Lsi03G008150 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G008150
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	SHI-related sequence 7, putative
Location	chr03 : 12302971 .. 12304271 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGGGTTGTTCTATTTAAGTGGGAAACAGGAGGAGGATGAAGAAGAAATTATGAGAGGAAGAGAACAACAATTGTTTTTGTATAGTAAAAACAATAATGAAGAGATCTATTCCAAGGGATTGGAGATTTGGCCTCAACAAAATGTGGACAATTACATTTCCTTTGGAGTTGTGGGGCCTACTAGGAAGAACTTGATCATCAATGCCTCCGATCATGAGTTTGTTTCGAGATTAGGGTTTTCGATGATGAGAGGAGGAGGAGGAGGAGGGGTGAATTGTCAAGATTGTGGGAATCAAGCTAAGAAAGATTGTTCCCATTTGAGGTGTAGGACTTGTTGTAAGAGTCGAGGGTTTCACTGCCAAACCCATGTCAAGAGTACTTGGGTTCCAGCGGCCAAGCGTCGGGAAAGACAACAACAACGTCATCAGCTTGTGCAGCATCACCACCGACAACAATTTCAAACAGATCAATCAGATCAGACCACTTCCAAAAGGCACGAAGAAAATCAACTACCACTTCCAACTCCAACTATCACTTCAGGTAATTCATCTTTAACAAGTTTAAGCTGATGGGTTATGGTAAATTTAATTTTTTTTTTTTTAAGTTCGAACAAACATGGGGTGGGAGGGTGTGGGGATCGATGATTTGAATCTCGAACTCGATGTTGTAATGGCTTAGATTGGTGGAGATGATTGCTTTTTGTGTGTTTCTTGATCTAATCAATATGGCTTGGAAATTAGGGTTAGAAGTTGCACATTTTCCAGCTGAATTCAATTCCCCAGCTGTTTTTCGGTGTGTCAAAGTCAGTGCCATTGACAATGTAGAAGAACAATTAGCATATCAAACATCTGTGAACATTGGTGGGCATATGTTCAAAGGCATTCTTTATGACCACGGTCCCGAAACCTCTGGCGGAGAGAGCTCGTACTGCCATGACGGAGAAGACGATGGTCAAGCACTCGATCTAGTGATCGGAGCATCCAACGGCACCGGGAGAGTTAACCAATCATCATCTGCCCCATTTGTGGAGTCTTCACTATATCCCATCCCAATCAACACATTCAACACCGGTACGCAATTTTTTCCATCCACAAGAACATAAGAAAAATGGGGCTCATAAACTAGAAAAAAAAAAGAAAAAAAAAAAGCTTCCTTGATTTTATGATGTGTCGGATGAAGACATTGGAATAAAACAAAACAAGGTGATGCTATTTTAATTTAATTTACGTATGAGTATATGATAATCGACCCTACATTTTATTTGCATTCCCATATCATAAATTGGTAACGTATTGTT

mRNA sequence

ATGAAGGGGTTGTTCTATTTAAGTGGGAAACAGGAGGAGGATGAAGAAGAAATTATGAGAGGAAGAGAACAACAATTGTTTTTGTATAGTAAAAACAATAATGAAGAGATCTATTCCAAGGGATTGGAGATTTGGCCTCAACAAAATGTGGACAATTACATTTCCTTTGGAGTTGTGGGGCCTACTAGGAAGAACTTGATCATCAATGCCTCCGATCATGAGTTTGTTTCGAGATTAGGGTTTTCGATGATGAGAGGAGGAGGAGGAGGAGGGGTGAATTGTCAAGATTGTGGGAATCAAGCTAAGAAAGATTGTTCCCATTTGAGGTGTAGGACTTGTTGGTTAGAAGTTGCACATTTTCCAGCTGAATTCAATTCCCCAGCTGTTTTTCGGTGTGTCAAAGTCAGTGCCATTGACAATGTAGAAGAACAATTAGCATATCAAACATCTGTGAACATTGGTGGGCATATGTTCAAAGGCATTCTTTATGACCACGGTCCCGAAACCTCTGGCGGAGAGAGCTCGTACTGCCATGACGGAGAAGACGATGGTCAAGCACTCGATCTAGTGATCGGAGCATCCAACGGCACCGGGAGAGTTAACCAATCATCATCTGCCCCATTTGTGGAGTCTTCACTATATCCCATCCCAATCAACACATTCAACACCGGTACGCAATTTTTTCCATCCACAAGAACATAAGAAAAATGGGGCTCATAAACTAGAAAAAAAAAAGAAAAAAAAAAAGCTTCCTTGATTTTATGATGTGTCGGATGAAGACATTGGAATAAAACAAAACAAGGTGATGCTATTTTAATTTAATTTACGTATGAGTATATGATAATCGACCCTACATTTTATTTGCATTCCCATATCATAAATTGGTAACGTATTGTT

Coding sequence (CDS)

ATGAAGGGGTTGTTCTATTTAAGTGGGAAACAGGAGGAGGATGAAGAAGAAATTATGAGAGGAAGAGAACAACAATTGTTTTTGTATAGTAAAAACAATAATGAAGAGATCTATTCCAAGGGATTGGAGATTTGGCCTCAACAAAATGTGGACAATTACATTTCCTTTGGAGTTGTGGGGCCTACTAGGAAGAACTTGATCATCAATGCCTCCGATCATGAGTTTGTTTCGAGATTAGGGTTTTCGATGATGAGAGGAGGAGGAGGAGGAGGGGTGAATTGTCAAGATTGTGGGAATCAAGCTAAGAAAGATTGTTCCCATTTGAGGTGTAGGACTTGTTGGTTAGAAGTTGCACATTTTCCAGCTGAATTCAATTCCCCAGCTGTTTTTCGGTGTGTCAAAGTCAGTGCCATTGACAATGTAGAAGAACAATTAGCATATCAAACATCTGTGAACATTGGTGGGCATATGTTCAAAGGCATTCTTTATGACCACGGTCCCGAAACCTCTGGCGGAGAGAGCTCGTACTGCCATGACGGAGAAGACGATGGTCAAGCACTCGATCTAGTGATCGGAGCATCCAACGGCACCGGGAGAGTTAACCAATCATCATCTGCCCCATTTGTGGAGTCTTCACTATATCCCATCCCAATCAACACATTCAACACCGGTACGCAATTTTTTCCATCCACAAGAACATAA

Protein sequence

MKGLFYLSGKQEEDEEEIMRGREQQLFLYSKNNNEEIYSKGLEIWPQQNVDNYISFGVVGPTRKNLIINASDHEFVSRLGFSMMRGGGGGGVNCQDCGNQAKKDCSHLRCRTCWLEVAHFPAEFNSPAVFRCVKVSAIDNVEEQLAYQTSVNIGGHMFKGILYDHGPETSGGESSYCHDGEDDGQALDLVIGASNGTGRVNQSSSAPFVESSLYPIPINTFNTGTQFFPSTRT

Homology

[Close]

BLAST of Lsi03G008150 vs. Swiss-Prot
Match: SRS1_ARATH (Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana GN=SRS1 PE=1 SV=2)

HSP 1 Score: 110.2 bits (274), Expect = 3.2e-23
Identity = 61/138 (44.20%), Postives = 84/138 (60.87%), Query Frame = 1


Query: 115 LEVAHFPAEFNSPAVFRCVKVSAIDNVEEQLAYQTSVNIGGHMFKGILYDHGPETSGG-- 174
           LEV +FPAE +S AVFRCV+VS++++ EE+ AYQT+V+IGGH+FKGILYD GP +SGG  
Sbjct: 233 LEVGNFPAEVSSSAVFRCVRVSSVEDGEEEFAYQTAVSIGGHIFKGILYDLGPGSSGGGG 292

Query: 175 ----ESSYCHDGEDDGQALDLVIGAS-------------NGTGRVNQSSSAPFVESSLYP 234
                +     G    Q L+L+   S              G G  + +++     ++LYP
Sbjct: 293 YNVVAAGESSSGGGGAQQLNLITAGSVTVATASSSTPNLGGIGSSSAAAATYIDPAALYP 352

[Close]

BLAST of Lsi03G008150 vs. Swiss-Prot
Match: SHI_ARATH (Protein SHORT INTERNODES OS=Arabidopsis thaliana GN=SHI PE=1 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.5e-20
Identity = 59/126 (46.83%), Postives = 78/126 (61.90%), Query Frame = 1


Query: 112 TCWLEVAHFPAEFNSPAVFRCVKVSAIDNVEEQLAYQTSVNIGGHMFKGILYDHGP---E 171
           T  LEV +FP E +S AVFRCV+VS++D+ EE+ AY+T+V+IGGH+FKG+LYD GP    
Sbjct: 206 TSGLEVGNFPPEVSSSAVFRCVRVSSVDDEEEEYAYKTAVSIGGHVFKGVLYDQGPAERS 265

Query: 172 TSGGESSYCHDGEDDGQALDLVIGASNGTGRVNQSSSAPFVESSL-YPIPINTFNTGTQF 231
           +SGG S   +       A       S   G V  +S      +SL YP PINTF TGT F
Sbjct: 266 SSGGGSQPLNLITAGPSASSSSPNVSCNNGVVGSTSDHYIDPASLNYPTPINTFMTGTHF 325

Query: 232 FPSTRT 234
           F ++R+
Sbjct: 326 FSNSRS 331

[Close]

BLAST of Lsi03G008150 vs. Swiss-Prot
Match: SRS3_ARATH (Protein SHI RELATED SEQUENCE 3 OS=Arabidopsis thaliana GN=SRS3 PE=2 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.1e-19
Identity = 52/118 (44.07%), Postives = 64/118 (54.24%), Query Frame = 1


Query: 91  GVNCQDCGNQAKKDCSHLRCRTC---------------WLEV------------------ 150
           G  C+DCGNQAKKDC ++RCRTC               W+                    
Sbjct: 6   GRKCEDCGNQAKKDCVYMRCRTCCKSKAFHCQTHIKSTWVPAYRRSHHKHQSQPLSTSIP 65

Query: 151 ---------AHFPAEFNSPAVFRCVKVSAIDNVEEQLAYQTSVNIGGHMFKGILYDHG 167
                     HFPAE +S A FRCVKVS+ID+ +EQ AYQT+VNIGGH+F+GIL+D G
Sbjct: 66  KGVQIHTTPGHFPAELSSLADFRCVKVSSIDDGKEQYAYQTTVNIGGHVFRGILHDQG 123

[Close]

BLAST of Lsi03G008150 vs. Swiss-Prot
Match: SRS7_ARATH (Protein SHI RELATED SEQUENCE 7 OS=Arabidopsis thaliana GN=SRS7 PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.5e-17
Identity = 61/169 (36.09%), Postives = 88/169 (52.07%), Query Frame = 1


Query: 85  RGGGGGGVNCQD------CGNQAKKDCSHL-RCRTCWLEVAHFPAEFNSPAVFRCVKVSA 144
           RGGG    + ++      CG  +   C+ +    +  LE +H P E +SPAVFRC++VS+
Sbjct: 181 RGGGDDDDDDKEDEKNDSCGGGSALACTRVVNASSSGLETSHLPPEISSPAVFRCMRVSS 240

Query: 145 IDNVEEQLAYQTSVNIGGHMFKGILYDHGPETS--------GGESSYCH-----DGEDDG 204
           ID+ +E+ AYQT+V+IGGH+FKGILYD GP +          GE+S+ H     D     
Sbjct: 241 IDDEDEEYAYQTAVSIGGHVFKGILYDQGPSSDHHRYSSSLNGETSHQHHLNLMDSTPSA 300

Query: 205 QALDLVIGASNGTGRVNQSSSAPFVESSLYPIPINTFNT-GTQFFPSTR 233
              + V   +   G ++ SS    V +     P N F   GT FF S+R
Sbjct: 301 ATTNAVTAVNTNNGSIDPSSLYTAVAT-----PFNAFVAGGTPFFASSR 344

[Close]

BLAST of Lsi03G008150 vs. Swiss-Prot
Match: SRS5_ARATH (Protein SHI RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=SRS5 PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 9.9e-17
Identity = 55/131 (41.98%), Postives = 71/131 (54.20%), Query Frame = 1


Query: 115 LEVA-HFPAEFNSPAVFRCVKVSAIDNVEEQ--LAYQTSVNIGGHMFKGILYDHGPETSG 174
           LEV+ H P E NSPA+FRCV+VS+I+  E+    AYQT+VNIGGH+FKGILYD GPE   
Sbjct: 228 LEVSQHLPPEVNSPAIFRCVRVSSIEEDEDDQAYAYQTAVNIGGHIFKGILYDQGPE--- 287

Query: 175 GESSYCHDGEDDGQALDLVIGASNGTG---------RVNQSSSAPFVESSLYPIPINTFN 234
                      D   L+L+   +  T            N ++      SSLYP  +N+F 
Sbjct: 288 ---------HQDNHHLNLLASTATTTNVEETATKTVTGNNNNGLMLDPSSLYPAQLNSFI 346

[Close]

BLAST of Lsi03G008150 vs. TrEMBL
Match: A0A0A0K1X2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G051450 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 1.9e-51
Identity = 105/119 (88.24%), Postives = 109/119 (91.60%), Query Frame = 1


Query: 1   MKGLFYLSGKQEEDEEEIMR-GREQQLFLYS---KNNNEEIYSKGLEIWPQQNVDNYISF 60
           M+GL YL GKQEEDEEE +R GREQQLFLYS    NNNEEIYSKGLEIWPQQNV+NYISF
Sbjct: 1   MRGLLYLGGKQEEDEEESLRSGREQQLFLYSTNNNNNNEEIYSKGLEIWPQQNVENYISF 60

Query: 61  GVVGPTRKNLIINASDHEFVSRLGFSMMRG--GGGGGVNCQDCGNQAKKDCSHLRCRTC 114
           GVVGPTRKNLIINASDHEFVSRLGFSMMRG  GGGGG+NCQDCGNQAKKDCSHLRCRTC
Sbjct: 61  GVVGPTRKNLIINASDHEFVSRLGFSMMRGGSGGGGGMNCQDCGNQAKKDCSHLRCRTC 119

[Close]

BLAST of Lsi03G008150 vs. TrEMBL
Match: A0A0A0LDI9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G865400 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 3.4e-40
Identity = 92/122 (75.41%), Postives = 100/122 (81.97%), Query Frame = 1


Query: 112 TCWLEVAHFPAEFNSPAVFRCVKVSAIDNVEEQLAYQTSVNIGGHMFKGILYDHGPETSG 171
           T  LE  +F  EFNS AVFRCVKVSAIDNVEEQLAYQT+VNIGGHMFKGILYD GPE S 
Sbjct: 183 TSGLEHGNFQGEFNSSAVFRCVKVSAIDNVEEQLAYQTAVNIGGHMFKGILYDQGPEYSQ 242

Query: 172 GESSYCHDGEDDGQALDLVIGASNGTGRVNQSSSAPFVESSLYPIPINTFNTGTQFFPST 231
             S+   DGED G+ LDLVIGASNG+GRVN + S PFVESSLYPIPIN+FN G QFFPS+
Sbjct: 243 NLST-GGDGEDGGEGLDLVIGASNGSGRVN-NQSTPFVESSLYPIPINSFNNGMQFFPSS 302

Query: 232 RT 234
           RT
Sbjct: 303 RT 302

[Close]

BLAST of Lsi03G008150 vs. TrEMBL
Match: A0A0D2RJ51_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G110600 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 2.2e-39
Identity = 106/217 (48.85%), Postives = 126/217 (58.06%), Query Frame = 1


Query: 1   MKGLFYLSGKQEEDEEEIMRGREQQLFLYSKNNNEEIYSKGLEIWP-------QQNVDNY 60
           M G FYL G+Q+ED+EE        L LY    NEEI +KG EIWP       QQNV+N 
Sbjct: 1   MAGFFYLGGRQDEDKEE-------NLNLY---RNEEICNKGFEIWPHYNYYQQQQNVNNQ 60

Query: 61  ISFGVVGPTRKNLIINASDHEFVSRLGFSMMRGGGGGGVNCQDCGNQAKKDCSHLRCR-- 120
            SFG  GP+R+   +N SD      +GF+ MR GG   +NCQDCGNQAKKDC+HLRCR  
Sbjct: 61  -SFGA-GPSRRTSGLNLSDEWSSRSVGFTDMRQGG---INCQDCGNQAKKDCAHLRCRTC 120

Query: 121 -------------TCW--------------------------LEVAHFPAEFNSPAVFRC 169
                        + W                          LE+A FP+E NSPAVFRC
Sbjct: 121 CKSHGFQCQTHVKSTWVPAARRREKQPQNPQQQQQFRGENQGLELAQFPSEVNSPAVFRC 180

[Close]

BLAST of Lsi03G008150 vs. TrEMBL
Match: A0A0A0LNQ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G364580 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 3.5e-29
Identity = 71/140 (50.71%), Postives = 93/140 (66.43%), Query Frame = 1


Query: 105 CSHLRCRTCWLEVAHFPAEFNSPAVFRCVKVSAIDNVEEQLAYQTSVNIGGHMFKGILYD 164
           C  L   T  LE+A FP+E NSPAVFRCVKVSA+D+ +E+ AYQT+VNIGGH+FKGILYD
Sbjct: 208 CPRLPSITSGLELAQFPSEVNSPAVFRCVKVSAMDDADEEFAYQTAVNIGGHVFKGILYD 267

Query: 165 HGPE---TSGGESSYCHDGEDDGQALDLVIG--------ASNGTGRVNQSSSAPFVESSL 224
            GPE   T+ GESS  H G+     L+L+ G        A++       +S+AP ++ S+
Sbjct: 268 QGPELRYTAAGESSSGHGGDGSTHPLNLIAGPTSTSTSAATSTNPAAASASTAPLLDPSI 327

Query: 225 YPIPINTFNTGTQFFPSTRT 234
           YP P+N F  GTQFFP +R+
Sbjct: 328 YPAPLNAFMAGTQFFPPSRS 347

[Close]

BLAST of Lsi03G008150 vs. TrEMBL
Match: E6NU70_JATCU (JHL18I08.14 protein OS=Jatropha curcas GN=JHL18I08.14 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 4.6e-29
Identity = 74/135 (54.81%), Postives = 90/135 (66.67%), Query Frame = 1


Query: 105 CSHLRCRTCWLEVAHFPAEFNSPAVFRCVKVSAIDNVEEQLAYQTSVNIGGHMFKGILYD 164
           C+ L   T  LEVAHFP E NSPAVFRCVKVSA+D+ +EQ AYQT+VNIGGHMF+G+LYD
Sbjct: 186 CTRLGTTTSGLEVAHFPPEVNSPAVFRCVKVSAMDDADEQFAYQTAVNIGGHMFRGLLYD 245

Query: 165 HGPE---TSGGESSYCHDGEDDGQALDLVIGASNGTGRV--NQSSSAPFVE-SSLYPIPI 224
            GP+   TSGGESS         Q L+L+  A+  T     NQ  +   ++ SSLYP P+
Sbjct: 246 QGPDSRYTSGGESS-----SGGAQQLNLITAATTSTEATPSNQQGTGALIDPSSLYPAPL 305

Query: 225 NTFNTGTQFFPSTRT 234
           N F  GTQFFP  R+
Sbjct: 306 NAFIAGTQFFPPPRS 315

[Close]

BLAST of Lsi03G008150 vs. TAIR10
Match: AT3G51060.1 (AT3G51060.1 Lateral root primordium (LRP) protein-related)

HSP 1 Score: 110.2 bits (274), Expect = 1.8e-24
Identity = 61/138 (44.20%), Postives = 84/138 (60.87%), Query Frame = 1


Query: 115 LEVAHFPAEFNSPAVFRCVKVSAIDNVEEQLAYQTSVNIGGHMFKGILYDHGPETSGG-- 174
           LEV +FPAE +S AVFRCV+VS++++ EE+ AYQT+V+IGGH+FKGILYD GP +SGG  
Sbjct: 233 LEVGNFPAEVSSSAVFRCVRVSSVEDGEEEFAYQTAVSIGGHIFKGILYDLGPGSSGGGG 292

Query: 175 ----ESSYCHDGEDDGQALDLVIGAS-------------NGTGRVNQSSSAPFVESSLYP 234
                +     G    Q L+L+   S              G G  + +++     ++LYP
Sbjct: 293 YNVVAAGESSSGGGGAQQLNLITAGSVTVATASSSTPNLGGIGSSSAAAATYIDPAALYP 352

[Close]

BLAST of Lsi03G008150 vs. TAIR10
Match: AT5G66350.1 (AT5G66350.1 Lateral root primordium (LRP) protein-related)

HSP 1 Score: 100.5 bits (249), Expect = 1.4e-21
Identity = 59/126 (46.83%), Postives = 78/126 (61.90%), Query Frame = 1


Query: 112 TCWLEVAHFPAEFNSPAVFRCVKVSAIDNVEEQLAYQTSVNIGGHMFKGILYDHGP---E 171
           T  LEV +FP E +S AVFRCV+VS++D+ EE+ AY+T+V+IGGH+FKG+LYD GP    
Sbjct: 206 TSGLEVGNFPPEVSSSAVFRCVRVSSVDDEEEEYAYKTAVSIGGHVFKGVLYDQGPAERS 265

Query: 172 TSGGESSYCHDGEDDGQALDLVIGASNGTGRVNQSSSAPFVESSL-YPIPINTFNTGTQF 231
           +SGG S   +       A       S   G V  +S      +SL YP PINTF TGT F
Sbjct: 266 SSGGGSQPLNLITAGPSASSSSPNVSCNNGVVGSTSDHYIDPASLNYPTPINTFMTGTHF 325

Query: 232 FPSTRT 234
           F ++R+
Sbjct: 326 FSNSRS 331

[Close]

BLAST of Lsi03G008150 vs. TAIR10
Match: AT2G21400.1 (AT2G21400.1 SHI-related sequence3)

HSP 1 Score: 97.4 bits (241), Expect = 1.2e-20
Identity = 52/118 (44.07%), Postives = 64/118 (54.24%), Query Frame = 1


Query: 91  GVNCQDCGNQAKKDCSHLRCRTC---------------WLEV------------------ 150
           G  C+DCGNQAKKDC ++RCRTC               W+                    
Sbjct: 6   GRKCEDCGNQAKKDCVYMRCRTCCKSKAFHCQTHIKSTWVPAYRRSHHKHQSQPLSTSIP 65

Query: 151 ---------AHFPAEFNSPAVFRCVKVSAIDNVEEQLAYQTSVNIGGHMFKGILYDHG 167
                     HFPAE +S A FRCVKVS+ID+ +EQ AYQT+VNIGGH+F+GIL+D G
Sbjct: 66  KGVQIHTTPGHFPAELSSLADFRCVKVSSIDDGKEQYAYQTTVNIGGHVFRGILHDQG 123

[Close]

BLAST of Lsi03G008150 vs. TAIR10
Match: AT1G19790.1 (AT1G19790.1 SHI-related sequence 7)

HSP 1 Score: 91.3 bits (225), Expect = 8.6e-19
Identity = 61/169 (36.09%), Postives = 88/169 (52.07%), Query Frame = 1


Query: 85  RGGGGGGVNCQD------CGNQAKKDCSHL-RCRTCWLEVAHFPAEFNSPAVFRCVKVSA 144
           RGGG    + ++      CG  +   C+ +    +  LE +H P E +SPAVFRC++VS+
Sbjct: 181 RGGGDDDDDDKEDEKNDSCGGGSALACTRVVNASSSGLETSHLPPEISSPAVFRCMRVSS 240

Query: 145 IDNVEEQLAYQTSVNIGGHMFKGILYDHGPETS--------GGESSYCH-----DGEDDG 204
           ID+ +E+ AYQT+V+IGGH+FKGILYD GP +          GE+S+ H     D     
Sbjct: 241 IDDEDEEYAYQTAVSIGGHVFKGILYDQGPSSDHHRYSSSLNGETSHQHHLNLMDSTPSA 300

Query: 205 QALDLVIGASNGTGRVNQSSSAPFVESSLYPIPINTFNT-GTQFFPSTR 233
              + V   +   G ++ SS    V +     P N F   GT FF S+R
Sbjct: 301 ATTNAVTAVNTNNGSIDPSSLYTAVAT-----PFNAFVAGGTPFFASSR 344

[Close]

BLAST of Lsi03G008150 vs. TAIR10
Match: AT1G75520.1 (AT1G75520.1 SHI-related sequence 5)

HSP 1 Score: 88.6 bits (218), Expect = 5.6e-18
Identity = 55/131 (41.98%), Postives = 71/131 (54.20%), Query Frame = 1


Query: 115 LEVA-HFPAEFNSPAVFRCVKVSAIDNVEEQ--LAYQTSVNIGGHMFKGILYDHGPETSG 174
           LEV+ H P E NSPA+FRCV+VS+I+  E+    AYQT+VNIGGH+FKGILYD GPE   
Sbjct: 228 LEVSQHLPPEVNSPAIFRCVRVSSIEEDEDDQAYAYQTAVNIGGHIFKGILYDQGPE--- 287

Query: 175 GESSYCHDGEDDGQALDLVIGASNGTG---------RVNQSSSAPFVESSLYPIPINTFN 234
                      D   L+L+   +  T            N ++      SSLYP  +N+F 
Sbjct: 288 ---------HQDNHHLNLLASTATTTNVEETATKTVTGNNNNGLMLDPSSLYPAQLNSFI 346

[Close]

BLAST of Lsi03G008150 vs. NCBI nr
Match: gi|449438526|ref|XP_004137039.1| (PREDICTED: protein SHI RELATED SEQUENCE 1-like [Cucumis sativus])

HSP 1 Score: 210.7 bits (535), Expect = 2.8e-51
Identity = 105/119 (88.24%), Postives = 109/119 (91.60%), Query Frame = 1


Query: 1   MKGLFYLSGKQEEDEEEIMR-GREQQLFLYS---KNNNEEIYSKGLEIWPQQNVDNYISF 60
           M+GL YL GKQEEDEEE +R GREQQLFLYS    NNNEEIYSKGLEIWPQQNV+NYISF
Sbjct: 1   MRGLLYLGGKQEEDEEESLRSGREQQLFLYSTNNNNNNEEIYSKGLEIWPQQNVENYISF 60

Query: 61  GVVGPTRKNLIINASDHEFVSRLGFSMMRG--GGGGGVNCQDCGNQAKKDCSHLRCRTC 114
           GVVGPTRKNLIINASDHEFVSRLGFSMMRG  GGGGG+NCQDCGNQAKKDCSHLRCRTC
Sbjct: 61  GVVGPTRKNLIINASDHEFVSRLGFSMMRGGSGGGGGMNCQDCGNQAKKDCSHLRCRTC 119

[Close]

BLAST of Lsi03G008150 vs. NCBI nr
Match: gi|659110505|ref|XP_008455259.1| (PREDICTED: protein SHI RELATED SEQUENCE 1 [Cucumis melo])

HSP 1 Score: 208.4 bits (529), Expect = 1.4e-50
Identity = 104/120 (86.67%), Postives = 109/120 (90.83%), Query Frame = 1


Query: 1   MKGLFYLSGKQEEDEEEIMR-GREQQLFLYSK---NNNEEIYSKGLEIWPQQNVDNYISF 60
           M+GL YL GKQEEDEEEI+R GREQQLFLYS    +NNEEIYSKGLEIWPQQNV+NYISF
Sbjct: 1   MRGLLYLGGKQEEDEEEILRSGREQQLFLYSSTNNHNNEEIYSKGLEIWPQQNVENYISF 60

Query: 61  GVVGPTRKNLIINASDHEFVSRLGFSMMR---GGGGGGVNCQDCGNQAKKDCSHLRCRTC 114
           GVVGPTRKNLIINASDHE VSRLGFSMMR   GGGGGG+NCQDCGNQAKKDCSHLRCRTC
Sbjct: 61  GVVGPTRKNLIINASDHELVSRLGFSMMRGGGGGGGGGMNCQDCGNQAKKDCSHLRCRTC 120

[Close]

BLAST of Lsi03G008150 vs. NCBI nr
Match: gi|659133021|ref|XP_008466512.1| (PREDICTED: protein SHI RELATED SEQUENCE 3-like [Cucumis melo])

HSP 1 Score: 174.1 bits (440), Expect = 2.9e-40
Identity = 91/122 (74.59%), Postives = 100/122 (81.97%), Query Frame = 1


Query: 112 TCWLEVAHFPAEFNSPAVFRCVKVSAIDNVEEQLAYQTSVNIGGHMFKGILYDHGPETSG 171
           T  LE+ +F  EFNS AVFRCVKVSAIDNVEEQLAYQT+VNIGGHMFKGILYD GPE + 
Sbjct: 187 TSGLELGNFQGEFNSSAVFRCVKVSAIDNVEEQLAYQTAVNIGGHMFKGILYDQGPENNQ 246

Query: 172 GESSYCHDGEDDGQALDLVIGASNGTGRVNQSSSAPFVESSLYPIPINTFNTGTQFFPST 231
              S   DGE+DGQ LDLVIGASN +GRVN + S PFVESSLYPIPIN+FN  TQFFPS+
Sbjct: 247 INLSSGGDGENDGQGLDLVIGASNCSGRVN-NQSTPFVESSLYPIPINSFNNCTQFFPSS 306

Query: 232 RT 234
           RT
Sbjct: 307 RT 307

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BLAST of Lsi03G008150 vs. NCBI nr
Match: gi|778686710|ref|XP_004147842.2| (PREDICTED: protein SHI RELATED SEQUENCE 1-like [Cucumis sativus])

HSP 1 Score: 173.3 bits (438), Expect = 4.9e-40
Identity = 92/122 (75.41%), Postives = 100/122 (81.97%), Query Frame = 1


Query: 112 TCWLEVAHFPAEFNSPAVFRCVKVSAIDNVEEQLAYQTSVNIGGHMFKGILYDHGPETSG 171
           T  LE  +F  EFNS AVFRCVKVSAIDNVEEQLAYQT+VNIGGHMFKGILYD GPE S 
Sbjct: 183 TSGLEHGNFQGEFNSSAVFRCVKVSAIDNVEEQLAYQTAVNIGGHMFKGILYDQGPEYSQ 242

Query: 172 GESSYCHDGEDDGQALDLVIGASNGTGRVNQSSSAPFVESSLYPIPINTFNTGTQFFPST 231
             S+   DGED G+ LDLVIGASNG+GRVN + S PFVESSLYPIPIN+FN G QFFPS+
Sbjct: 243 NLST-GGDGEDGGEGLDLVIGASNGSGRVN-NQSTPFVESSLYPIPINSFNNGMQFFPSS 302

Query: 232 RT 234
           RT
Sbjct: 303 RT 302

[Close]

BLAST of Lsi03G008150 vs. NCBI nr
Match: gi|823156364|ref|XP_012478110.1| (PREDICTED: protein SHI RELATED SEQUENCE 5-like isoform X1 [Gossypium raimondii])

HSP 1 Score: 170.6 bits (431), Expect = 3.2e-39
Identity = 106/217 (48.85%), Postives = 126/217 (58.06%), Query Frame = 1


Query: 1   MKGLFYLSGKQEEDEEEIMRGREQQLFLYSKNNNEEIYSKGLEIWP-------QQNVDNY 60
           M G FYL G+Q+ED+EE        L LY    NEEI +KG EIWP       QQNV+N 
Sbjct: 1   MAGFFYLGGRQDEDKEE-------NLNLY---RNEEICNKGFEIWPHYNYYQQQQNVNNQ 60

Query: 61  ISFGVVGPTRKNLIINASDHEFVSRLGFSMMRGGGGGGVNCQDCGNQAKKDCSHLRCR-- 120
            SFG  GP+R+   +N SD      +GF+ MR GG   +NCQDCGNQAKKDC+HLRCR  
Sbjct: 61  -SFGA-GPSRRTSGLNLSDEWSSRSVGFTDMRQGG---INCQDCGNQAKKDCAHLRCRTC 120

Query: 121 -------------TCW--------------------------LEVAHFPAEFNSPAVFRC 169
                        + W                          LE+A FP+E NSPAVFRC
Sbjct: 121 CKSHGFQCQTHVKSTWVPAARRREKQPQNPQQQQQFRGENQGLELAQFPSEVNSPAVFRC 180

The following BLAST results are available for this feature:

BLAST of Lsi03G008150 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SRS1_ARATH	3.2e-23	44.20	Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana GN=SRS1 PE=1 SV=2	[more]
SHI_ARATH	2.5e-20	46.83	Protein SHORT INTERNODES OS=Arabidopsis thaliana GN=SHI PE=1 SV=1	[more]
SRS3_ARATH	2.1e-19	44.07	Protein SHI RELATED SEQUENCE 3 OS=Arabidopsis thaliana GN=SRS3 PE=2 SV=1	[more]
SRS7_ARATH	1.5e-17	36.09	Protein SHI RELATED SEQUENCE 7 OS=Arabidopsis thaliana GN=SRS7 PE=2 SV=1	[more]
SRS5_ARATH	9.9e-17	41.98	Protein SHI RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=SRS5 PE=2 SV=1	[more]

BLAST of Lsi03G008150 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K1X2_CUCSA	1.9e-51	88.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G051450 PE=4 SV=1	[more]
A0A0A0LDI9_CUCSA	3.4e-40	75.41	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G865400 PE=4 SV=1	[more]
A0A0D2RJ51_GOSRA	2.2e-39	48.85	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G110600 PE=4 SV=1	[more]
A0A0A0LNQ5_CUCSA	3.5e-29	50.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G364580 PE=4 SV=1	[more]
E6NU70_JATCU	4.6e-29	54.81	JHL18I08.14 protein OS=Jatropha curcas GN=JHL18I08.14 PE=4 SV=1	[more]

BLAST of Lsi03G008150 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G51060.1	1.8e-24	44.20	Lateral root primordium (LRP) protein-related	[more]
AT5G66350.1	1.4e-21	46.83	Lateral root primordium (LRP) protein-related	[more]
AT2G21400.1	1.2e-20	44.07	SHI-related sequence3	[more]
AT1G19790.1	8.6e-19	36.09	SHI-related sequence 7	[more]
AT1G75520.1	5.6e-18	41.98	SHI-related sequence 5	[more]

BLAST of Lsi03G008150 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449438526\|ref\|XP_004137039.1\|	2.8e-51	88.24	PREDICTED: protein SHI RELATED SEQUENCE 1-like [Cucumis sativus]	[more]
gi\|659110505\|ref\|XP_008455259.1\|	1.4e-50	86.67	PREDICTED: protein SHI RELATED SEQUENCE 1 [Cucumis melo]	[more]
gi\|659133021\|ref\|XP_008466512.1\|	2.9e-40	74.59	PREDICTED: protein SHI RELATED SEQUENCE 3-like [Cucumis melo]	[more]
gi\|778686710\|ref\|XP_004147842.2\|	4.9e-40	75.41	PREDICTED: protein SHI RELATED SEQUENCE 1-like [Cucumis sativus]	[more]
gi\|823156364\|ref\|XP_012478110.1\|	3.2e-39	48.85	PREDICTED: protein SHI RELATED SEQUENCE 5-like isoform X1 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007818	SHI
IPR006511	SHI_C

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G008150.1	Lsi03G008150.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006511	Lateral Root Primordium type 1, C-terminal	TIGRFAMs	TIGR01624	TIGR01624	coord: 119..167 score: 3.5
IPR007818	Protein of unknown function DUF702	PFAM	PF05142	DUF702	coord: 91..113 score: 2.3E-8coord: 118..168 score: 1.0
None	No IPR available	PANTHER	PTHR31604	FAMILY NOT NAMED	coord: 1..233 score: 1.2
None	No IPR available	PANTHER	PTHR31604:SF6	SUBFAMILY NOT NAMED	coord: 1..233 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi03G008150	Csa7G051450	Cucumber (Chinese Long) v2	culsiB522
Lsi03G008150	CSPI07G05110	Wild cucumber (PI 183967)	cpilsiB536
Lsi03G008150	Cucsa.345910	Cucumber (Gy14) v1	cgylsiB560
Lsi03G008150	CmaCh19G002830	Cucurbita maxima (Rimu)	cmalsiB482
Lsi03G008150	CmoCh19G003110	Cucurbita moschata (Rifu)	cmolsiB466
Lsi03G008150	Cla009422	Watermelon (97103) v1	lsiwmB237
Lsi03G008150	MELO3C018686	Melon (DHL92) v3.5.1	lsimeB247
Lsi03G008150	ClCG09G013590	Watermelon (Charleston Gray)	lsiwcgB211
Lsi03G008150	MELO3C018686.2	Melon (DHL92) v3.6.1	lsimedB260
Lsi03G008150	Cla97C09G176200	Watermelon (97103) v2	lsiwmbB246
Lsi03G008150	Cp4.1LG15g02550	Cucurbita pepo (Zucchini)	cpelsiB206
Lsi03G008150	CsGy7G004670	Cucumber (Gy14) v2	cgyblsiB489
Lsi03G008150	Carg24585	Silver-seed gourd	carlsiB590
Lsi03G008150	CsaV3_7G006060	Cucumber (Chinese Long) v3	cuclsiB555

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi03G008150	Wax gourd	lsiwgoB320
Lsi03G008150	Cucurbita maxima (Rimu)	cmalsiB117
Lsi03G008150	Cucurbita moschata (Rifu)	cmolsiB104
Lsi03G008150	Cucurbita pepo (Zucchini)	cpelsiB544
Lsi03G008150	Cucumber (Gy14) v2	cgyblsiB411
Lsi03G008150	Silver-seed gourd	carlsiB674