Cla004272 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla004272
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	At5g24340-like protein (Fragment) (AHRD V1 -- Q3YI79_ARALY); contains Interpro domain(s) IPR002562 3'-5' exonuclease
Location	Chr5 : 9411375 .. 9412436 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTCTTCTTATGGATTCCCAGAACGGCCGGCCTTCCTTTGAAATCCACATTGTCTCTTCTATCGACTCTCCCGAGTTCAGTCAGCTAACTCACACACTGACTCGCTCTCACCTTATTGCCCTCGACGCCGAGTGGAAGCCCCTTCGAACTCCTGATCAAAATTCTTCATTCCCCAGAGTTTCTCTTCTCCAGATCGCTTGCCAATTCCACTCAGACCACCGGAATGATTCCGTGGTTTTTCTGCTCGACCTACTCTCCCTTCCTTTATCCTCAATTTGGGATTTGTTAAGGGATGTTTTTGTTTCACCCCATGTTTTGAAATTGGGTTTTCGATTTAAGCAAGATTTGGTTTACTTGTCCACTACTTTCTGCTCCTATGGCGGCGGCGGCGGCCTCTCTGGCCTTGATCGTGTAAGTGTTTAAATCTGGATTAAAATTTTGTTTTGTTTGAGTTCTGAAGTTTCTAGTACAGTATTCTAAATTTTCTCCTTAAATGTATTGTTTTAGATTGAACCTTTTATGGATATTACGAGTATTTACAATCATCTTCAGCATAAGCAAAATGGAAGAAAATTACATAAGCAAACTAAGAGTCTTGCAGCTATCTGCAGTGAAATACTGGGATTCTCTCTTTCGAAGGTTTGGCTATTCCATTTCCACATGTAACTAGTTTGACGTTCTTTAACATACTTCAGATTACCATTTTTCGTTTATATACTGTTTACGCTTTCCATATGTAGTCTTGTTTGTCAATTCAGTGATGTCCTATAACCAAACCACTGCGTTCTAGCGGTCTTTTTGAGCTTTCTCTTGAATCTTACCAATTAGCTAAGGCTCTTCCTCAAGTCAATATGACGAATTACTTTTGTACTAATTATGGATCTTGATTTATATCTTCTTTAGGAACTTCAATGTAGTGATTGGTCATTTCGTCCCCTCACAGAAGAGCAGATAGCATATGCAGCCATGGATGCCCACTGCTTGCTTGAAATATTTAATGTCTTCTACTCCAAGGTTGTTAAAGAAGGTCTGCAAGTGTCTGAACCTTGGGATTTCTAG

mRNA sequence

ATGTGTCTTCTTATGGATTCCCAGAACGGCCGGCCTTCCTTTGAAATCCACATTGTCTCTTCTATCGACTCTCCCGAGTTCAGTCAGCTAACTCACACACTGACTCGCTCTCACCTTATTGCCCTCGACGCCGAGTGGAAGCCCCTTCGAACTCCTGATCAAAATTCTTCATTCCCCAGAGTTTCTCTTCTCCAGATCGCTTGCCAATTCCACTCAGACCACCGGAATGATTCCGTGGTTTTTCTGCTCGACCTACTCTCCCTTCCTTTATCCTCAATTTGGGATTTGTTAAGGGATGTTTTTGTTTCACCCCATGTTTTGAAATTGGGTTTTCGATTTAAGCAAGATTTGGTTTACTTGTCCACTACTTTCTGCTCCTATGGCGGCGGCGGCGGCCTCTCTGGCCTTGATCGTGAACTTCAATGTAGTGATTGGTCATTTCGTCCCCTCACAGAAGAGCAGATAGCATATGCAGCCATGGATGCCCACTGCTTGCTTGAAATATTTAATGTCTTCTACTCCAAGGTTGTTAAAGAAGGTCTGCAAGTGTCTGAACCTTGGGATTTCTAG

Coding sequence (CDS)

ATGTGTCTTCTTATGGATTCCCAGAACGGCCGGCCTTCCTTTGAAATCCACATTGTCTCTTCTATCGACTCTCCCGAGTTCAGTCAGCTAACTCACACACTGACTCGCTCTCACCTTATTGCCCTCGACGCCGAGTGGAAGCCCCTTCGAACTCCTGATCAAAATTCTTCATTCCCCAGAGTTTCTCTTCTCCAGATCGCTTGCCAATTCCACTCAGACCACCGGAATGATTCCGTGGTTTTTCTGCTCGACCTACTCTCCCTTCCTTTATCCTCAATTTGGGATTTGTTAAGGGATGTTTTTGTTTCACCCCATGTTTTGAAATTGGGTTTTCGATTTAAGCAAGATTTGGTTTACTTGTCCACTACTTTCTGCTCCTATGGCGGCGGCGGCGGCCTCTCTGGCCTTGATCGTGAACTTCAATGTAGTGATTGGTCATTTCGTCCCCTCACAGAAGAGCAGATAGCATATGCAGCCATGGATGCCCACTGCTTGCTTGAAATATTTAATGTCTTCTACTCCAAGGTTGTTAAAGAAGGTCTGCAAGTGTCTGAACCTTGGGATTTCTAG

Protein sequence

MCLLMDSQNGRPSFEIHIVSSIDSPEFSQLTHTLTRSHLIALDAEWKPLRTPDQNSSFPRVSLLQIACQFHSDHRNDSVVFLLDLLSLPLSSIWDLLRDVFVSPHVLKLGFRFKQDLVYLSTTFCSYGGGGGLSGLDRELQCSDWSFRPLTEEQIAYAAMDAHCLLEIFNVFYSKVVKEGLQVSEPWDF

Homology

[Close]

BLAST of Cla004272 vs. TrEMBL
Match: A0A0A0L6Q0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G238160 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 2.9e-66
Identity = 142/220 (64.55%), Postives = 156/220 (70.91%), Query Frame = 1


Query: 5   MDSQNGRPSFEIHIVSSIDSPEFSQLTHTLTRSHLIALDAEWKPLRTPDQNSSFPRVSLL 64
           MDS   RP+FEIH+VSSIDSPEF+ LTHTLTRSHLIALDAEWKPL+TPDQ+SSFPRVSLL
Sbjct: 1   MDSHIARPAFEIHLVSSIDSPEFTLLTHTLTRSHLIALDAEWKPLQTPDQHSSFPRVSLL 60

Query: 65  QIACQFHSDHRNDSVVFLLDLLSLPLSSIWDLLRDVFVSPHVLKLGFRFKQDLVYLSTTF 124
           QIACQFHSDHRNDSV FLLDLLS+PLSSIW LLRDVFVSP+VLKLGFRFKQDLVYLSTTF
Sbjct: 61  QIACQFHSDHRNDSVAFLLDLLSVPLSSIWHLLRDVFVSPYVLKLGFRFKQDLVYLSTTF 120

Query: 125 CSYGGGGGLSGLD---------------------RELQCSDWSFRPLTEEQIAYA----- 181
            SY GGGG+SGLD                     R+L     S   +  E + ++     
Sbjct: 121 SSY-GGGGVSGLDRIEPFMDIASIYYHLQHKQKGRKLHKQSKSLTAICSEVLGFSLSKEL 180

[Close]

BLAST of Cla004272 vs. TrEMBL
Match: M5X298_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004292mg PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.5e-41
Identity = 110/225 (48.89%), Postives = 135/225 (60.00%), Query Frame = 1


Query: 5   MDSQNGRPSFEIHIVSSIDSPEFSQLTHTLTRSHLIALDAEWKPLRTPDQNSSFPRVSLL 64
           MD +  RP  +IH+VSS DSPEF+ LT +LTRS +IALDAEWKP+RT    SSFP VSLL
Sbjct: 1   MDPRYPRP-LKIHLVSSTDSPEFTDLTQSLTRSRIIALDAEWKPIRT--HQSSFPTVSLL 60

Query: 65  QIACQFHSD--HRNDSVVFLLDLLSLPLSSIWDLLRDVFVSPHVLKLGFRFKQDLVYLST 124
           Q+ACQ  SD    +DSVVFLLDL S+PL SIW+LLRD FVSP +LKLGFRFKQDL+YLS+
Sbjct: 61  QLACQLSSDSVESDDSVVFLLDLSSIPLPSIWELLRDAFVSPDILKLGFRFKQDLIYLSS 120

Query: 125 TFCSYGGGGG---------LSGLDRELQCSD---------WSFRPLTEEQIAYA------ 184
           TF S G   G         ++ +   LQ S           S   + +E +  +      
Sbjct: 121 TFSSQGCEQGFDKVEPFMDITSIYHHLQHSQPGRKTSKDIKSLATICKEILGISLSKELQ 180

Query: 185 -----------------AMDAHCLLEIFNVFYSKVVKEGLQVSEP 187
                            A+DA CLLEIFNVF +KV+KEG  +  P
Sbjct: 181 CSDWSCRPLTEEQKTYAAIDAQCLLEIFNVFQAKVIKEGSLIHSP 222

[Close]

BLAST of Cla004272 vs. TrEMBL
Match: W9S1T5_9ROSA (Putative exonuclease mut-7-like protein OS=Morus notabilis GN=L484_011852 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 5.6e-41
Identity = 105/223 (47.09%), Postives = 130/223 (58.30%), Query Frame = 1


Query: 5   MDSQNGRPSFEIHIVSSIDSPEFSQLTHTLTRSHLIALDAEWKPLRTPDQNSSFPRVSLL 64
           MD  N +P F+IH+VSS +SPEF+ LT  LTRS LIA+DAEWKP R   Q +  P VSLL
Sbjct: 1   MDLGNQKP-FKIHVVSSTESPEFTHLTRALTRSLLIAIDAEWKPTRAGQQQTCLPTVSLL 60

Query: 65  QIACQFH------SDHRNDSVVFLLDLLSLPLSSIWDLLRDVFVSPHVLKLGFRFKQDLV 124
           Q+ACQ        SD   +SVVFL+DLL +PL SIW+LLRDVFVSP +LKLGFRFKQDLV
Sbjct: 61  QLACQLDPRLGGDSDESENSVVFLVDLLLIPLPSIWELLRDVFVSPDILKLGFRFKQDLV 120

Query: 125 YLSTTFCSYGGGGGLSGLD------------------RELQCSDWSFRPLTEEQIAYA-- 181
           YLS+TF S+G   G   ++                  R++     S   + +E +  +  
Sbjct: 121 YLSSTFSSHGCNLGFDRIEPFLDITSVYKDLQHKQPGRKMSKDIKSLATICKEVLGISLS 180

[Close]

BLAST of Cla004272 vs. TrEMBL
Match: A0A067K3P6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15506 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.6e-38
Identity = 102/216 (47.22%), Postives = 128/216 (59.26%), Query Frame = 1


Query: 5   MDSQNGRPSFEIHIVSSIDSPEFSQLTHTLTRSHLIALDAEWKPLRTPDQNSSFPRVSLL 64
           MD  N +P  +IH+VSS DSPEF+ LT  LTRS +I LDAEWKP+RT  + S+FP VSLL
Sbjct: 1   MDPPNQKP-LKIHLVSSADSPEFTHLTWALTRSTIIGLDAEWKPIRT--KQSAFPNVSLL 60

Query: 65  QIACQFHSDHRNDSVVFLLDLLSLPLSSIWDLLRDVFVSPHVLKLGFRFKQDLVYLSTTF 124
           Q+ACQ    H + S VFLLDL S+ LS IWDLL++VF+SP +LKLGFRFKQDLV+LS+TF
Sbjct: 61  QLACQL-GWHSDQSPVFLLDLSSITLSLIWDLLKEVFISPDILKLGFRFKQDLVFLSSTF 120

Query: 125 CSYGGGGG---------LSGLDRELQCSDW---------SFRPLTEEQIAYA-------- 180
           CS G   G         ++ +   LQ   W         S   +  E +  +        
Sbjct: 121 CSQGCDPGFDMVEPYLDITSIYHFLQHKQWGKKIPKETKSLATICNELLGISLSKELQCS 180

[Close]

BLAST of Cla004272 vs. TrEMBL
Match: A0A0D2QDK8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G202600 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 9.2e-36
Identity = 93/208 (44.71%), Postives = 123/208 (59.13%), Query Frame = 1


Query: 15  EIHIVSSIDSPEFSQLTHTLTRSHLIALDAEWKPLRTPDQNSSFPRVSLLQIACQFHSDH 74
           + HIVSSIDS EF+ LT TL++S +I LDAEWKP+R+  Q S+FP V+LLQ+ACQ   D 
Sbjct: 2   DTHIVSSIDSSEFTHLTRTLSKSTVIGLDAEWKPVRS--QRSTFPTVTLLQLACQIGDDS 61

Query: 75  R--NDSVVFLLDLLSLPLSSIWDLLRDVFVSPHVLKLGFRFKQDLVYLSTTFCSYGGGGG 134
              ++SVVFLLDL SLPL SIW+L++DV VSP +LKLGF+FKQDL+YLS+TF + GG  G
Sbjct: 62  AGWDESVVFLLDLSSLPLPSIWELIKDVLVSPDILKLGFKFKQDLIYLSSTFRAQGGNPG 121

Query: 135 LSGLD-----------------RELQCSDWSFRPLTEEQIAYA----------------- 181
              ++                 +++     S   + EE +                    
Sbjct: 122 FDQVEPYMDITNIYKFLQHKQGKKISKDTKSLSAICEEILGLHLSKELQCSDWSHRPLTE 181

[Close]

BLAST of Cla004272 vs. NCBI nr
Match: gi|449456993|ref|XP_004146233.1| (PREDICTED: exonuclease mut-7 homolog [Cucumis sativus])

HSP 1 Score: 259.6 bits (662), Expect = 4.2e-66
Identity = 142/220 (64.55%), Postives = 156/220 (70.91%), Query Frame = 1


Query: 5   MDSQNGRPSFEIHIVSSIDSPEFSQLTHTLTRSHLIALDAEWKPLRTPDQNSSFPRVSLL 64
           MDS   RP+FEIH+VSSIDSPEF+ LTHTLTRSHLIALDAEWKPL+TPDQ+SSFPRVSLL
Sbjct: 1   MDSHIARPAFEIHLVSSIDSPEFTLLTHTLTRSHLIALDAEWKPLQTPDQHSSFPRVSLL 60

Query: 65  QIACQFHSDHRNDSVVFLLDLLSLPLSSIWDLLRDVFVSPHVLKLGFRFKQDLVYLSTTF 124
           QIACQFHSDHRNDSV FLLDLLS+PLSSIW LLRDVFVSP+VLKLGFRFKQDLVYLSTTF
Sbjct: 61  QIACQFHSDHRNDSVAFLLDLLSVPLSSIWHLLRDVFVSPYVLKLGFRFKQDLVYLSTTF 120

Query: 125 CSYGGGGGLSGLD---------------------RELQCSDWSFRPLTEEQIAYA----- 181
            SY GGGG+SGLD                     R+L     S   +  E + ++     
Sbjct: 121 SSY-GGGGVSGLDRIEPFMDIASIYYHLQHKQKGRKLHKQSKSLTAICSEVLGFSLSKEL 180

[Close]

BLAST of Cla004272 vs. NCBI nr
Match: gi|659111952|ref|XP_008455993.1| (PREDICTED: exonuclease mut-7 homolog [Cucumis melo])

HSP 1 Score: 255.8 bits (652), Expect = 6.1e-65
Identity = 140/220 (63.64%), Postives = 153/220 (69.55%), Query Frame = 1


Query: 5   MDSQNGRPSFEIHIVSSIDSPEFSQLTHTLTRSHLIALDAEWKPLRTPDQNSSFPRVSLL 64
           MDS N  P+FEIH+VSSIDSPEF+ LTHTLT SHLIALDAEWKPL+TPDQ SSFPRVSLL
Sbjct: 1   MDSHNAGPAFEIHVVSSIDSPEFTLLTHTLTHSHLIALDAEWKPLQTPDQRSSFPRVSLL 60

Query: 65  QIACQFHSDHRNDSVVFLLDLLSLPLSSIWDLLRDVFVSPHVLKLGFRFKQDLVYLSTTF 124
           QIACQFHSDHRNDSV FLLDLLS+PLSSIW LLRDVFVSP+VLKLGFRFKQDLVYLSTTF
Sbjct: 61  QIACQFHSDHRNDSVAFLLDLLSVPLSSIWHLLRDVFVSPYVLKLGFRFKQDLVYLSTTF 120

Query: 125 CSYGGGGGLSGLD---------------------RELQCSDWSFRPLTEEQIAYA----- 181
            SY  GGG+SGLD                     R+L     S   +  E + ++     
Sbjct: 121 SSY--GGGVSGLDRIEPFMDIASIYYHLQHKQKGRKLHKQSKSLAAICSEVLGFSLSKEL 180

[Close]

BLAST of Cla004272 vs. NCBI nr
Match: gi|672133765|ref|XP_008790517.1| (PREDICTED: uncharacterized protein LOC103707705 isoform X2 [Phoenix dactylifera])

HSP 1 Score: 184.1 bits (466), Expect = 2.2e-43
Identity = 107/203 (52.71%), Postives = 132/203 (65.02%), Query Frame = 1


Query: 5   MDSQNGRPS-FEIHIVSSIDSPEFSQLTHTLTRSHLIALDAEWKPLRT------------ 64
           M+S   RP  FEIHIV++ DSP FS L   L RS ++ LDAEWKP R             
Sbjct: 35  MESSKIRPRPFEIHIVTAADSPAFSLLRWALHRSPVVGLDAEWKPSRNNYHQYGESEGGG 94

Query: 65  ------PDQNSSFPRVSLLQIACQFHSDHRN----DSVVFLLDLLSLPLSSIWDLLRDVF 124
                 P +  SFP V LLQIAC+   +  +    DS VFL+DLLS+PL +++++LR++F
Sbjct: 95  GEATSAPGRTPSFPTVLLLQIACRVRREPSDPAVGDSPVFLVDLLSVPLPALYEVLREMF 154

Query: 125 VSPHVLKLGFRFKQDLVYLSTTFCSYGGGGGLSGLDRELQCSDWSFRPLTEEQIAYAAMD 184
           V+P VLKLGFRFKQDLVYLS+TF S    G   G DRELQCSDWS RPL+E+QI YAA D
Sbjct: 155 VAPSVLKLGFRFKQDLVYLSSTFSSQ---GCRPGFDRELQCSDWSCRPLSEDQILYAASD 214

[Close]

BLAST of Cla004272 vs. NCBI nr
Match: gi|596021512|ref|XP_007219013.1| (hypothetical protein PRUPE_ppa004292mg [Prunus persica])

HSP 1 Score: 177.6 bits (449), Expect = 2.1e-41
Identity = 110/225 (48.89%), Postives = 135/225 (60.00%), Query Frame = 1


Query: 5   MDSQNGRPSFEIHIVSSIDSPEFSQLTHTLTRSHLIALDAEWKPLRTPDQNSSFPRVSLL 64
           MD +  RP  +IH+VSS DSPEF+ LT +LTRS +IALDAEWKP+RT    SSFP VSLL
Sbjct: 1   MDPRYPRP-LKIHLVSSTDSPEFTDLTQSLTRSRIIALDAEWKPIRT--HQSSFPTVSLL 60

Query: 65  QIACQFHSD--HRNDSVVFLLDLLSLPLSSIWDLLRDVFVSPHVLKLGFRFKQDLVYLST 124
           Q+ACQ  SD    +DSVVFLLDL S+PL SIW+LLRD FVSP +LKLGFRFKQDL+YLS+
Sbjct: 61  QLACQLSSDSVESDDSVVFLLDLSSIPLPSIWELLRDAFVSPDILKLGFRFKQDLIYLSS 120

Query: 125 TFCSYGGGGG---------LSGLDRELQCSD---------WSFRPLTEEQIAYA------ 184
           TF S G   G         ++ +   LQ S           S   + +E +  +      
Sbjct: 121 TFSSQGCEQGFDKVEPFMDITSIYHHLQHSQPGRKTSKDIKSLATICKEILGISLSKELQ 180

Query: 185 -----------------AMDAHCLLEIFNVFYSKVVKEGLQVSEP 187
                            A+DA CLLEIFNVF +KV+KEG  +  P
Sbjct: 181 CSDWSCRPLTEEQKTYAAIDAQCLLEIFNVFQAKVIKEGSLIHSP 222

[Close]

BLAST of Cla004272 vs. NCBI nr
Match: gi|703147990|ref|XP_010109230.1| (putative exonuclease mut-7-like protein [Morus notabilis])

HSP 1 Score: 175.6 bits (444), Expect = 8.0e-41
Identity = 105/223 (47.09%), Postives = 130/223 (58.30%), Query Frame = 1


Query: 5   MDSQNGRPSFEIHIVSSIDSPEFSQLTHTLTRSHLIALDAEWKPLRTPDQNSSFPRVSLL 64
           MD  N +P F+IH+VSS +SPEF+ LT  LTRS LIA+DAEWKP R   Q +  P VSLL
Sbjct: 1   MDLGNQKP-FKIHVVSSTESPEFTHLTRALTRSLLIAIDAEWKPTRAGQQQTCLPTVSLL 60

Query: 65  QIACQFH------SDHRNDSVVFLLDLLSLPLSSIWDLLRDVFVSPHVLKLGFRFKQDLV 124
           Q+ACQ        SD   +SVVFL+DLL +PL SIW+LLRDVFVSP +LKLGFRFKQDLV
Sbjct: 61  QLACQLDPRLGGDSDESENSVVFLVDLLLIPLPSIWELLRDVFVSPDILKLGFRFKQDLV 120

Query: 125 YLSTTFCSYGGGGGLSGLD------------------RELQCSDWSFRPLTEEQIAYA-- 181
           YLS+TF S+G   G   ++                  R++     S   + +E +  +  
Sbjct: 121 YLSSTFSSHGCNLGFDRIEPFLDITSVYKDLQHKQPGRKMSKDIKSLATICKEVLGISLS 180

The following BLAST results are available for this feature:

BLAST of Cla004272 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6Q0_CUCSA	2.9e-66	64.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G238160 PE=4 SV=1	[more]
M5X298_PRUPE	1.5e-41	48.89	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004292mg PE=4 SV=1	[more]
W9S1T5_9ROSA	5.6e-41	47.09	Putative exonuclease mut-7-like protein OS=Morus notabilis GN=L484_011852 PE=4 S...	[more]
A0A067K3P6_JATCU	2.6e-38	47.22	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15506 PE=4 SV=1	[more]
A0A0D2QDK8_GOSRA	9.2e-36	44.71	Uncharacterized protein OS=Gossypium raimondii GN=B456_006G202600 PE=4 SV=1	[more]

BLAST of Cla004272 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449456993\|ref\|XP_004146233.1\|	4.2e-66	64.55	PREDICTED: exonuclease mut-7 homolog [Cucumis sativus]	[more]
gi\|659111952\|ref\|XP_008455993.1\|	6.1e-65	63.64	PREDICTED: exonuclease mut-7 homolog [Cucumis melo]	[more]
gi\|672133765\|ref\|XP_008790517.1\|	2.2e-43	52.71	PREDICTED: uncharacterized protein LOC103707705 isoform X2 [Phoenix dactylifera]	[more]
gi\|596021512\|ref\|XP_007219013.1\|	2.1e-41	48.89	hypothetical protein PRUPE_ppa004292mg [Prunus persica]	[more]
gi\|703147990\|ref\|XP_010109230.1\|	8.0e-41	47.09	putative exonuclease mut-7-like protein [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002562	3'-5'_exonuclease_dom
IPR012337	RNaseH-like_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0008408	3'-5' exonuclease activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006139	nucleobase-containing compound metabolic process

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006139	nucleobase-containing compound metabolic process
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008408	3'-5' exonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0004527	exonuclease activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla004272	Cla004272.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002562	3'-5' exonuclease domain	PFAM	PF01612	DNA_pol_A_exo1	coord: 25..124 score: 2.2E-5coord: 137..175 score: 1.
IPR012337	Ribonuclease H-like domain	GENE3D	G3DSA:3.30.420.10		coord: 138..172 score: 7.
IPR012337	Ribonuclease H-like domain	unknown	SSF53098	Ribonuclease H-like	coord: 12..181 score: 1.39
None	No IPR available	PANTHER	PTHR12124	POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED	coord: 14..185 score: 3.0
None	No IPR available	PANTHER	PTHR12124:SF38	3'-5' EXONUCLEASE DOMAIN-CONTAINING PROTEIN	coord: 14..185 score: 3.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla004272	Cla97C05G091410	Watermelon (97103) v2	wmwmbB206
Cla004272	Csa3G238160	Cucumber (Chinese Long) v2	cuwmB243
Cla004272	MELO3C019378	Melon (DHL92) v3.5.1	mewmB461
Cla004272	CSPI03G19630	Wild cucumber (PI 183967)	cpiwmB242
Cla004272	Cucsa.032320	Cucumber (Gy14) v1	cgywmB002
Cla004272	CmaCh16G000350	Cucurbita maxima (Rimu)	cmawmB316
Cla004272	CmoCh16G000410	Cucurbita moschata (Rifu)	cmowmB310
Cla004272	Lsi05G001170	Bottle gourd (USVL1VR-Ls)	lsiwmB361
Cla004272	Cp4.1LG14g06890	Cucurbita pepo (Zucchini)	cpewmB227
Cla004272	CsGy3G019560	Cucumber (Gy14) v2	cgybwmB229
Cla004272	MELO3C019378.2	Melon (DHL92) v3.6.1	medwmB448
Cla004272	Carg15054	Silver-seed gourd	carwmB0990
Cla004272	CsaV3_3G019690	Cucumber (Chinese Long) v3	cucwmB252
Cla004272	Bhi01G001131	Wax gourd	wgowmB202

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla004272	Cucurbita pepo (Zucchini)	cpewmB032
Cla004272	Cucurbita pepo (Zucchini)	cpewmB179
Cla004272	Cucurbita pepo (Zucchini)	cpewmB705
Cla004272	Bottle gourd (USVL1VR-Ls)	lsiwmB023
Cla004272	Bottle gourd (USVL1VR-Ls)	lsiwmB364
Cla004272	Cucumber (Gy14) v2	cgybwmB238
Cla004272	Cucumber (Gy14) v2	cgybwmB379
Cla004272	Melon (DHL92) v3.6.1	medwmB014
Cla004272	Melon (DHL92) v3.6.1	medwmB456
Cla004272	Silver-seed gourd	carwmB0503
Cla004272	Silver-seed gourd	carwmB0536
Cla004272	Cucumber (Chinese Long) v3	cucwmB430
Cla004272	Watermelon (97103) v2	wmwmbB192
Cla004272	Watermelon (97103) v2	wmwmbB210
Cla004272	Wax gourd	wgowmB063
Cla004272	Watermelon (97103) v1	wmwmB118
Cla004272	Watermelon (97103) v1	wmwmB125
Cla004272	Cucumber (Gy14) v1	cgywmB397
Cla004272	Cucumber (Gy14) v1	cgywmB477
Cla004272	Cucurbita maxima (Rimu)	cmawmB269
Cla004272	Cucurbita maxima (Rimu)	cmawmB373
Cla004272	Cucurbita maxima (Rimu)	cmawmB564
Cla004272	Cucurbita moschata (Rifu)	cmowmB260
Cla004272	Cucurbita moschata (Rifu)	cmowmB366
Cla004272	Cucurbita moschata (Rifu)	cmowmB558
Cla004272	Melon (DHL92) v3.5.1	mewmB018
Cla004272	Melon (DHL92) v3.5.1	mewmB466
Cla004272	Watermelon (Charleston Gray)	wcgwmB136
Cla004272	Watermelon (Charleston Gray)	wcgwmB286
Cla004272	Cucumber (Chinese Long) v2	cuwmB252
Cla004272	Cucumber (Chinese Long) v2	cuwmB402