CsGy5G008940 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy5G008940
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Voltage-dependent T-type calcium channel subunit alpha-1I, putative
Location	Chr5 : 6947506 .. 6947946 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAACTCTCAGCATCTCTCATATCTCCACCACCTCCTCCCCTCCTCCACCGCCCCTCCACCGCCTTCTTCCCCAACCTCAGGCCAACTCCATCCCTTTCCTCACCATGGCTCTGCCATCGACCTGCGGAGGCAGGGGCAGAGCCAAGATGTGTTAGTCAGGGTGGATGGGGAAGCTCTGTGGGTGTGGGGGAGGTGGACATAGAAGAGTGGCTGAAGCTAGGGAGATTGGAGGAGAAGTGCGGCGGCGGAGGAAAGGGAATTGTGGAGCTACTTGAATGTTTGGAAAAAGAAGCCATTATGGGAGAAGATGAAGGGAGAGACCCAACAGATTATAATAGAAGAGCTAAGATTTTCAGTACCAGTTCTGAAGTTTTCCAAGCTCTCAAGCAACATTCTGACGCTGTTGCTCCTCCTCCTTCTCCTCCTCACCATTCTTGA

mRNA sequence

ATGCAACTCTCAGCATCTCTCATATCTCCACCACCTCCTCCCCTCCTCCACCGCCCCTCCACCGCCTTCTTCCCCAACCTCAGGCCAACTCCATCCCTTTCCTCACCATGGCTCTGCCATCGACCTGCGGAGGCAGGGGCAGAGCCAAGATGTGTTAGTCAGGGTGGATGGGGAAGCTCTGTGGGTGTGGGGGAGGTGGACATAGAAGAGTGGCTGAAGCTAGGGAGATTGGAGGAGAAGTGCGGCGGCGGAGGAAAGGGAATTGTGGAGCTACTTGAATGTTTGGAAAAAGAAGCCATTATGGGAGAAGATGAAGGGAGAGACCCAACAGATTATAATAGAAGAGCTAAGATTTTCAGTACCAGTTCTGAAGTTTTCCAAGCTCTCAAGCAACATTCTGACGCTGTTGCTCCTCCTCCTTCTCCTCCTCACCATTCTTGA

Coding sequence (CDS)

ATGCAACTCTCAGCATCTCTCATATCTCCACCACCTCCTCCCCTCCTCCACCGCCCCTCCACCGCCTTCTTCCCCAACCTCAGGCCAACTCCATCCCTTTCCTCACCATGGCTCTGCCATCGACCTGCGGAGGCAGGGGCAGAGCCAAGATGTGTTAGTCAGGGTGGATGGGGAAGCTCTGTGGGTGTGGGGGAGGTGGACATAGAAGAGTGGCTGAAGCTAGGGAGATTGGAGGAGAAGTGCGGCGGCGGAGGAAAGGGAATTGTGGAGCTACTTGAATGTTTGGAAAAAGAAGCCATTATGGGAGAAGATGAAGGGAGAGACCCAACAGATTATAATAGAAGAGCTAAGATTTTCAGTACCAGTTCTGAAGTTTTCCAAGCTCTCAAGCAACATTCTGACGCTGTTGCTCCTCCTCCTTCTCCTCCTCACCATTCTTGA

Protein sequence

MQLSASLISPPPPPLLHRPSTAFFPNLRPTPSLSSPWLCHRPAEAGAEPRCVSQGGWGSSVGVGEVDIEEWLKLGRLEEKCGGGGKGIVELLECLEKEAIMGEDEGRDPTDYNRRAKIFSTSSEVFQALKQHSDAVAPPPSPPHHS

Homology

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BLAST of CsGy5G008940 vs. NCBI nr
Match: XP_011655051.1 (PREDICTED: uncharacterized protein LOC105435471 [Cucumis sativus] >KGN50752.1 hypothetical protein Csa_5G223100 [Cucumis sativus])

HSP 1 Score: 292.4 bits (747), Expect = 8.8e-76
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MQLSASLISPXXXXLLHRPSTAFFPNLRPTPSLSSPWLCHRPAEAGAEPRCVSQGGWGSS 60
           MQLSASLISPXXXXLLHRPSTAFFPNLRPTPSLSSPWLCHRPAEAGAEPRCVSQGGWGSS
Sbjct: 1   MQLSASLISPXXXXLLHRPSTAFFPNLRPTPSLSSPWLCHRPAEAGAEPRCVSQGGWGSS 60

Query: 61  VGVGEVDIEEWLKLGRLEEKCGGGGKGIVELLECLEKEAIMGEDEGRDPTDYNRRAKIFS 120
           VGVGEVDIEEWLKLGRLEEKCGGGGKGIVELLECLEKEAIMGEDEGRDPTDYNRRAKIFS
Sbjct: 61  VGVGEVDIEEWLKLGRLEEKCGGGGKGIVELLECLEKEAIMGEDEGRDPTDYNRRAKIFS 120

Query: 121 TSSEVFQALKQHSDAVAPPPSPPHHS 147
           TSSEVFQALKQHSDAVAPPPSPPHHS
Sbjct: 121 TSSEVFQALKQHSDAVAPPPSPPHHS 146

[Close]

BLAST of CsGy5G008940 vs. NCBI nr
Match: XP_008456969.1 (PREDICTED: uncharacterized protein LOC103496760 [Cucumis melo])

HSP 1 Score: 218.4 bits (555), Expect = 1.6e-53
Identity = 113/134 (84.33%), Postives = 116/134 (86.57%), Query Frame = 0


Query: 1   MQLSASLISPXXXXLLHRPSTAFFPNLRPTPSLSSPWLCHRPAEAGAEPRCVSQGGWGSS 60
           MQLSASLI P     L RPSTAFFP LR TP+LSSPWL HR AEA  EPRCVSQGGWG+S
Sbjct: 73  MQLSASLIIPPP---LLRPSTAFFPKLRSTPALSSPWLGHRAAEAVVEPRCVSQGGWGTS 132

Query: 61  VGVGEVDIEEWLKLGRLEEKCGGGGKGIVELLECLEKEAIMGEDEGRDPTDYNRRAKIFS 120
             V EVDIEEWLKLGRLEEKCG GGKGIVELLECLEKEAIMGEDEGR+PTDYNRRAKIFS
Sbjct: 133 --VAEVDIEEWLKLGRLEEKCGSGGKGIVELLECLEKEAIMGEDEGREPTDYNRRAKIFS 192

Query: 121 TSSEVFQALKQHSD 135
           TSSEVFQALKQH D
Sbjct: 193 TSSEVFQALKQHPD 201

[Close]

BLAST of CsGy5G008940 vs. NCBI nr
Match: XP_023547061.1 (uncharacterized protein LOC111805978 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 197.2 bits (500), Expect = 3.9e-47
Identity = 102/137 (74.45%), Postives = 108/137 (78.83%), Query Frame = 0


Query: 4   SASL-ISPXXXXLLHRPSTAFFPNLRPTPSLSSPWLCHRPAEAGAEPRCVSQGGWGSSVG 63
           SASL I P     LHR ST  FP LRP  ++S PW C R   A A PRCVSQGGWG S  
Sbjct: 60  SASLIIPPPSPPFLHRSSTVGFPKLRPISAISPPWFCRR--VAAAAPRCVSQGGWGGS-- 119

Query: 64  VGEVDIEEWLKLGRLEEKCGGGGKGIVELLECLEKEAIMGEDEGRDPTDYNRRAKIFSTS 123
           V E +IEEWLKLGRLEEKCGGGGKG+VELLECLE+EAIMGEDEGR+PTDYNRRAKIFSTS
Sbjct: 120 VAEPEIEEWLKLGRLEEKCGGGGKGVVELLECLEREAIMGEDEGREPTDYNRRAKIFSTS 179

Query: 124 SEVFQALKQHSDAVAPP 140
           SEVFQALKQHSDA   P
Sbjct: 180 SEVFQALKQHSDAAPDP 192

[Close]

BLAST of CsGy5G008940 vs. NCBI nr
Match: XP_022942933.1 (uncharacterized protein LOC111447817 [Cucurbita moschata])

HSP 1 Score: 194.9 bits (494), Expect = 1.9e-46
Identity = 101/139 (72.66%), Postives = 109/139 (78.42%), Query Frame = 0


Query: 3   LSASLIS-PXXXXLLHRPSTAFFPNLRPTPSLSSPWLCHRPAEAGAEPRCVSQGGWGSSV 62
           +SASLI+ P      HR ST  F  LRP  ++S  WLC R   A A PRCVSQGGWG S 
Sbjct: 4   VSASLITPPPSPPFFHRSSTVVFHKLRPISAISPSWLCRR--VAAAAPRCVSQGGWGGS- 63

Query: 63  GVGEVDIEEWLKLGRLEEKCGGGGKGIVELLECLEKEAIMGEDEGRDPTDYNRRAKIFST 122
            V E +IEEWLKLGRLEEKCGGGGKG+VELLECLE+EAIMGEDEGR+PTDYNRRAKIFST
Sbjct: 64  -VAEPEIEEWLKLGRLEEKCGGGGKGVVELLECLEREAIMGEDEGREPTDYNRRAKIFST 123

Query: 123 SSEVFQALKQHSDAVAPPP 141
           SSEVFQALKQHSDA   PP
Sbjct: 124 SSEVFQALKQHSDAAPDPP 138

[Close]

BLAST of CsGy5G008940 vs. NCBI nr
Match: XP_022988679.1 (uncharacterized protein LOC111485933 [Cucurbita maxima])

HSP 1 Score: 194.9 bits (494), Expect = 1.9e-46
Identity = 99/138 (71.74%), Postives = 108/138 (78.26%), Query Frame = 0


Query: 3   LSASL-ISPXXXXLLHRPSTAFFPNLRPTPSLSSPWLCHRPAEAGAEPRCVSQGGWGSSV 62
           +SASL I P      HR ST  FP +RP  ++S PW C R   A A PRCVSQGGWG S 
Sbjct: 4   VSASLIIPPPSPSFFHRSSTVVFPKIRPISAISPPWFCRR--VAAAAPRCVSQGGWGGS- 63

Query: 63  GVGEVDIEEWLKLGRLEEKCGGGGKGIVELLECLEKEAIMGEDEGRDPTDYNRRAKIFST 122
            V E +IEEWLKLGRL+EKCGGGGKG+VELLECLE+EAIMGEDEGR+PTDYNRRAKIFST
Sbjct: 64  -VAEQEIEEWLKLGRLDEKCGGGGKGVVELLECLEREAIMGEDEGREPTDYNRRAKIFST 123

Query: 123 SSEVFQALKQHSDAVAPP 140
           SSEVFQALKQHSDA   P
Sbjct: 124 SSEVFQALKQHSDAAPDP 137

[Close]

BLAST of CsGy5G008940 vs. TAIR10
Match: AT5G05220.1 (unknown protein)

HSP 1 Score: 80.1 bits (196), Expect = 1.2e-15
Identity = 50/130 (38.46%), Postives = 70/130 (53.85%), Query Frame = 0


Query: 8   ISPXXXXLLHRPSTAFFPNLRPTPSLSSPWLCHRPAEAG--AEPRCVSQGGWGSSVGVGE 67
           IS     ++  PS   +    P  ++    L  +  +    A  RCV+ G    +  +  
Sbjct: 4   ISQTCTKIITNPSQRIYKTSSPVTAIPQTKLSLKVKKERWVAAARCVASGS-DYAAAMEP 63

Query: 68  VDIEEWLKLGRLEEKCGGG-GKGIVELLECLEKEAIMGEDEGRDPTDYNRRAKIFSTSSE 127
           +  EE  +L +    CGG   +G+ ELLECLEKEAIMG D+GRDP DYNRRAKIF  SS+
Sbjct: 64  ITPEEEEELTQRRGICGGEVNRGVWELLECLEKEAIMGNDDGRDPRDYNRRAKIFDKSSK 123

Query: 128 VFQALKQHSD 135
           +F+ L +  D
Sbjct: 124 IFKNLNEQRD 132

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BLAST of CsGy5G008940 vs. TrEMBL
Match: tr|A0A0A0KQQ4|A0A0A0KQQ4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G223100 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 5.8e-76
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MQLSASLISPXXXXLLHRPSTAFFPNLRPTPSLSSPWLCHRPAEAGAEPRCVSQGGWGSS 60
           MQLSASLISPXXXXLLHRPSTAFFPNLRPTPSLSSPWLCHRPAEAGAEPRCVSQGGWGSS
Sbjct: 1   MQLSASLISPXXXXLLHRPSTAFFPNLRPTPSLSSPWLCHRPAEAGAEPRCVSQGGWGSS 60

Query: 61  VGVGEVDIEEWLKLGRLEEKCGGGGKGIVELLECLEKEAIMGEDEGRDPTDYNRRAKIFS 120
           VGVGEVDIEEWLKLGRLEEKCGGGGKGIVELLECLEKEAIMGEDEGRDPTDYNRRAKIFS
Sbjct: 61  VGVGEVDIEEWLKLGRLEEKCGGGGKGIVELLECLEKEAIMGEDEGRDPTDYNRRAKIFS 120

Query: 121 TSSEVFQALKQHSDAVAPPPSPPHHS 147
           TSSEVFQALKQHSDAVAPPPSPPHHS
Sbjct: 121 TSSEVFQALKQHSDAVAPPPSPPHHS 146

[Close]

BLAST of CsGy5G008940 vs. TrEMBL
Match: tr|A0A1S3C540|A0A1S3C540_CUCME (uncharacterized protein LOC103496760 OS=Cucumis melo OX=3656 GN=LOC103496760 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.1e-53
Identity = 113/134 (84.33%), Postives = 116/134 (86.57%), Query Frame = 0


Query: 1   MQLSASLISPXXXXLLHRPSTAFFPNLRPTPSLSSPWLCHRPAEAGAEPRCVSQGGWGSS 60
           MQLSASLI P     L RPSTAFFP LR TP+LSSPWL HR AEA  EPRCVSQGGWG+S
Sbjct: 73  MQLSASLIIPPP---LLRPSTAFFPKLRSTPALSSPWLGHRAAEAVVEPRCVSQGGWGTS 132

Query: 61  VGVGEVDIEEWLKLGRLEEKCGGGGKGIVELLECLEKEAIMGEDEGRDPTDYNRRAKIFS 120
             V EVDIEEWLKLGRLEEKCG GGKGIVELLECLEKEAIMGEDEGR+PTDYNRRAKIFS
Sbjct: 133 --VAEVDIEEWLKLGRLEEKCGSGGKGIVELLECLEKEAIMGEDEGREPTDYNRRAKIFS 192

Query: 121 TSSEVFQALKQHSD 135
           TSSEVFQALKQH D
Sbjct: 193 TSSEVFQALKQHPD 201

[Close]

BLAST of CsGy5G008940 vs. TrEMBL
Match: tr|A0A218XQS5|A0A218XQS5_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr022438 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.2e-19
Identity = 63/116 (54.31%), Postives = 78/116 (67.24%), Query Frame = 0


Query: 26  NLRPTPSLSSPWLCHRPAEAGAEPRCVSQGGWGSSVGVGEVDIEEWLKLGRLEEKCGGGG 85
           NL   PS S   L  RP +A    RCV+  G GS VGV    + E  ++GR  EKC  GG
Sbjct: 25  NLVQAPSPSLVKLRGRP-KAVVAARCVAPSG-GSVVGVERELVVEGEEMGRWVEKC--GG 84

Query: 86  KGIVELLECLEKEAIMGEDEGRDPTDYNRRAKIFSTSSEVFQALKQHSDAVAPPPS 142
           +G+VELLECLE+EAIMGEDEG++P DYNRRA+IF  SS VF+AL++   A +P PS
Sbjct: 85  QGVVELLECLEREAIMGEDEGKEPHDYNRRARIFEKSSRVFRALREGEAAPSPGPS 136

[Close]

BLAST of CsGy5G008940 vs. TrEMBL
Match: tr|M5XRG8|M5XRG8_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G265400 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.5e-18
Identity = 57/116 (49.14%), Postives = 75/116 (64.66%), Query Frame = 0


Query: 32  SLSSPWLCHRPAEAGAEPRCVSQGGWGSSVGVGEVD------------IEEWLKLGRLEE 91
           SL    + H+ + +    RCV  G   SS  V E++             EEWL++GRL E
Sbjct: 46  SLMQQRVDHKKSSSAMVVRCVDTG--CSSGPVSEIEGELETEIRPEDGAEEWLRVGRLRE 105

Query: 92  KCGGGGKGIVELLECLEKEAIMGEDEGRDPTDYNRRAKIFSTSSEVFQALKQHSDA 136
           KC  G +G+VELLECLE+EAIMGEDEG++P+DYNRRA+IF  SS VFQALK+ + +
Sbjct: 106 KC--GDRGMVELLECLEREAIMGEDEGKEPSDYNRRAQIFYKSSRVFQALKERNQS 157

[Close]

BLAST of CsGy5G008940 vs. TrEMBL
Match: tr|A0A2P5DCX1|A0A2P5DCX1_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_075780 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 7.2e-18
Identity = 46/69 (66.67%), Postives = 55/69 (79.71%), Query Frame = 0


Query: 70  EWLKLGRLEEKCGGGGKGIVELLECLEKEAIMGEDEGRDPTDYNRRAKIFSTSSEVFQAL 129
           EW+K G L EKC GGG+G+VELLECLE+EAIMGED GR+P DYNRRA+IF  S+ VFQAL
Sbjct: 94  EWMKAGSLREKC-GGGRGVVELLECLEREAIMGEDHGREPNDYNRRAQIFDRSARVFQAL 153

Query: 130 KQHSDAVAP 139
           K+ +    P
Sbjct: 154 KESTGTSTP 161

The following BLAST results are available for this feature:

BLAST of CsGy5G008940 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011655051.1	8.8e-76	100.00	PREDICTED: uncharacterized protein LOC105435471 [Cucumis sativus] >KGN50752.1 hy...	[more]
XP_008456969.1	1.6e-53	84.33	PREDICTED: uncharacterized protein LOC103496760 [Cucumis melo]	[more]
XP_023547061.1	3.9e-47	74.45	uncharacterized protein LOC111805978 [Cucurbita pepo subsp. pepo]	[more]
XP_022942933.1	1.9e-46	72.66	uncharacterized protein LOC111447817 [Cucurbita moschata]	[more]
XP_022988679.1	1.9e-46	71.74	uncharacterized protein LOC111485933 [Cucurbita maxima]	[more]

BLAST of CsGy5G008940 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G05220.1	1.2e-15	38.46	unknown protein	[more]

BLAST of CsGy5G008940 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy5G008940 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KQQ4\|A0A0A0KQQ4_CUCSA	5.8e-76	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G223100 PE=4 SV=1	[more]
tr\|A0A1S3C540\|A0A1S3C540_CUCME	1.1e-53	84.33	uncharacterized protein LOC103496760 OS=Cucumis melo OX=3656 GN=LOC103496760 PE=...	[more]
tr\|A0A218XQS5\|A0A218XQS5_PUNGR	2.2e-19	54.31	Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr022438 PE=4 SV=1	[more]
tr\|M5XRG8\|M5XRG8_PRUPE	1.5e-18	49.14	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G265400 PE=4 SV=1	[more]
tr\|A0A2P5DCX1\|A0A2P5DCX1_PARAD	7.2e-18	66.67	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_075780 PE...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G008940.1	CsGy5G008940.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37758	FAMILY NOT NAMED	coord: 70..135

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy5G008940	Csa5G223100	Cucumber (Chinese Long) v2	cgybcuB224
CsGy5G008940	MELO3C020169	Melon (DHL92) v3.5.1	cgybmeB320
CsGy5G008940	ClCG07G005260	Watermelon (Charleston Gray)	cgybwcgB369
CsGy5G008940	CSPI05G11690	Wild cucumber (PI 183967)	cgybcpiB226
CsGy5G008940	CmaCh04G010560	Cucurbita maxima (Rimu)	cgybcmaB673
CsGy5G008940	Lsi04G010080	Bottle gourd (USVL1VR-Ls)	cgyblsiB338
CsGy5G008940	MELO3C020169.2	Melon (DHL92) v3.6.1	cgybmedB311
CsGy5G008940	CsaV3_5G011110	Cucumber (Chinese Long) v3	cgybcucB232
CsGy5G008940	Cla97C07G133630	Watermelon (97103) v2	cgybwmbB375
CsGy5G008940	Bhi07G000404	Wax gourd	cgybwgoB487
CsGy5G008940	Carg24466	Silver-seed gourd	carcgybB0898
CsGy5G008940	Carg00158	Silver-seed gourd	carcgybB0670

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy5G008940	Watermelon (97103) v2	cgybwmbB347
CsGy5G008940	Cucurbita maxima (Rimu)	cgybcmaB674
CsGy5G008940	Cucurbita moschata (Rifu)	cgybcmoB651
CsGy5G008940	Cucurbita moschata (Rifu)	cgybcmoB652
CsGy5G008940	Cucurbita pepo (Zucchini)	cgybcpeB646
CsGy5G008940	Cucurbita pepo (Zucchini)	cgybcpeB647
CsGy5G008940	Watermelon (97103) v1	cgybwmB359