Frame = 1 

Query: 16  DMCLLMDSQNGRPSFEIHIVSSIDSPEFNQLTHTLTRSHLIALDAEWKPLRTPDQHSSFP 75
           DM L MD     P   + IV+  D  EF+++ + L +  +I LD+EW      D      
Sbjct: 398 DMYLTMDL----PDECLIIVNKAD--EFDRMLYHLQQECVIYLDSEWMQSVCGDN----- 457

Query: 76  RVSLLQIACQFHSDHRNDSVVFLLDLLSVPL--SSVWDLL-RDVFVSPHVLKLGFRFKQD 135
           ++ +LQIA   +        V+L+D L+     S  W LL  ++F + ++ K+GF    D
Sbjct: 458 QLCVLQIATGHN--------VYLIDCLARESLRSEHWRLLGANIFNNVNIRKVGFSMVSD 517

Query: 136 LVYLSTTFCSHGGLSGLDRIEPFMDITSIYNHLQHKQNGRKL-----HKQTKSLAAICNE 195
           L  L  +         L     ++D+ +++  L+ ++ G +L     ++   +L  +   
Sbjct: 518 LSVLQRSLPLQ---LRLQMPHHYLDLRNLWLELKKQRFGVELPFGNVNRAGDALTDLSLA 577

Query: 196 VLGFSLSKVCPFHFHILVCQFSDELQCSDWSFRPLTEEQIAYAAMDAHCLLEIFNVFCSK 249
            LG  L+K                 QCS+W+ RPL  EQI YAA+DA CL+ I+N    +
Sbjct: 578 CLGKKLNK---------------SNQCSNWANRPLRREQILYAAIDARCLMLIYNTLIER 601

[Close]
BLAST of Lsi05G001170 vs. Swiss-Prot
Match: RP6L3_ARATH (Protein RRP6-like 3 OS=Arabidopsis thaliana GN=RRP6L3 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 7.2e-08
Identity = 54/199 (27.14%), Postives = 81/199 (40.70%), Query Frame = 1 

Query: 42  EFNQLTHTLTRSHLIALDAEWKPLRTPDQHSSFPRVSLLQIACQFHSDHRNDSVVFLLDL 101
           +  +L   L +  + A+D E   LR     S     +L+QI     S H  D   FL+D 
Sbjct: 127 QLKELAEILAKEQVFAVDTEQHSLR-----SFLGFTALIQI-----STHEED---FLVD- 186

Query: 102 LSVPLSSVWDLLRDVFVSPHVLKLGFRFKQDLVYLSTTFCSHGGLSGLDRIEPFMDITSI 161
            ++ L  V  +LR VF  P++ K+      D+++L   F  +                 +
Sbjct: 187 -TIALHDVMSILRPVFSDPNICKVFHGADNDVIWLQRDFHIY-----------------V 246

Query: 162 YNHLQHKQNGRKLHKQTKSLAAICNEVLGFSLSKVCPFHFHILVCQFSDELQCSDWSFRP 221
            N     +    L K  +SLA +   V G + +K+               LQ  DW  RP
Sbjct: 247 VNMFDTAKACEVLSKPQRSLAYLLETVCGVATNKL---------------LQREDWRQRP 278

Query: 222 LTEEQIAYAAMDAHCLLEI 241
           L+EE + YA  DAH LL I
Sbjct: 307 LSEEMVRYARTDAHYLLYI 278

[Close]
BLAST of Lsi05G001170 vs. Swiss-Prot
Match: MUT7_CAEEL (Exonuclease mut-7 OS=Caenorhabditis elegans GN=mut-7 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.4e-06
Identity = 49/198 (24.75%), Postives = 83/198 (41.92%), Query Frame = 1 

Query: 56  IALDAEWKPLRTPDQHSSFPRVSLLQIACQFHSDHRNDSVVFLLDLLSVPLSSVWD---- 115
           +  D+EWKP      H S  +++++Q+  +        + V+L+D + +  +++ D    
Sbjct: 432 VGFDSEWKPSNLTAVHDS--KIAIIQLFFK--------NCVWLVDCVELEKANMADDWWQ 491

Query: 116 -LLRDVFVSPHVLKLGFRFKQDLVYLSTTFCSHGGLSGLDRIEPFMDITSIYNHLQHKQN 175
                +F    V  +GF  + DL  ++T       +   D    F       N       
Sbjct: 492 KFASRLFGDSPVKVVGFDMRNDLDAMATIPALKSSMKIEDTKNAFDLKRLAENVCDIDME 551

Query: 176 GRKLHKQTKSLAAICNEVLGFSLSKVCPFHFHILVCQFSDELQCSDWSFRPLTEEQIAYA 235
             +L K+T  LA + + +LG  L K                 QCS+W  RPL ++QI YA
Sbjct: 552 ILELPKKTFKLADLTHYLLGLELDKT---------------EQCSNWQCRPLRKKQIVYA 604

Query: 236 AMDAHCLLEIFNVFCSKV 249
           A+DA  ++E F    S V
Sbjct: 612 ALDAVVVVETFKKILSIV 604

[Close]
BLAST of Lsi05G001170 vs. TrEMBL
Match: A0A0A0L6Q0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G238160 PE=4 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 4.9e-104
Identity = 194/234 (82.91%), Postives = 203/234 (86.75%), Query Frame = 1 

Query: 21  MDSQNGRPSFEIHIVSSIDSPEFNQLTHTLTRSHLIALDAEWKPLRTPDQHSSFPRVSLL 80
           MDS   RP+FEIH+VSSIDSPEF  LTHTLTRSHLIALDAEWKPL+TPDQHSSFPRVSLL
Sbjct: 1   MDSHIARPAFEIHLVSSIDSPEFTLLTHTLTRSHLIALDAEWKPLQTPDQHSSFPRVSLL 60

Query: 81  QIACQFHSDHRNDSVVFLLDLLSVPLSSVWDLLRDVFVSPHVLKLGFRFKQDLVYLSTTF 140
           QIACQFHSDHRNDSV FLLDLLSVPLSS+W LLRDVFVSP+VLKLGFRFKQDLVYLSTTF
Sbjct: 61  QIACQFHSDHRNDSVAFLLDLLSVPLSSIWHLLRDVFVSPYVLKLGFRFKQDLVYLSTTF 120

Query: 141 CSH--GGLSGLDRIEPFMDITSIYNHLQHKQNGRKLHKQTKSLAAICNEVLGFSLSKVCP 200
            S+  GG+SGLDRIEPFMDI SIY HLQHKQ GRKLHKQ+KSL AIC+EVLGFSLSK   
Sbjct: 121 SSYGGGGVSGLDRIEPFMDIASIYYHLQHKQKGRKLHKQSKSLTAICSEVLGFSLSK--- 180

Query: 201 FHFHILVCQFSDELQCSDWSFRPLTEEQIAYAAMDAHCLLEIFNVFCSKVLKEG 253
                       ELQCSDWS RPLTEEQIAYAAMDAHCLLEIFNVF SKVLKEG
Sbjct: 181 ------------ELQCSDWSVRPLTEEQIAYAAMDAHCLLEIFNVFYSKVLKEG 219

[Close]
BLAST of Lsi05G001170 vs. TrEMBL
Match: M5X298_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004292mg PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 1.3e-77
Identity = 154/240 (64.17%), Postives = 176/240 (73.33%), Query Frame = 1 

Query: 21  MDSQNGRPSFEIHIVSSIDSPEFNQLTHTLTRSHLIALDAEWKPLRTPDQHSSFPRVSLL 80
           MD +  RP  +IH+VSS DSPEF  LT +LTRS +IALDAEWKP+RT    SSFP VSLL
Sbjct: 1   MDPRYPRP-LKIHLVSSTDSPEFTDLTQSLTRSRIIALDAEWKPIRT--HQSSFPTVSLL 60

Query: 81  QIACQFHSD--HRNDSVVFLLDLLSVPLSSVWDLLRDVFVSPHVLKLGFRFKQDLVYLST 140
           Q+ACQ  SD    +DSVVFLLDL S+PL S+W+LLRD FVSP +LKLGFRFKQDL+YLS+
Sbjct: 61  QLACQLSSDSVESDDSVVFLLDLSSIPLPSIWELLRDAFVSPDILKLGFRFKQDLIYLSS 120

Query: 141 TFCSHGGLSGLDRIEPFMDITSIYNHLQHKQNGRKLHKQTKSLAAICNEVLGFSLSKVCP 200
           TF S G   G D++EPFMDITSIY+HLQH Q GRK  K  KSLA IC E+LG SLSK   
Sbjct: 121 TFSSQGCEQGFDKVEPFMDITSIYHHLQHSQPGRKTSKDIKSLATICKEILGISLSK--- 180

Query: 201 FHFHILVCQFSDELQCSDWSFRPLTEEQIAYAAMDAHCLLEIFNVFCSKVLKEGLSVSEP 259
                       ELQCSDWS RPLTEEQ  YAA+DA CLLEIFNVF +KV+KEG  +  P
Sbjct: 181 ------------ELQCSDWSCRPLTEEQKTYAAIDAQCLLEIFNVFQAKVIKEGSLIHSP 222

[Close]
BLAST of Lsi05G001170 vs. TrEMBL
Match: W9S1T5_9ROSA (Putative exonuclease mut-7-like protein OS=Morus notabilis GN=L484_011852 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 5.6e-76
Identity = 152/238 (63.87%), Postives = 171/238 (71.85%), Query Frame = 1 

Query: 21  MDSQNGRPSFEIHIVSSIDSPEFNQLTHTLTRSHLIALDAEWKPLRTPDQHSSFPRVSLL 80
           MD  N +P F+IH+VSS +SPEF  LT  LTRS LIA+DAEWKP R   Q +  P VSLL
Sbjct: 1   MDLGNQKP-FKIHVVSSTESPEFTHLTRALTRSLLIAIDAEWKPTRAGQQQTCLPTVSLL 60

Query: 81  QIACQFH------SDHRNDSVVFLLDLLSVPLSSVWDLLRDVFVSPHVLKLGFRFKQDLV 140
           Q+ACQ        SD   +SVVFL+DLL +PL S+W+LLRDVFVSP +LKLGFRFKQDLV
Sbjct: 61  QLACQLDPRLGGDSDESENSVVFLVDLLLIPLPSIWELLRDVFVSPDILKLGFRFKQDLV 120

Query: 141 YLSTTFCSHGGLSGLDRIEPFMDITSIYNHLQHKQNGRKLHKQTKSLAAICNEVLGFSLS 200
           YLS+TF SHG   G DRIEPF+DITS+Y  LQHKQ GRK+ K  KSLA IC EVLG SLS
Sbjct: 121 YLSSTFSSHGCNLGFDRIEPFLDITSVYKDLQHKQPGRKMSKDIKSLATICKEVLGISLS 180

Query: 201 KVCPFHFHILVCQFSDELQCSDWSFRPLTEEQIAYAAMDAHCLLEIFNVFCSKVLKEG 253
           K               ELQCSDWS RPLTE Q  YAAMDAHCLL+IFNVF  KV+KEG
Sbjct: 181 K---------------ELQCSDWSHRPLTEAQRTYAAMDAHCLLDIFNVFQHKVIKEG 222

[Close]
BLAST of Lsi05G001170 vs. TrEMBL
Match: A0A067K3P6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15506 PE=4 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 5.8e-73
Identity = 146/231 (63.20%), Postives = 173/231 (74.89%), Query Frame = 1 

Query: 21  MDSQNGRPSFEIHIVSSIDSPEFNQLTHTLTRSHLIALDAEWKPLRTPDQHSSFPRVSLL 80
           MD  N +P  +IH+VSS DSPEF  LT  LTRS +I LDAEWKP+RT  + S+FP VSLL
Sbjct: 1   MDPPNQKP-LKIHLVSSADSPEFTHLTWALTRSTIIGLDAEWKPIRT--KQSAFPNVSLL 60

Query: 81  QIACQFHSDHRNDSVVFLLDLLSVPLSSVWDLLRDVFVSPHVLKLGFRFKQDLVYLSTTF 140
           Q+ACQ    H + S VFLLDL S+ LS +WDLL++VF+SP +LKLGFRFKQDLV+LS+TF
Sbjct: 61  QLACQL-GWHSDQSPVFLLDLSSITLSLIWDLLKEVFISPDILKLGFRFKQDLVFLSSTF 120

Query: 141 CSHGGLSGLDRIEPFMDITSIYNHLQHKQNGRKLHKQTKSLAAICNEVLGFSLSKVCPFH 200
           CS G   G D +EP++DITSIY+ LQHKQ G+K+ K+TKSLA ICNE+LG SLSK     
Sbjct: 121 CSQGCDPGFDMVEPYLDITSIYHFLQHKQWGKKIPKETKSLATICNELLGISLSK----- 180

Query: 201 FHILVCQFSDELQCSDWSFRPLTEEQIAYAAMDAHCLLEIFNVFCSKVLKE 252
                     ELQCSDWS RPLTEEQ  YAA+DAHCLLEIFNVF + VLKE
Sbjct: 181 ----------ELQCSDWSHRPLTEEQKLYAAIDAHCLLEIFNVFRANVLKE 212

[Close]
BLAST of Lsi05G001170 vs. TrEMBL
Match: A0A067EWW6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g009783mg PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 7.1e-71
Identity = 141/236 (59.75%), Postives = 171/236 (72.46%), Query Frame = 1 

Query: 27  RPSFEIHIVSSIDSPEFNQLTHTLTRSHLIALDAEWKPLRTPDQHSSFPRVSLLQIACQF 86
           R   +IH+V+S +SPEF  L   L++S L+ LDAEWKP R+    S+FPRVSLLQ+ACQ 
Sbjct: 6   RKPLKIHLVTSTESPEFTHLARALSQSSLVGLDAEWKPQRS--HQSNFPRVSLLQLACQP 65

Query: 87  ------HSDHRNDSVVFLLDLLSVPLSSVWDLLRDVFVSPHVLKLGFRFKQDLVYLSTTF 146
                  SD  N SVVFLLDL S+PL S+W+LL+++FVSP +LKLGF+FKQDL+YLS+TF
Sbjct: 66  GPRFNPESDESNASVVFLLDLSSIPLPSIWELLKELFVSPDILKLGFKFKQDLIYLSSTF 125

Query: 147 CSHGGLSGLDRIEPFMDITSIYNHLQHKQNGRKLHKQTKSLAAICNEVLGFSLSKVCPFH 206
           CS G   G DR+EP++DITSIYNHL HKQ GRKL K+TKSLA IC E+L  SLSK     
Sbjct: 126 CSQGCDIGFDRVEPYLDITSIYNHLHHKQLGRKLPKETKSLANICKELLDISLSK----- 185

Query: 207 FHILVCQFSDELQCSDWSFRPLTEEQIAYAAMDAHCLLEIFNVFCSKVLKEGLSVS 257
                     ELQCSDWS RPLTEEQ  YAA+DAHCL+EIFN+F  KV ++G S S
Sbjct: 186 ----------ELQCSDWSNRPLTEEQKNYAAIDAHCLIEIFNIFQVKVAQKGNSCS 224

[Close]
BLAST of Lsi05G001170 vs. TAIR10
Match: AT5G24340.1 (AT5G24340.1 3'-5' exonuclease domain-containing protein)

HSP 1 Score: 243.8 bits (621), Expect = 1.2e-64
Identity = 132/230 (57.39%), Postives = 160/230 (69.57%), Query Frame = 1 

Query: 29  SFEIHIVSSIDSPEFNQLTHTLTRSHLIALDAEWKPLRTPDQHSSFPRVSLLQIACQFHS 88
           + +I++VSS DS EF  L  + TRS +IALDAEWKP  +    SSFP V+LLQ+AC+   
Sbjct: 4   NLKIYLVSSTDSSEFTHLKWSFTRSTIIALDAEWKPQHS--NTSSFPTVTLLQVACRL-- 63

Query: 89  DHRND-SVVFLLDLLSVPLSSVWDLLRDVFVSPHVLKLGFRFKQDLVYLSTTFCSHGGLS 148
            H  D S VFL+DL S+ L SVW+LL D+FVSP VLKLGFRFKQDLVYLS+TF  HG   
Sbjct: 64  SHATDVSDVFLIDLSSIHLPSVWELLNDMFVSPDVLKLGFRFKQDLVYLSSTFTQHGCEG 123

Query: 149 GLDRIEPFMDITSIYNHLQHKQNGRKLHKQTKSLAAICNEVLGFSLSKVCPFHFHILVCQ 208
           G   ++ ++DITSIYN+LQHK+ GRK  K  KSLAAIC E+L  SLSK            
Sbjct: 124 GFQEVKQYLDITSIYNYLQHKRFGRKAPKDIKSLAAICKEMLDISLSK------------ 183

Query: 209 FSDELQCSDWSFRPLTEEQIAYAAMDAHCLLEIFNVFCSKVLKEGLSVSE 258
              ELQCSDWS+RPLTEEQ  YAA DAHCLL+IF+VF    L EG++V +
Sbjct: 184 ---ELQCSDWSYRPLTEEQKLYAATDAHCLLQIFDVF-EAHLVEGITVQD 213

[Close]
BLAST of Lsi05G001170 vs. TAIR10
Match: AT1G56310.1 (AT1G56310.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 77.4 bits (189), Expect = 1.4e-14
Identity = 57/203 (28.08%), Postives = 95/203 (46.80%), Query Frame = 1 

Query: 42  EFNQLTHTLTRSHLIALDAEWKPLRTPDQHSSFPRVSLLQIACQFHSDHRNDSVVFLLDL 101
           E  + T  L    ++ +D EWKP        +  +VS++QI         +D+ +F+LDL
Sbjct: 367 ELRKATSFLEGCRVVGIDCEWKPNYIKGSKQN--KVSIMQIG--------SDTKIFILDL 426

Query: 102 LSV--PLSSVWD-LLRDVFVSPHVLKLGFRFKQDLVYLSTTFCSHGGLSGLDRIEPFMDI 161
           + +    S + D  L  +  S   LKLG+ F+ D+  L+    S+G L   +R +  +DI
Sbjct: 427 IKLYNDASEILDNCLSHILQSKSTLKLGYNFQCDIKQLAL---SYGDLKCFERYDMLLDI 486

Query: 162 TSIYNHLQHKQNGRKLHKQTKSLAAICNEVLGFSLSKVCPFHFHILVCQFSDELQCSDWS 221
            +++N            +    LA +  ++LG SL+K                 + SDW 
Sbjct: 487 QNVFN------------EPFGGLAGLTKKILGVSLNKT---------------RRNSDWE 529

Query: 222 FRPLTEEQIAYAAMDAHCLLEIF 242
            RPL++ Q+ YAA+DA  L+ IF
Sbjct: 547 QRPLSQNQLEYAALDAAVLIHIF 529

[Close]
BLAST of Lsi05G001170 vs. TAIR10
Match: AT2G32415.1 (AT2G32415.1 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain)

HSP 1 Score: 62.8 bits (151), Expect = 3.7e-10
Identity = 57/219 (26.03%), Postives = 89/219 (40.64%), Query Frame = 1 

Query: 42  EFNQLTHTLTRSHLIALDAEWKPLRTPDQHSSFPRVSLLQIACQFHSDHRNDSVVFLLDL 101
           +  +L   L +  + A+D E   LR     S     +L+QI     S H  D   FL+D 
Sbjct: 127 QLKELAEILAKEQVFAVDTEQHSLR-----SFLGFTALIQI-----STHEED---FLVD- 186

Query: 102 LSVPLSSVWDLLRDVFVSPHVLKLGFRFKQDLVYLSTTFCSHGGLSGLDRIEPFMDITSI 161
            ++ L  V  +LR VF  P++ K+      D+++L   F  +                 +
Sbjct: 187 -TIALHDVMSILRPVFSDPNICKVFHGADNDVIWLQRDFHIY-----------------V 246

Query: 162 YNHLQHKQNGRKLHKQTKSLAAICNEVLGFSLSKVCPFHFHILVCQFSDELQCSDWSFRP 221
            N     +    L K  +SLA +   V G + +K+               LQ  DW  RP
Sbjct: 247 VNMFDTAKACEVLSKPQRSLAYLLETVCGVATNKL---------------LQREDWRQRP 298

Query: 222 LTEEQIAYAAMDAHCLLEIFNVFCSKVLKEGLSVSEPWD 261
           L+EE + YA  DAH LL I +   +++ +     S P D
Sbjct: 307 LSEEMVRYARTDAHYLLYIADSLTTELKQLATDSSSPDD 298

[Close]
BLAST of Lsi05G001170 vs. NCBI nr
Match: gi|449456993|ref|XP_004146233.1| (PREDICTED: exonuclease mut-7 homolog [Cucumis sativus])

HSP 1 Score: 385.6 bits (989), Expect = 7.0e-104
Identity = 194/234 (82.91%), Postives = 203/234 (86.75%), Query Frame = 1 

Query: 21  MDSQNGRPSFEIHIVSSIDSPEFNQLTHTLTRSHLIALDAEWKPLRTPDQHSSFPRVSLL 80
           MDS   RP+FEIH+VSSIDSPEF  LTHTLTRSHLIALDAEWKPL+TPDQHSSFPRVSLL
Sbjct: 1   MDSHIARPAFEIHLVSSIDSPEFTLLTHTLTRSHLIALDAEWKPLQTPDQHSSFPRVSLL 60

Query: 81  QIACQFHSDHRNDSVVFLLDLLSVPLSSVWDLLRDVFVSPHVLKLGFRFKQDLVYLSTTF 140
           QIACQFHSDHRNDSV FLLDLLSVPLSS+W LLRDVFVSP+VLKLGFRFKQDLVYLSTTF
Sbjct: 61  QIACQFHSDHRNDSVAFLLDLLSVPLSSIWHLLRDVFVSPYVLKLGFRFKQDLVYLSTTF 120

Query: 141 CSH--GGLSGLDRIEPFMDITSIYNHLQHKQNGRKLHKQTKSLAAICNEVLGFSLSKVCP 200
            S+  GG+SGLDRIEPFMDI SIY HLQHKQ GRKLHKQ+KSL AIC+EVLGFSLSK   
Sbjct: 121 SSYGGGGVSGLDRIEPFMDIASIYYHLQHKQKGRKLHKQSKSLTAICSEVLGFSLSK--- 180

Query: 201 FHFHILVCQFSDELQCSDWSFRPLTEEQIAYAAMDAHCLLEIFNVFCSKVLKEG 253
                       ELQCSDWS RPLTEEQIAYAAMDAHCLLEIFNVF SKVLKEG
Sbjct: 181 ------------ELQCSDWSVRPLTEEQIAYAAMDAHCLLEIFNVFYSKVLKEG 219

[Close]
BLAST of Lsi05G001170 vs. NCBI nr
Match: gi|659111952|ref|XP_008455993.1| (PREDICTED: exonuclease mut-7 homolog [Cucumis melo])

HSP 1 Score: 383.6 bits (984), Expect = 2.7e-103
Identity = 193/233 (82.83%), Postives = 202/233 (86.70%), Query Frame = 1 

Query: 21  MDSQNGRPSFEIHIVSSIDSPEFNQLTHTLTRSHLIALDAEWKPLRTPDQHSSFPRVSLL 80
           MDS N  P+FEIH+VSSIDSPEF  LTHTLT SHLIALDAEWKPL+TPDQ SSFPRVSLL
Sbjct: 1   MDSHNAGPAFEIHVVSSIDSPEFTLLTHTLTHSHLIALDAEWKPLQTPDQRSSFPRVSLL 60

Query: 81  QIACQFHSDHRNDSVVFLLDLLSVPLSSVWDLLRDVFVSPHVLKLGFRFKQDLVYLSTTF 140
           QIACQFHSDHRNDSV FLLDLLSVPLSS+W LLRDVFVSP+VLKLGFRFKQDLVYLSTTF
Sbjct: 61  QIACQFHSDHRNDSVAFLLDLLSVPLSSIWHLLRDVFVSPYVLKLGFRFKQDLVYLSTTF 120

Query: 141 CSH-GGLSGLDRIEPFMDITSIYNHLQHKQNGRKLHKQTKSLAAICNEVLGFSLSKVCPF 200
            S+ GG+SGLDRIEPFMDI SIY HLQHKQ GRKLHKQ+KSLAAIC+EVLGFSLSK    
Sbjct: 121 SSYGGGVSGLDRIEPFMDIASIYYHLQHKQKGRKLHKQSKSLAAICSEVLGFSLSK---- 180

Query: 201 HFHILVCQFSDELQCSDWSFRPLTEEQIAYAAMDAHCLLEIFNVFCSKVLKEG 253
                      ELQCSDWS RPLTEEQIAYAAMDAHCLLEIFNVF SKVLKEG
Sbjct: 181 -----------ELQCSDWSVRPLTEEQIAYAAMDAHCLLEIFNVFYSKVLKEG 218

[Close]
BLAST of Lsi05G001170 vs. NCBI nr
Match: gi|596021512|ref|XP_007219013.1| (hypothetical protein PRUPE_ppa004292mg [Prunus persica])

HSP 1 Score: 297.7 bits (761), Expect = 1.9e-77
Identity = 154/240 (64.17%), Postives = 176/240 (73.33%), Query Frame = 1 

Query: 21  MDSQNGRPSFEIHIVSSIDSPEFNQLTHTLTRSHLIALDAEWKPLRTPDQHSSFPRVSLL 80
           MD +  RP  +IH+VSS DSPEF  LT +LTRS +IALDAEWKP+RT    SSFP VSLL
Sbjct: 1   MDPRYPRP-LKIHLVSSTDSPEFTDLTQSLTRSRIIALDAEWKPIRT--HQSSFPTVSLL 60

Query: 81  QIACQFHSD--HRNDSVVFLLDLLSVPLSSVWDLLRDVFVSPHVLKLGFRFKQDLVYLST 140
           Q+ACQ  SD    +DSVVFLLDL S+PL S+W+LLRD FVSP +LKLGFRFKQDL+YLS+
Sbjct: 61  QLACQLSSDSVESDDSVVFLLDLSSIPLPSIWELLRDAFVSPDILKLGFRFKQDLIYLSS 120

Query: 141 TFCSHGGLSGLDRIEPFMDITSIYNHLQHKQNGRKLHKQTKSLAAICNEVLGFSLSKVCP 200
           TF S G   G D++EPFMDITSIY+HLQH Q GRK  K  KSLA IC E+LG SLSK   
Sbjct: 121 TFSSQGCEQGFDKVEPFMDITSIYHHLQHSQPGRKTSKDIKSLATICKEILGISLSK--- 180

Query: 201 FHFHILVCQFSDELQCSDWSFRPLTEEQIAYAAMDAHCLLEIFNVFCSKVLKEGLSVSEP 259
                       ELQCSDWS RPLTEEQ  YAA+DA CLLEIFNVF +KV+KEG  +  P
Sbjct: 181 ------------ELQCSDWSCRPLTEEQKTYAAIDAQCLLEIFNVFQAKVIKEGSLIHSP 222

[Close]
BLAST of Lsi05G001170 vs. NCBI nr
Match: gi|694364580|ref|XP_009361331.1| (PREDICTED: exonuclease mut-7 homolog [Pyrus x bretschneideri])

HSP 1 Score: 296.2 bits (757), Expect = 5.6e-77
Identity = 155/244 (63.52%), Postives = 177/244 (72.54%), Query Frame = 1 

Query: 21  MDSQNGRPSFEIHIVSSIDSPEFNQLTHTLTRSHLIALDAEWKPLRTPDQHSSFPRVSLL 80
           MD Q  RP   I +VSS DSPEF  LT +LTR  +IALDAEWKP+RT    SSFP V LL
Sbjct: 11  MDPQ--RP-LNIQLVSSTDSPEFTNLTRSLTRCRIIALDAEWKPIRTRTPQSSFPTVLLL 70

Query: 81  QIACQF------HSDHRNDSVVFLLDLLSVPLSSVWDLLRDVFVSPHVLKLGFRFKQDLV 140
           Q+ACQ        SD  +DSVVFLLDL ++ L SVW+LLRD F+SP +LKLGFRFKQDL+
Sbjct: 71  QLACQLGSRLGGDSDESDDSVVFLLDLSTIHLPSVWELLRDAFISPDILKLGFRFKQDLI 130

Query: 141 YLSTTFCSHGGLSGLDRIEPFMDITSIYNHLQHKQNGRKLHKQTKSLAAICNEVLGFSLS 200
           YLS+TF S+G   G DR+EPFMDITS+YNHLQHKQ+GRK  KQ KSLA+IC EVLG SL+
Sbjct: 131 YLSSTFSSNGCEPGFDRVEPFMDITSMYNHLQHKQHGRKASKQIKSLASICKEVLGISLT 190

Query: 201 KVCPFHFHILVCQFSDELQCSDWSFRPLTEEQIAYAAMDAHCLLEIFNVFCSKVLKEGLS 259
           K               ELQCSDWS RPLTEEQ  YAAMDAHCL+EIFNVF +KV+KEG  
Sbjct: 191 K---------------ELQCSDWSCRPLTEEQKTYAAMDAHCLIEIFNVFQAKVIKEGKL 236

[Close]
BLAST of Lsi05G001170 vs. NCBI nr
Match: gi|645258040|ref|XP_008234697.1| (PREDICTED: uncharacterized protein LOC103333607 [Prunus mume])

HSP 1 Score: 294.3 bits (752), Expect = 2.1e-76
Identity = 153/240 (63.75%), Postives = 174/240 (72.50%), Query Frame = 1 

Query: 21  MDSQNGRPSFEIHIVSSIDSPEFNQLTHTLTRSHLIALDAEWKPLRTPDQHSSFPRVSLL 80
           MD +  RP  +IH+VSS DSPEF  LT  LTRS +IALDAEWKP+RT    SSFP VSLL
Sbjct: 1   MDPRYPRP-LKIHLVSSTDSPEFTDLTRFLTRSRIIALDAEWKPIRT--LQSSFPTVSLL 60

Query: 81  QIACQFHSD--HRNDSVVFLLDLLSVPLSSVWDLLRDVFVSPHVLKLGFRFKQDLVYLST 140
           Q+ACQ  SD    +DSVVFLLDL S+PL S+W+LLRD FVSP +LKLGFRFKQDL+YLS+
Sbjct: 61  QLACQLSSDSGESDDSVVFLLDLSSIPLPSIWELLRDAFVSPDILKLGFRFKQDLIYLSS 120

Query: 141 TFCSHGGLSGLDRIEPFMDITSIYNHLQHKQNGRKLHKQTKSLAAICNEVLGFSLSKVCP 200
           TF S G   G D++EPFMDITSIY+HLQH Q GRK  K  KSLA IC E+LG SLSK   
Sbjct: 121 TFSSQGCEQGFDKVEPFMDITSIYHHLQHSQPGRKTSKNIKSLATICKEILGISLSK--- 180

Query: 201 FHFHILVCQFSDELQCSDWSFRPLTEEQIAYAAMDAHCLLEIFNVFCSKVLKEGLSVSEP 259
                       ELQCSDWS RPLTEEQ  YAA+DA CLLEIFNVF +K +KEG  +  P
Sbjct: 181 ------------ELQCSDWSCRPLTEEQKTYAAIDAQCLLEIFNVFQAKAIKEGSLIHSP 222

The following BLAST results are available for this feature:
BLAST of Lsi05G001170 vs. Swiss-Prot
Match NameE-valueIdentityDescription
MUT7_AEDAE2.8e-1228.24Exonuclease mut-7 homolog OS=Aedes aegypti GN=AAEL005527 PE=3 SV=1[more]
MUT7_HUMAN4.8e-1226.78Exonuclease mut-7 homolog OS=Homo sapiens GN=EXD3 PE=2 SV=3[more]
MUT7_DROME2.6e-1027.80Exonuclease mut-7 homolog OS=Drosophila melanogaster GN=Nbr PE=1 SV=1[more]
RP6L3_ARATH7.2e-0827.14Protein RRP6-like 3 OS=Arabidopsis thaliana GN=RRP6L3 PE=2 SV=1[more]
MUT7_CAEEL1.4e-0624.75Exonuclease mut-7 OS=Caenorhabditis elegans GN=mut-7 PE=1 SV=1[more]
BLAST of Lsi05G001170 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L6Q0_CUCSA4.9e-10482.91Uncharacterized protein OS=Cucumis sativus GN=Csa_3G238160 PE=4 SV=1[more]
M5X298_PRUPE1.3e-7764.17Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004292mg PE=4 SV=1[more]
W9S1T5_9ROSA5.6e-7663.87Putative exonuclease mut-7-like protein OS=Morus notabilis GN=L484_011852 PE=4 S... [more]
A0A067K3P6_JATCU5.8e-7363.20Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15506 PE=4 SV=1[more]
A0A067EWW6_CITSI7.1e-7159.75Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g009783mg PE=4 SV=1[more]
BLAST of Lsi05G001170 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G24340.11.2e-6457.39 3'-5' exonuclease domain-containing protein[more]
AT1G56310.11.4e-1428.08 Polynucleotidyl transferase, ribonuclease H-like superfamily protein[more]
AT2G32415.13.7e-1026.03 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC d... [more]
BLAST of Lsi05G001170 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449456993|ref|XP_004146233.1|7.0e-10482.91PREDICTED: exonuclease mut-7 homolog [Cucumis sativus][more]
gi|659111952|ref|XP_008455993.1|2.7e-10382.83PREDICTED: exonuclease mut-7 homolog [Cucumis melo][more]
gi|596021512|ref|XP_007219013.1|1.9e-7764.17hypothetical protein PRUPE_ppa004292mg [Prunus persica][more]
gi|694364580|ref|XP_009361331.1|5.6e-7763.52PREDICTED: exonuclease mut-7 homolog [Pyrus x bretschneideri][more]
gi|645258040|ref|XP_008234697.1|2.1e-7663.75PREDICTED: uncharacterized protein LOC103333607 [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:00084083'-5' exonuclease activity
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_sf
IPR0025623'-5'_exonuclease_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0006139 nucleobase-containing compound metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0008408 3'-5' exonuclease activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004386 helicase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G001170.1Lsi05G001170.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR0025623'-5' exonuclease domainPFAMPF01612DNA_pol_A_exo1coord: 40..247
score: 1.4
IPR0025623'-5' exonuclease domainSMARTSM0047435exoneu6coord: 32..249
score: 7.
IPR012337Ribonuclease H-like domainGENE3DG3DSA:3.30.420.10coord: 47..243
score: 1.5
IPR012337Ribonuclease H-like domainunknownSSF53098Ribonuclease H-likecoord: 28..253
score: 1.3
NoneNo IPR availablePANTHERPTHR12124POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATEDcoord: 211..257
score: 4.1E-78coord: 13..195
score: 4.1
NoneNo IPR availablePANTHERPTHR12124:SF383'-5' EXONUCLEASE DOMAIN-CONTAINING PROTEINcoord: 211..257
score: 4.1E-78coord: 13..195
score: 4.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi05G001170Csa3G238160Cucumber (Chinese Long) v2culsiB211
Lsi05G001170CSPI03G19630Wild cucumber (PI 183967)cpilsiB209
Lsi05G001170Cucsa.032320Cucumber (Gy14) v1cgylsiB003
Lsi05G001170CmaCh16G000350Cucurbita maxima (Rimu)cmalsiB318
Lsi05G001170CmoCh16G000410Cucurbita moschata (Rifu)cmolsiB307
Lsi05G001170Cla004272Watermelon (97103) v1lsiwmB361
Lsi05G001170MELO3C019378Melon (DHL92) v3.5.1lsimeB368
Lsi05G001170MELO3C019378.2Melon (DHL92) v3.6.1lsimedB384
Lsi05G001170Cla97C05G091410Watermelon (97103) v2lsiwmbB329
Lsi05G001170Bhi01G001131Wax gourdlsiwgoB431
Lsi05G001170Cp4.1LG14g06890Cucurbita pepo (Zucchini)cpelsiB178
Lsi05G001170CsGy3G019560Cucumber (Gy14) v2cgyblsiB198
Lsi05G001170Carg15054Silver-seed gourdcarlsiB904
Lsi05G001170CsaV3_3G019690Cucumber (Chinese Long) v3cuclsiB230
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi05G001170Cucurbita maxima (Rimu)cmalsiB584
Lsi05G001170Cucurbita moschata (Rifu)cmolsiB278
Lsi05G001170Cucurbita moschata (Rifu)cmolsiB373
Lsi05G001170Cucurbita moschata (Rifu)cmolsiB370
Lsi05G001170Cucurbita moschata (Rifu)cmolsiB559
Lsi05G001170Cucurbita pepo (Zucchini)cpelsiB037
Lsi05G001170Cucurbita pepo (Zucchini)cpelsiB154
Lsi05G001170Cucurbita pepo (Zucchini)cpelsiB622
Lsi05G001170Wild cucumber (PI 183967)cpilsiB381
Lsi05G001170Cucumber (Chinese Long) v2culsiB379
Lsi05G001170Melon (DHL92) v3.5.1lsimeB337
Lsi05G001170Watermelon (Charleston Gray)lsiwcgB324
Lsi05G001170Watermelon (Charleston Gray)lsiwcgB332
Lsi05G001170Watermelon (97103) v1lsiwmB376
Lsi05G001170Cucumber (Gy14) v2cgyblsiB343
Lsi05G001170Melon (DHL92) v3.6.1lsimedB352
Lsi05G001170Silver-seed gourdcarlsiB460
Lsi05G001170Silver-seed gourdcarlsiB490
Lsi05G001170Cucumber (Chinese Long) v3cuclsiB401
Lsi05G001170Watermelon (97103) v2lsiwmbB318
Lsi05G001170Watermelon (97103) v2lsiwmbB339
Lsi05G001170Wax gourdlsiwgoB418
Lsi05G001170Wax gourdlsiwgoB442
Lsi05G001170Bottle gourd (USVL1VR-Ls)lsilsiB013
Lsi05G001170Bottle gourd (USVL1VR-Ls)lsilsiB158
Lsi05G001170Cucumber (Gy14) v1cgylsiB348
Lsi05G001170Cucurbita maxima (Rimu)cmalsiB289
Lsi05G001170Cucurbita maxima (Rimu)cmalsiB385
Lsi05G001170Cucurbita maxima (Rimu)cmalsiB388