Lsi04G000030 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi04G000030
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionPlant/F8L15-130 protein
Locationchr04 : 46945 .. 47439 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCGTGTTCAAGGGTGTCGGATTAGGTTTAACTTTTACGAATGCCAATTTCAGTTGCTATTTTCCTTCTAATACAAGAATCTTCCCCCAATCTGTCACTTCAAACCCTGAATTTCATCCAATTTCTCTTCGTTCTCGTACATTGCTTTTTGAAAATGGCAACGATTCTAAGTTTGACACCAAGAGCACTTCTACACCGACTACGACTGATGCTAAGAGCTCTGGAACCTCTGCTAGAAGTCGTCGATTGCTAAAGCTTCGTGAAGAGAAGCGCAAACGAGAACATGATCGTCTCCACAATTACCCTGCCTGGGCGAAGTCTCTCTCTCTCTGTTCTTTCTGTATGATTGTGTGTTTCGTTTTTCTTTTTTTCACTGTGTTTGATTGCTAATGAAATCGCCGGGGAAACTACAGAGTGTTAGAAGATGCCTGCAAAAACGATGCGGAATTACGACTGTTCTTTGTGATAGCATTGGCAATCCAGAGGAAATGA

mRNA sequence

ATGTCCGTGTTCAAGGGTGTCGGATTAGGTTTAACTTTTACGAATGCCAATTTCAGTTGCTATTTTCCTTCTAATACAAGAATCTTCCCCCAATCTGTCACTTCAAACCCTGAATTTCATCCAATTTCTCTTCGTTCTCGTACATTGCTTTTTGAAAATGGCAACGATTCTAAGTTTGACACCAAGAGCACTTCTACACCGACTACGACTGATGCTAAGAGCTCTGGAACCTCTGCTAGAAGTCGTCGATTGCTAAAGCTTCGTGAAGAGAAGCGCAAACGAGAACATGATCGTCTCCACAATTACCCTGCCTGGGCGAAAGTGTTAGAAGATGCCTGCAAAAACGATGCGGAATTACGACTGTTCTTTGTGATAGCATTGGCAATCCAGAGGAAATGA

Coding sequence (CDS)

ATGTCCGTGTTCAAGGGTGTCGGATTAGGTTTAACTTTTACGAATGCCAATTTCAGTTGCTATTTTCCTTCTAATACAAGAATCTTCCCCCAATCTGTCACTTCAAACCCTGAATTTCATCCAATTTCTCTTCGTTCTCGTACATTGCTTTTTGAAAATGGCAACGATTCTAAGTTTGACACCAAGAGCACTTCTACACCGACTACGACTGATGCTAAGAGCTCTGGAACCTCTGCTAGAAGTCGTCGATTGCTAAAGCTTCGTGAAGAGAAGCGCAAACGAGAACATGATCGTCTCCACAATTACCCTGCCTGGGCGAAAGTGTTAGAAGATGCCTGCAAAAACGATGCGGAATTACGACTGTTCTTTGTGATAGCATTGGCAATCCAGAGGAAATGA

Protein sequence

MSVFKGVGLGLTFTNANFSCYFPSNTRIFPQSVTSNPEFHPISLRSRTLLFENGNDSKFDTKSTSTPTTTDAKSSGTSARSRRLLKLREEKRKREHDRLHNYPAWAKVLEDACKNDAELRLFFVIALAIQRK
BLAST of Lsi04G000030 vs. TrEMBL
Match: M5XDF4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008904mg PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.7e-15
Identity = 52/91 (57.14%), Postives = 60/91 (65.93%), Query Frame = 1

Query: 31  QSVTSNPEFH-PISLRSRTLLFENGNDSKFDTKSTSTPTTTDAKSSGTSARSRRLLKLRE 90
           ++V  NP  + P   R   L+    N +   T          AK SGT+AR RRLLK+RE
Sbjct: 36  KTVYPNPNSYLPKPPRLLLLVCATANGTNTSTNDLGLGGGGGAKGSGTTARGRRLLKIRE 95

Query: 91  EKRKREHDRLHNYPAWAKVLEDACKNDAELR 121
           EKRKREHDRLHNYPAWAKVLEDACK+DAELR
Sbjct: 96  EKRKREHDRLHNYPAWAKVLEDACKDDAELR 126

BLAST of Lsi04G000030 vs. TrEMBL
Match: A0A078HVE6_BRANA (BnaAnng06110D protein OS=Brassica napus GN=BnaAnng06110D PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.7e-15
Identity = 52/102 (50.98%), Postives = 65/102 (63.73%), Query Frame = 1

Query: 19  SCYFPSNTRIFPQSVTSNPEFHPISLRSRTLLFENGNDSKFDTKSTSTPTTTDAKSSGTS 78
           SC    N  + P  +   P+  P+SL  R L       S F   +TS   + D K SGT+
Sbjct: 11  SCTLNLNLPLSPSILV--PQRQPLSLHKRNL------PSLFSVSATSDNISADKKGSGTT 70

Query: 79  ARSRRLLKLREEKRKREHDRLHNYPAWAKVLEDACKNDAELR 121
           AR RRLLK+REEKRKR++DRLH+YP+WAKVLE ACK+D ELR
Sbjct: 71  ARGRRLLKVREEKRKRDYDRLHDYPSWAKVLESACKDDEELR 104

BLAST of Lsi04G000030 vs. TrEMBL
Match: A0A068V8Y6_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00018256001 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 4.8e-15
Identity = 42/49 (85.71%), Postives = 47/49 (95.92%), Query Frame = 1

Query: 72  AKSSGTSARSRRLLKLREEKRKREHDRLHNYPAWAKVLEDACKNDAELR 121
           +K SGT+AR RRL+K+REEKRKRE+DRLHNYPAWAKVLEDACKNDAELR
Sbjct: 23  SKGSGTTARGRRLIKVREEKRKREYDRLHNYPAWAKVLEDACKNDAELR 71

BLAST of Lsi04G000030 vs. TrEMBL
Match: V4UC78_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10015943mg PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 8.2e-15
Identity = 42/49 (85.71%), Postives = 46/49 (93.88%), Query Frame = 1

Query: 72  AKSSGTSARSRRLLKLREEKRKREHDRLHNYPAWAKVLEDACKNDAELR 121
           AK SGTSAR RRLLK+REEKR+REHDRLHNYP+WAKVLEDACK+D ELR
Sbjct: 85  AKGSGTSARGRRLLKVREEKRRREHDRLHNYPSWAKVLEDACKDDEELR 133

BLAST of Lsi04G000030 vs. TrEMBL
Match: A0A067GBT3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g018584mg PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.8e-14
Identity = 54/117 (46.15%), Postives = 66/117 (56.41%), Query Frame = 1

Query: 14  TNANFSCYFPSNTRIFPQSVTS----------NPEFHPISLRSRTLLFENGNDSKFDTKS 73
           +N  F  +  ++  +FP S +            P   PI   +     + G  S    K 
Sbjct: 23  SNPAFQFWASNSLTVFPNSKSECFSVITTAKKGPRLQPIHAAASE---DGGRSSSGRNKR 82

Query: 74  TSTPTTTDAKSSGTSARSRRLLKLREEKRKREHDRLHNYPAWAKVLEDACKNDAELR 121
                  DAK SGTSAR RRLLK+REEKR+REHDRLHNYP+WAKVLEDACK+D ELR
Sbjct: 83  NEV---VDAKGSGTSARGRRLLKVREEKRRREHDRLHNYPSWAKVLEDACKDDEELR 133

BLAST of Lsi04G000030 vs. TAIR10
Match: AT5G08400.1 (AT5G08400.1 Protein of unknown function (DUF3531))

HSP 1 Score: 59.7 bits (143), Expect = 1.6e-09
Identity = 46/135 (34.07%), Postives = 59/135 (43.70%), Query Frame = 1

Query: 19  SCYFPSNTRIFPQSVTSNPEFHPISLRSRTLLFENGNDSKFDTKSTSTPTTTDAKSSGTS 78
           SC    N    P  V+    F        TL+  + N      +     +  + K SGT+
Sbjct: 11  SCTMNLNFAFSPFLVSQRQPFSSHKRNLHTLVAVSANSDNLAGEDNGGISAAN-KGSGTT 70

Query: 79  ARSRRLLKLREEKRKREHDRLHNYPAWAK------------------------------- 121
           AR RRLLK+REEKRKR++DRLH+YP+WAK                               
Sbjct: 71  ARGRRLLKVREEKRKRDYDRLHDYPSWAKYLFLSFSFALQVFVFLPKSRESVNLFLVNDK 130

BLAST of Lsi04G000030 vs. NCBI nr
Match: gi|449458716|ref|XP_004147093.1| (PREDICTED: uncharacterized protein LOC101211689 [Cucumis sativus])

HSP 1 Score: 194.1 bits (492), Expect = 1.5e-46
Identity = 102/121 (84.30%), Postives = 106/121 (87.60%), Query Frame = 1

Query: 1   MSVFKGVGLGLTFTNANFSCYFPSNTRIFPQSVTSNPEFHPISLRSRTLLFENGNDSKFD 60
           MSVF G+GLGL FTN N +C F SNTR FPQS+TS PEF PISLRSR LL ENG+DSKFD
Sbjct: 1   MSVFNGIGLGLAFTNPNSTCIFHSNTRFFPQSLTSIPEFRPISLRSRALLSENGDDSKFD 60

Query: 61  TKSTSTPTTTDA-KSSGTSARSRRLLKLREEKRKREHDRLHNYPAWAKVLEDACKNDAEL 120
             STSTPT TDA KSSGTSARSRRLLKLREEKRKREHDRLHNYPAWAKVLEDACKNDAEL
Sbjct: 61  AVSTSTPTATDAKKSSGTSARSRRLLKLREEKRKREHDRLHNYPAWAKVLEDACKNDAEL 120

BLAST of Lsi04G000030 vs. NCBI nr
Match: gi|659090247|ref|XP_008445913.1| (PREDICTED: uncharacterized protein LOC103488796 [Cucumis melo])

HSP 1 Score: 193.0 bits (489), Expect = 3.4e-46
Identity = 102/121 (84.30%), Postives = 105/121 (86.78%), Query Frame = 1

Query: 1   MSVFKGVGLGLTFTNANFSCYFPSNTRIFPQSVTSNPEFHPISLRSRTLLFENGNDSKFD 60
           MSV  GVGLGL FTN N +C F SNTR FPQS+ S PEFHPISLRSR LL ENG+DSKFD
Sbjct: 1   MSVLHGVGLGLAFTNPNSTCNFHSNTRFFPQSLASVPEFHPISLRSRALLSENGDDSKFD 60

Query: 61  TKSTSTPTTTD-AKSSGTSARSRRLLKLREEKRKREHDRLHNYPAWAKVLEDACKNDAEL 120
             STSTPTTTD  KSSGTSARSRRLLKLREEKRKREHDRLHNYPAWAKVLEDACKNDAEL
Sbjct: 61  AMSTSTPTTTDPKKSSGTSARSRRLLKLREEKRKREHDRLHNYPAWAKVLEDACKNDAEL 120

BLAST of Lsi04G000030 vs. NCBI nr
Match: gi|645228686|ref|XP_008221113.1| (PREDICTED: uncharacterized protein LOC103321126 [Prunus mume])

HSP 1 Score: 90.1 bits (222), Expect = 3.1e-15
Identity = 52/91 (57.14%), Postives = 60/91 (65.93%), Query Frame = 1

Query: 31  QSVTSNPEFH-PISLRSRTLLFENGNDSKFDTKSTSTPTTTDAKSSGTSARSRRLLKLRE 90
           ++V  NP  + P   R   L+    N +   T          AK SGT+AR RRLLK+RE
Sbjct: 36  KTVFPNPNSYLPKPPRLLLLVCATANGTNTSTNELGLGVGGGAKGSGTTARGRRLLKIRE 95

Query: 91  EKRKREHDRLHNYPAWAKVLEDACKNDAELR 121
           EKRKREHDRLHNYPAWAKVLEDACK+DAELR
Sbjct: 96  EKRKREHDRLHNYPAWAKVLEDACKDDAELR 126

BLAST of Lsi04G000030 vs. NCBI nr
Match: gi|596163148|ref|XP_007222953.1| (hypothetical protein PRUPE_ppa008904mg [Prunus persica])

HSP 1 Score: 89.4 bits (220), Expect = 5.3e-15
Identity = 52/91 (57.14%), Postives = 60/91 (65.93%), Query Frame = 1

Query: 31  QSVTSNPEFH-PISLRSRTLLFENGNDSKFDTKSTSTPTTTDAKSSGTSARSRRLLKLRE 90
           ++V  NP  + P   R   L+    N +   T          AK SGT+AR RRLLK+RE
Sbjct: 36  KTVYPNPNSYLPKPPRLLLLVCATANGTNTSTNDLGLGGGGGAKGSGTTARGRRLLKIRE 95

Query: 91  EKRKREHDRLHNYPAWAKVLEDACKNDAELR 121
           EKRKREHDRLHNYPAWAKVLEDACK+DAELR
Sbjct: 96  EKRKREHDRLHNYPAWAKVLEDACKDDAELR 126

BLAST of Lsi04G000030 vs. NCBI nr
Match: gi|674892015|emb|CDY40748.1| (BnaAnng06110D [Brassica napus])

HSP 1 Score: 89.4 bits (220), Expect = 5.3e-15
Identity = 52/102 (50.98%), Postives = 65/102 (63.73%), Query Frame = 1

Query: 19  SCYFPSNTRIFPQSVTSNPEFHPISLRSRTLLFENGNDSKFDTKSTSTPTTTDAKSSGTS 78
           SC    N  + P  +   P+  P+SL  R L       S F   +TS   + D K SGT+
Sbjct: 11  SCTLNLNLPLSPSILV--PQRQPLSLHKRNL------PSLFSVSATSDNISADKKGSGTT 70

Query: 79  ARSRRLLKLREEKRKREHDRLHNYPAWAKVLEDACKNDAELR 121
           AR RRLLK+REEKRKR++DRLH+YP+WAKVLE ACK+D ELR
Sbjct: 71  ARGRRLLKVREEKRKRDYDRLHDYPSWAKVLESACKDDEELR 104

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
M5XDF4_PRUPE3.7e-1557.14Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008904mg PE=4 SV=1[more]
A0A078HVE6_BRANA3.7e-1550.98BnaAnng06110D protein OS=Brassica napus GN=BnaAnng06110D PE=4 SV=1[more]
A0A068V8Y6_COFCA4.8e-1585.71Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00018256001 PE=4 SV=1[more]
V4UC78_9ROSI8.2e-1585.71Uncharacterized protein OS=Citrus clementina GN=CICLE_v10015943mg PE=4 SV=1[more]
A0A067GBT3_CITSI1.8e-1446.15Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g018584mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G08400.11.6e-0934.07 Protein of unknown function (DUF3531)[more]
Match NameE-valueIdentityDescription
gi|449458716|ref|XP_004147093.1|1.5e-4684.30PREDICTED: uncharacterized protein LOC101211689 [Cucumis sativus][more]
gi|659090247|ref|XP_008445913.1|3.4e-4684.30PREDICTED: uncharacterized protein LOC103488796 [Cucumis melo][more]
gi|645228686|ref|XP_008221113.1|3.1e-1557.14PREDICTED: uncharacterized protein LOC103321126 [Prunus mume][more]
gi|596163148|ref|XP_007222953.1|5.3e-1557.14hypothetical protein PRUPE_ppa008904mg [Prunus persica][more]
gi|674892015|emb|CDY40748.1|5.3e-1550.98BnaAnng06110D [Brassica napus][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0010207 photosystem II assembly
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi04G000030.1Lsi04G000030.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33102FAMILY NOT NAMEDcoord: 29..120
score: 1.4
NoneNo IPR availablePANTHERPTHR33102:SF13DVL17coord: 29..120
score: 1.4

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None