Lsi04G010080 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi04G010080
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Voltage-dependent T-type calcium channel subunit alpha-1I, putative
Location	chr04 : 11340351 .. 11340782 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAATTCTCTGCATCTCTCATAATACCACCGCCACCGCCACCGCCACCGCCACCCTCCTTCCATCGCCCCTCCACCGCCGTCTTCCCCAAGTTCAGGCCAACTTCAGCCATTTCCTCACCATGGCTCCGCCGTCGAGGTGGGGCGGCAGTGCCAAGATGTGTTAGTCAGGGTGGGTGGGGAGGCTCTGTGGCGGAGCTAGACATAGAAGAGTGGCTGAAGCTAGGGAGGCTGGAGGAGAAGTGCGGCGGCGGAGGAAAGGGATTGGTGGAGTTACTTGAATGTTTGGAAAGAGAAGCCATTATGGGGGAAGACGAAGGTAGAGACCCTACAGATTACGATAGGAGAGCTAAGATTTTTAGTACCAGTTCTAAAGTGTTTCAAGCTCTCAAGCAACATTCTGATGCTGCTCCTCCTCCGCCCGTATCTTGA

mRNA sequence

ATGCAATTCTCTGCATCTCTCATAATACCACCGCCACCGCCACCGCCACCGCCACCCTCCTTCCATCGCCCCTCCACCGCCGTCTTCCCCAAGTTCAGGCCAACTTCAGCCATTTCCTCACCATGGCTCCGCCGTCGAGGTGGGGCGGCAGTGCCAAGATGTGTTAGTCAGGGTGGGTGGGGAGGCTCTGTGGCGGAGCTAGACATAGAAGAGTGGCTGAAGCTAGGGAGGCTGGAGGAGAAGTGCGGCGGCGGAGGAAAGGGATTGGTGGAGTTACTTGAATGTTTGGAAAGAGAAGCCATTATGGGGGAAGACGAAGGTAGAGACCCTACAGATTACGATAGGAGAGCTAAGATTTTTAGTACCAGTTCTAAAGTGTTTCAAGCTCTCAAGCAACATTCTGATGCTGCTCCTCCTCCGCCCGTATCTTGA

Coding sequence (CDS)

ATGCAATTCTCTGCATCTCTCATAATACCACCGCCACCGCCACCGCCACCGCCACCCTCCTTCCATCGCCCCTCCACCGCCGTCTTCCCCAAGTTCAGGCCAACTTCAGCCATTTCCTCACCATGGCTCCGCCGTCGAGGTGGGGCGGCAGTGCCAAGATGTGTTAGTCAGGGTGGGTGGGGAGGCTCTGTGGCGGAGCTAGACATAGAAGAGTGGCTGAAGCTAGGGAGGCTGGAGGAGAAGTGCGGCGGCGGAGGAAAGGGATTGGTGGAGTTACTTGAATGTTTGGAAAGAGAAGCCATTATGGGGGAAGACGAAGGTAGAGACCCTACAGATTACGATAGGAGAGCTAAGATTTTTAGTACCAGTTCTAAAGTGTTTCAAGCTCTCAAGCAACATTCTGATGCTGCTCCTCCTCCGCCCGTATCTTGA

Protein sequence

MQFSASLIIPPPPPPPPPPSFHRPSTAVFPKFRPTSAISSPWLRRRGGAAVPRCVSQGGWGGSVAELDIEEWLKLGRLEEKCGGGGKGLVELLECLEREAIMGEDEGRDPTDYDRRAKIFSTSSKVFQALKQHSDAAPPPPVS

Homology

[Close]

BLAST of Lsi04G010080 vs. TrEMBL
Match: A0A0A0KQQ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G223100 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.1e-52
Identity = 111/145 (76.55%), Postives = 118/145 (81.38%), Query Frame = 1


Query: 1   MQFSASLIIPPPPPPPPPPSFHRPSTAVFPKFRPTSAISSPWLRRRGG--AAVPRCVSQG 60
           MQ SASLI      PPPPP  HRPSTA FP  RPT ++SSPWL  R     A PRCVSQG
Sbjct: 1   MQLSASLI-----SPPPPPLLHRPSTAFFPNLRPTPSLSSPWLCHRPAEAGAEPRCVSQG 60

Query: 61  GWGGSVA--ELDIEEWLKLGRLEEKCGGGGKGLVELLECLEREAIMGEDEGRDPTDYDRR 120
           GWG SV   E+DIEEWLKLGRLEEKCGGGGKG+VELLECLE+EAIMGEDEGRDPTDY+RR
Sbjct: 61  GWGSSVGVGEVDIEEWLKLGRLEEKCGGGGKGIVELLECLEKEAIMGEDEGRDPTDYNRR 120

Query: 121 AKIFSTSSKVFQALKQHSDAAPPPP 142
           AKIFSTSS+VFQALKQHSDA  PPP
Sbjct: 121 AKIFSTSSEVFQALKQHSDAVAPPP 140

[Close]

BLAST of Lsi04G010080 vs. TrEMBL
Match: M5XRG8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012715mg PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.8e-20
Identity = 55/105 (52.38%), Postives = 73/105 (69.52%), Query Frame = 1


Query: 44  RRRGGAAVPRCVSQGGWGGSVAELD------------IEEWLKLGRLEEKCGGGGKGLVE 103
           ++   A V RCV  G   G V+E++             EEWL++GRL EKCG   +G+VE
Sbjct: 55  KKSSSAMVVRCVDTGCSSGPVSEIEGELETEIRPEDGAEEWLRVGRLREKCGD--RGMVE 114

Query: 104 LLECLEREAIMGEDEGRDPTDYDRRAKIFSTSSKVFQALKQHSDA 137
           LLECLEREAIMGEDEG++P+DY+RRA+IF  SS+VFQALK+ + +
Sbjct: 115 LLECLEREAIMGEDEGKEPSDYNRRAQIFYKSSRVFQALKERNQS 157

[Close]

BLAST of Lsi04G010080 vs. TrEMBL
Match: A5B7T3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0067g03180 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.7e-18
Identity = 54/88 (61.36%), Postives = 68/88 (77.27%), Query Frame = 1


Query: 48  GAAVPRCVSQGGWGGSVAELDIE---EWLKLGRLEEKCGGGGKGLVELLECLEREAIMGE 107
           G+A+ RC +QG    S  EL+ E   EW ++GR  +KC    KG+VELLECLEREAIMGE
Sbjct: 52  GSAI-RCANQGSVIESQKELESEMGSEWKEMGRWRDKCQE--KGMVELLECLEREAIMGE 111

Query: 108 DEGRDPTDYDRRAKIFSTSSKVFQALKQ 133
           DEGR+PTDY+RRAKIFS S++VF+ALK+
Sbjct: 112 DEGREPTDYNRRAKIFSESARVFRALKE 136

[Close]

BLAST of Lsi04G010080 vs. TrEMBL
Match: W9RTQ0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_002050 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.2e-18
Identity = 46/76 (60.53%), Postives = 63/76 (82.89%), Query Frame = 1


Query: 62  GSVAELDIEEWLKLGRLEEKCGGGGKGLVELLECLEREAIMGEDEGRDPTDYDRRAKIFS 121
           G+V+  ++ +W+K  RL EKCG G +G+VE+LECLEREAIMGED+GR+ +DY+RRA+IF 
Sbjct: 22  GAVSAEEVADWMKAARLSEKCGEG-RGMVEILECLEREAIMGEDQGREASDYNRRAQIFD 81

Query: 122 TSSKVFQALKQHSDAA 138
            SS+VFQALK+ + AA
Sbjct: 82  RSSRVFQALKESTSAA 96

[Close]

BLAST of Lsi04G010080 vs. TrEMBL
Match: A0A0D2UGV0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G219400 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.9e-17
Identity = 51/79 (64.56%), Postives = 61/79 (77.22%), Query Frame = 1


Query: 59  GW-GGSVAEL---DIEEWLKLGRLEEKCGGGGKGLVELLECLEREAIMGEDEGRDPTDYD 118
           GW  G +AE    + EEW++  R+ E+C G  KG+VELLECLE EAIMGED+GRDP DY+
Sbjct: 55  GWDSGLLAEKKQEEKEEWMRDERVSERCKGR-KGMVELLECLETEAIMGEDQGRDPMDYN 114

Query: 119 RRAKIFSTSSKVFQALKQH 134
           RRA+IF TSSKVFQALK H
Sbjct: 115 RRAQIFDTSSKVFQALKSH 132

[Close]

BLAST of Lsi04G010080 vs. TAIR10
Match: AT5G05220.1 (AT5G05220.1 unknown protein)

HSP 1 Score: 87.0 bits (214), Expect = 1.0e-17
Identity = 51/121 (42.15%), Postives = 71/121 (58.68%), Query Frame = 1


Query: 24  PSTAVFPKFRPTSAISSPWL----RRRGGAAVPRCVSQGG-WGGSVAELDIEEWLKLGRL 83
           PS  ++    P +AI    L    ++    A  RCV+ G  +  ++  +  EE  +L + 
Sbjct: 15  PSQRIYKTSSPVTAIPQTKLSLKVKKERWVAAARCVASGSDYAAAMEPITPEEEEELTQR 74

Query: 84  EEKCGGG-GKGLVELLECLEREAIMGEDEGRDPTDYDRRAKIFSTSSKVFQALKQHSDAA 139
              CGG   +G+ ELLECLE+EAIMG D+GRDP DY+RRAKIF  SSK+F+ L +  D A
Sbjct: 75  RGICGGEVNRGVWELLECLEKEAIMGNDDGRDPRDYNRRAKIFDKSSKIFKNLNEQRDQA 134

[Close]

BLAST of Lsi04G010080 vs. NCBI nr
Match: gi|778701594|ref|XP_011655051.1| (PREDICTED: uncharacterized protein LOC105435471 [Cucumis sativus])

HSP 1 Score: 214.2 bits (544), Expect = 1.5e-52
Identity = 111/145 (76.55%), Postives = 118/145 (81.38%), Query Frame = 1


Query: 1   MQFSASLIIPPPPPPPPPPSFHRPSTAVFPKFRPTSAISSPWLRRRGG--AAVPRCVSQG 60
           MQ SASLI      PPPPP  HRPSTA FP  RPT ++SSPWL  R     A PRCVSQG
Sbjct: 1   MQLSASLI-----SPPPPPLLHRPSTAFFPNLRPTPSLSSPWLCHRPAEAGAEPRCVSQG 60

Query: 61  GWGGSVA--ELDIEEWLKLGRLEEKCGGGGKGLVELLECLEREAIMGEDEGRDPTDYDRR 120
           GWG SV   E+DIEEWLKLGRLEEKCGGGGKG+VELLECLE+EAIMGEDEGRDPTDY+RR
Sbjct: 61  GWGSSVGVGEVDIEEWLKLGRLEEKCGGGGKGIVELLECLEKEAIMGEDEGRDPTDYNRR 120

Query: 121 AKIFSTSSKVFQALKQHSDAAPPPP 142
           AKIFSTSS+VFQALKQHSDA  PPP
Sbjct: 121 AKIFSTSSEVFQALKQHSDAVAPPP 140

[Close]

BLAST of Lsi04G010080 vs. NCBI nr
Match: gi|659114242|ref|XP_008456969.1| (PREDICTED: uncharacterized protein LOC103496760 [Cucumis melo])

HSP 1 Score: 210.7 bits (535), Expect = 1.7e-51
Identity = 108/143 (75.52%), Postives = 115/143 (80.42%), Query Frame = 1


Query: 1   MQFSASLIIPPPPPPPPPPSFHRPSTAVFPKFRPTSAISSPWLRRRGGAAV--PRCVSQG 60
           MQ SASLIIPPP          RPSTA FPK R T A+SSPWL  R   AV  PRCVSQG
Sbjct: 73  MQLSASLIIPPP--------LLRPSTAFFPKLRSTPALSSPWLGHRAAEAVVEPRCVSQG 132

Query: 61  GWGGSVAELDIEEWLKLGRLEEKCGGGGKGLVELLECLEREAIMGEDEGRDPTDYDRRAK 120
           GWG SVAE+DIEEWLKLGRLEEKCG GGKG+VELLECLE+EAIMGEDEGR+PTDY+RRAK
Sbjct: 133 GWGTSVAEVDIEEWLKLGRLEEKCGSGGKGIVELLECLEKEAIMGEDEGREPTDYNRRAK 192

Query: 121 IFSTSSKVFQALKQHSDAAPPPP 142
           IFSTSS+VFQALKQH D   PPP
Sbjct: 193 IFSTSSEVFQALKQHPDVVAPPP 207

[Close]

BLAST of Lsi04G010080 vs. NCBI nr
Match: gi|596048789|ref|XP_007220421.1| (hypothetical protein PRUPE_ppa012715mg [Prunus persica])

HSP 1 Score: 107.1 bits (266), Expect = 2.6e-20
Identity = 55/105 (52.38%), Postives = 73/105 (69.52%), Query Frame = 1


Query: 44  RRRGGAAVPRCVSQGGWGGSVAELD------------IEEWLKLGRLEEKCGGGGKGLVE 103
           ++   A V RCV  G   G V+E++             EEWL++GRL EKCG   +G+VE
Sbjct: 55  KKSSSAMVVRCVDTGCSSGPVSEIEGELETEIRPEDGAEEWLRVGRLREKCGD--RGMVE 114

Query: 104 LLECLEREAIMGEDEGRDPTDYDRRAKIFSTSSKVFQALKQHSDA 137
           LLECLEREAIMGEDEG++P+DY+RRA+IF  SS+VFQALK+ + +
Sbjct: 115 LLECLEREAIMGEDEGKEPSDYNRRAQIFYKSSRVFQALKERNQS 157

[Close]

BLAST of Lsi04G010080 vs. NCBI nr
Match: gi|645256908|ref|XP_008234167.1| (PREDICTED: uncharacterized protein LOC103333150 [Prunus mume])

HSP 1 Score: 104.8 bits (260), Expect = 1.3e-19
Identity = 54/105 (51.43%), Postives = 71/105 (67.62%), Query Frame = 1


Query: 44  RRRGGAAVPRCVSQGGWGGSVAELD------------IEEWLKLGRLEEKCGGGGKGLVE 103
           ++   A V RC   G   G V+E++             EEWL++GRL EKCG   +G+VE
Sbjct: 54  KKSTSAVVVRCADTGCSSGPVSEIEGELEAEIRPEDGAEEWLRVGRLREKCGD--RGMVE 113

Query: 104 LLECLEREAIMGEDEGRDPTDYDRRAKIFSTSSKVFQALKQHSDA 137
           LLECLEREAIMGEDEG++P DY+RRA+IF  SS+VFQALK+ + +
Sbjct: 114 LLECLEREAIMGEDEGKEPNDYNRRAQIFYKSSRVFQALKERNQS 156

[Close]

BLAST of Lsi04G010080 vs. NCBI nr
Match: gi|1009121684|ref|XP_015877592.1| (PREDICTED: uncharacterized protein LOC107414023 [Ziziphus jujuba])

HSP 1 Score: 102.1 bits (253), Expect = 8.5e-19
Identity = 67/139 (48.20%), Postives = 81/139 (58.27%), Query Frame = 1


Query: 19  PSF----HRPSTAVFPKFRPTSAISSPWLRRRG-------GAAVPRCVSQGGWGGSVAEL 78
           PSF    HRP     P          P L +R        G AV +C   G   G VAEL
Sbjct: 26  PSFLCQSHRPRHVTVPSLSTWRWKVGPSLLQREVDHHRLEGVAV-KCEKLGS--GYVAEL 85

Query: 79  DIE-----------EWLKLGRLEEKCGGGGKGLVELLECLEREAIMGEDEGRDPTDYDRR 136
           + E           EW++LGRL E CGG  KG+VELLECLEREAIMGED+GR+P DY+RR
Sbjct: 86  ERELQEEINPEEKAEWMRLGRLRENCGGR-KGVVELLECLEREAIMGEDQGREPNDYNRR 145

The following BLAST results are available for this feature:

BLAST of Lsi04G010080 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi04G010080 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQQ4_CUCSA	1.1e-52	76.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G223100 PE=4 SV=1	[more]
M5XRG8_PRUPE	1.8e-20	52.38	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012715mg PE=4 SV=1	[more]
A5B7T3_VITVI	1.7e-18	61.36	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0067g03180 PE=4 SV=...	[more]
W9RTQ0_9ROSA	2.2e-18	60.53	Uncharacterized protein OS=Morus notabilis GN=L484_002050 PE=4 SV=1	[more]
A0A0D2UGV0_GOSRA	1.9e-17	64.56	Uncharacterized protein OS=Gossypium raimondii GN=B456_010G219400 PE=4 SV=1	[more]

BLAST of Lsi04G010080 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G05220.1	1.0e-17	42.15	unknown protein	[more]

BLAST of Lsi04G010080 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778701594\|ref\|XP_011655051.1\|	1.5e-52	76.55	PREDICTED: uncharacterized protein LOC105435471 [Cucumis sativus]	[more]
gi\|659114242\|ref\|XP_008456969.1\|	1.7e-51	75.52	PREDICTED: uncharacterized protein LOC103496760 [Cucumis melo]	[more]
gi\|596048789\|ref\|XP_007220421.1\|	2.6e-20	52.38	hypothetical protein PRUPE_ppa012715mg [Prunus persica]	[more]
gi\|645256908\|ref\|XP_008234167.1\|	1.3e-19	51.43	PREDICTED: uncharacterized protein LOC103333150 [Prunus mume]	[more]
gi\|1009121684\|ref\|XP_015877592.1\|	8.5e-19	48.20	PREDICTED: uncharacterized protein LOC107414023 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G010080.1	Lsi04G010080.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37758	FAMILY NOT NAMED	coord: 1..139 score: 1.8
None	No IPR available	unknown	SSF101447	Formin homology 2 domain (FH2 domain)	coord: 10..20 score: 4.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi04G010080	Csa5G223100	Cucumber (Chinese Long) v2	culsiB369
Lsi04G010080	CSPI05G11690	Wild cucumber (PI 183967)	cpilsiB373
Lsi04G010080	MELO3C020169	Melon (DHL92) v3.5.1	lsimeB282
Lsi04G010080	ClCG07G005260	Watermelon (Charleston Gray)	lsiwcgB297
Lsi04G010080	MELO3C020169.2	Melon (DHL92) v3.6.1	lsimedB300
Lsi04G010080	Cla97C07G133630	Watermelon (97103) v2	lsiwmbB298
Lsi04G010080	CsGy5G008940	Cucumber (Gy14) v2	cgyblsiB338
Lsi04G010080	Carg00158	Silver-seed gourd	carlsiB605
Lsi04G010080	Carg24466	Silver-seed gourd	carlsiB828
Lsi04G010080	CsaV3_5G011110	Cucumber (Chinese Long) v3	cuclsiB394

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi04G010080	Silver-seed gourd	carlsiB242
Lsi04G010080	Watermelon (97103) v2	lsiwmbB270
Lsi04G010080	Wax gourd	lsiwgoB381
Lsi04G010080	Bottle gourd (USVL1VR-Ls)	lsilsiB128
Lsi04G010080	Cucumber (Gy14) v1	cgylsiB232
Lsi04G010080	Cucurbita maxima (Rimu)	cmalsiB671
Lsi04G010080	Cucurbita maxima (Rimu)	cmalsiB672
Lsi04G010080	Cucurbita moschata (Rifu)	cmolsiB662
Lsi04G010080	Cucurbita moschata (Rifu)	cmolsiB663
Lsi04G010080	Cucurbita pepo (Zucchini)	cpelsiB149
Lsi04G010080	Cucurbita pepo (Zucchini)	cpelsiB354
Lsi04G010080	Cucurbita pepo (Zucchini)	cpelsiB355
Lsi04G010080	Watermelon (97103) v1	lsiwmB306