Lsi03G016240 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G016240
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Zinc finger protein
Location	chr03 : 27353314 .. 27353949 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTTTTCGGACAACTCCAATGCCTCTGATGATGAACATTGCAAAGTTCCGATATCGGAACAACCCGAGACGGAGACGGGGATAAAAACGAAGGACGAAACACGAGTTTTTTACTGCAAATTTTGCAGTAGAAAGTTCTCGAATTTACAGGCTTTGGGAGGGCATCAAAACGCCCATAAACGAGAAAGAGATATCGCCAAAAGAGAGAAGGCCGCCGCCGTGAGAAGTACGGACACGTTTGATTCCATTGGGTCTTTTTACCATCCGTATTATTCGGCAATGGCGATTCACTCGCTGCGAAACAAAGCCCTAGGGTTTTCGATTCGGCCGCAATCGATGATTCGGAAACCGAGTCGGTCCCGAGTTGAGTTGGGTAGCGCCGCAGCTTATGGATATCGGTGGTGGTCGAGAGAACAATACATGGCGGCGGCGGTGGCAGCGCAACAGGAGCAATTACAGTCTGGGGGATTATTACAAGGGGTTAATAAGGGTACTGGAAGAGTGGATTTGGCTGCCAGTGGATTGGAATCCATAGCCATGGCGAACAGAAACGCTTCTTCTTCTTCTTCCTCAAAGATTTTTGGTCCTGATCAGTACATTATCAATGGCCTTGATTTGTCTCTCAAACTTTGA

mRNA sequence

ATGTCTTTTTCGGACAACTCCAATGCCTCTGATGATGAACATTGCAAAGTTCCGATATCGGAACAACCCGAGACGGAGACGGGGATAAAAACGAAGGACGAAACACGAGTTTTTTACTGCAAATTTTGCAGTAGAAAGTTCTCGAATTTACAGGCTTTGGGAGGGCATCAAAACGCCCATAAACGAGAAAGAGATATCGCCAAAAGAGAGAAGGCCGCCGCCGTGAGAAGTACGGACACGTTTGATTCCATTGGGTCTTTTTACCATCCGTATTATTCGGCAATGGCGATTCACTCGCTGCGAAACAAAGCCCTAGGGTTTTCGATTCGGCCGCAATCGATGATTCGGAAACCGAGTCGGTCCCGAGTTGAGTTGGGTAGCGCCGCAGCTTATGGATATCGGTGGTGGTCGAGAGAACAATACATGGCGGCGGCGGTGGCAGCGCAACAGGAGCAATTACAGTCTGGGGGATTATTACAAGGGGTTAATAAGGGTACTGGAAGAGTGGATTTGGCTGCCAGTGGATTGGAATCCATAGCCATGGCGAACAGAAACGCTTCTTCTTCTTCTTCCTCAAAGATTTTTGGTCCTGATCAGTACATTATCAATGGCCTTGATTTGTCTCTCAAACTTTGA

Coding sequence (CDS)

ATGTCTTTTTCGGACAACTCCAATGCCTCTGATGATGAACATTGCAAAGTTCCGATATCGGAACAACCCGAGACGGAGACGGGGATAAAAACGAAGGACGAAACACGAGTTTTTTACTGCAAATTTTGCAGTAGAAAGTTCTCGAATTTACAGGCTTTGGGAGGGCATCAAAACGCCCATAAACGAGAAAGAGATATCGCCAAAAGAGAGAAGGCCGCCGCCGTGAGAAGTACGGACACGTTTGATTCCATTGGGTCTTTTTACCATCCGTATTATTCGGCAATGGCGATTCACTCGCTGCGAAACAAAGCCCTAGGGTTTTCGATTCGGCCGCAATCGATGATTCGGAAACCGAGTCGGTCCCGAGTTGAGTTGGGTAGCGCCGCAGCTTATGGATATCGGTGGTGGTCGAGAGAACAATACATGGCGGCGGCGGTGGCAGCGCAACAGGAGCAATTACAGTCTGGGGGATTATTACAAGGGGTTAATAAGGGTACTGGAAGAGTGGATTTGGCTGCCAGTGGATTGGAATCCATAGCCATGGCGAACAGAAACGCTTCTTCTTCTTCTTCCTCAAAGATTTTTGGTCCTGATCAGTACATTATCAATGGCCTTGATTTGTCTCTCAAACTTTGA

Protein sequence

MSFSDNSNASDDEHCKVPISEQPETETGIKTKDETRVFYCKFCSRKFSNLQALGGHQNAHKRERDIAKREKAAAVRSTDTFDSIGSFYHPYYSAMAIHSLRNKALGFSIRPQSMIRKPSRSRVELGSAAAYGYRWWSREQYMAAAVAAQQEQLQSGGLLQGVNKGTGRVDLAASGLESIAMANRNASSSSSSKIFGPDQYIINGLDLSLKL

Homology

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BLAST of Lsi03G016240 vs. Swiss-Prot
Match: ZFP3_ARATH (Zinc finger protein 3 OS=Arabidopsis thaliana GN=ZFP3 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.8e-10
Identity = 43/109 (39.45%), Postives = 54/109 (49.54%), Query Frame = 1


Query: 31  TKDETRVFYCKFCSRKFSNLQALGGHQNAHKRERDIAKREKAAAVRSTDTFDSIGSFYHP 90
           T  E ++F C +C R F + QALGGHQNAHKRER +AKR +  A        S  +F HP
Sbjct: 54  TSTEQKLFSCNYCQRTFYSSQALGGHQNAHKRERTLAKRGQRMAA-------SASAFGHP 113

Query: 91  Y-YSAMAIHSLRNKALGFSIRPQSMIRKPSRSRVELGSAAAYGYRWWSR 139
           Y +S +  H   N      I+  S+  K S      G    YG   WSR
Sbjct: 114 YGFSPLPFHGQYNNHRSLGIQAHSISHKLSSYN---GFGGHYGQINWSR 152

[Close]

BLAST of Lsi03G016240 vs. Swiss-Prot
Match: ZFP1_ARATH (Zinc finger protein 1 OS=Arabidopsis thaliana GN=ZFP1 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.4e-09
Identity = 38/92 (41.30%), Postives = 48/92 (52.17%), Query Frame = 1


Query: 34  ETRVFYCKFCSRKFSNLQALGGHQNAHKRERDIAKREKAAAVRSTDTFDSIGSFYHPYYS 93
           + RVF C +C RKF + QALGGHQNAHKRER +AKR +   +  +    S  +F H   S
Sbjct: 64  DPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQYYKMTLSSLPSSAFAFGHGSVS 123

Query: 94  AMA------IHSLRNKALGFSIRPQSMIRKPS 120
             A      +H   N      I+  S I KPS
Sbjct: 124 RFASMASLPLHGSVNNRSTLGIQAHSTIHKPS 155

[Close]

BLAST of Lsi03G016240 vs. Swiss-Prot
Match: KNU_ARATH (Zinc finger protein KNUCKLES OS=Arabidopsis thaliana GN=KNU PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.6e-08
Identity = 28/56 (50.00%), Postives = 33/56 (58.93%), Query Frame = 1


Query: 36 RVFYCKFCSRKFSNLQALGGHQNAHKRERDIAKREKAAAVRSTDTFDSIGSFYHPY 92
          R+F C++C RKF   QALGGHQNAHKRER  A+R       S    D   +F  PY
Sbjct: 36 RLFPCQYCPRKFYTSQALGGHQNAHKRERAAARRNLGVLANSPPILDDNNTFLRPY 91

[Close]

BLAST of Lsi03G016240 vs. Swiss-Prot
Match: ZFP4_ARATH (Zinc finger protein 4 OS=Arabidopsis thaliana GN=ZFP4 PE=2 SV=2)

HSP 1 Score: 59.3 bits (142), Expect = 5.8e-08
Identity = 34/77 (44.16%), Postives = 46/77 (59.74%), Query Frame = 1


Query: 1   MSFSDNSNASDD---EHCKVPISE-----QPETETGIKTKDETRVFYCKFCSRKFSNLQA 60
           +SF++N+N + D       +P+S       PE +   +     RVF C +C RKF + QA
Sbjct: 40  LSFNNNNNNNLDLESSSLTLPLSSTSESSNPEQQQQQQPSVSKRVFSCNYCQRKFYSSQA 99

Query: 61  LGGHQNAHKRERDIAKR 70
           LGGHQNAHKRER +AKR
Sbjct: 100 LGGHQNAHKRERTLAKR 116

[Close]

BLAST of Lsi03G016240 vs. Swiss-Prot
Match: ZFP2_ARATH (Zinc finger protein 2 OS=Arabidopsis thaliana GN=ZFP2 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 7.6e-08
Identity = 28/51 (54.90%), Postives = 37/51 (72.55%), Query Frame = 1


Query: 33 DETRVFYCKFCSRKFSNLQALGGHQNAHKRERDIAKREKAAAVRSTDTFDS 84
          ++ RVF C +C RKF + QALGGHQNAHK ER +AK+ +    RS++T DS
Sbjct: 47 EQPRVFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSR-ELFRSSNTVDS 96

[Close]

BLAST of Lsi03G016240 vs. TrEMBL
Match: A0A0A0LBM7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G819820 PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 5.4e-77
Identity = 171/231 (74.03%), Postives = 182/231 (78.79%), Query Frame = 1


Query: 1   MSFSDNSNASDDEHC-------KVPISEQ---PETETGIKTKDETRVFYCKFCSRKFSNL 60
           MS SD    SDDEHC       KVP SEQ   PETET  KTKDETRVFYCKFCSRKFSNL
Sbjct: 1   MSSSDKPINSDDEHCNQDQDSSKVPESEQQKQPETET--KTKDETRVFYCKFCSRKFSNL 60

Query: 61  QALGGHQNAHKRERDIAKREKAAAV------RSTDTFDSIGSFYHPYYSAMAIHSLRNKA 120
           QALGGHQNAHKRERDIAKREKAAA       R+TD FDSIGSFYHPYYSAMAIH LRNK+
Sbjct: 61  QALGGHQNAHKRERDIAKREKAAAAAAAAGGRTTDAFDSIGSFYHPYYSAMAIHCLRNKS 120

Query: 121 LGFSIRPQSMIRKPSRSRVELG---SAAAYGYRWWSREQYMAAAVAAQQEQLQSGGLLQG 180
            G  IRPQS+IRKPSRSRVELG   +AAAYGYRWW REQY+AAAV AQQ+Q+QSGGLLQG
Sbjct: 121 PGIPIRPQSVIRKPSRSRVELGGGATAAAYGYRWWPREQYLAAAVVAQQQQIQSGGLLQG 180

Query: 181 VNKGTGRVDLAASGLESIAMANRNA-SSSSSSKIFGPDQYIINGLDLSLKL 212
           VN          +G  S+AMANRNA SSSSSS+IFG DQYI+NGLDLSLKL
Sbjct: 181 VN----------NGFASMAMANRNASSSSSSSQIFGADQYIVNGLDLSLKL 219

[Close]

BLAST of Lsi03G016240 vs. TrEMBL
Match: E5GBP2_CUCME (Zinc finger protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 1.2e-71
Identity = 161/231 (69.70%), Postives = 171/231 (74.03%), Query Frame = 1


Query: 1   MSFSDNSNASDDEHC----KVPISEQPETETGIKTKDETRVFYCKFCSRKFSNLQALGGH 60
           MS SD SNASD E          SEQPETE   K K+ETRVFYCKFCSR FSNLQALGGH
Sbjct: 1   MSSSDKSNASDHERNYNQDSFKESEQPETEA--KAKEETRVFYCKFCSRNFSNLQALGGH 60

Query: 61  QNAHKRERDIAKREKAAAV------RSTDTFDSIGSFYHPYYSAMAIHSLRNKALGFSIR 120
           QNAHKRERDIAKREKAAA       R+TD FDSIGSFYHPYYS MAIHSLRNK+ GF IR
Sbjct: 61  QNAHKRERDIAKREKAAAAAAAAGGRTTDVFDSIGSFYHPYYSVMAIHSLRNKSPGFPIR 120

Query: 121 PQSMIRKPSRSRVEL----------GSAAAYGYRWWSREQYMAAAVAAQQEQLQSGGLLQ 180
           PQS+IRKPSRSRVEL           +AAAYGYRWW REQYMAA  AAQQ+Q+QSGGLLQ
Sbjct: 121 PQSVIRKPSRSRVELSGGGATAAAAAAAAAYGYRWWPREQYMAALAAAQQQQIQSGGLLQ 180

Query: 181 GVNKGTGRVDLAASGLESIAMANRNASSSSSSKIFGPDQYIINGLDLSLKL 212
           G N          +G ESIAM N NASSSSS +IFG DQ I+NGLDLSLKL
Sbjct: 181 GFN----------NGFESIAMENINASSSSSPQIFGADQCIVNGLDLSLKL 219

[Close]

BLAST of Lsi03G016240 vs. TrEMBL
Match: F6H3J5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g05930 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.4e-16
Identity = 77/203 (37.93%), Postives = 100/203 (49.26%), Query Frame = 1


Query: 20  SEQPETETGIKTKDETRVFYCKFCSRKFSNLQALGGHQNAHKRERDIAKREKAAAVRSTD 79
           S Q  +E       E RVF C +C RKF + QALGGHQNAHKRER +AKR +        
Sbjct: 89  SSQTSSEIPQPADAEPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRLGAPMVA 148

Query: 80  TFDSIGS--FYHPYYSAMA---IHSLRNKALGFSIRPQSMIRKPSRSRVELGSAAAYGYR 139
              + G   F+H +YS+MA   +H   N++LG  I+  SMI KPS +    GS   YG+R
Sbjct: 149 AATAFGHPYFHHQHYSSMASLPLHGAYNRSLG--IQVHSMIHKPSLTTPSSGSGNLYGHR 208

Query: 140 WWSR---EQYMAA---AVAAQQEQLQSGGLLQGVNKGTGRVDLAASGLESIAMANRNASS 199
            WSR   +Q  A    AV    E + +G L +G   G GR D     + S A        
Sbjct: 209 SWSRPPIDQQPAVGRLAVENCHEGVTAGPLSRG---GIGRFDTVRMMINSQANEGIGGFC 268

Query: 200 SSSSKIFGPDQYIINGLDLSLKL 212
            +       +Q  +  LDLSLKL
Sbjct: 269 WTGGGRLKTNQDELQKLDLSLKL 286

[Close]

BLAST of Lsi03G016240 vs. TrEMBL
Match: A0A061GIJ6_THECC (C2H2 and C2HC zinc fingers superfamily protein, putative OS=Theobroma cacao GN=TCM_036928 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.5e-15
Identity = 52/118 (44.07%), Postives = 68/118 (57.63%), Query Frame = 1


Query: 26  ETGIKTKDETRVFYCKFCSRKFSNLQALGGHQNAHKRERDIAKREKAAAVRSTDTFDSIG 85
           ET   T  E RVF C +C RKF + QALGGHQNAHKRER +AKR +        +  + G
Sbjct: 76  ETPQPTDAEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRMGAHIAASATAFG 135

Query: 86  S--FYHPYYSAMA---IHSLRNKALGFSIRPQSMIRKPSRSRVELGSAAAYGYRWWSR 139
              F+H +YS++A   +H   N++LG  I+  SMI KPS      G  + YG+  WSR
Sbjct: 136 HPYFHHNHYSSLASLPLHGAYNRSLG--IQVHSMIHKPSHISSSTGFGSVYGHHSWSR 191

[Close]

BLAST of Lsi03G016240 vs. TrEMBL
Match: A0A0D2QA46_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G060900 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.5e-13
Identity = 69/201 (34.33%), Postives = 97/201 (48.26%), Query Frame = 1


Query: 20  SEQPETETGIKTKDETRVFYCKFCSRKFSNLQALGGHQNAHKRERDIAKREKAAAVRSTD 79
           S  PE ET   T  E RVF C +C RKF + QALGGHQNAHKRER + KR +        
Sbjct: 98  STAPEPETPQATDGEQRVFSCTYCQRKFYSSQALGGHQNAHKRERTLVKRGQRMGWGGPQ 157

Query: 80  TFDSIGS--FYHPYYSAMA---IHSLRNKALGFSIRPQSMIRKPSRSRVELGSAAAYGYR 139
              ++G   FYH ++S++A   +H   N++LG  I+  SMI KPS      G   AYG+ 
Sbjct: 158 A-TALGHPYFYHNHHSSLASLPLHGSYNRSLG--IQVHSMIHKPSSHISSTGFGNAYGHH 217

Query: 140 WWSR----EQYMAAAVAAQQEQLQSGGLLQGVNKGTGRVDLAASGLESIAMANRNASSSS 199
            WSR    +Q     ++ +       G     N G   +     G  +  + +    S+ 
Sbjct: 218 SWSRPPIDQQPAIGKLSMENHHATGAGPSGRANVGKFSITRMMMGSPADEVTSNYWWSAG 277

Query: 200 SSKIFGPDQYIINGLDLSLKL 212
           +S    P +  +  +DLSLKL
Sbjct: 278 AS--MKPKKEEMQKVDLSLKL 293

[Close]

BLAST of Lsi03G016240 vs. TAIR10
Match: AT5G10970.1 (AT5G10970.1 C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 69.7 bits (169), Expect = 2.4e-12
Identity = 50/122 (40.98%), Postives = 63/122 (51.64%), Query Frame = 1


Query: 26  ETGI-------KTKDETRVFYCKFCSRKFSNLQALGGHQNAHKRERDIAKREKAAAVRST 85
           ETG+        T  E ++F C +C R F + QALGGHQNAHKRER +AKR +  A    
Sbjct: 85  ETGVVTPSFNGSTSTEQKLFSCNYCQRTFYSSQALGGHQNAHKRERTLAKRGQRMA---- 144

Query: 86  DTFDSIGSFYHPY-YSAMAIH-SLRNKALGFSIRPQSMIRKPSRSRVELGSAAAYGYRWW 139
               S  +F HPY ++ +  H    N+ LG  I+  SM  KPS   V  G    YG   W
Sbjct: 145 ----SAAAFGHPYGFAPVPFHGQYSNRTLG--IQAHSMSHKPSSYNVYGGE---YGQINW 193

[Close]

BLAST of Lsi03G016240 vs. TAIR10
Match: AT5G25160.1 (AT5G25160.1 zinc finger protein 3)

HSP 1 Score: 67.0 bits (162), Expect = 1.6e-11
Identity = 43/109 (39.45%), Postives = 54/109 (49.54%), Query Frame = 1


Query: 31  TKDETRVFYCKFCSRKFSNLQALGGHQNAHKRERDIAKREKAAAVRSTDTFDSIGSFYHP 90
           T  E ++F C +C R F + QALGGHQNAHKRER +AKR +  A        S  +F HP
Sbjct: 54  TSTEQKLFSCNYCQRTFYSSQALGGHQNAHKRERTLAKRGQRMAA-------SASAFGHP 113

Query: 91  Y-YSAMAIHSLRNKALGFSIRPQSMIRKPSRSRVELGSAAAYGYRWWSR 139
           Y +S +  H   N      I+  S+  K S      G    YG   WSR
Sbjct: 114 YGFSPLPFHGQYNNHRSLGIQAHSISHKLSSYN---GFGGHYGQINWSR 152

[Close]

BLAST of Lsi03G016240 vs. TAIR10
Match: AT1G80730.1 (AT1G80730.1 zinc-finger protein 1)

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-10
Identity = 38/92 (41.30%), Postives = 48/92 (52.17%), Query Frame = 1


Query: 34  ETRVFYCKFCSRKFSNLQALGGHQNAHKRERDIAKREKAAAVRSTDTFDSIGSFYHPYYS 93
           + RVF C +C RKF + QALGGHQNAHKRER +AKR +   +  +    S  +F H   S
Sbjct: 64  DPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQYYKMTLSSLPSSAFAFGHGSVS 123

Query: 94  AMA------IHSLRNKALGFSIRPQSMIRKPS 120
             A      +H   N      I+  S I KPS
Sbjct: 124 RFASMASLPLHGSVNNRSTLGIQAHSTIHKPS 155

[Close]

BLAST of Lsi03G016240 vs. TAIR10
Match: AT5G01860.1 (AT5G01860.1 C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 61.2 bits (147), Expect = 8.7e-10
Identity = 37/109 (33.94%), Postives = 53/109 (48.62%), Query Frame = 1


Query: 26  ETGIKTKDETRVFYCKFCSRKFSNLQALGGHQNAHKRERDIAKREKAAAVRSTDTFDSIG 85
           E+  + + + RVF C FC ++FS  QALGGHQNAHK+ER +AKR K   +   +      
Sbjct: 55  ESSTRNEAKARVFACTFCKKEFSTSQALGGHQNAHKQERSLAKRRKEIEINYPEL----- 114

Query: 86  SFYHPYYSAMAIHSLRNKALGFSIRPQSMIRKPSRSRVELGSAAAYGYR 135
           S Y  Y  +    S  +      +R    I K ++       A  +GYR
Sbjct: 115 SIYSQYPPSGLSFSSSSSQYDLGVRYNPNIAKTTKPYPFNIFACRFGYR 158

[Close]

BLAST of Lsi03G016240 vs. TAIR10
Match: AT5G14010.1 (AT5G14010.1 C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 60.5 bits (145), Expect = 1.5e-09
Identity = 28/56 (50.00%), Postives = 33/56 (58.93%), Query Frame = 1


Query: 36 RVFYCKFCSRKFSNLQALGGHQNAHKRERDIAKREKAAAVRSTDTFDSIGSFYHPY 92
          R+F C++C RKF   QALGGHQNAHKRER  A+R       S    D   +F  PY
Sbjct: 36 RLFPCQYCPRKFYTSQALGGHQNAHKRERAAARRNLGVLANSPPILDDNNTFLRPY 91

[Close]

BLAST of Lsi03G016240 vs. NCBI nr
Match: gi|449437708|ref|XP_004136633.1| (PREDICTED: zinc finger protein 1-like [Cucumis sativus])

HSP 1 Score: 295.4 bits (755), Expect = 7.7e-77
Identity = 171/231 (74.03%), Postives = 182/231 (78.79%), Query Frame = 1


Query: 1   MSFSDNSNASDDEHC-------KVPISEQ---PETETGIKTKDETRVFYCKFCSRKFSNL 60
           MS SD    SDDEHC       KVP SEQ   PETET  KTKDETRVFYCKFCSRKFSNL
Sbjct: 1   MSSSDKPINSDDEHCNQDQDSSKVPESEQQKQPETET--KTKDETRVFYCKFCSRKFSNL 60

Query: 61  QALGGHQNAHKRERDIAKREKAAAV------RSTDTFDSIGSFYHPYYSAMAIHSLRNKA 120
           QALGGHQNAHKRERDIAKREKAAA       R+TD FDSIGSFYHPYYSAMAIH LRNK+
Sbjct: 61  QALGGHQNAHKRERDIAKREKAAAAAAAAGGRTTDAFDSIGSFYHPYYSAMAIHCLRNKS 120

Query: 121 LGFSIRPQSMIRKPSRSRVELG---SAAAYGYRWWSREQYMAAAVAAQQEQLQSGGLLQG 180
            G  IRPQS+IRKPSRSRVELG   +AAAYGYRWW REQY+AAAV AQQ+Q+QSGGLLQG
Sbjct: 121 PGIPIRPQSVIRKPSRSRVELGGGATAAAYGYRWWPREQYLAAAVVAQQQQIQSGGLLQG 180

Query: 181 VNKGTGRVDLAASGLESIAMANRNA-SSSSSSKIFGPDQYIINGLDLSLKL 212
           VN          +G  S+AMANRNA SSSSSS+IFG DQYI+NGLDLSLKL
Sbjct: 181 VN----------NGFASMAMANRNASSSSSSSQIFGADQYIVNGLDLSLKL 219

[Close]

BLAST of Lsi03G016240 vs. NCBI nr
Match: gi|659085798|ref|XP_008443609.1| (PREDICTED: uncharacterized protein LOC103487164 [Cucumis melo])

HSP 1 Score: 277.7 bits (709), Expect = 1.7e-71
Identity = 161/231 (69.70%), Postives = 171/231 (74.03%), Query Frame = 1


Query: 1   MSFSDNSNASDDEHC----KVPISEQPETETGIKTKDETRVFYCKFCSRKFSNLQALGGH 60
           MS SD SNASD E          SEQPETE   K K+ETRVFYCKFCSR FSNLQALGGH
Sbjct: 1   MSSSDKSNASDHERNYNQDSFKESEQPETEA--KAKEETRVFYCKFCSRNFSNLQALGGH 60

Query: 61  QNAHKRERDIAKREKAAAV------RSTDTFDSIGSFYHPYYSAMAIHSLRNKALGFSIR 120
           QNAHKRERDIAKREKAAA       R+TD FDSIGSFYHPYYS MAIHSLRNK+ GF IR
Sbjct: 61  QNAHKRERDIAKREKAAAAAAAAGGRTTDVFDSIGSFYHPYYSVMAIHSLRNKSPGFPIR 120

Query: 121 PQSMIRKPSRSRVEL----------GSAAAYGYRWWSREQYMAAAVAAQQEQLQSGGLLQ 180
           PQS+IRKPSRSRVEL           +AAAYGYRWW REQYMAA  AAQQ+Q+QSGGLLQ
Sbjct: 121 PQSVIRKPSRSRVELSGGGATAAAAAAAAAYGYRWWPREQYMAALAAAQQQQIQSGGLLQ 180

Query: 181 GVNKGTGRVDLAASGLESIAMANRNASSSSSSKIFGPDQYIINGLDLSLKL 212
           G N          +G ESIAM N NASSSSS +IFG DQ I+NGLDLSLKL
Sbjct: 181 GFN----------NGFESIAMENINASSSSSPQIFGADQCIVNGLDLSLKL 219

[Close]

BLAST of Lsi03G016240 vs. NCBI nr
Match: gi|296082081|emb|CBI21086.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 94.0 bits (232), Expect = 3.4e-16
Identity = 77/203 (37.93%), Postives = 100/203 (49.26%), Query Frame = 1


Query: 20  SEQPETETGIKTKDETRVFYCKFCSRKFSNLQALGGHQNAHKRERDIAKREKAAAVRSTD 79
           S Q  +E       E RVF C +C RKF + QALGGHQNAHKRER +AKR +        
Sbjct: 55  SSQTSSEIPQPADAEPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRLGAPMVA 114

Query: 80  TFDSIGS--FYHPYYSAMA---IHSLRNKALGFSIRPQSMIRKPSRSRVELGSAAAYGYR 139
              + G   F+H +YS+MA   +H   N++LG  I+  SMI KPS +    GS   YG+R
Sbjct: 115 AATAFGHPYFHHQHYSSMASLPLHGAYNRSLG--IQVHSMIHKPSLTTPSSGSGNLYGHR 174

Query: 140 WWSR---EQYMAA---AVAAQQEQLQSGGLLQGVNKGTGRVDLAASGLESIAMANRNASS 199
            WSR   +Q  A    AV    E + +G L +G   G GR D     + S A        
Sbjct: 175 SWSRPPIDQQPAVGRLAVENCHEGVTAGPLSRG---GIGRFDTVRMMINSQANEGIGGFC 234

Query: 200 SSSSKIFGPDQYIINGLDLSLKL 212
            +       +Q  +  LDLSLKL
Sbjct: 235 WTGGGRLKTNQDELQKLDLSLKL 252

[Close]

BLAST of Lsi03G016240 vs. NCBI nr
Match: gi|225430380|ref|XP_002282938.1| (PREDICTED: zinc finger protein 3-like [Vitis vinifera])

HSP 1 Score: 94.0 bits (232), Expect = 3.4e-16
Identity = 77/203 (37.93%), Postives = 100/203 (49.26%), Query Frame = 1


Query: 20  SEQPETETGIKTKDETRVFYCKFCSRKFSNLQALGGHQNAHKRERDIAKREKAAAVRSTD 79
           S Q  +E       E RVF C +C RKF + QALGGHQNAHKRER +AKR +        
Sbjct: 89  SSQTSSEIPQPADAEPRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRLGAPMVA 148

Query: 80  TFDSIGS--FYHPYYSAMA---IHSLRNKALGFSIRPQSMIRKPSRSRVELGSAAAYGYR 139
              + G   F+H +YS+MA   +H   N++LG  I+  SMI KPS +    GS   YG+R
Sbjct: 149 AATAFGHPYFHHQHYSSMASLPLHGAYNRSLG--IQVHSMIHKPSLTTPSSGSGNLYGHR 208

Query: 140 WWSR---EQYMAA---AVAAQQEQLQSGGLLQGVNKGTGRVDLAASGLESIAMANRNASS 199
            WSR   +Q  A    AV    E + +G L +G   G GR D     + S A        
Sbjct: 209 SWSRPPIDQQPAVGRLAVENCHEGVTAGPLSRG---GIGRFDTVRMMINSQANEGIGGFC 268

Query: 200 SSSSKIFGPDQYIINGLDLSLKL 212
            +       +Q  +  LDLSLKL
Sbjct: 269 WTGGGRLKTNQDELQKLDLSLKL 286

[Close]

BLAST of Lsi03G016240 vs. NCBI nr
Match: gi|590572013|ref|XP_007011752.1| (C2H2 and C2HC zinc fingers superfamily protein, putative [Theobroma cacao])

HSP 1 Score: 89.7 bits (221), Expect = 6.4e-15
Identity = 52/118 (44.07%), Postives = 68/118 (57.63%), Query Frame = 1


Query: 26  ETGIKTKDETRVFYCKFCSRKFSNLQALGGHQNAHKRERDIAKREKAAAVRSTDTFDSIG 85
           ET   T  E RVF C +C RKF + QALGGHQNAHKRER +AKR +        +  + G
Sbjct: 76  ETPQPTDAEQRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQRMGAHIAASATAFG 135

Query: 86  S--FYHPYYSAMA---IHSLRNKALGFSIRPQSMIRKPSRSRVELGSAAAYGYRWWSR 139
              F+H +YS++A   +H   N++LG  I+  SMI KPS      G  + YG+  WSR
Sbjct: 136 HPYFHHNHYSSLASLPLHGAYNRSLG--IQVHSMIHKPSHISSSTGFGSVYGHHSWSR 191

The following BLAST results are available for this feature:

BLAST of Lsi03G016240 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ZFP3_ARATH	2.8e-10	39.45	Zinc finger protein 3 OS=Arabidopsis thaliana GN=ZFP3 PE=2 SV=1	[more]
ZFP1_ARATH	2.4e-09	41.30	Zinc finger protein 1 OS=Arabidopsis thaliana GN=ZFP1 PE=2 SV=1	[more]
KNU_ARATH	2.6e-08	50.00	Zinc finger protein KNUCKLES OS=Arabidopsis thaliana GN=KNU PE=1 SV=1	[more]
ZFP4_ARATH	5.8e-08	44.16	Zinc finger protein 4 OS=Arabidopsis thaliana GN=ZFP4 PE=2 SV=2	[more]
ZFP2_ARATH	7.6e-08	54.90	Zinc finger protein 2 OS=Arabidopsis thaliana GN=ZFP2 PE=2 SV=1	[more]

BLAST of Lsi03G016240 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBM7_CUCSA	5.4e-77	74.03	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G819820 PE=4 SV=1	[more]
E5GBP2_CUCME	1.2e-71	69.70	Zinc finger protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
F6H3J5_VITVI	2.4e-16	37.93	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g05930 PE=4 SV=...	[more]
A0A061GIJ6_THECC	4.5e-15	44.07	C2H2 and C2HC zinc fingers superfamily protein, putative OS=Theobroma cacao GN=T...	[more]
A0A0D2QA46_GOSRA	2.5e-13	34.33	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G060900 PE=4 SV=1	[more]

BLAST of Lsi03G016240 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G10970.1	2.4e-12	40.98	C2H2 and C2HC zinc fingers superfamily protein	[more]
AT5G25160.1	1.6e-11	39.45	zinc finger protein 3	[more]
AT1G80730.1	1.3e-10	41.30	zinc-finger protein 1	[more]
AT5G01860.1	8.7e-10	33.94	C2H2 and C2HC zinc fingers superfamily protein	[more]
AT5G14010.1	1.5e-09	50.00	C2H2 and C2HC zinc fingers superfamily protein	[more]

BLAST of Lsi03G016240 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449437708\|ref\|XP_004136633.1\|	7.7e-77	74.03	PREDICTED: zinc finger protein 1-like [Cucumis sativus]	[more]
gi\|659085798\|ref\|XP_008443609.1\|	1.7e-71	69.70	PREDICTED: uncharacterized protein LOC103487164 [Cucumis melo]	[more]
gi\|296082081\|emb\|CBI21086.3\|	3.4e-16	37.93	unnamed protein product [Vitis vinifera]	[more]
gi\|225430380\|ref\|XP_002282938.1\|	3.4e-16	37.93	PREDICTED: zinc finger protein 3-like [Vitis vinifera]	[more]
gi\|590572013\|ref\|XP_007011752.1\|	6.4e-15	44.07	C2H2 and C2HC zinc fingers superfamily protein, putative [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR007087	Zinc finger, C2H2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G016240.1	Lsi03G016240.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007087	Zinc finger, C2H2	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 40..60 scor
IPR007087	Zinc finger, C2H2	PROFILE	PS50157	ZINC_FINGER_C2H2_2	coord: 38..65 score: 11
None	No IPR available	unknown	SSF57667	beta-beta-alpha zinc fingers	coord: 35..65 score: 4.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi03G016240	Csa3G819820	Cucumber (Chinese Long) v2	culsiB186
Lsi03G016240	CSPI03G37660	Wild cucumber (PI 183967)	cpilsiB184
Lsi03G016240	Cucsa.337640	Cucumber (Gy14) v1	cgylsiB551
Lsi03G016240	CmaCh14G005030	Cucurbita maxima (Rimu)	cmalsiB242
Lsi03G016240	CmoCh14G005080	Cucurbita moschata (Rifu)	cmolsiB230
Lsi03G016240	Cla017429	Watermelon (97103) v1	lsiwmB240
Lsi03G016240	MELO3C009744	Melon (DHL92) v3.5.1	lsimeB260
Lsi03G016240	ClCG10G016320	Watermelon (Charleston Gray)	lsiwcgB219
Lsi03G016240	MELO3C009744.2	Melon (DHL92) v3.6.1	lsimedB273
Lsi03G016240	Cla97C10G199240	Watermelon (97103) v2	lsiwmbB218
Lsi03G016240	Bhi11G002330	Wax gourd	lsiwgoB295
Lsi03G016240	Carg03493	Silver-seed gourd	carlsiB225
Lsi03G016240	CsaV3_3G040020	Cucumber (Chinese Long) v3	cuclsiB203

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi03G016240	Bottle gourd (USVL1VR-Ls)	lsilsiB073
Lsi03G016240	Cucurbita maxima (Rimu)	cmalsiB611
Lsi03G016240	Cucurbita maxima (Rimu)	cmalsiB751
Lsi03G016240	Cucurbita moschata (Rifu)	cmolsiB744
Lsi03G016240	Cucurbita moschata (Rifu)	cmolsiB749
Lsi03G016240	Cucurbita pepo (Zucchini)	cpelsiB503
Lsi03G016240	Cucurbita pepo (Zucchini)	cpelsiB711
Lsi03G016240	Cucurbita pepo (Zucchini)	cpelsiB708
Lsi03G016240	Cucumber (Gy14) v2	cgyblsiB171
Lsi03G016240	Silver-seed gourd	carlsiB142
Lsi03G016240	Silver-seed gourd	carlsiB143