Lsi04G013820 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi04G013820
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	MTD1 family protein
Location	chr04 : 21629992 .. 21631846 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAAAATCCCTCAATTCTTCCATTTATAAAAACCCGTTTCCTCTTCTTTCTTCTGCTTCTTCTTCTCGTCTGTGTTTTTACTTTCCTTCTCTCTCTCTCTCTCTCTCCTTGTTGTCACTGTTCAAATTCAAAGTCGTTATGTCGATTACTTTGGATAGGGTTCGGCAGGTTGAAGATAAACGCTCTGGATTCTCGCCGGAGGATTTGGGTTATGGATCGGTGTTTCAGAGGTTGGTCACTCACGATGTGGATCGCGCTGTTGAAGGGTTTGAAAAGGAGGAGGCTGACGAATCTAATACTTGCAGCTCCGCTTCTACTTCTTCGTCTTCTTCGATCGGGAGGAATAGTGATCAGTCCGCTAGATCGTCGGACGGTGAGGATAGCGGCGAGAATGATGAGGTTCAGAGCTCCTATAAAGGGCCGCTGGATATGATGGACTCCTTGGAGGAGGTTTTGCCTGTCAGGTTGGTGTTCTTTCTATTTGTTTTGTGGATGCTTTGAACTCGTATTTTCTTGCGCGATCTTAGTTTGGTAATTTCGAATTGCAAATCGAAATCATTCCTTGGTTCTAGTTCTTAAAATTCATGGATGATCTGAAACGAGTTTAGGGAAGGCTTGATTAAGCTGGAAAATTTAACACTCTTGTAGTACATTTGATCTAGGGATTGAGGATCGTTAATCTGTCCTGTAGAATGGTGGAGTCATTTGATCTGTGCTTGATTATTGATCAATTACTTTTGCCTCATTTTGGATTTATTACTGGGGGGATTACGTTTACATCCTGGCGGTGACTAGTATTTATTGCTGACAAACAGAGAAAATATTTAGATTCGAGTCTTGGAAGAGTCATTAGTCTGGGCATGAACAAGTCCTGGCCTGTGGAAACATGTTTGCTGATTTCTTGTGGATAAATGCAATGATAAACTCGAGATAACTATATGATTTCGGTGGGTTAATTATGAGAAAGAGAGCATTCCGAAGCTGAAGATTAGTAAATTACATCATTTCTTTAGTGAACTTTAATCGTGAGTTTACCATCGATTTCTATTGTCATCTTTCTTGCCAATCTGTGTAGTGAAGATTGTGTTTCTGAGATCTTTCTAAGCTCAGTCAGAAAGAAATCATTGCTTTGTAGTGCACTAACATTATAAAAATTGTTCTGCAACCACTGCAAGACAATGACTACTTTTGATTTTAGCTTTATGGTTTCAGTAACACTATCTCTACTTTTGAGATTGGAATAAGGGAGAGTACCCATTAAGAGTACCCATTAATACAGTGGAGTTTTTATGCAATTTTACAGCAGAACACACACAAACATACATGATACACGTATTCTATTTGTTTCTTTATCTAATAAATAATTATTACAACATGCAGAAAAGGTATCTCAAAGTTCTATAGTGGAAAATCAAAGTCTTTCACGAGTCTGGCCGATGCTTCCTCTGTTAACTCCATGAAGGAGATTGCAAAGCCAGAGAATGCTTATTCCAAGAAACGTAGGAATCTTATGGCGTACAATCTTGTGTGGGAGAAGAACCGCAGTTTTCCTCTCAAGAATAATGGTGGTGGGATATCAAAGAGACCCATCAGCTCAAGCAGAAGCTCCTTAGCTTTGGCTGTCGCTATGAGCAGCTCCGAAAGTAACAGCAGTGAGGATTCAAATTCTAGCTCATATTCAAGCTCTCCACCGCCTCGCCCACCTCTACACCCACAATCCAGACCATGTAACAGCAATTTCACTTCCATGGTGCCACCTCAAAGAACTTTCTCCACTTGGCGTTCATATTCCTTGGCCGATTTACAAGAATGCGCCACCTTTACTAATAAGGCCAACCTAACCAATCTAAACTAA

mRNA sequence

CCAAAATCCCTCAATTCTTCCATTTATAAAAACCCGTTTCCTCTTCTTTCTTCTGCTTCTTCTTCTCGTCTGTGTTTTTACTTTCCTTCTCTCTCTCTCTCTCTCTCCTTGTTGTCACTGTTCAAATTCAAAGTCGTTATGTCGATTACTTTGGATAGGGTTCGGCAGGTTGAAGATAAACGCTCTGGATTCTCGCCGGAGGATTTGGGTTATGGATCGGTGTTTCAGAGGTTGGTCACTCACGATGTGGATCGCGCTGTTGAAGGGTTTGAAAAGGAGGAGGCTGACGAATCTAATACTTGCAGCTCCGCTTCTACTTCTTCGTCTTCTTCGATCGGGAGGAATAGTGATCAGTCCGCTAGATCGTCGGACGGTGAGGATAGCGGCGAGAATGATGAGGTTCAGAGCTCCTATAAAGGGCCGCTGGATATGATGGACTCCTTGGAGGAGGTTTTGCCTGTCAGAAAAGGTATCTCAAAGTTCTATAGTGGAAAATCAAAGTCTTTCACGAGTCTGGCCGATGCTTCCTCTGTTAACTCCATGAAGGAGATTGCAAAGCCAGAGAATGCTTATTCCAAGAAACGTAGGAATCTTATGGCGTACAATCTTGTGTGGGAGAAGAACCGCAGTTTTCCTCTCAAGAATAATGGTGGTGGGATATCAAAGAGACCCATCAGCTCAAGCAGAAGCTCCTTAGCTTTGGCTGTCGCTATGAGCAGCTCCGAAAGTAACAGCAGTGAGGATTCAAATTCTAGCTCATATTCAAGCTCTCCACCGCCTCGCCCACCTCTACACCCACAATCCAGACCATGTAACAGCAATTTCACTTCCATGGTGCCACCTCAAAGAACTTTCTCCACTTGGCGTTCATATTCCTTGGCCGATTTACAAGAATGCGCCACCTTTACTAATAAGGCCAACCTAACCAATCTAAACTAA

Coding sequence (CDS)

ATGTCGATTACTTTGGATAGGGTTCGGCAGGTTGAAGATAAACGCTCTGGATTCTCGCCGGAGGATTTGGGTTATGGATCGGTGTTTCAGAGGTTGGTCACTCACGATGTGGATCGCGCTGTTGAAGGGTTTGAAAAGGAGGAGGCTGACGAATCTAATACTTGCAGCTCCGCTTCTACTTCTTCGTCTTCTTCGATCGGGAGGAATAGTGATCAGTCCGCTAGATCGTCGGACGGTGAGGATAGCGGCGAGAATGATGAGGTTCAGAGCTCCTATAAAGGGCCGCTGGATATGATGGACTCCTTGGAGGAGGTTTTGCCTGTCAGAAAAGGTATCTCAAAGTTCTATAGTGGAAAATCAAAGTCTTTCACGAGTCTGGCCGATGCTTCCTCTGTTAACTCCATGAAGGAGATTGCAAAGCCAGAGAATGCTTATTCCAAGAAACGTAGGAATCTTATGGCGTACAATCTTGTGTGGGAGAAGAACCGCAGTTTTCCTCTCAAGAATAATGGTGGTGGGATATCAAAGAGACCCATCAGCTCAAGCAGAAGCTCCTTAGCTTTGGCTGTCGCTATGAGCAGCTCCGAAAGTAACAGCAGTGAGGATTCAAATTCTAGCTCATATTCAAGCTCTCCACCGCCTCGCCCACCTCTACACCCACAATCCAGACCATGTAACAGCAATTTCACTTCCATGGTGCCACCTCAAAGAACTTTCTCCACTTGGCGTTCATATTCCTTGGCCGATTTACAAGAATGCGCCACCTTTACTAATAAGGCCAACCTAACCAATCTAAACTAA

Protein sequence

MSITLDRVRQVEDKRSGFSPEDLGYGSVFQRLVTHDVDRAVEGFEKEEADESNTCSSASTSSSSSIGRNSDQSARSSDGEDSGENDEVQSSYKGPLDMMDSLEEVLPVRKGISKFYSGKSKSFTSLADASSVNSMKEIAKPENAYSKKRRNLMAYNLVWEKNRSFPLKNNGGGISKRPISSSRSSLALAVAMSSSESNSSEDSNSSSYSSSPPPRPPLHPQSRPCNSNFTSMVPPQRTFSTWRSYSLADLQECATFTNKANLTNLN

Homology

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BLAST of Lsi04G013820 vs. TrEMBL
Match: A0A0A0L451_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G648530 PE=4 SV=1)

HSP 1 Score: 461.8 bits (1187), Expect = 5.5e-127
Identity = 250/266 (93.98%), Postives = 256/266 (96.24%), Query Frame = 1


Query: 1   MSITLDRVRQVEDKRSGFSPEDLGYGSVFQRLVTHDVDRAVEGFEKEEADESNTCSSAST 60
           MSITLDRVRQV+DKRSGFSPEDLGYGSVFQRLVTHDVDR VEGF+KEEADESNTCSSAST
Sbjct: 1   MSITLDRVRQVDDKRSGFSPEDLGYGSVFQRLVTHDVDRVVEGFQKEEADESNTCSSAST 60

Query: 61  SSSSSIGRNSDQSARSSDGEDSGENDEVQSSYKGPLDMMDSLEEVLPVRKGISKFYSGKS 120
           SSSSSIGRNSDQ    SD ED+GENDEVQSSYKGPLDMMDSLEEVLPVRKGISKFYSGKS
Sbjct: 61  SSSSSIGRNSDQ----SDDEDNGENDEVQSSYKGPLDMMDSLEEVLPVRKGISKFYSGKS 120

Query: 121 KSFTSLADASSVNSMKEIAKPENAYSKKRRNLMAYNLVWEKNRSFPLKNNGGGISKRPIS 180
           KSFTSLADASSVNSMKEIAKPENAYSKKRRNLMAYNLVWEKNRSFPLKNNGGGISKRPIS
Sbjct: 121 KSFTSLADASSVNSMKEIAKPENAYSKKRRNLMAYNLVWEKNRSFPLKNNGGGISKRPIS 180

Query: 181 SSRSSLALAVAMSSSESNSSEDSNSSSYSSSPPPRPPLHPQSRPCNSNFTSMVPPQRTFS 240
           SS+SSLALAVAMSSSESNSSEDSN SSYSSSPPPRPPLHPQSRP N+NF SMVPPQ+TFS
Sbjct: 181 SSKSSLALAVAMSSSESNSSEDSNCSSYSSSPPPRPPLHPQSRPSNNNFPSMVPPQKTFS 240

Query: 241 TWRSYSLADLQECATFTNKANLTNLN 267
           TWRSYSLADLQECATF NKANLTNLN
Sbjct: 241 TWRSYSLADLQECATFANKANLTNLN 262

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BLAST of Lsi04G013820 vs. TrEMBL
Match: A0A067KCS0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07592 PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 4.0e-61
Identity = 142/216 (65.74%), Postives = 179/216 (82.87%), Query Frame = 1


Query: 45  EKEEADESNTCSSASTSSSSSIGRNSDQSAR-SSDGEDSGENDEVQSSYKGPLDMMDSLE 104
           E+E A+ +   SSA++S++SSIG++SD S R SSDGE+  E +EVQS+YKG LD MD+LE
Sbjct: 45  EEERAEVNECSSSAASSTTSSIGKDSDLSGRESSDGENCEEENEVQSAYKGTLDAMDALE 104

Query: 105 EVLPVRKGISKFYSGKSKSFTSLADASSVNSMKEIAKPENAYSKKRRNLMAYNLVWEKNR 164
           E LP+R+GISKFY GKSKSFTSLA+ASS  S+K+I KPENAY+++RRNL+A++ VWEKNR
Sbjct: 105 EALPMRRGISKFYDGKSKSFTSLAEASSSCSIKDITKPENAYTRRRRNLLAFSHVWEKNR 164

Query: 165 SFPLKNNGGGISKRPISSSRSSLALAVAMSSSE--SNSSEDSNSSSYSSSPPPRPPLHPQ 224
           SFP +NNGGGISKRPISSS+S+LALAVAMSSSE  S++SEDS SSS S SPP  PPLHPQ
Sbjct: 165 SFPYRNNGGGISKRPISSSKSTLALAVAMSSSESISSTSEDSTSSSNSKSPPHLPPLHPQ 224

Query: 225 SRPCNSNFTSMVPPQRTFSTWRSYSLADLQECATFT 258
           SR  ++N  S+  P++ FS WRS+S+ADLQ C+T T
Sbjct: 225 SRTSHNNLASLPSPKQNFSPWRSFSVADLQYCSTTT 260

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BLAST of Lsi04G013820 vs. TrEMBL
Match: B9RQX8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0707610 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 2.1e-57
Identity = 133/219 (60.73%), Postives = 181/219 (82.65%), Query Frame = 1


Query: 45  EKEEADESNTCSSASTSSSSSIGRNSDQSARSSDGEDSGENDEVQSSYKGPLDMMDSLEE 104
           E+ E +E ++ S A++S++SSIG+NSD S   S+GE+  + +EVQS++KG LD MD+LEE
Sbjct: 37  ERAEVNECSSSSEAASSTTSSIGKNSDLS---SNGENCEDENEVQSAFKGTLDAMDALEE 96

Query: 105 VLPVRKGISKFYSGKSKSFTSLADASSVNSMKEIAKPENAYSKKRRNLMAYNLVWEKNRS 164
            L +R+GISKFY+GKSKSFTSLA+ASS + +KEI KPENAY+++RRNL+A+N VW+KNRS
Sbjct: 97  ALSMRRGISKFYNGKSKSFTSLAEASSSSCIKEITKPENAYTRRRRNLLAFNHVWDKNRS 156

Query: 165 FPLKNNGGGISKRPISSSRSSLALAVAMSSSE--SNSSEDSNSSSYSSSPPPRPPLHPQS 224
           FP ++NGGGISKRPISSS+S+LALAVAMSSSE  S++SEDS SSS S++P   PPLHP+S
Sbjct: 157 FPHRSNGGGISKRPISSSKSTLALAVAMSSSESISSASEDSTSSSMSNTPTHLPPLHPRS 216

Query: 225 RPCNSNFTSMVPPQRTFSTWRSYSLADLQECATFTNKAN 262
           R  ++N  S+  P++ FS WRS+S+ADLQ+CAT ++K +
Sbjct: 217 RTYHNNLASLPSPRQNFSPWRSFSVADLQQCATTSDKTD 252

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BLAST of Lsi04G013820 vs. TrEMBL
Match: B9IKE9_POPTR (MTD1 family protein OS=Populus trichocarpa GN=POPTR_0018s08410g PE=4 SV=2)

HSP 1 Score: 230.7 bits (587), Expect = 2.1e-57
Identity = 147/266 (55.26%), Postives = 191/266 (71.80%), Query Frame = 1


Query: 1   MSITLDRVRQVEDKRSGFSPEDLGYGSVFQRLVTHDVDRAVEGFEKEEADESNTCSSAST 60
           MSI +D    ++   +GF    LG+      +VT  V  +  G  +E A+E +  SS +T
Sbjct: 1   MSIAVDSTCNIDMDSTGFPRGRLGF------VVTSSVFDSPVGRREEMAEECSP-SSLTT 60

Query: 61  SSSSSIGRNSDQSARSSDGEDSGENDEVQSSYKGPLDMMDSLEEVLPVRKGISKFYSGKS 120
           SS SSIG++SD S     GED  + +EVQS+YKG LD M+ LEEVLP+R+GISKFY GKS
Sbjct: 61  SSKSSIGKDSDLSG---GGEDGLDENEVQSAYKGALDSMEGLEEVLPIRRGISKFYDGKS 120

Query: 121 KSFTSLADASSVNSMKEIAKPENAYSKKRRNLMAYNLVWEKNRSFPLKNNGGGISKRPIS 180
           KSFT L+DASS  S+K+IAKPENA+++KRRNL+A+N  WEKNR FP +N   GISKRPIS
Sbjct: 121 KSFTILSDASSSPSIKDIAKPENAFTRKRRNLLAFNHFWEKNRGFPHRN---GISKRPIS 180

Query: 181 SSRSSLALAVAMSSSE--SNSSEDSNSSSYSSSPPPRPPLHPQSRPCNSNFTSMVPPQRT 240
           SS+S+LALAVAMSSSE  S++SEDSNS+S S SPP  PPLHP+SR  ++N  S+  P+++
Sbjct: 181 SSKSTLALAVAMSSSESISSASEDSNSTSTSKSPPHLPPLHPRSRASHNNLASLPSPRQS 240

Query: 241 FSTWRSYSLADLQECATFTNKANLTN 265
           FS WRS+SLADLQ+C T  +    T+
Sbjct: 241 FSPWRSFSLADLQQCGTVNSYCEKTD 253

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BLAST of Lsi04G013820 vs. TrEMBL
Match: W9RF79_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_018609 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 2.1e-57
Identity = 155/262 (59.16%), Postives = 185/262 (70.61%), Query Frame = 1


Query: 1   MSITLDRVRQVEDKRSGFSPEDLGYGSVFQRLVTHDVDRAVEGFEKEEADESNTC----S 60
           MSI LD  R+++ K SG        G VF   V     R     + +   ESN C    S
Sbjct: 1   MSIALDNNRRMDMKSSGIMR-----GLVFDSPVE---GRIAGAGDSDTVKESNACNNETS 60

Query: 61  SASTS-----SSSSIGRNSDQSARSSDGEDSGENDEVQSSYKGPLDMMDSLEEVLPVRKG 120
           SAS S     SSSSIG+NSD S RSS   D  E +E QSSYKGPL+MM++LEEVLP+R+G
Sbjct: 61  SASASASASASSSSIGKNSDLSVRSSSDGDDCEENEAQSSYKGPLEMMEALEEVLPIRRG 120

Query: 121 ISKFYSGKSKSFTSLADASSVNSMKEIAKPENAYSKKRRNLMAYNLVWE-KNRSFPLKNN 180
           ISKFY+GKSKSFTSL DA+S +S+K+I KPENAY++KRRNLMA+N VW+ KNRSFPL++N
Sbjct: 121 ISKFYNGKSKSFTSLGDAASTSSIKDITKPENAYTRKRRNLMAFNHVWDNKNRSFPLRSN 180

Query: 181 GGGISKRPISSSRSSLALAVAMSSSESNSSEDSNSSSYSSSPPPRPPLHPQSRPCNSNFT 240
           GGGISKRPISSSRSSLALA+AMSSSES+SS   +SS  S SPPP PPLHPQ+R  + +  
Sbjct: 181 GGGISKRPISSSRSSLALAMAMSSSESSSSTSDDSS--SRSPPPLPPLHPQAR-ASFHVK 240

Query: 241 SMVPPQRTFSTWRSYSLADLQE 253
           S   P R F   RS SLADLQ+
Sbjct: 241 SSTSPPRHFCASRSLSLADLQQ 251

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BLAST of Lsi04G013820 vs. TAIR10
Match: AT5G21940.1 (AT5G21940.1 unknown protein)

HSP 1 Score: 151.4 bits (381), Expect = 8.0e-37
Identity = 116/229 (50.66%), Postives = 155/229 (67.69%), Query Frame = 1


Query: 52  SNTCSSASTSSSSSIGRNSDQSARSSD--GEDSGENDEVQSSYKGPLDMMDSLEEVLPVR 111
           S++ SS S+S+SSSIGRNSD   +SS+  G+D+GEN EV+S YKGPL+MM+SLE+VLPVR
Sbjct: 30  SDSSSSPSSSASSSIGRNSDDGEKSSEDGGDDAGEN-EVESPYKGPLEMMESLEQVLPVR 89

Query: 112 KGISKFYSGKSKSFTSL-ADASSV----NSMKEIAKPENAYSKKRRNLMAYNLVWEKNRS 171
           KGISK+YSGKSKSFT+L A+A+S     +SMK++AKPEN YS++RRNL+ +  +WE N++
Sbjct: 90  KGISKYYSGKSKSFTNLTAEAASALTSSSSMKDLAKPENPYSRRRRNLLCHQ-IWENNKT 149

Query: 172 FPLKNNGGGISKRPI-SSSRSSLALAVA-----MSSSESNSSEDSN--SSSYSSSPPPR- 231
            P     GGISK+ + SSSRS+L LA+A     M+   S+S  DS+  SS  +S  PPR 
Sbjct: 150 TPR----GGISKKHVMSSSRSALTLAMAVAAGVMTGEGSSSGGDSSPGSSPTTSGSPPRQ 209

Query: 232 -----------PPLHPQSRPCNSNFTSMVPPQRTFSTWRSYSLADLQEC 254
                      PPL+P+S+    N TS       F  WRS+S+AD   C
Sbjct: 210 LHHHQHQMKKLPPLYPRSQGSFGNLTSS-QSSLGFCAWRSFSVADFPRC 251

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BLAST of Lsi04G013820 vs. TAIR10
Match: AT3G43850.1 (AT3G43850.1 unknown protein)

HSP 1 Score: 102.4 bits (254), Expect = 4.3e-22
Identity = 71/157 (45.22%), Postives = 98/157 (62.42%), Query Frame = 1


Query: 50  DESNTCSSASTSSSSSIGRNSDQSARSSDGEDSGENDEVQSSYKGPLDMMDSLEEVLPVR 109
           D+   C S+STSS S IG NSD        +D G  +E++SSY GPLDMM+SLEE LP++
Sbjct: 15  DQEFACLSSSTSSDS-IGENSD--------DDEGGENEIESSYNGPLDMMESLEEALPIK 74

Query: 110 KGISKFYSGKSKSFTSLADASSVNSMKEIAKPENAYSKKRRNLMAYNLVWEKNRSFPLKN 169
           + ISKFY GKSKSF SL++ SS+  +K++ KPEN YS++RRNL+++ +            
Sbjct: 75  RAISKFYKGKSKSFMSLSETSSL-PVKDLTKPENLYSRRRRNLLSHRIC----------- 134

Query: 170 NGGGISKRPISSSRSSLALAVAMSSSESNSSEDSNSS 207
           + GGISK+P  S        +AMS  E +SS   + S
Sbjct: 135 SRGGISKKPFKS-------VLAMSQREGDSSSSGDDS 143

[Close]

BLAST of Lsi04G013820 vs. TAIR10
Match: AT5G24890.1 (AT5G24890.1 unknown protein)

HSP 1 Score: 59.3 bits (142), Expect = 4.1e-09
Identity = 46/116 (39.66%), Postives = 64/116 (55.17%), Query Frame = 1


Query: 60  TSSSSSIGRNSDQSARSSDGEDSGENDEVQSSYKG--PLDMMDSLEEVLPVRKGISKFYS 119
           +S SSSIG   D  +   + E   END+V S   G   L  M SLE+ LP ++G+S  Y 
Sbjct: 59  SSDSSSIGTPGD--SEEDEEESENENDDVSSKELGLRGLASMSSLEDSLPSKRGLSNHYK 118

Query: 120 GKSKSFTSLADASSVNSMKEIAKPENAYSKKRRNLMAYNLV------WEKNRSFPL 168
           GKSKSF +L +   + S+KE+AK EN  +K+RR  +   L       W+  +S PL
Sbjct: 119 GKSKSFGNLGE---IGSVKEVAKQENPLNKRRRLQICNKLARKSFYSWQNPKSMPL 169

[Close]

BLAST of Lsi04G013820 vs. TAIR10
Match: AT2G24550.1 (AT2G24550.1 unknown protein)

HSP 1 Score: 57.8 bits (138), Expect = 1.2e-08
Identity = 46/122 (37.70%), Postives = 71/122 (58.20%), Query Frame = 1


Query: 49  ADESNTCSSASTSSSSSIGRNSDQSARSSDGEDSGENDEVQSSYKGPLDMMD-SLEEVLP 108
           ++ +N     S+ SSSSIG        SS+ E+  E D+  S  +G LD    SLE+ LP
Sbjct: 54  SNNNNKSPEESSDSSSSIGE-------SSENEEEEEEDDAVSCQRGTLDSFSSSLEDSLP 113

Query: 109 VRKGISKFYSGKSKSFTSLADASSVNSMKEIAKPENAYSKKRRNLMAYNLVWEKNRSFPL 168
           +++G+S  Y GKSKSF +L +A+S    K++ K EN ++K+RR ++A N +  + RS   
Sbjct: 114 IKRGLSNHYVGKSKSFGNLMEAAS--KAKDLEKVENPFNKRRRLVIA-NKLRRRGRSMSA 165

Query: 169 KN 170
            N
Sbjct: 174 SN 165

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BLAST of Lsi04G013820 vs. TAIR10
Match: AT5G56550.1 (AT5G56550.1 oxidative stress 3)

HSP 1 Score: 50.1 bits (118), Expect = 2.5e-06
Identity = 46/154 (29.87%), Postives = 76/154 (49.35%), Query Frame = 1


Query: 36  DVDRAVEGFEKEEADESNTCSSASTSSSSSIGRNSDQSARSSDGEDSGENDEVQSSYKGP 95
           D+ + V     +E D S++CS +S+  S                ED  ++D   SS  GP
Sbjct: 28  DIVQEVSTTFSDEEDNSSSCSLSSSMCSDFT-------------EDDDDDDVSSSSSNGP 87

Query: 96  LDMMDSLEEVLPVRKGISKFYSGKSKSFTSLADASSVNSMKEIAKPENAYSKKRRNLMAY 155
           L+ +  L   LP+++G+SKFY GKS+SFTSL +  S+  + +       Y  KR++  + 
Sbjct: 88  LEDLSDLMSHLPIKRGLSKFYEGKSQSFTSLGNVKSLEDLMKRGFKSRNYGAKRKSSRST 147

Query: 156 NLVWEKN--RSFPLKNNGGGISKRPISSSRSSLA 188
             + +++  R F  K     ISK+P  +  S L+
Sbjct: 148 GGILDQSYKRVFSPK---ATISKKPNRTPSSVLS 165

[Close]

BLAST of Lsi04G013820 vs. NCBI nr
Match: gi|449447177|ref|XP_004141345.1| (PREDICTED: vitellogenin-2-like [Cucumis sativus])

HSP 1 Score: 461.8 bits (1187), Expect = 7.9e-127
Identity = 250/266 (93.98%), Postives = 256/266 (96.24%), Query Frame = 1


Query: 1   MSITLDRVRQVEDKRSGFSPEDLGYGSVFQRLVTHDVDRAVEGFEKEEADESNTCSSAST 60
           MSITLDRVRQV+DKRSGFSPEDLGYGSVFQRLVTHDVDR VEGF+KEEADESNTCSSAST
Sbjct: 1   MSITLDRVRQVDDKRSGFSPEDLGYGSVFQRLVTHDVDRVVEGFQKEEADESNTCSSAST 60

Query: 61  SSSSSIGRNSDQSARSSDGEDSGENDEVQSSYKGPLDMMDSLEEVLPVRKGISKFYSGKS 120
           SSSSSIGRNSDQ    SD ED+GENDEVQSSYKGPLDMMDSLEEVLPVRKGISKFYSGKS
Sbjct: 61  SSSSSIGRNSDQ----SDDEDNGENDEVQSSYKGPLDMMDSLEEVLPVRKGISKFYSGKS 120

Query: 121 KSFTSLADASSVNSMKEIAKPENAYSKKRRNLMAYNLVWEKNRSFPLKNNGGGISKRPIS 180
           KSFTSLADASSVNSMKEIAKPENAYSKKRRNLMAYNLVWEKNRSFPLKNNGGGISKRPIS
Sbjct: 121 KSFTSLADASSVNSMKEIAKPENAYSKKRRNLMAYNLVWEKNRSFPLKNNGGGISKRPIS 180

Query: 181 SSRSSLALAVAMSSSESNSSEDSNSSSYSSSPPPRPPLHPQSRPCNSNFTSMVPPQRTFS 240
           SS+SSLALAVAMSSSESNSSEDSN SSYSSSPPPRPPLHPQSRP N+NF SMVPPQ+TFS
Sbjct: 181 SSKSSLALAVAMSSSESNSSEDSNCSSYSSSPPPRPPLHPQSRPSNNNFPSMVPPQKTFS 240

Query: 241 TWRSYSLADLQECATFTNKANLTNLN 267
           TWRSYSLADLQECATF NKANLTNLN
Sbjct: 241 TWRSYSLADLQECATFANKANLTNLN 262

[Close]

BLAST of Lsi04G013820 vs. NCBI nr
Match: gi|659104048|ref|XP_008452790.1| (PREDICTED: uncharacterized protein DDB_G0271670 [Cucumis melo])

HSP 1 Score: 454.9 bits (1169), Expect = 9.6e-125
Identity = 250/267 (93.63%), Postives = 256/267 (95.88%), Query Frame = 1


Query: 1   MSITLDRVRQVEDKRSGFSPEDLGYGSVFQRLVTHDVDRAVEGFEKEE-ADESNTCSSAS 60
           MSITLDRVRQV+ KRSGFSPEDLGYGSVFQRLVT DVDRAVEGF+KEE ADESNTCSSAS
Sbjct: 1   MSITLDRVRQVDGKRSGFSPEDLGYGSVFQRLVTQDVDRAVEGFQKEEDADESNTCSSAS 60

Query: 61  TSSSSSIGRNSDQSARSSDGEDSGENDEVQSSYKGPLDMMDSLEEVLPVRKGISKFYSGK 120
           TSSSSSIGRNSDQ    SD ED+GENDEVQSSYKGPLDMMDSLEEVLPVRKGISKFYSGK
Sbjct: 61  TSSSSSIGRNSDQ----SDDEDNGENDEVQSSYKGPLDMMDSLEEVLPVRKGISKFYSGK 120

Query: 121 SKSFTSLADASSVNSMKEIAKPENAYSKKRRNLMAYNLVWEKNRSFPLKNNGGGISKRPI 180
           SKSFTSLADASSVNSMKEIAKPENAYSKKRRNLMAYNLVWEKNRSFPLKNNGGGISKRPI
Sbjct: 121 SKSFTSLADASSVNSMKEIAKPENAYSKKRRNLMAYNLVWEKNRSFPLKNNGGGISKRPI 180

Query: 181 SSSRSSLALAVAMSSSESNSSEDSNSSSYSSSPPPRPPLHPQSRPCNSNFTSMVPPQRTF 240
           SSS+SSLALAVAMSSSESNSSEDSNSSSYSSSPPPRPPLHPQSRP N+NF SMVPPQ+TF
Sbjct: 181 SSSKSSLALAVAMSSSESNSSEDSNSSSYSSSPPPRPPLHPQSRPSNNNFPSMVPPQKTF 240

Query: 241 STWRSYSLADLQECATFTNKANLTNLN 267
           STWRSYSLADLQECATF NKANLTNLN
Sbjct: 241 STWRSYSLADLQECATFANKANLTNLN 263

[Close]

BLAST of Lsi04G013820 vs. NCBI nr
Match: gi|802629437|ref|XP_012077185.1| (PREDICTED: serine/arginine repetitive matrix protein 2-like [Jatropha curcas])

HSP 1 Score: 243.0 bits (619), Expect = 5.7e-61
Identity = 142/216 (65.74%), Postives = 179/216 (82.87%), Query Frame = 1


Query: 45  EKEEADESNTCSSASTSSSSSIGRNSDQSAR-SSDGEDSGENDEVQSSYKGPLDMMDSLE 104
           E+E A+ +   SSA++S++SSIG++SD S R SSDGE+  E +EVQS+YKG LD MD+LE
Sbjct: 45  EEERAEVNECSSSAASSTTSSIGKDSDLSGRESSDGENCEEENEVQSAYKGTLDAMDALE 104

Query: 105 EVLPVRKGISKFYSGKSKSFTSLADASSVNSMKEIAKPENAYSKKRRNLMAYNLVWEKNR 164
           E LP+R+GISKFY GKSKSFTSLA+ASS  S+K+I KPENAY+++RRNL+A++ VWEKNR
Sbjct: 105 EALPMRRGISKFYDGKSKSFTSLAEASSSCSIKDITKPENAYTRRRRNLLAFSHVWEKNR 164

Query: 165 SFPLKNNGGGISKRPISSSRSSLALAVAMSSSE--SNSSEDSNSSSYSSSPPPRPPLHPQ 224
           SFP +NNGGGISKRPISSS+S+LALAVAMSSSE  S++SEDS SSS S SPP  PPLHPQ
Sbjct: 165 SFPYRNNGGGISKRPISSSKSTLALAVAMSSSESISSTSEDSTSSSNSKSPPHLPPLHPQ 224

Query: 225 SRPCNSNFTSMVPPQRTFSTWRSYSLADLQECATFT 258
           SR  ++N  S+  P++ FS WRS+S+ADLQ C+T T
Sbjct: 225 SRTSHNNLASLPSPKQNFSPWRSFSVADLQYCSTTT 260

[Close]

BLAST of Lsi04G013820 vs. NCBI nr
Match: gi|703105965|ref|XP_010098377.1| (hypothetical protein L484_018609 [Morus notabilis])

HSP 1 Score: 230.7 bits (587), Expect = 2.9e-57
Identity = 155/262 (59.16%), Postives = 185/262 (70.61%), Query Frame = 1


Query: 1   MSITLDRVRQVEDKRSGFSPEDLGYGSVFQRLVTHDVDRAVEGFEKEEADESNTC----S 60
           MSI LD  R+++ K SG        G VF   V     R     + +   ESN C    S
Sbjct: 1   MSIALDNNRRMDMKSSGIMR-----GLVFDSPVE---GRIAGAGDSDTVKESNACNNETS 60

Query: 61  SASTS-----SSSSIGRNSDQSARSSDGEDSGENDEVQSSYKGPLDMMDSLEEVLPVRKG 120
           SAS S     SSSSIG+NSD S RSS   D  E +E QSSYKGPL+MM++LEEVLP+R+G
Sbjct: 61  SASASASASASSSSIGKNSDLSVRSSSDGDDCEENEAQSSYKGPLEMMEALEEVLPIRRG 120

Query: 121 ISKFYSGKSKSFTSLADASSVNSMKEIAKPENAYSKKRRNLMAYNLVWE-KNRSFPLKNN 180
           ISKFY+GKSKSFTSL DA+S +S+K+I KPENAY++KRRNLMA+N VW+ KNRSFPL++N
Sbjct: 121 ISKFYNGKSKSFTSLGDAASTSSIKDITKPENAYTRKRRNLMAFNHVWDNKNRSFPLRSN 180

Query: 181 GGGISKRPISSSRSSLALAVAMSSSESNSSEDSNSSSYSSSPPPRPPLHPQSRPCNSNFT 240
           GGGISKRPISSSRSSLALA+AMSSSES+SS   +SS  S SPPP PPLHPQ+R  + +  
Sbjct: 181 GGGISKRPISSSRSSLALAMAMSSSESSSSTSDDSS--SRSPPPLPPLHPQAR-ASFHVK 240

Query: 241 SMVPPQRTFSTWRSYSLADLQE 253
           S   P R F   RS SLADLQ+
Sbjct: 241 SSTSPPRHFCASRSLSLADLQQ 251

[Close]

BLAST of Lsi04G013820 vs. NCBI nr
Match: gi|255550193|ref|XP_002516147.1| (PREDICTED: uncharacterized protein LOC8258594 [Ricinus communis])

HSP 1 Score: 230.7 bits (587), Expect = 2.9e-57
Identity = 133/219 (60.73%), Postives = 181/219 (82.65%), Query Frame = 1


Query: 45  EKEEADESNTCSSASTSSSSSIGRNSDQSARSSDGEDSGENDEVQSSYKGPLDMMDSLEE 104
           E+ E +E ++ S A++S++SSIG+NSD S   S+GE+  + +EVQS++KG LD MD+LEE
Sbjct: 37  ERAEVNECSSSSEAASSTTSSIGKNSDLS---SNGENCEDENEVQSAFKGTLDAMDALEE 96

Query: 105 VLPVRKGISKFYSGKSKSFTSLADASSVNSMKEIAKPENAYSKKRRNLMAYNLVWEKNRS 164
            L +R+GISKFY+GKSKSFTSLA+ASS + +KEI KPENAY+++RRNL+A+N VW+KNRS
Sbjct: 97  ALSMRRGISKFYNGKSKSFTSLAEASSSSCIKEITKPENAYTRRRRNLLAFNHVWDKNRS 156

Query: 165 FPLKNNGGGISKRPISSSRSSLALAVAMSSSE--SNSSEDSNSSSYSSSPPPRPPLHPQS 224
           FP ++NGGGISKRPISSS+S+LALAVAMSSSE  S++SEDS SSS S++P   PPLHP+S
Sbjct: 157 FPHRSNGGGISKRPISSSKSTLALAVAMSSSESISSASEDSTSSSMSNTPTHLPPLHPRS 216

Query: 225 RPCNSNFTSMVPPQRTFSTWRSYSLADLQECATFTNKAN 262
           R  ++N  S+  P++ FS WRS+S+ADLQ+CAT ++K +
Sbjct: 217 RTYHNNLASLPSPRQNFSPWRSFSVADLQQCATTSDKTD 252

The following BLAST results are available for this feature:

BLAST of Lsi04G013820 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi04G013820 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L451_CUCSA	5.5e-127	93.98	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G648530 PE=4 SV=1	[more]
A0A067KCS0_JATCU	4.0e-61	65.74	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07592 PE=4 SV=1	[more]
B9RQX8_RICCO	2.1e-57	60.73	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0707610 PE=4 SV=1	[more]
B9IKE9_POPTR	2.1e-57	55.26	MTD1 family protein OS=Populus trichocarpa GN=POPTR_0018s08410g PE=4 SV=2	[more]
W9RF79_9ROSA	2.1e-57	59.16	Uncharacterized protein OS=Morus notabilis GN=L484_018609 PE=4 SV=1	[more]

BLAST of Lsi04G013820 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G21940.1	8.0e-37	50.66	unknown protein	[more]
AT3G43850.1	4.3e-22	45.22	unknown protein	[more]
AT5G24890.1	4.1e-09	39.66	unknown protein	[more]
AT2G24550.1	1.2e-08	37.70	unknown protein	[more]
AT5G56550.1	2.5e-06	29.87	oxidative stress 3	[more]

BLAST of Lsi04G013820 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449447177\|ref\|XP_004141345.1\|	7.9e-127	93.98	PREDICTED: vitellogenin-2-like [Cucumis sativus]	[more]
gi\|659104048\|ref\|XP_008452790.1\|	9.6e-125	93.63	PREDICTED: uncharacterized protein DDB_G0271670 [Cucumis melo]	[more]
gi\|802629437\|ref\|XP_012077185.1\|	5.7e-61	65.74	PREDICTED: serine/arginine repetitive matrix protein 2-like [Jatropha curcas]	[more]
gi\|703105965\|ref\|XP_010098377.1\|	2.9e-57	59.16	hypothetical protein L484_018609 [Morus notabilis]	[more]
gi\|255550193\|ref\|XP_002516147.1\|	2.9e-57	60.73	PREDICTED: uncharacterized protein LOC8258594 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G013820.1	Lsi04G013820.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33172	FAMILY NOT NAMED	coord: 45..266 score: 2.7
None	No IPR available	PANTHER	PTHR33172:SF6	SUBFAMILY NOT NAMED	coord: 45..266 score: 2.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi04G013820	Csa4G648530	Cucumber (Chinese Long) v2	culsiB291
Lsi04G013820	CSPI04G25780	Wild cucumber (PI 183967)	cpilsiB291
Lsi04G013820	Cucsa.271090	Cucumber (Gy14) v1	cgylsiB439
Lsi04G013820	CmaCh09G003690	Cucurbita maxima (Rimu)	cmalsiB024
Lsi04G013820	CmoCh09G003680	Cucurbita moschata (Rifu)	cmolsiB012
Lsi04G013820	CmoCh01G017560	Cucurbita moschata (Rifu)	cmolsiB416
Lsi04G013820	Cla007456	Watermelon (97103) v1	lsiwmB318
Lsi04G013820	MELO3C016917	Melon (DHL92) v3.5.1	lsimeB314
Lsi04G013820	ClCG05G015790	Watermelon (Charleston Gray)	lsiwcgB288
Lsi04G013820	MELO3C016917.2	Melon (DHL92) v3.6.1	lsimedB330
Lsi04G013820	Cla97C05G096760	Watermelon (97103) v2	lsiwmbB289
Lsi04G013820	Bhi09G002528	Wax gourd	lsiwgoB394
Lsi04G013820	Cp4.1LG02g05790	Cucurbita pepo (Zucchini)	cpelsiB462
Lsi04G013820	CsGy4G024080	Cucumber (Gy14) v2	cgyblsiB269
Lsi04G013820	Carg10721	Silver-seed gourd	carlsiB708
Lsi04G013820	CsaV3_4G036090	Cucumber (Chinese Long) v3	cuclsiB312

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi04G013820	Bottle gourd (USVL1VR-Ls)	lsilsiB100
Lsi04G013820	Bottle gourd (USVL1VR-Ls)	lsilsiB141
Lsi04G013820	Cucumber (Gy14) v1	cgylsiB578
Lsi04G013820	Cucurbita maxima (Rimu)	cmalsiB060
Lsi04G013820	Cucurbita maxima (Rimu)	cmalsiB124
Lsi04G013820	Cucurbita maxima (Rimu)	cmalsiB424
Lsi04G013820	Cucurbita moschata (Rifu)	cmolsiB047
Lsi04G013820	Cucurbita moschata (Rifu)	cmolsiB112
Lsi04G013820	Cucurbita pepo (Zucchini)	cpelsiB117
Lsi04G013820	Cucurbita pepo (Zucchini)	cpelsiB295
Lsi04G013820	Cucurbita pepo (Zucchini)	cpelsiB638
Lsi04G013820	Wild cucumber (PI 183967)	cpilsiB539
Lsi04G013820	Cucumber (Chinese Long) v2	culsiB525
Lsi04G013820	Melon (DHL92) v3.5.1	lsimeB291
Lsi04G013820	Melon (DHL92) v3.5.1	lsimeB296
Lsi04G013820	Watermelon (Charleston Gray)	lsiwcgB255
Lsi04G013820	Watermelon (97103) v1	lsiwmB286
Lsi04G013820	Watermelon (97103) v1	lsiwmB300
Lsi04G013820	Cucumber (Gy14) v2	cgyblsiB492
Lsi04G013820	Melon (DHL92) v3.6.1	lsimedB305
Lsi04G013820	Melon (DHL92) v3.6.1	lsimedB310
Lsi04G013820	Silver-seed gourd	carlsiB085
Lsi04G013820	Silver-seed gourd	carlsiB576
Lsi04G013820	Cucumber (Chinese Long) v3	cuclsiB557
Lsi04G013820	Watermelon (97103) v2	lsiwmbB279
Lsi04G013820	Watermelon (97103) v2	lsiwmbB312
Lsi04G013820	Wax gourd	lsiwgoB401
Lsi04G013820	Wax gourd	lsiwgoB409