Lsi04G000220 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi04G000220
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Transcription factor
Location	chr04 : 326814 .. 329563 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATGAAACCCAGTCCCTCATCCCCACCAACCTCACAAACCTCCCCTTCTCTTCTAATTAACCACCACCTTCAGCTTCACCTTCCCGACGACAAAAAAAACCCTGTTTCCACCGGTGACCGCCTAAAACGAGATGAATGGAGCGAAGGAGCGGTTTCCACCCTCCTACAAGCCTACGAATCAAAATGGGTTCTACGAAACAGAGCCAAATTGAAAGGCCATGATTGGGAAGATGTGGCCCGCCATGTCTCTTCAAGAGCTAATTTTACCAAATCTCCCAAAACTCAAACTCAGTGTAAGAATAAAATTGAGTCCATGAAAAAAAGGTACCGTTCTGAATCTGCCTCCGCCGCCTCTTCCTGGCCTTTGTACCACCGTCTTCATCTCTTGCTCAGGGGAAACACTACGCTCACTCCACCCCCACCCCCACCCCCACCACCACCGCCGCCGCCGCCCCCATCCTCTCACTCTCCACCACCGCCACTTATTCTCGTCGATCCTCCACCTCCCTCTTCACCGCCGTTTCTTCCGCCCCAAAATTCCCATGGATCCAATGGTGTTGATAGGATTAATCCTAAGGTATCAACTTCTTCCTTTAATTCCCCCCTTTCTTTTTTTTTTTTCTAATTTATTATGGATCCAACACTTTCATCGGAATTAGCTTTTGTCCCTTTTAATTTTTTTTCTTTTTTCTTTTCTAAATGTATTTTCCCTTTATTGGTTTTATTTATAAATTCCACAGTGCCATATGTATATATATATGATTTTTGCAGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAATAATAATAATAATAATAATAATAAAAACTGGGTCATGTGTGTCTTTTTGGTTTATTATTTTACACAGTTTGGATTTTGGGAGATGGAGAGATAA

mRNA sequence

ATGGAGATGAAACCCAGTCCCTCATCCCCACCAACCTCACAAACCTCCCCTTCTCTTCTAATTAACCACCACCTTCAGCTTCACCTTCCCGACGACAAAAAAAACCCTGTTTCCACCGGTGACCGCCTAAAACGAGATGAATGGAGCGAAGGAGCGGTTTCCACCCTCCTACAAGCCTACGAATCAAAATGGGTTCTACGAAACAGAGCCAAATTGAAAGGCCATGATTGGGAAGATGTGGCCCGCCATGTCTCTTCAAGAGCTAATTTTACCAAATCTCCCAAAACTCAAACTCAGTGTAAGAATAAAATTGAGTCCATGAAAAAAAGGTACCGTTCTGAATCTGCCTCCGCCGCCTCTTCCTGGCCTTTGTACCACCGTCTTCATCTCTTGCTCAGGGGAAACACTACGCTCACTCCACCCCCACCCCCACCCCCACCACCACCGCCGCCGCCGCCCCCATCCTCTCACTCTCCACCACCGCCACTTATTCTCGTCGATCCTCCACCTCCCTCTTCACCGCCGTTTCTTCCGCCCCAAAATTCCCATGGATCCAATGGTGTTGATAGGATTAATCCTAAGTTTGGATTTTGGGAGATGGAGAGATAA

Coding sequence (CDS)

ATGGAGATGAAACCCAGTCCCTCATCCCCACCAACCTCACAAACCTCCCCTTCTCTTCTAATTAACCACCACCTTCAGCTTCACCTTCCCGACGACAAAAAAAACCCTGTTTCCACCGGTGACCGCCTAAAACGAGATGAATGGAGCGAAGGAGCGGTTTCCACCCTCCTACAAGCCTACGAATCAAAATGGGTTCTACGAAACAGAGCCAAATTGAAAGGCCATGATTGGGAAGATGTGGCCCGCCATGTCTCTTCAAGAGCTAATTTTACCAAATCTCCCAAAACTCAAACTCAGTGTAAGAATAAAATTGAGTCCATGAAAAAAAGGTACCGTTCTGAATCTGCCTCCGCCGCCTCTTCCTGGCCTTTGTACCACCGTCTTCATCTCTTGCTCAGGGGAAACACTACGCTCACTCCACCCCCACCCCCACCCCCACCACCACCGCCGCCGCCGCCCCCATCCTCTCACTCTCCACCACCGCCACTTATTCTCGTCGATCCTCCACCTCCCTCTTCACCGCCGTTTCTTCCGCCCCAAAATTCCCATGGATCCAATGGTGTTGATAGGATTAATCCTAAGTTTGGATTTTGGGAGATGGAGAGATAA

Protein sequence

MEMKPSPSSPPTSQTSPSLLINHHLQLHLPDDKKNPVSTGDRLKRDEWSEGAVSTLLQAYESKWVLRNRAKLKGHDWEDVARHVSSRANFTKSPKTQTQCKNKIESMKKRYRSESASAASSWPLYHRLHLLLRGNTTLTPPPPPPPPPPPPPPPSSHSPPPPLILVDPPPPSSPPFLPPQNSHGSNGVDRINPKFGFWEMER

Homology

[Close]

BLAST of Lsi04G000220 vs. Swiss-Prot
Match: ASIL2_ARATH (Trihelix transcription factor ASIL2 OS=Arabidopsis thaliana GN=ASIL2 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.9e-11
Identity = 48/141 (34.04%), Postives = 73/141 (51.77%), Query Frame = 1


Query: 9   SPP--TSQTSPSLLINHHLQLHLPDDKKNPVS--TGDRLKRDEWSEGAVSTLLQAYESKW 68
           +PP  +SQ  P  L    L +       N     TG   + D WSE A + L+ A+  ++
Sbjct: 41  TPPGNSSQKDPDALALALLPIQASGGGNNSSGRPTGGGGREDCWSEAATAVLIDAWGERY 100

Query: 69  VLRNRAKLKGHDWEDVARHVSSRANFTKSPKTQTQCKNKIESMKKRYRSESASAA----- 128
           +  +R  LK   W++VA  VSSR ++ K PKT  QCKN+I+++KK+Y+ E    A     
Sbjct: 101 LELSRGNLKQKHWKEVAEIVSSREDYGKIPKTDIQCKNRIDTVKKKYKQEKVRIANGGGR 160

Query: 129 SSWPLYHRLHLLLRGNTTLTP 141
           S W  + +L  L+ G+T   P
Sbjct: 161 SRWVFFDKLDRLI-GSTAKIP 180

[Close]

BLAST of Lsi04G000220 vs. TrEMBL
Match: A0A0A0KRQ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623880 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 9.8e-52
Identity = 128/209 (61.24%), Postives = 135/209 (64.59%), Query Frame = 1


Query: 1   MEMKPSPSSPPTS--------QTSPSLLINHHLQLHLPDD----KKNPVSTGD----RLK 60
           ME+KP+PSSPPT         QTSPSLL NHH QL  PDD    K NPVS G     RLK
Sbjct: 1   MEIKPTPSSPPTITSLTQTQIQTSPSLLFNHHHQL--PDDNPSPKTNPVSNGGGRGRRLK 60

Query: 61  RDEWSEGAVSTLLQAYESKWVLRNRAKLKGHDWEDVARHVSSRANFTKSPKTQTQCKNKI 120
           RDEWSEGAVS L+ AYESKW LRNRAKLKGHDWEDVARHVSSR+N TKS KT TQCKNKI
Sbjct: 61  RDEWSEGAVSILIDAYESKWKLRNRAKLKGHDWEDVARHVSSRSNLTKSSKTHTQCKNKI 120

Query: 121 ESMKKRYRSESASAASSWPLYHRLHLLLRGNTTLTPPPPPPPPPPPPPPPSSHSPPPPLI 180
           ESMKK+ R E A   SSWPLYHR+  L+ GNT LTP PPP                    
Sbjct: 121 ESMKKKCRQEPAD--SSWPLYHRILPLVGGNTNLTPSPPPS------------------- 174

Query: 181 LVDPPPPSSPPFLPPQNSHGSNGVDRINP 194
                       LPPQNSHGSNGVD INP
Sbjct: 181 ------------LPPQNSHGSNGVDNINP 174

[Close]

BLAST of Lsi04G000220 vs. TrEMBL
Match: M5X048_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007968mg PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 3.3e-47
Identity = 131/216 (60.65%), Postives = 148/216 (68.52%), Query Frame = 1


Query: 6   SPSSPPTSQTSPSLLINHHLQLHLPDDK-KNPVSTG---DRLKRDEWSEGAVSTLLQAYE 65
           +PS PP + TS +       +L  P  K + P+  G   DRLKRDEWSEGAVS+LL+AYE
Sbjct: 9   NPSLPPNNYTSTTK------ELESPRSKPQQPLGVGGSSDRLKRDEWSEGAVSSLLEAYE 68

Query: 66  SKWVLRNRAKLKGHDWEDVARHVSSRANFTKSPKTQTQCKNKIESMKKRYRSESASA-AS 125
           +KWVLRNRAKLKGHDWEDVARHVSSRAN TKSPKTQTQCKNKIESMKKRYRSESA+A  S
Sbjct: 69  TKWVLRNRAKLKGHDWEDVARHVSSRANCTKSPKTQTQCKNKIESMKKRYRSESATADGS 128

Query: 126 SWPLYHRLHLLLRGN-------------TTLTPPPPPPPPP-----PPPPPPSSHSPPPP 185
           SWPLY RL LLLRG+             T    PPPPPPPP     PPPPP ++H    P
Sbjct: 129 SWPLYPRLDLLLRGSGPSPTAASAAATVTAAAIPPPPPPPPLPVQLPPPPPQNNH----P 188

Query: 186 LILVDPP---PPSSPPFLPP------QNSHGSNGVD 190
           L+L++P    PP  PP  PP      QNS+GSNGVD
Sbjct: 189 LMLLEPSVSLPPQPPPTAPPQPIGTAQNSYGSNGVD 214

[Close]

BLAST of Lsi04G000220 vs. TrEMBL
Match: A0A0B0MA23_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_13519 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 2.1e-46
Identity = 129/215 (60.00%), Postives = 150/215 (69.77%), Query Frame = 1


Query: 12  TSQTSPSLLINHHLQLHLPDD--KKNPVST-----GDRLKRDEWSEGAVSTLLQAYESKW 71
           T+Q +PSLL N+++ +   D   KK+P +T     GDRLKRDEWSEGAVS+LL+AYE+KW
Sbjct: 5   TNQENPSLLSNNNISITKEDSSPKKHPGNTAAAGGGDRLKRDEWSEGAVSSLLEAYENKW 64

Query: 72  VLRNRAKLKGHDWEDVARHVSSRANFTKSPKTQTQCKNKIESMKKRYRSESASA-ASSWP 131
           VLRNRAKLKGHDWEDVAR+VS+RAN TKSPKTQTQCKNKIESMKKRYRSESA+A  SSWP
Sbjct: 65  VLRNRAKLKGHDWEDVARYVSARANCTKSPKTQTQCKNKIESMKKRYRSESATADGSSWP 124

Query: 132 LYHRLHLLLRGNTTLTPPPPPPPPPPPPPPPSSHSP----PPPLILVDP----------- 191
           LY RL LLLRG+T   PPP  PP   P   P + +P    PP + L +P           
Sbjct: 125 LYPRLDLLLRGSTAPPPPPLLPPQLQPSAVPQAATPISTNPPLMTLPEPSMMVVLQQQQQ 184

Query: 192 -PPPSSPPFLPP------QNSHGSNGVDRINPKFG 197
            PPP  PP L P      QNSHGSNG+DRI  + G
Sbjct: 185 HPPPPPPPHLAPQLPGTTQNSHGSNGIDRIPKEDG 219

[Close]

BLAST of Lsi04G000220 vs. TrEMBL
Match: A0A0D2V0H7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G018400 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 6.1e-46
Identity = 132/214 (61.68%), Postives = 151/214 (70.56%), Query Frame = 1


Query: 12  TSQTSPSLLINHHLQLHLPDD--KKNPVST-----GDRLKRDEWSEGAVSTLLQAYESKW 71
           T+Q +PSLL N+++ +   D   KK+P +T     GDRLKRDEWSEGAVS+LL+AYE+KW
Sbjct: 5   TNQENPSLLSNNNISITKEDSSPKKHPGNTAAAGGGDRLKRDEWSEGAVSSLLEAYENKW 64

Query: 72  VLRNRAKLKGHDWEDVARHVSSRANFTKSPKTQTQCKNKIESMKKRYRSESASA-ASSWP 131
           VLRNRAKLKGHDWEDVAR+VS+RAN TKSPKTQTQCKNKIESMKKRYRSESA+A  SSWP
Sbjct: 65  VLRNRAKLKGHDWEDVARYVSARANCTKSPKTQTQCKNKIESMKKRYRSESATADGSSWP 124

Query: 132 LYHRLHLLLRGNTTLTPPPPPPPPPPPPP-------------PPSSHSPPPPLILV---- 191
           LY RL LLLRG+T   PPPPP  PP   P             PP    P P +++V    
Sbjct: 125 LYPRLDLLLRGST--APPPPPLLPPQLQPSAVPQAATPISTNPPLMTLPEPSMMVVLQQQ 184

Query: 192 --DPPPPSSPPFLP--PQNSHGSNGVDRINPKFG 197
              PPPP   P LP   QNSHGSNG+DRI PK G
Sbjct: 185 HPPPPPPHLAPQLPGTTQNSHGSNGIDRI-PKDG 215

[Close]

BLAST of Lsi04G000220 vs. TrEMBL
Match: A0A0D2VUE2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G018400 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.0e-45
Identity = 130/214 (60.75%), Postives = 150/214 (70.09%), Query Frame = 1


Query: 12  TSQTSPSLLINHHLQLHLPDD--KKNPVST-----GDRLKRDEWSEGAVSTLLQAYESKW 71
           T+Q +PSLL N+++ +   D   KK+P +T     GDRLKRDEWSEGAVS+LL+AYE+KW
Sbjct: 5   TNQENPSLLSNNNISITKEDSSPKKHPGNTAAAGGGDRLKRDEWSEGAVSSLLEAYENKW 64

Query: 72  VLRNRAKLKGHDWEDVARHVSSRANFTKSPKTQTQCKNKIESMKKRYRSESASA-ASSWP 131
           VLRNRAKLKGHDWEDVAR+VS+RAN TKSPKTQTQCKNKIESMKKRYRSESA+A  SSWP
Sbjct: 65  VLRNRAKLKGHDWEDVARYVSARANCTKSPKTQTQCKNKIESMKKRYRSESATADGSSWP 124

Query: 132 LYHRLHLLLRGNTTLTPPPPPPPPPPPPP-------------PPSSHSPPPPLILV---- 191
           LY RL LLLRG+T   PPPPP  PP   P             PP    P P +++V    
Sbjct: 125 LYPRLDLLLRGST--APPPPPLLPPQLQPSAVPQAATPISTNPPLMTLPEPSMMVVLQQQ 184

Query: 192 --DPPPPSSPPFLP--PQNSHGSNGVDRINPKFG 197
              PPPP   P LP   QNSHGSNG+DRI  + G
Sbjct: 185 HPPPPPPHLAPQLPGTTQNSHGSNGIDRIPKEDG 216

[Close]

BLAST of Lsi04G000220 vs. TAIR10
Match: AT3G54390.1 (AT3G54390.1 sequence-specific DNA binding transcription factors)

HSP 1 Score: 166.0 bits (419), Expect = 2.4e-41
Identity = 112/178 (62.92%), Postives = 124/178 (69.66%), Query Frame = 1


Query: 21  INHHLQLHLPDDKKNPVSTGDRLKRDEWSEGAVSTLLQAYESKWVLRNRAKLKGHDWEDV 80
           +NH   L  P      V   DRLKRDEWSEGAVSTLL+AYESKWVLRNRAKLKG DWEDV
Sbjct: 14  LNHDESLKKPSASSVVV---DRLKRDEWSEGAVSTLLEAYESKWVLRNRAKLKGQDWEDV 73

Query: 81  ARHVSSRANFTKSPKTQTQCKNKIESMKKRYRSESASA-ASSWPLYHRLHLLLRGNTTLT 140
           A+HVSSRA  TKSPKTQTQCKNKIESMKKRYRSESA+A  SSWPLY RL  LLRG     
Sbjct: 74  AKHVSSRATHTKSPKTQTQCKNKIESMKKRYRSESATADGSSWPLYPRLDHLLRGT---- 133

Query: 141 PPPPPPPPPPPPPPPSSHSPPPPLILVDPPPPSSPPFLPPQNSHGSNGVDRINPKFGF 198
                P P P    P + S   PL+L++PP P+     PPQ S+GSNGV +I  + GF
Sbjct: 134 ----QPQPQPQAVLPLNCS--VPLLLLEPPLPAVAH--PPQISYGSNGVGKIPKEDGF 176

[Close]

BLAST of Lsi04G000220 vs. TAIR10
Match: AT3G10030.1 (AT3G10030.1 aspartate/glutamate/uridylate kinase family protein)

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-15
Identity = 42/103 (40.78%), Postives = 61/103 (59.22%), Query Frame = 1


Query: 42  RLKRDEWSEGAVSTLLQAYESKWVLRNRAKLKGHDWEDVARHVSSRANFTKSPKTQTQCK 101
           R  R+EWS+ A++ LL AY  K+   NR  L+G DWE+VA  VS R    K  K+  QCK
Sbjct: 155 RKDREEWSDAAIACLLDAYSDKFTQLNRGNLRGRDWEEVASSVSERCE--KLSKSVEQCK 214

Query: 102 NKIESMKKRYR------SESASAASSWPLYHRLHLLLRGNTTL 139
           NKI+++KKRY+      S   +AAS WP + ++  ++  +  L
Sbjct: 215 NKIDNLKKRYKLERHRMSSGGTAASHWPWFKKMEDIVGNSLAL 255

[Close]

BLAST of Lsi04G000220 vs. TAIR10
Match: AT5G05550.2 (AT5G05550.2 sequence-specific DNA binding transcription factors)

HSP 1 Score: 77.0 bits (188), Expect = 1.5e-14
Identity = 36/90 (40.00%), Postives = 61/90 (67.78%), Query Frame = 1


Query: 44  KRDEWSEGAVSTLLQAYESKWVLRNRAKLKGHDWEDVARHVSSRANFTKSPKTQTQCKNK 103
           + D WSE A +TL++A+ +++V  N   L+ +DW+DVA  V+SR       KT  QCKN+
Sbjct: 20  REDWWSEEATATLVEAWGNRYVKLNHGNLRQNDWKDVADAVNSRHGDNSRKKTDLQCKNR 79

Query: 104 IESMKKRYRSESAS-AASSWPLYHRLHLLL 133
           ++++KK+Y++E A  + S+W  Y+RL +L+
Sbjct: 80  VDTLKKKYKTEKAKLSPSTWRFYNRLDVLI 109

[Close]

BLAST of Lsi04G000220 vs. TAIR10
Match: AT3G11100.1 (AT3G11100.1 sequence-specific DNA binding transcription factors)

HSP 1 Score: 76.6 bits (187), Expect = 1.9e-14
Identity = 36/89 (40.45%), Postives = 60/89 (67.42%), Query Frame = 1


Query: 44  KRDEWSEGAVSTLLQAYESKWVLRNRAKLKGHDWEDVARHVSSRANFTKSPKTQTQCKNK 103
           + D WSE A +TL++A+  ++V  NR  L+ +DW++VA  V+S ++    PKT  QCKN+
Sbjct: 18  REDWWSEDATATLIEAWGDRYVNLNRGNLRQNDWKEVADAVNS-SHGNGRPKTDVQCKNR 77

Query: 104 IESMKKRYRSESASAASSWPLYHRLHLLL 133
           I+++KK+Y++E A   S+W  + RL  L+
Sbjct: 78  IDTLKKKYKTEKAKPLSNWCFFDRLDFLI 105

[Close]

BLAST of Lsi04G000220 vs. TAIR10
Match: AT3G14180.1 (AT3G14180.1 sequence-specific DNA binding transcription factors)

HSP 1 Score: 70.9 bits (172), Expect = 1.0e-12
Identity = 48/141 (34.04%), Postives = 73/141 (51.77%), Query Frame = 1


Query: 9   SPP--TSQTSPSLLINHHLQLHLPDDKKNPVS--TGDRLKRDEWSEGAVSTLLQAYESKW 68
           +PP  +SQ  P  L    L +       N     TG   + D WSE A + L+ A+  ++
Sbjct: 41  TPPGNSSQKDPDALALALLPIQASGGGNNSSGRPTGGGGREDCWSEAATAVLIDAWGERY 100

Query: 69  VLRNRAKLKGHDWEDVARHVSSRANFTKSPKTQTQCKNKIESMKKRYRSESASAA----- 128
           +  +R  LK   W++VA  VSSR ++ K PKT  QCKN+I+++KK+Y+ E    A     
Sbjct: 101 LELSRGNLKQKHWKEVAEIVSSREDYGKIPKTDIQCKNRIDTVKKKYKQEKVRIANGGGR 160

Query: 129 SSWPLYHRLHLLLRGNTTLTP 141
           S W  + +L  L+ G+T   P
Sbjct: 161 SRWVFFDKLDRLI-GSTAKIP 180

[Close]

BLAST of Lsi04G000220 vs. NCBI nr
Match: gi|659092235|ref|XP_008446967.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103489520 [Cucumis melo])

HSP 1 Score: 237.3 bits (604), Expect = 2.4e-59
Identity = 141/211 (66.82%), Postives = 152/211 (72.04%), Query Frame = 1


Query: 2   EMKPSPSSPPTS-------QTSPSLLINHHLQLHLPDD----KKNPVSTGD-----RLKR 61
           E+K +PSSPPT+       QTSPSLL NHH    LPDD    K+N VSTG      RLKR
Sbjct: 18  EIKSTPSSPPTASLTLTQTQTSPSLLFNHHHHHQLPDDNPSPKENHVSTGGGGGGKRLKR 77

Query: 62  DEWSEGAVSTLLQAYESKWVLRNRAKLKGHDWEDVARHVSSRANFTKSPKTQTQCKNKIE 121
           DEWS+GAVSTLL AYESKW+LRNRAKLKGHDWEDVARHVSSR+NFTKS KT TQCKNKIE
Sbjct: 78  DEWSDGAVSTLLDAYESKWILRNRAKLKGHDWEDVARHVSSRSNFTKSSKTHTQCKNKIE 137

Query: 122 SMKKRYRSESASAASSWPLYHRLHLLLRGNTTLTPPPPPPPPPPPPPPPSSHSPPPPLI- 181
           SMKK  R+  ASAASSWP  HR+   L GN+ LTPPP               SPPPPL+ 
Sbjct: 138 SMKKSXRAIPASAASSWPWNHRVQHFLGGNSNLTPPP---------------SPPPPLVD 197

Query: 182 LVD--PPPPSSPPFLPPQNSHGSNGVDRINP 194
           LVD  PPPPS PPFL PQNSHGSNGVD INP
Sbjct: 198 LVDPPPPPPSPPPFLSPQNSHGSNGVDNINP 213

[Close]

BLAST of Lsi04G000220 vs. NCBI nr
Match: gi|778706853|ref|XP_004142481.2| (PREDICTED: trihelix transcription factor ASIL2 [Cucumis sativus])

HSP 1 Score: 211.5 bits (537), Expect = 1.4e-51
Identity = 128/209 (61.24%), Postives = 135/209 (64.59%), Query Frame = 1


Query: 1   MEMKPSPSSPPTS--------QTSPSLLINHHLQLHLPDD----KKNPVSTGD----RLK 60
           ME+KP+PSSPPT         QTSPSLL NHH QL  PDD    K NPVS G     RLK
Sbjct: 1   MEIKPTPSSPPTITSLTQTQIQTSPSLLFNHHHQL--PDDNPSPKTNPVSNGGGRGRRLK 60

Query: 61  RDEWSEGAVSTLLQAYESKWVLRNRAKLKGHDWEDVARHVSSRANFTKSPKTQTQCKNKI 120
           RDEWSEGAVS L+ AYESKW LRNRAKLKGHDWEDVARHVSSR+N TKS KT TQCKNKI
Sbjct: 61  RDEWSEGAVSILIDAYESKWKLRNRAKLKGHDWEDVARHVSSRSNLTKSSKTHTQCKNKI 120

Query: 121 ESMKKRYRSESASAASSWPLYHRLHLLLRGNTTLTPPPPPPPPPPPPPPPSSHSPPPPLI 180
           ESMKK+ R E A   SSWPLYHR+  L+ GNT LTP PPP                    
Sbjct: 121 ESMKKKCRQEPAD--SSWPLYHRILPLVGGNTNLTPSPPPS------------------- 174

Query: 181 LVDPPPPSSPPFLPPQNSHGSNGVDRINP 194
                       LPPQNSHGSNGVD INP
Sbjct: 181 ------------LPPQNSHGSNGVDNINP 174

[Close]

BLAST of Lsi04G000220 vs. NCBI nr
Match: gi|596002566|ref|XP_007218233.1| (hypothetical protein PRUPE_ppa007968mg [Prunus persica])

HSP 1 Score: 196.4 bits (498), Expect = 4.7e-47
Identity = 131/216 (60.65%), Postives = 148/216 (68.52%), Query Frame = 1


Query: 6   SPSSPPTSQTSPSLLINHHLQLHLPDDK-KNPVSTG---DRLKRDEWSEGAVSTLLQAYE 65
           +PS PP + TS +       +L  P  K + P+  G   DRLKRDEWSEGAVS+LL+AYE
Sbjct: 9   NPSLPPNNYTSTTK------ELESPRSKPQQPLGVGGSSDRLKRDEWSEGAVSSLLEAYE 68

Query: 66  SKWVLRNRAKLKGHDWEDVARHVSSRANFTKSPKTQTQCKNKIESMKKRYRSESASA-AS 125
           +KWVLRNRAKLKGHDWEDVARHVSSRAN TKSPKTQTQCKNKIESMKKRYRSESA+A  S
Sbjct: 69  TKWVLRNRAKLKGHDWEDVARHVSSRANCTKSPKTQTQCKNKIESMKKRYRSESATADGS 128

Query: 126 SWPLYHRLHLLLRGN-------------TTLTPPPPPPPPP-----PPPPPPSSHSPPPP 185
           SWPLY RL LLLRG+             T    PPPPPPPP     PPPPP ++H    P
Sbjct: 129 SWPLYPRLDLLLRGSGPSPTAASAAATVTAAAIPPPPPPPPLPVQLPPPPPQNNH----P 188

Query: 186 LILVDPP---PPSSPPFLPP------QNSHGSNGVD 190
           L+L++P    PP  PP  PP      QNS+GSNGVD
Sbjct: 189 LMLLEPSVSLPPQPPPTAPPQPIGTAQNSYGSNGVD 214

[Close]

BLAST of Lsi04G000220 vs. NCBI nr
Match: gi|728807453|gb|KHF97594.1| (hypothetical protein F383_13519 [Gossypium arboreum])

HSP 1 Score: 193.7 bits (491), Expect = 3.0e-46
Identity = 129/215 (60.00%), Postives = 150/215 (69.77%), Query Frame = 1


Query: 12  TSQTSPSLLINHHLQLHLPDD--KKNPVST-----GDRLKRDEWSEGAVSTLLQAYESKW 71
           T+Q +PSLL N+++ +   D   KK+P +T     GDRLKRDEWSEGAVS+LL+AYE+KW
Sbjct: 5   TNQENPSLLSNNNISITKEDSSPKKHPGNTAAAGGGDRLKRDEWSEGAVSSLLEAYENKW 64

Query: 72  VLRNRAKLKGHDWEDVARHVSSRANFTKSPKTQTQCKNKIESMKKRYRSESASA-ASSWP 131
           VLRNRAKLKGHDWEDVAR+VS+RAN TKSPKTQTQCKNKIESMKKRYRSESA+A  SSWP
Sbjct: 65  VLRNRAKLKGHDWEDVARYVSARANCTKSPKTQTQCKNKIESMKKRYRSESATADGSSWP 124

Query: 132 LYHRLHLLLRGNTTLTPPPPPPPPPPPPPPPSSHSP----PPPLILVDP----------- 191
           LY RL LLLRG+T   PPP  PP   P   P + +P    PP + L +P           
Sbjct: 125 LYPRLDLLLRGSTAPPPPPLLPPQLQPSAVPQAATPISTNPPLMTLPEPSMMVVLQQQQQ 184

Query: 192 -PPPSSPPFLPP------QNSHGSNGVDRINPKFG 197
            PPP  PP L P      QNSHGSNG+DRI  + G
Sbjct: 185 HPPPPPPPHLAPQLPGTTQNSHGSNGIDRIPKEDG 219

[Close]

BLAST of Lsi04G000220 vs. NCBI nr
Match: gi|763808094|gb|KJB74996.1| (hypothetical protein B456_012G018400 [Gossypium raimondii])

HSP 1 Score: 192.2 bits (487), Expect = 8.8e-46
Identity = 132/214 (61.68%), Postives = 151/214 (70.56%), Query Frame = 1


Query: 12  TSQTSPSLLINHHLQLHLPDD--KKNPVST-----GDRLKRDEWSEGAVSTLLQAYESKW 71
           T+Q +PSLL N+++ +   D   KK+P +T     GDRLKRDEWSEGAVS+LL+AYE+KW
Sbjct: 5   TNQENPSLLSNNNISITKEDSSPKKHPGNTAAAGGGDRLKRDEWSEGAVSSLLEAYENKW 64

Query: 72  VLRNRAKLKGHDWEDVARHVSSRANFTKSPKTQTQCKNKIESMKKRYRSESASA-ASSWP 131
           VLRNRAKLKGHDWEDVAR+VS+RAN TKSPKTQTQCKNKIESMKKRYRSESA+A  SSWP
Sbjct: 65  VLRNRAKLKGHDWEDVARYVSARANCTKSPKTQTQCKNKIESMKKRYRSESATADGSSWP 124

Query: 132 LYHRLHLLLRGNTTLTPPPPPPPPPPPPP-------------PPSSHSPPPPLILV---- 191
           LY RL LLLRG+T   PPPPP  PP   P             PP    P P +++V    
Sbjct: 125 LYPRLDLLLRGST--APPPPPLLPPQLQPSAVPQAATPISTNPPLMTLPEPSMMVVLQQQ 184

Query: 192 --DPPPPSSPPFLP--PQNSHGSNGVDRINPKFG 197
              PPPP   P LP   QNSHGSNG+DRI PK G
Sbjct: 185 HPPPPPPHLAPQLPGTTQNSHGSNGIDRI-PKDG 215

The following BLAST results are available for this feature:

BLAST of Lsi04G000220 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ASIL2_ARATH	1.9e-11	34.04	Trihelix transcription factor ASIL2 OS=Arabidopsis thaliana GN=ASIL2 PE=2 SV=1	[more]

BLAST of Lsi04G000220 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRQ8_CUCSA	9.8e-52	61.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G623880 PE=4 SV=1	[more]
M5X048_PRUPE	3.3e-47	60.65	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007968mg PE=4 SV=1	[more]
A0A0B0MA23_GOSAR	2.1e-46	60.00	Uncharacterized protein OS=Gossypium arboreum GN=F383_13519 PE=4 SV=1	[more]
A0A0D2V0H7_GOSRA	6.1e-46	61.68	Uncharacterized protein OS=Gossypium raimondii GN=B456_012G018400 PE=4 SV=1	[more]
A0A0D2VUE2_GOSRA	1.0e-45	60.75	Uncharacterized protein OS=Gossypium raimondii GN=B456_012G018400 PE=4 SV=1	[more]

BLAST of Lsi04G000220 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G54390.1	2.4e-41	62.92	sequence-specific DNA binding transcription factors	[more]
AT3G10030.1	1.3e-15	40.78	aspartate/glutamate/uridylate kinase family protein	[more]
AT5G05550.2	1.5e-14	40.00	sequence-specific DNA binding transcription factors	[more]
AT3G11100.1	1.9e-14	40.45	sequence-specific DNA binding transcription factors	[more]
AT3G14180.1	1.0e-12	34.04	sequence-specific DNA binding transcription factors	[more]

BLAST of Lsi04G000220 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659092235\|ref\|XP_008446967.1\|	2.4e-59	66.82	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103489520 [Cucumis me...	[more]
gi\|778706853\|ref\|XP_004142481.2\|	1.4e-51	61.24	PREDICTED: trihelix transcription factor ASIL2 [Cucumis sativus]	[more]
gi\|596002566\|ref\|XP_007218233.1\|	4.7e-47	60.65	hypothetical protein PRUPE_ppa007968mg [Prunus persica]	[more]
gi\|728807453\|gb\|KHF97594.1\|	3.0e-46	60.00	hypothetical protein F383_13519 [Gossypium arboreum]	[more]
gi\|763808094\|gb\|KJB74996.1\|	8.8e-46	61.68	hypothetical protein B456_012G018400 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi04G000220.1	Lsi04G000220.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31307	FAMILY NOT NAMED	coord: 38..190 score: 1.9
None	No IPR available	PANTHER	PTHR31307:SF7	SUBFAMILY NOT NAMED	coord: 38..190 score: 1.9
None	No IPR available	PFAM	PF13837	Myb_DNA-bind_4	coord: 45..129 score: 6.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi04G000220	Csa5G623880	Cucumber (Chinese Long) v2	culsiB368
Lsi04G000220	CSPI05G27670	Wild cucumber (PI 183967)	cpilsiB372
Lsi04G000220	Cucsa.307880	Cucumber (Gy14) v1	cgylsiB497
Lsi04G000220	CmaCh18G008530	Cucurbita maxima (Rimu)	cmalsiB379
Lsi04G000220	CmaCh04G013240	Cucurbita maxima (Rimu)	cmalsiB669
Lsi04G000220	CmoCh04G013970	Cucurbita moschata (Rifu)	cmolsiB660
Lsi04G000220	CmoCh18G008600	Cucurbita moschata (Rifu)	cmolsiB364
Lsi04G000220	Cla009931	Watermelon (97103) v1	lsiwmB320
Lsi04G000220	MELO3C012478	Melon (DHL92) v3.5.1	lsimeB281
Lsi04G000220	ClCG05G026870	Watermelon (Charleston Gray)	lsiwcgB291
Lsi04G000220	MELO3C012478.2	Melon (DHL92) v3.6.1	lsimedB297
Lsi04G000220	Cla97C05G109140	Watermelon (97103) v2	lsiwmbB292
Lsi04G000220	Bhi07G001022	Wax gourd	lsiwgoB383
Lsi04G000220	Cp4.1LG01g09660	Cucurbita pepo (Zucchini)	cpelsiB352
Lsi04G000220	Cp4.1LG09g04530	Cucurbita pepo (Zucchini)	cpelsiB032
Lsi04G000220	CsGy5G027110	Cucumber (Gy14) v2	cgyblsiB337
Lsi04G000220	Carg01998	Silver-seed gourd	carlsiB767
Lsi04G000220	CsaV3_5G036820	Cucumber (Chinese Long) v3	cuclsiB393

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi04G000220	Silver-seed gourd	carlsiB664