Lsi04G005140 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi04G005140
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionThiol-disulfide oxidoreductase DCC
Locationchr04 : 4767657 .. 4770075 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAGAAACAGAGAAAACCGCCGGTGATGATCGTTCCAAAATGACGAGCAAACTTCTGACGAATCGACTTCGGCACCTATTGTTCACATCAACATCAACAGCGACAACCAGACCCACCTCCTTTACAATTACTTCTTCTTCTTCTTCCCCATTTCGATGCGTATTTTTTTCTAAATTTTCATCACCGTCAGAGTCTTCTTCCGGCATCGATTGCTCTACTGCCGCGCCTGCGGATATCGCCGATGTTCCTGAAGAAGTTGATGAGGACTTTGTCGACGCCGTCTCTCCTGCTGCTGCTGCTGCGAATTCTTCGGCTGTCGAGCCTGTGTTTCCTACTCTCCTCCAGCCTCGCGTTGTTGTCTATGACGGTGTCTGCCATCTCTGCCACCGGGGTTCGATCTCTTTTTTCTCTCTCTCTCTCTCTCTCGAAATCGCTCTGTTTACAGTTTCATTCTGATTGCTCTGTTTCATGAGAATGTGCCATGCTACCACTGTTGTATCATTCAAAGAACTCATGCTTGTGCATAATCAGATTGTCATTTTCTTGTATATTTCATAGTCAGAACCACTCCGACTTTTAGGTTTTTGCCTTAATCTTGTGGCATCTTTTACTTTTCCTTTTTTTTTTTTTTTTTTTGGTGGCGCTTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTGGGTGGCGCTTTGAATTTCTTTCCCTCGTCTTTTCACACTATGAACTGTTCGACATTGGTACCGCCCAACTCTTGGAGGAGTTTGATGGCTGTAACGGGAGCCTGTTAATCTGTGAAAGGAATTCCGTCTCTAATTTTTATAGCCGCATCCCTTTTTGGTGTGGTACTTATTGTTATTTGTTGGAGAAAGAAGGAAACAAATCTTCCCACACTATTAAATTCTACTGAACTCCAAGGTGATGATTGGAAGTTTAGTCCAAAGTTGGATTACGGGTTCCACGATTTTTAGTTTTACATTGTGTTTCTATGTCATTTCACTTCCAGACTTCCAGTATGCTCAAATTCTTGGAGGCTGTACTAGGACATTCTGTATCTTTCCCTCCAATCCTTGTGTCTATATCTTGTTCTCTTCATCGCTAAAATTTGCAGGTGTGAAGTGGGTTATAAAAGTGGACAAATATAAGAAGATCAAATTTTGCTGCCTTCAGTCCAAAGCTGCTGAACCATACTTGAGAGTGAGTGGTCTAGACAGAGAGGATGTTTGCCGTCGCTTTGTGTTCATCGAGGGCCATGGTTCATACCACCAAGCTTCCACCGGTACTTAACCTCCTTGACTAACAACAGTTAAAATATTCAACTGATAACTTTGATCTTTTCCTTTATTTTATAACTGGTTGTGGATATCTAACTCGGTCTTTCATTTCCACATAACACCCAAGATTCATTGCCACAGTTAATAAAGTATTTTAGAAAGGAGATTGCCTTCTTCTCTTCTTCTATTTGGAGTAGTGTAGATCGACTTATAACCACTGCTGTAACAGAGCTTTTGTCAAAACGTATATTGTTCCCTTCTCTACTTCCTGATTTTAGCAATATAATCATTTGAGCACATTGTAATTTTGCAGCTGCTCTGAGGGTATTGTCCTATTTGCCTCTTCCTTACTCAGCTTTGAGCGCATTCTTGATAATCCCAACTCCTCTTAGAGACGGTATCTATGACACCGTTGCCAGACATCGTTATGACATGTTCGGAAAGGCCGAAGACTGCTTGGTTTTGCAAGAGGAAGAGCTGCTTGAGCGTTTCATTGACAGGCAGGAACTGCTTAATCAACGCCATCGGTAAGGTTTCTCTTGTGGACATGGAAATTGTAAATGTTAGTCTTCCGCTTACCTCCCCTCTTTTGGACTAAACAACCTGATATGATGAAAGTACTAGTAGGAAGGCGAGTTGGTAAAATGCCCACCCGTAACCCAGCGGTGCAATTTGAAAATAAAAAAATTCTTTCATGGGATTTCTCC

mRNA sequence

CAGAAACAGAGAAAACCGCCGGTGATGATCGTTCCAAAATGACGAGCAAACTTCTGACGAATCGACTTCGGCACCTATTGTTCACATCAACATCAACAGCGACAACCAGACCCACCTCCTTTACAATTACTTCTTCTTCTTCTTCCCCATTTCGATGCGTATTTTTTTCTAAATTTTCATCACCGTCAGAGTCTTCTTCCGGCATCGATTGCTCTACTGCCGCGCCTGCGGATATCGCCGATGTTCCTGAAGAAGTTGATGAGGACTTTGTCGACGCCGTCTCTCCTGCTGCTGCTGCTGCGAATTCTTCGGCTGTCGAGCCTGTGTTTCCTACTCTCCTCCAGCCTCGCGTTGTTGTCTATGACGGTGTCTGCCATCTCTGCCACCGGGGTGTGAAGTGGGTTATAAAAGTGGACAAATATAAGAAGATCAAATTTTGCTGCCTTCAGTCCAAAGCTGCTGAACCATACTTGAGAGTGAGTGGTCTAGACAGAGAGGATGTTTGCCGTCGCTTTGTGTTCATCGAGGGCCATGGTTCATACCACCAAGCTTCCACCGCTGCTCTGAGGGTATTGTCCTATTTGCCTCTTCCTTACTCAGCTTTGAGCGCATTCTTGATAATCCCAACTCCTCTTAGAGACGGTATCTATGACACCGTTGCCAGACATCGTTATGACATGTTCGGAAAGGCCGAAGACTGCTTGGTTTTGCAAGAGGAAGAGCTGCTTGAGCGTTTCATTGACAGGCAGGAACTGCTTAATCAACGCCATCGGTAAGGTTTCTCTTGTGGACATGGAAATTGTAAATGTTAGTCTTCCGCTTACCTCCCCTCTTTTGGACTAAACAACCTGATATGATGAAAGTACTAGTAGGAAGGCGAGTTGGTAAAATGCCCACCCGTAACCCAGCGGTGCAATTTGAAAATAAAAAAATTCTTTCATGGGATTTCTCC

Coding sequence (CDS)

ATGACGAGCAAACTTCTGACGAATCGACTTCGGCACCTATTGTTCACATCAACATCAACAGCGACAACCAGACCCACCTCCTTTACAATTACTTCTTCTTCTTCTTCCCCATTTCGATGCGTATTTTTTTCTAAATTTTCATCACCGTCAGAGTCTTCTTCCGGCATCGATTGCTCTACTGCCGCGCCTGCGGATATCGCCGATGTTCCTGAAGAAGTTGATGAGGACTTTGTCGACGCCGTCTCTCCTGCTGCTGCTGCTGCGAATTCTTCGGCTGTCGAGCCTGTGTTTCCTACTCTCCTCCAGCCTCGCGTTGTTGTCTATGACGGTGTCTGCCATCTCTGCCACCGGGGTGTGAAGTGGGTTATAAAAGTGGACAAATATAAGAAGATCAAATTTTGCTGCCTTCAGTCCAAAGCTGCTGAACCATACTTGAGAGTGAGTGGTCTAGACAGAGAGGATGTTTGCCGTCGCTTTGTGTTCATCGAGGGCCATGGTTCATACCACCAAGCTTCCACCGCTGCTCTGAGGGTATTGTCCTATTTGCCTCTTCCTTACTCAGCTTTGAGCGCATTCTTGATAATCCCAACTCCTCTTAGAGACGGTATCTATGACACCGTTGCCAGACATCGTTATGACATGTTCGGAAAGGCCGAAGACTGCTTGGTTTTGCAAGAGGAAGAGCTGCTTGAGCGTTTCATTGACAGGCAGGAACTGCTTAATCAACGCCATCGGTAA

Protein sequence

MTSKLLTNRLRHLLFTSTSTATTRPTSFTITSSSSSPFRCVFFSKFSSPSESSSGIDCSTAAPADIADVPEEVDEDFVDAVSPAAAAANSSAVEPVFPTLLQPRVVVYDGVCHLCHRGVKWVIKVDKYKKIKFCCLQSKAAEPYLRVSGLDREDVCRRFVFIEGHGSYHQASTAALRVLSYLPLPYSALSAFLIIPTPLRDGIYDTVARHRYDMFGKAEDCLVLQEEELLERFIDRQELLNQRHR
Homology
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BLAST of Lsi04G005140 vs. Swiss-Prot
Match: YUXK_BACSU (Uncharacterized protein YuxK OS=Bacillus subtilis (strain 168) GN=yuxK PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 7.2e-18
Identity = 53/133 (39.85%), Postives = 80/133 (60.15%), Query Frame = 1 

Query: 104 RVVVYDGVCHLCHRGVKWVIKVDKYKKIKFCCLQSKAAEPYLRVSGL--DREDVCRRFVF 163
           RV+++DGVC+LC+  V+++IK D    I F  LQS+  +  L+ SGL  DR D    FVF
Sbjct: 9   RVLLFDGVCNLCNGAVQFIIKRDPDGLISFTSLQSETGQSLLKKSGLPTDRFD---SFVF 68

Query: 164 IEGHGSYHQASTAALRVLSYLPLPYSALSAFLIIPTPLRDGIYDTVARHRYDMFGKAEDC 223
           IE  G  +  STAA++V  +L  P+     F  +P P+RD +Y  +A++RY  FGK  +C
Sbjct: 69  IED-GQVYTKSTAAIKVFRHLRGPWRLFVLFFAVPKPVRDMVYSFIAKNRYKWFGKKNEC 128

Query: 224 LVLQEEELLERFI 235
           + L    + +RF+
Sbjct: 129 M-LPSPSIKKRFL 136

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BLAST of Lsi04G005140 vs. Swiss-Prot
Match: Y1259_ARATH (DCC family protein At1g52590, chloroplastic OS=Arabidopsis thaliana GN=At1g52590 PE=2 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 6.8e-16
Identity = 46/118 (38.98%), Postives = 75/118 (63.56%), Query Frame = 1 

Query: 105 VVVYDGVCHLCHRGVKWVIKVDKYKKIKFCCLQSKAAEPYLRVSGLDREDVCRRFVFIEG 164
           ++++DGVC+LC+ GVK+V   D+ + I+F  LQS+A +  L  SG   +D+    V +E 
Sbjct: 55  IMLFDGVCNLCNGGVKFVRDHDRNRSIRFEALQSEAGKKLLLRSGRAPDDI-SSVVLVEN 114

Query: 165 HGSYHQASTAALRVLSYLPLPYSALSAFL-IIPTPLRDGIYDTVARHRYDMFGKAEDC 222
             SY + S A L+++ Y+ LP+  L+ FL   P  +RD +Y+ VA +RY MFG+++ C
Sbjct: 115 DRSYIK-SEAVLKIMKYIDLPFPQLAFFLQFAPLFVRDFLYENVANNRYAMFGRSDSC 170

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BLAST of Lsi04G005140 vs. TrEMBL
Match: A0A0A0KVQ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G603330 PE=4 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 3.0e-103
Identity = 207/245 (84.49%), Postives = 216/245 (88.16%), Query Frame = 1 

Query: 1   MTSKLLTNRLRHLLFTSTSTATTRPTSFTITSSSSSPFRCVFFSKFSSPSESSSGIDCST 60
           M SKLL+NR R L+ TST  AT RPTSFT TS S S FR VF SKFSSP  SS GIDCST
Sbjct: 1   MASKLLSNRFRQLVLTST--ATIRPTSFT-TSFSFSSFRRVFSSKFSSPLSSSFGIDCST 60

Query: 61  AAPADIADVPEEVDEDFVDAVSPAAAAANSSAVEPVFPTLLQPRVVVYDGVCHLCHRGVK 120
           AAPADIADVPEEV +D+VD VSPA A  NS A EPVFPTLLQPRVV+YDGVCHLCHRGVK
Sbjct: 61  AAPADIADVPEEVVKDYVDVVSPAVAV-NSLAAEPVFPTLLQPRVVIYDGVCHLCHRGVK 120

Query: 121 WVIKVDKYKKIKFCCLQSKAAEPYLRVSGLDREDVCRRFVFIEGHGSYHQASTAALRVLS 180
           WVIKVDKYKKIKFCCLQSK AEPYLR+SGLDREDV  RFVFIEGHGSYHQASTAALRVLS
Sbjct: 121 WVIKVDKYKKIKFCCLQSKTAEPYLRLSGLDREDVSHRFVFIEGHGSYHQASTAALRVLS 180

Query: 181 YLPLPYSALSAFLIIPTPLRDGIYDTVARHRYDMFGKAEDCLVLQEEELLERFIDRQELL 240
           YLPLPYSALSAFLIIPTPLRD IYDTVARHRYDMF KAE CLVLQ+EELLERFIDR+ELL
Sbjct: 181 YLPLPYSALSAFLIIPTPLRDSIYDTVARHRYDMFVKAEGCLVLQDEELLERFIDREELL 240

Query: 241 NQRHR 246
           NQRH+
Sbjct: 241 NQRHQ 241

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BLAST of Lsi04G005140 vs. TrEMBL
Match: A0A067JEX1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21774 PE=4 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 1.4e-68
Identity = 152/233 (65.24%), Postives = 175/233 (75.11%), Query Frame = 1 

Query: 18  TSTATTRPTSFTITSSSSSP---FRCVFFSKFSS---PSESSSGIDCSTAAPADIADVPE 77
           T+T+T R   F  +SSS S     +C  FS FSS   P  S + I   TAA   +ADV  
Sbjct: 10  TATSTPRNAQFFSSSSSFSSSCLLKCSLFSSFSSSSFPFPSPTDIVSDTAAA--VADVVP 69

Query: 78  EVDEDFVDAVSPAAAAANSSAVEPVF-PTLLQPRVVVYDGVCHLCHRGVKWVIKVDKYKK 137
           E ++     VS       SS V+PV  PTLLQPRVVVYDGVCHLCHRGVKWVIK DKY+K
Sbjct: 70  EAEDLLYPDVSI------SSTVKPVTAPTLLQPRVVVYDGVCHLCHRGVKWVIKADKYRK 129

Query: 138 IKFCCLQSKAAEPYLRVSGLDREDVCRRFVFIEGHGSYHQASTAALRVLSYLPLPYSALS 197
           IKFCCLQSKAAEPYLR+ GLDREDV RRF+FIEG G YHQASTAALRVL+YLPLPYSALS
Sbjct: 130 IKFCCLQSKAAEPYLRLCGLDREDVLRRFLFIEGLGQYHQASTAALRVLAYLPLPYSALS 189

Query: 198 AFLIIPTPLRDGIYDTVARHRYDMFGKAEDCLVLQEEELLERFIDRQELLNQR 244
             LI+PTPLRD +YD +AR RYD FGKAEDCLVL+++ELLERFIDR E++++R
Sbjct: 190 TLLIVPTPLRDAVYDHIARRRYDWFGKAEDCLVLKDKELLERFIDRDEMIDKR 234

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BLAST of Lsi04G005140 vs. TrEMBL
Match: A0A0D2NF03_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G185800 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 2.2e-66
Identity = 136/212 (64.15%), Postives = 159/212 (75.00%), Query Frame = 1 

Query: 31  TSSSSSPFRCVFFSKFSSPSESSSGIDCSTAAPADIADVPEEVDEDFVDAVSPAAAAANS 90
           T+  S PF       FS PS SS+          D+AD+  E D  + D          S
Sbjct: 31  TAKPSPPFSLKHLLLFSLPSLSSASEKILAGTATDVADISGESDLVYSDPPV-------S 90

Query: 91  SAVEPVFPTLLQPRVVVYDGVCHLCHRGVKWVIKVDKYKKIKFCCLQSKAAEPYLRVSGL 150
           + ++P+ P LLQPRVV+YDGVCHLCHRGVK VIK DK++KIKFCC+QSKAAEPYLRV G+
Sbjct: 91  ATIKPLLPDLLQPRVVIYDGVCHLCHRGVKSVIKADKHRKIKFCCVQSKAAEPYLRVCGV 150

Query: 151 DREDVCRRFVFIEGHGSYHQASTAALRVLSYLPLPYSALSAFLIIPTPLRDGIYDTVARH 210
           DREDV RRFVFIEG G YHQ STAALRVLSYLPLPYSALSAFLIIPTPLRD +YD +A+ 
Sbjct: 151 DREDVLRRFVFIEGLGLYHQGSTAALRVLSYLPLPYSALSAFLIIPTPLRDAVYDFIAKR 210

Query: 211 RYDMFGKAEDCLVLQEEELLERFIDRQELLNQ 243
           RYD FGK+EDCLVLQE ELLERFIDR+E++++
Sbjct: 211 RYDWFGKSEDCLVLQESELLERFIDREEMMDR 235

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BLAST of Lsi04G005140 vs. TrEMBL
Match: M5Y6J8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022484mg PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 2.9e-66
Identity = 129/177 (72.88%), Postives = 148/177 (83.62%), Query Frame = 1 

Query: 64  ADIADVPEEVDEDFVDAVSPAAAAANSSAVEPVFPTLLQPRVVVYDGVCHLCHRGVKWVI 123
           AD  D+ +E +ED V   S   A    SAV+PV PTLLQPRVVVYDGVCHLCH GVKWVI
Sbjct: 341 ADAVDLGDEEEEDDVPIYSNPTA---DSAVKPVIPTLLQPRVVVYDGVCHLCHGGVKWVI 400

Query: 124 KVDKYKKIKFCCLQSKAAEPYLRVSGLDREDVCRRFVFIEGHGSYHQASTAALRVLSYLP 183
           K DKY+KIKFCCLQS  AEPYLR+ GLDREDV RRF+F+EG G YHQ STAAL+VLSYLP
Sbjct: 401 KADKYRKIKFCCLQSVTAEPYLRLCGLDREDVLRRFLFVEGPGLYHQGSTAALKVLSYLP 460

Query: 184 LPYSALSAFLIIPTPLRDGIYDTVARHRYDMFGKAEDCLVLQEEELLERFIDRQELL 241
           LPYSALSAF +IPTPLR+ +YD VA+ RYD+FGK+EDCLVLQE+ELLERFIDR+E++
Sbjct: 461 LPYSALSAFRVIPTPLREIVYDYVAKRRYDIFGKSEDCLVLQEKELLERFIDREEIM 514

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BLAST of Lsi04G005140 vs. TrEMBL
Match: A0A0B0MPR5_GOSAR (Putative yuxK OS=Gossypium arboreum GN=F383_25914 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 2.1e-64
Identity = 135/212 (63.68%), Postives = 160/212 (75.47%), Query Frame = 1 

Query: 31  TSSSSSPFRCVFFSKFSSPSESSSGIDCSTAAPADIADVPEEVDEDFVDAVSPAAAAANS 90
           T+  S PF   +   FS  S +S  I   TA   D+A +  + D  + D          S
Sbjct: 85  TAKPSPPFSLKYLLLFSL-SSASEKILAGTAT--DVAVISGKSDLVYSDPPV-------S 144

Query: 91  SAVEPVFPTLLQPRVVVYDGVCHLCHRGVKWVIKVDKYKKIKFCCLQSKAAEPYLRVSGL 150
           + ++P+ P LLQPRVV+YDGVCHLCH GVKWVIK DK++KIKFCC+QSKAAEPYLRV G+
Sbjct: 145 ATIKPLLPDLLQPRVVIYDGVCHLCHEGVKWVIKADKHRKIKFCCVQSKAAEPYLRVCGV 204

Query: 151 DREDVCRRFVFIEGHGSYHQASTAALRVLSYLPLPYSALSAFLIIPTPLRDGIYDTVARH 210
           DREDV RRFVFIEG G YHQ STAALRVLSYLPLPYSALSAFLIIPTPLRD +YD +A+ 
Sbjct: 205 DREDVLRRFVFIEGLGLYHQGSTAALRVLSYLPLPYSALSAFLIIPTPLRDAVYDFIAKR 264

Query: 211 RYDMFGKAEDCLVLQEEELLERFIDRQELLNQ 243
           RYD FGK+EDCLVLQE ELLERFIDR+E++++
Sbjct: 265 RYDWFGKSEDCLVLQESELLERFIDREEMMDR 286

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BLAST of Lsi04G005140 vs. TAIR10
Match: AT1G24095.1 (AT1G24095.1 Putative thiol-disulphide oxidoreductase DCC)

HSP 1 Score: 245.7 bits (626), Expect = 2.9e-65
Identity = 132/204 (64.71%), Postives = 153/204 (75.00%), Query Frame = 1 

Query: 39  RCVFFSKFSSPSESSSGIDCSTAAPADIADVPEEVDEDFVDAVSPAAAAANSSAVEPVFP 98
           R V FS   SP+ S+  I  +TA          E+D D V A    A +     V  + P
Sbjct: 22  RSVCFSA-PSPAFSTGAISRTTA----------EIDADEVTACLDPAESVTKIPV--IMP 81

Query: 99  TLLQPRVVVYDGVCHLCHRGVKWVIKVDKYKKIKFCCLQSKAAEPYLRVSGLDREDVCRR 158
             LQPRVVVYDGVCHLCH GVKW+IK DKY+KIKFCCLQSKAAEPYL VSG+ REDV +R
Sbjct: 82  GNLQPRVVVYDGVCHLCHGGVKWIIKADKYRKIKFCCLQSKAAEPYLEVSGVTREDVQKR 141

Query: 159 FVFIEGHGSYHQASTAALRVLSYLPLPYSALSAFLIIPTPLRDGIYDTVARHRYDMFGKA 218
           F+FIEG G YHQASTAALRV+SYLPLPYSAL+AF I+PTPLRD +YD VA++RYD FGKA
Sbjct: 142 FLFIEGLGFYHQASTAALRVVSYLPLPYSALNAFSIVPTPLRDSVYDYVAKNRYDWFGKA 201

Query: 219 EDCLVLQEEELLERFIDRQELLNQ 243
           EDCLVL ++ELLERFIDR EL+N+
Sbjct: 202 EDCLVLNDKELLERFIDRDELINR 212

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BLAST of Lsi04G005140 vs. TAIR10
Match: AT1G52590.1 (AT1G52590.1 Putative thiol-disulphide oxidoreductase DCC)

HSP 1 Score: 85.9 bits (211), Expect = 3.8e-17
Identity = 46/118 (38.98%), Postives = 75/118 (63.56%), Query Frame = 1 

Query: 105 VVVYDGVCHLCHRGVKWVIKVDKYKKIKFCCLQSKAAEPYLRVSGLDREDVCRRFVFIEG 164
           ++++DGVC+LC+ GVK+V   D+ + I+F  LQS+A +  L  SG   +D+    V +E 
Sbjct: 55  IMLFDGVCNLCNGGVKFVRDHDRNRSIRFEALQSEAGKKLLLRSGRAPDDI-SSVVLVEN 114

Query: 165 HGSYHQASTAALRVLSYLPLPYSALSAFL-IIPTPLRDGIYDTVARHRYDMFGKAEDC 222
             SY + S A L+++ Y+ LP+  L+ FL   P  +RD +Y+ VA +RY MFG+++ C
Sbjct: 115 DRSYIK-SEAVLKIMKYIDLPFPQLAFFLQFAPLFVRDFLYENVANNRYAMFGRSDSC 170

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BLAST of Lsi04G005140 vs. NCBI nr
Match: gi|449434879|ref|XP_004135223.1| (PREDICTED: uncharacterized protein LOC101209995 [Cucumis sativus])

HSP 1 Score: 382.9 bits (982), Expect = 4.3e-103
Identity = 207/245 (84.49%), Postives = 216/245 (88.16%), Query Frame = 1 

Query: 1   MTSKLLTNRLRHLLFTSTSTATTRPTSFTITSSSSSPFRCVFFSKFSSPSESSSGIDCST 60
           M SKLL+NR R L+ TST  AT RPTSFT TS S S FR VF SKFSSP  SS GIDCST
Sbjct: 1   MASKLLSNRFRQLVLTST--ATIRPTSFT-TSFSFSSFRRVFSSKFSSPLSSSFGIDCST 60

Query: 61  AAPADIADVPEEVDEDFVDAVSPAAAAANSSAVEPVFPTLLQPRVVVYDGVCHLCHRGVK 120
           AAPADIADVPEEV +D+VD VSPA A  NS A EPVFPTLLQPRVV+YDGVCHLCHRGVK
Sbjct: 61  AAPADIADVPEEVVKDYVDVVSPAVAV-NSLAAEPVFPTLLQPRVVIYDGVCHLCHRGVK 120

Query: 121 WVIKVDKYKKIKFCCLQSKAAEPYLRVSGLDREDVCRRFVFIEGHGSYHQASTAALRVLS 180
           WVIKVDKYKKIKFCCLQSK AEPYLR+SGLDREDV  RFVFIEGHGSYHQASTAALRVLS
Sbjct: 121 WVIKVDKYKKIKFCCLQSKTAEPYLRLSGLDREDVSHRFVFIEGHGSYHQASTAALRVLS 180

Query: 181 YLPLPYSALSAFLIIPTPLRDGIYDTVARHRYDMFGKAEDCLVLQEEELLERFIDRQELL 240
           YLPLPYSALSAFLIIPTPLRD IYDTVARHRYDMF KAE CLVLQ+EELLERFIDR+ELL
Sbjct: 181 YLPLPYSALSAFLIIPTPLRDSIYDTVARHRYDMFVKAEGCLVLQDEELLERFIDREELL 240

Query: 241 NQRHR 246
           NQRH+
Sbjct: 241 NQRHQ 241

[Close]
BLAST of Lsi04G005140 vs. NCBI nr
Match: gi|659090878|ref|XP_008446251.1| (PREDICTED: uncharacterized protein LOC103489038 [Cucumis melo])

HSP 1 Score: 380.2 bits (975), Expect = 2.8e-102
Identity = 205/244 (84.02%), Postives = 214/244 (87.70%), Query Frame = 1 

Query: 1   MTSKLLTNRLRHLLFTSTSTATTRPTSFTITSSSSSPFRCVFFSKFSSPSESSSGIDCST 60
           M +KLLTN  RHL+FTST  AT RPTSFT TSSS S FR VF SKFSSP  SSSGIDCST
Sbjct: 1   MATKLLTNGFRHLVFTST--ATIRPTSFT-TSSSLSSFRRVFLSKFSSPLPSSSGIDCST 60

Query: 61  AAPADIADVPEEVDEDFVDAVSPAAAAANSSAVEPVFPTLLQPRVVVYDGVCHLCHRGVK 120
           AAPA+I DVPEEV  D+VDAVSPA A  NSSA +PVFPTLLQPRVV+YDGVCHLCHRGVK
Sbjct: 61  AAPANIGDVPEEVVGDYVDAVSPAVAV-NSSAAQPVFPTLLQPRVVIYDGVCHLCHRGVK 120

Query: 121 WVIKVDKYKKIKFCCLQSKAAEPYLRVSGLDREDVCRRFVFIEGHGSYHQASTAALRVLS 180
           WVIKVDKYKKIKFCCLQSK AEPYLR+SGLDRE V  RFVFIEGHGSYHQ STAALRVLS
Sbjct: 121 WVIKVDKYKKIKFCCLQSKTAEPYLRLSGLDREHVSHRFVFIEGHGSYHQGSTAALRVLS 180

Query: 181 YLPLPYSALSAFLIIPTPLRDGIYDTVARHRYDMFGKAEDCLVLQEEELLERFIDRQELL 240
           YLPLPYSALSAFLIIP PLRD IYDTVARHRYDMF KAE CLVL +EELLERFIDR+ELL
Sbjct: 181 YLPLPYSALSAFLIIPAPLRDSIYDTVARHRYDMFVKAEGCLVLLDEELLERFIDREELL 240

Query: 241 NQRH 245
           NQRH
Sbjct: 241 NQRH 240

[Close]
BLAST of Lsi04G005140 vs. NCBI nr
Match: gi|645281082|ref|XP_008245467.1| (PREDICTED: DCC family protein At1g52590, chloroplastic [Prunus mume])

HSP 1 Score: 276.2 bits (705), Expect = 5.6e-71
Identity = 148/219 (67.58%), Postives = 173/219 (79.00%), Query Frame = 1 

Query: 22  TTRPTSFTITSSSSSPFRCVFFSKFSSPSESSSGIDCSTAAPADIADVPEEVDEDFVDAV 81
           TTRP+     SSSS P +C F S  SS S SSS +  STAA  D  D+ +E D D     
Sbjct: 14  TTRPS----LSSSSFPLKCSFSSTSSSSSLSSSDVVSSTAA--DAVDLGDEEDNDVPIYS 73

Query: 82  SPAAAAANSSAVEPVFPTLLQPRVVVYDGVCHLCHRGVKWVIKVDKYKKIKFCCLQSKAA 141
           +P A     SAV+P+ PTLLQPRVVVYDGVCHLCH GVKWVIK DKY+KIKFCCLQS+ A
Sbjct: 74  NPTAP----SAVKPMIPTLLQPRVVVYDGVCHLCHGGVKWVIKADKYRKIKFCCLQSETA 133

Query: 142 EPYLRVSGLDREDVCRRFVFIEGHGSYHQASTAALRVLSYLPLPYSALSAFLIIPTPLRD 201
           EPYLR+ GLDREDV RRF+F+EG G YHQ STAAL+VLSYLPLPYSALSAF++IPTPLR+
Sbjct: 134 EPYLRLCGLDREDVLRRFLFVEGPGLYHQGSTAALKVLSYLPLPYSALSAFMVIPTPLRE 193

Query: 202 GIYDTVARHRYDMFGKAEDCLVLQEEELLERFIDRQELL 241
            +YD VA+ RYD+FGK+EDCLVLQE+ELLERFIDR+E++
Sbjct: 194 IVYDYVAKRRYDIFGKSEDCLVLQEKELLERFIDREEIM 222

[Close]
BLAST of Lsi04G005140 vs. NCBI nr
Match: gi|802787902|ref|XP_012092041.1| (PREDICTED: uncharacterized protein LOC105649843 [Jatropha curcas])

HSP 1 Score: 267.7 bits (683), Expect = 2.0e-68
Identity = 152/233 (65.24%), Postives = 175/233 (75.11%), Query Frame = 1 

Query: 18  TSTATTRPTSFTITSSSSSP---FRCVFFSKFSS---PSESSSGIDCSTAAPADIADVPE 77
           T+T+T R   F  +SSS S     +C  FS FSS   P  S + I   TAA   +ADV  
Sbjct: 10  TATSTPRNAQFFSSSSSFSSSCLLKCSLFSSFSSSSFPFPSPTDIVSDTAAA--VADVVP 69

Query: 78  EVDEDFVDAVSPAAAAANSSAVEPVF-PTLLQPRVVVYDGVCHLCHRGVKWVIKVDKYKK 137
           E ++     VS       SS V+PV  PTLLQPRVVVYDGVCHLCHRGVKWVIK DKY+K
Sbjct: 70  EAEDLLYPDVSI------SSTVKPVTAPTLLQPRVVVYDGVCHLCHRGVKWVIKADKYRK 129

Query: 138 IKFCCLQSKAAEPYLRVSGLDREDVCRRFVFIEGHGSYHQASTAALRVLSYLPLPYSALS 197
           IKFCCLQSKAAEPYLR+ GLDREDV RRF+FIEG G YHQASTAALRVL+YLPLPYSALS
Sbjct: 130 IKFCCLQSKAAEPYLRLCGLDREDVLRRFLFIEGLGQYHQASTAALRVLAYLPLPYSALS 189

Query: 198 AFLIIPTPLRDGIYDTVARHRYDMFGKAEDCLVLQEEELLERFIDRQELLNQR 244
             LI+PTPLRD +YD +AR RYD FGKAEDCLVL+++ELLERFIDR E++++R
Sbjct: 190 TLLIVPTPLRDAVYDHIARRRYDWFGKAEDCLVLKDKELLERFIDRDEMIDKR 234

[Close]
BLAST of Lsi04G005140 vs. NCBI nr
Match: gi|823159225|ref|XP_012479444.1| (PREDICTED: uncharacterized protein LOC105794696 [Gossypium raimondii])

HSP 1 Score: 260.4 bits (664), Expect = 3.2e-66
Identity = 136/212 (64.15%), Postives = 159/212 (75.00%), Query Frame = 1 

Query: 31  TSSSSSPFRCVFFSKFSSPSESSSGIDCSTAAPADIADVPEEVDEDFVDAVSPAAAAANS 90
           T+  S PF       FS PS SS+          D+AD+  E D  + D          S
Sbjct: 31  TAKPSPPFSLKHLLLFSLPSLSSASEKILAGTATDVADISGESDLVYSDPPV-------S 90

Query: 91  SAVEPVFPTLLQPRVVVYDGVCHLCHRGVKWVIKVDKYKKIKFCCLQSKAAEPYLRVSGL 150
           + ++P+ P LLQPRVV+YDGVCHLCHRGVK VIK DK++KIKFCC+QSKAAEPYLRV G+
Sbjct: 91  ATIKPLLPDLLQPRVVIYDGVCHLCHRGVKSVIKADKHRKIKFCCVQSKAAEPYLRVCGV 150

Query: 151 DREDVCRRFVFIEGHGSYHQASTAALRVLSYLPLPYSALSAFLIIPTPLRDGIYDTVARH 210
           DREDV RRFVFIEG G YHQ STAALRVLSYLPLPYSALSAFLIIPTPLRD +YD +A+ 
Sbjct: 151 DREDVLRRFVFIEGLGLYHQGSTAALRVLSYLPLPYSALSAFLIIPTPLRDAVYDFIAKR 210

Query: 211 RYDMFGKAEDCLVLQEEELLERFIDRQELLNQ 243
           RYD FGK+EDCLVLQE ELLERFIDR+E++++
Sbjct: 211 RYDWFGKSEDCLVLQESELLERFIDREEMMDR 235

The following BLAST results are available for this feature:
BLAST of Lsi04G005140 vs. Swiss-Prot
Match NameE-valueIdentityDescription
YUXK_BACSU7.2e-1839.85Uncharacterized protein YuxK OS=Bacillus subtilis (strain 168) GN=yuxK PE=3 SV=1[more]
Y1259_ARATH6.8e-1638.98DCC family protein At1g52590, chloroplastic OS=Arabidopsis thaliana GN=At1g52590... [more]
BLAST of Lsi04G005140 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KVQ2_CUCSA3.0e-10384.49Uncharacterized protein OS=Cucumis sativus GN=Csa_5G603330 PE=4 SV=1[more]
A0A067JEX1_JATCU1.4e-6865.24Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21774 PE=4 SV=1[more]
A0A0D2NF03_GOSRA2.2e-6664.15Uncharacterized protein OS=Gossypium raimondii GN=B456_005G185800 PE=4 SV=1[more]
M5Y6J8_PRUPE2.9e-6672.88Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022484mg PE=4 SV=1[more]
A0A0B0MPR5_GOSAR2.1e-6463.68Putative yuxK OS=Gossypium arboreum GN=F383_25914 PE=4 SV=1[more]
BLAST of Lsi04G005140 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G24095.12.9e-6564.71 Putative thiol-disulphide oxidoreductase DCC[more]
AT1G52590.13.8e-1738.98 Putative thiol-disulphide oxidoreductase DCC[more]
BLAST of Lsi04G005140 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449434879|ref|XP_004135223.1|4.3e-10384.49PREDICTED: uncharacterized protein LOC101209995 [Cucumis sativus][more]
gi|659090878|ref|XP_008446251.1|2.8e-10284.02PREDICTED: uncharacterized protein LOC103489038 [Cucumis melo][more]
gi|645281082|ref|XP_008245467.1|5.6e-7167.58PREDICTED: DCC family protein At1g52590, chloroplastic [Prunus mume][more]
gi|802787902|ref|XP_012092041.1|2.0e-6865.24PREDICTED: uncharacterized protein LOC105649843 [Jatropha curcas][more]
gi|823159225|ref|XP_012479444.1|3.2e-6664.15PREDICTED: uncharacterized protein LOC105794696 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007263DUF393
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0051252 regulation of RNA metabolic process
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G005140.1Lsi04G005140.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007263Protein of unknown function DUF393PFAMPF04134DUF393coord: 106..217
score: 1.7
NoneNo IPR availablePANTHERPTHR33639FAMILY NOT NAMEDcoord: 59..243
score: 1.8
NoneNo IPR availablePANTHERPTHR33639:SF1THIOL-DISULFIDE OXIDOREDUCTASE DCC-RELATEDcoord: 59..243
score: 1.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi04G005140Csa5G603330Cucumber (Chinese Long) v2culsiB368
Lsi04G005140CSPI05G22980Wild cucumber (PI 183967)cpilsiB372
Lsi04G005140CmaCh04G015930Cucurbita maxima (Rimu)cmalsiB678
Lsi04G005140CmoCh04G016660Cucurbita moschata (Rifu)cmolsiB671
Lsi04G005140Cla010114Watermelon (97103) v1lsiwmB312
Lsi04G005140MELO3C012024Melon (DHL92) v3.5.1lsimeB281
Lsi04G005140ClCG05G025030Watermelon (Charleston Gray)lsiwcgB283
Lsi04G005140MELO3C012024.2Melon (DHL92) v3.6.1lsimedB297
Lsi04G005140Cla97C05G107150Watermelon (97103) v2lsiwmbB284
Lsi04G005140Bhi07G001373Wax gourdlsiwgoB392
Lsi04G005140Cp4.1LG01g13040Cucurbita pepo (Zucchini)cpelsiB360
Lsi04G005140CsGy5G022450Cucumber (Gy14) v2cgyblsiB337
Lsi04G005140Carg01761Silver-seed gourdcarlsiB764
Lsi04G005140CsaV3_5G031860Cucumber (Chinese Long) v3cuclsiB393
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi04G005140Bottle gourd (USVL1VR-Ls)lsilsiB097
Lsi04G005140Bottle gourd (USVL1VR-Ls)lsilsiB139
Lsi04G005140Cucumber (Gy14) v1cgylsiB119
Lsi04G005140Cucumber (Gy14) v1cgylsiB465
Lsi04G005140Cucurbita maxima (Rimu)cmalsiB381
Lsi04G005140Cucurbita maxima (Rimu)cmalsiB681
Lsi04G005140Cucurbita moschata (Rifu)cmolsiB674
Lsi04G005140Cucurbita pepo (Zucchini)cpelsiB363
Lsi04G005140Wild cucumber (PI 183967)cpilsiB050
Lsi04G005140Cucumber (Chinese Long) v2culsiB051
Lsi04G005140Melon (DHL92) v3.5.1lsimeB289
Lsi04G005140Watermelon (Charleston Gray)lsiwcgB274
Lsi04G005140Watermelon (97103) v1lsiwmB323
Lsi04G005140Cucumber (Gy14) v2cgyblsiB052
Lsi04G005140Melon (DHL92) v3.6.1lsimedB303
Lsi04G005140Melon (DHL92) v3.6.1lsimedB308
Lsi04G005140Silver-seed gourdcarlsiB344
Lsi04G005140Cucumber (Chinese Long) v3cuclsiB064
Lsi04G005140Cucumber (Chinese Long) v3cuclsiB057
Lsi04G005140Watermelon (97103) v2lsiwmbB261
Lsi04G005140Wax gourdlsiwgoB380