Lsi03G005500 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi03G005500
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Singapore isolate B (sub-type 7) whole genome shotgun sequence assembly, scaffold_0
Location	chr03 : 6675161 .. 6678701 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGATAAGATTAGTCACTGTCAGGAGAAAAAACACTCCAAAACAAAGAAGATTCCGATCATCTTAGAAACTGCTTTTGGTTTGGCCCCCACACGATAAGCTTCAAACTCCTCGATCTCTTCATTTACAGAACAATCGTCATTGCTTGTATCAATGCGACGACGATCTTCCTTTGCTGCTTCAATCGGTTGCTCCAGTTTACCAACCACGCTCTTTTAGGTATCCCACTCTGTTCCCTTTTGCCTATTTGATTTCGAGAAAAATGTTCACAATTTCTTCATTTCATTCGTTTGTTTAATAAATTTCTAATCTACGCGAGAACTAGCAATAGATTTTTCCTTTTTTTGTTGATTTGAATATTGTTCCATGTTGGCTTGTCATTGATGAAGAGGATTCACGTTCTTCAATGAATTGAAAGACATGTGGCTAGAACTTTTGCATGGGGGGTTCGGAAATTAGTGTCTACAAAATAAAGGATTTAATGCTCCTTGTTATATGGTTTTGTGTTTCTAGGTTTTTTTCCTTTTTTTTCTTTTCAGATTTGAACTTCTAACTTCTGTTAGATTATAACCAATTGAGTTTTGATTTCTTTGAAAGATTAAGTAATTGCTTTTATTTATTTATGTTTGTTAAGAAAATGTGTCCCTTCTGGTTGTAATGTCCATGAGTTTGTTTAATTTAATAATTTTTTCTTTCTTTGTGCTTTGGGAATCTCTTTATCAATTCAATAATTGTTTTGGGTTTTTTTTTAAAAAAAAATTTATTGGGGTTGCAATCATGAAGAAAACAGCTTTTGAAAGTTTACATCTTCCATTTTAGCCATTTAGGTGAAAAGGAAAAAGATTTTCAGTATAATGTTAGGATTTTGAAAATGCTTTGGATTGAATTCTATTCTTTGCTTACTACTGGTAAAAAGTGAAAAACTTTCTTTCTTTGAGATTTTAGTATTACCCCATGATGTCGATGGCTTTTATTATTGTACACGGATTTTATGAATGTAATATTGAATTTCCTTTAATATAAATGTAGATTTCATAATATATTCAATTGTTTGGTTCTTTATGATTAATGTCGTGAATGAGTTGTTGTTGACATTGTTCTTAGAGTATTACCTTCTGGAGCTAGCTTCTCAAGTCAAACTTTATAGAGACTCTTAATTCTGTTGTTGCAAAAATTGTCGGAAAATTTGGTTTTGCATGTAGAACTTAGTTCTCAACATACCTGGATTAGGATTCTTTTGCTTGCAGCACCCCGAACACATCGCATATACACTTTTTCGATTATCTTTTCGTCCTCTATCTTTTGCTCTATAATGATGCTGCACAAATGCAACAATCTCTACACTCTTGGACATTTGTGATACTTGTCTAGAAACATGTGATAGGATATTTTTAATATGTGTTAGATTCATGGTTTCGAGTAGTACAGAGGATATCCATCCAATTGTCGACGGATCTGTCATAAGAGATGTGTTGTACCTAGTACAATATATATGACAGATATGTTCTGACAGGCCGAGCCAACCAGTTGTCTTGTGTATTATCAAGCAAGTGAAGTTGACTTCAAATCAGCTTATTTGATTGGTGATACTTCTGATATGTCATGCGGAATGGTCTGAGGAAGGGAAAATGAACTATAATTTAATGAAATTCTAAGAAATTGGTGATTCATGTAGTAGCTTGTGTTAGCATCTCGGTGGCGAGGGCTTCAGATGCATAGAGATACTTTCTAGGGTCCTATTTTAAAGATCCTAAGGTTAAATAAATTTAAAACTCTTGTTGTTTTTTAGAACTGATCTTGCGGTATGCAAAACCTCACCAGGGATTAGCAAACTCTTAGGTTTCAAAAAAGAGAACTGAAGGCAGAAGTTCTGTAGCTTTTGTTGATGTAACAGGTAATGACTGTTTCAGTTTAGCTTAGTATTTGATGTCATTGTATTGATTTTATTAGTTTTACAATACTATCTTCTTCTTTGTAATTGTCTCTCGCAATTACAAATATAGCAATCAGCCTAAAGTATTAGCAGATGTAGCACAATGCAAAAGAATGTGTAGATATAACAAAATTTAGATCCTACTCTTAGTGATAGACTATATCGTTGGTAGAAGTCTATCAGCGATAGGGTCCATCATTGATAGATTTTGCTATATTTGCAATTCTTTAAAAAAGTTGCTATGCACTTTATTATTAGCCTAAAAGTGCTATTCATTGTAATTGCCAACTTTGAGAATACTTCAAGGTCAAGTTCTCTATCTTTCTTGCCCTCCTGATACTGGTCAGGATAGTGTTTGTTTGGGGACCTTGTGAAAAATTGGCTGATACTGCATAGTGCAACTTTGTTGAATGGTCGAGATCATTGACTTTATCGAAGGAGTGCAATCAAGCTCGAAATTGGGACTCCTTGGTTGATGACTAATACTAAACAATACTCTCAAGTGGAATACATGTTGGTTTTGGAGACTACAGCAGAACTGAATTCCTCTACACTGCAATACGGGTCGGTTTTGGAGAATTATCTGTAATCGCGGTCAACCATTTCATTACTTGTATGATATATAGGATGTAGAAAATTCTTGGAATTTTGTTCCAAAAGTTTTAGACTAAAAGATGTTCTGTCCATCTGACAACAGGAGAGCCTATTTTGTTCTGAAGCTGTAGATATCCTTATAGGAAAATTTAAGTTTCTTGACATTCTCATGGTTTTGGTTGATTGATTTCAGGATCCATACTTAAACAATGTCTTATTTGGAAATTTATGAGGAATCTAATCTAGAATGTTACTGTGGAGTACCTGCAAAACTAAGAATGTCTCAGACAGAAAAAAATCCATTCAGGCTATTCTACAACTGTCCAAAGGAGATATCTCAAGTAAGCATTATACAAATTGATATACTCTCTACTTAGTTTACTTCCACTCCTTTATATTTATGTTCTGAACATTGCCAGCAATGTGGTTTCTTTCATTGGGCTGATGAACCCGAACCATGCGATGATAGACACGTCAATGAACTAGACTTGATCCGCAACGTGTGTATTCGTCTAACAGAAAGATTTGACGAAATGGAAGAGGAACATGAGGATGAGAAAGCAGAGTGGGAAAGGGAAAAGGCTGAGCTAACATTGAAACTATCAACTCTGCAGACTCAGCTTGATGATATTCATAATAGAATAAGGATGACGAATGAATCGTTTTCAATGCCTCCTTTTGATTCACTTTCTATTAGGGACGACGACGACGACACGTTAGTTATATATACTTTGTAAATTATGTTGAGTGAAGTGAGAGAATCATGTAGCTATCTATTTTCGGTACGTGTTTGAGCTTTTGTTTAAAAGTTGTGTGCTCCATTCATTTTCTGCTTAGTTTGATACCTAGATGCCCCTAAAAATGCCACTGTTCGATAGCTAAGAGTCTAAGACAGCAGGGGAGGACAAAAGTATAGCTAGTCGACTTCGTTTGGTAACTATTTTGTTGCTTGTTTCGGAAGAAAAATGAGAACATGATGGAAGTTCTATATGAAAATGCTTTTTTTTCTTCACTTA

mRNA sequence

GGATAAGATTAGTCACTGTCAGGAGAAAAAACACTCCAAAACAAAGAAGATTCCGATCATCTTAGAAACTGCTTTTGGTTTGGCCCCCACACGATAAGCTTCAAACTCCTCGATCTCTTCATTTACAGAACAATCGTCATTGCTTGTATCAATGCGACGACGATCTTCCTTTGCTGCTTCAATCGGTTGCTCCAGTTTACCAACCACGCTCTTTTAGGATCCATACTTAAACAATGTCTTATTTGGAAATTTATGAGGAATCTAATCTAGAATGTTACTGTGGAGTACCTGCAAAACTAAGAATGTCTCAGACAGAAAAAAATCCATTCAGGCTATTCTACAACTGTCCAAAGGAGATATCTCAACAATGTGGTTTCTTTCATTGGGCTGATGAACCCGAACCATGCGATGATAGACACGTCAATGAACTAGACTTGATCCGCAACGTGTGTATTCGTCTAACAGAAAGATTTGACGAAATGGAAGAGGAACATGAGGATGAGAAAGCAGAGTGGGAAAGGGAAAAGGCTGAGCTAACATTGAAACTATCAACTCTGCAGACTCAGCTTGATGATATTCATAATAGAATAAGGATGACGAATGAATCGTTTTCAATGCCTCCTTTTGATTCACTTTCTATTAGGGACGACGACGACGACACGTTAGTTATATATACTTTGTAAATTATGTTGAGTGAAGTGAGAGAATCATGTAGCTATCTATTTTCGGTACGTGTTTGAGCTTTTGTTTAAAAGTTGTGTGCTCCATTCATTTTCTGCTTAGTTTGATACCTAGATGCCCCTAAAAATGCCACTGTTCGATAGCTAAGAGTCTAAGACAGCAGGGGAGGACAAAAGTATAGCTAGTCGACTTCGTTTGGTAACTATTTTGTTGCTTGTTTCGGAAGAAAAATGAGAACATGATGGAAGTTCTATATGAAAATGCTTTTTTTTCTTCACTTA

Coding sequence (CDS)

ATGTCTTATTTGGAAATTTATGAGGAATCTAATCTAGAATGTTACTGTGGAGTACCTGCAAAACTAAGAATGTCTCAGACAGAAAAAAATCCATTCAGGCTATTCTACAACTGTCCAAAGGAGATATCTCAACAATGTGGTTTCTTTCATTGGGCTGATGAACCCGAACCATGCGATGATAGACACGTCAATGAACTAGACTTGATCCGCAACGTGTGTATTCGTCTAACAGAAAGATTTGACGAAATGGAAGAGGAACATGAGGATGAGAAAGCAGAGTGGGAAAGGGAAAAGGCTGAGCTAACATTGAAACTATCAACTCTGCAGACTCAGCTTGATGATATTCATAATAGAATAAGGATGACGAATGAATCGTTTTCAATGCCTCCTTTTGATTCACTTTCTATTAGGGACGACGACGACGACACGTTAGTTATATATACTTTGTAA

Protein sequence

MSYLEIYEESNLECYCGVPAKLRMSQTEKNPFRLFYNCPKEISQQCGFFHWADEPEPCDDRHVNELDLIRNVCIRLTERFDEMEEEHEDEKAEWEREKAELTLKLSTLQTQLDDIHNRIRMTNESFSMPPFDSLSIRDDDDDTLVIYTL

Homology

[Close]

BLAST of Lsi03G005500 vs. TrEMBL
Match: A0A0A0K2H6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G071640 PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 6.5e-69
Identity = 132/150 (88.00%), Postives = 137/150 (91.33%), Query Frame = 1


Query: 1   MSYLEIYEESNLECYCGVPAKLRMSQTEKNPFRLFYNCPKEISQQCGFFHWADEPEPCDD 60
           MS  EIYEES LECYCGV AKLRMS TEK PFRLFYNCPKEISQQCGFFHWADE EP +D
Sbjct: 1   MSSSEIYEESYLECYCGVAAKLRMSHTEKGPFRLFYNCPKEISQQCGFFHWADEREPSND 60

Query: 61  RHVNELDLIRNVCIRLTERFDEMEEEHEDEKAEWEREKAELTLKLSTLQTQLDDIHNRIR 120
           RH NELDLIRNVCIRLTER DE+ EEHEDEK EWEREKAELTLKLSTLQTQLDDIHNR+R
Sbjct: 61  RHANELDLIRNVCIRLTERLDEIVEEHEDEKEEWEREKAELTLKLSTLQTQLDDIHNRVR 120

Query: 121 MTNESFSMPPFDSLSIRDDDDD-TLVIYTL 150
           +TNESFSMPPF+SLSIRDDDDD TLVIYTL
Sbjct: 121 ITNESFSMPPFESLSIRDDDDDNTLVIYTL 150

[Close]

BLAST of Lsi03G005500 vs. TrEMBL
Match: M5VLB7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012827mg PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.7e-40
Identity = 85/142 (59.86%), Postives = 108/142 (76.06%), Query Frame = 1


Query: 9   ESNLECYCGVPAKLRMSQTEKNPFRLFYNCPKEISQQCGFFHWADEPEPCDDRHVNELDL 68
           +S L+C CG+PAKLR+SQT KNPFRLFYNCPK IS QC FF W+DEP P  DR  +E +L
Sbjct: 11  DSELKCLCGLPAKLRLSQTPKNPFRLFYNCPKGISAQCEFFCWSDEPAPTGDRETDEQNL 70

Query: 69  IRNVCIRLTERFDEMEEEHEDEKAEWEREKAELTLKLSTLQTQLDDIHNRIRMTNESFSM 128
           IR+ CIRL E  +E+++E + E+ EW REK+ELT +LST+Q +LD +  RI+M NES  M
Sbjct: 71  IRHECIRLQESLNEIQQELDCERTEWGREKSELTSQLSTVQFELDALKKRIKMANESDLM 130

Query: 129 PPFDSLSIRDD-DDDTLVIYTL 150
           PP D LSI DD DDD LV++T+
Sbjct: 131 PPLDKLSIADDKDDDALVLHTV 152

[Close]

BLAST of Lsi03G005500 vs. TrEMBL
Match: A0A067LJH2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16267 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 2.2e-40
Identity = 80/144 (55.56%), Postives = 110/144 (76.39%), Query Frame = 1


Query: 7   YEESNLECYCGVPAKLRMSQTEKNPFRLFYNCPKEISQQCGFFHWADEPEPCDDRHVNEL 66
           YE+S ++C+CG+PAKLR+S T++NP+RLFYNCPK  + QCGFFHW+DE     DRH++EL
Sbjct: 35  YEDSEVKCFCGLPAKLRVSHTDRNPYRLFYNCPKSYNAQCGFFHWSDESAETGDRHIDEL 94

Query: 67  DLIRNVCIRLTERFDEMEEEHEDEKAEWEREKAELTLKLSTLQTQLDDIHNRIRMTNESF 126
           +LIR+ CIRL  R D       ++++EWEREK+EL  KL+ +Q++L DI NRI+  N+S 
Sbjct: 95  NLIRDECIRLQGRLD-------NDRSEWEREKSELMSKLNAVQSELKDIKNRIKTVNDSD 154

Query: 127 SMPPFD-SLSIRDDDDDTLVIYTL 150
            MPPFD SLS+ DD DD +VI+T+
Sbjct: 155 LMPPFDKSLSVDDDGDDAIVIHTI 171

[Close]

BLAST of Lsi03G005500 vs. TrEMBL
Match: B9HS75_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s09700g PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.4e-31
Identity = 72/143 (50.35%), Postives = 99/143 (69.23%), Query Frame = 1


Query: 8   EESNLECYCGVPAKLRMSQTEKNPFRLFYNCPKEISQQCGFFHWADEPEPCDDRHVNELD 67
           E++ LECYCG  AKLR+S T KNP RLFYNCP  I  QCG+F WADE      +H  EL+
Sbjct: 163 EDACLECYCGRLAKLRVSNTTKNPSRLFYNCPMRIDSQCGYFEWADELGQA--KHTKELN 222

Query: 68  LIRNVCIRLTERFDEMEEEHEDEKAEWEREKAELTLKLSTLQTQLDDIHNRIRMTNESFS 127
            IR  C +L ER ++++++ ++++  W+RE++ELT +L T+Q +LDDI  +I+M NES  
Sbjct: 223 KIRLRCTQLQERLEDIQQQRDNDRIVWQRERSELTTRLFTVQAELDDIKKKIKMVNESEL 282

Query: 128 MPPFDSLS--IRDDD-DDTLVIY 148
           MPP D LS  + DD+ DD  VIY
Sbjct: 283 MPPLDKLSSTVADDERDDAKVIY 303

[Close]

BLAST of Lsi03G005500 vs. TrEMBL
Match: A0A068TLQ3_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00014505001 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.8e-26
Identity = 64/152 (42.11%), Postives = 101/152 (66.45%), Query Frame = 1


Query: 1   MSYLEIYEESNLECYCGVPAKLRMSQTEKNPFRLFYNCPK-EISQQCGFFHWADEPEPCD 60
           +S L+  +   L+C CG+ A  R+S+T  N FRLFYNCPK + + QC FF WAD+  P  
Sbjct: 6   VSDLKCSKGFELKCKCGLTAGRRVSRTRANLFRLFYNCPKSDFADQCEFFEWADDLSPTG 65

Query: 61  DRHVNELDLIRNVCIRLTERFDEMEEEHEDEKAEWEREKAELTLKLSTLQTQLDDIHNRI 120
           D+H++E++ I + C RL ER D + EEH+ E+A W RE+ +L  +L +++ +LD +  RI
Sbjct: 66  DKHLDEINEISSECRRLQERIDLIREEHDTERATWIREREQLMSQLLSIKMELDQMKTRI 125

Query: 121 RMTNESFSMPPFDS--LSIRDDDDDTLVIYTL 150
           ++ +ES  MPP+D    + +D++DD +VI T+
Sbjct: 126 KIVHESDLMPPYDEKLSNPKDEEDDPVVIQTV 157

[Close]

BLAST of Lsi03G005500 vs. NCBI nr
Match: gi|659110016|ref|XP_008455003.1| (PREDICTED: uncharacterized protein LOC103495284 [Cucumis melo])

HSP 1 Score: 268.1 bits (684), Expect = 9.3e-69
Identity = 131/151 (86.75%), Postives = 137/151 (90.73%), Query Frame = 1


Query: 1   MSYLEIYEESNLECYCGVPAKLRMSQTEKNPFRLFYNCPKEISQQCGFFHWADEPEPCDD 60
           MS  EIYEES LECYCG  AKLRMS TEKNPFRLFYNCPKE+SQQCGFFHWADEPEP DD
Sbjct: 1   MSSSEIYEESYLECYCGAAAKLRMSHTEKNPFRLFYNCPKELSQQCGFFHWADEPEPSDD 60

Query: 61  RHVNELDLIRNVCIRLTERFDEMEEEHEDEKAEWEREKAELTLKLSTLQTQLDDIHNRIR 120
           RH NELDLIRNVCIRLTER DE+ EEHEDEK EWEREKAELTLKLSTLQTQLDDI+NRIR
Sbjct: 61  RHANELDLIRNVCIRLTERLDEIIEEHEDEKEEWEREKAELTLKLSTLQTQLDDINNRIR 120

Query: 121 MTNESFSMPPFDSLSIRDDDD--DTLVIYTL 150
           +TNESFSMPPF+SLSIRDDDD  DTLV+Y L
Sbjct: 121 ITNESFSMPPFESLSIRDDDDNNDTLVVYAL 151

[Close]

BLAST of Lsi03G005500 vs. NCBI nr
Match: gi|449438355|ref|XP_004136954.1| (PREDICTED: uncharacterized protein LOC101219463 [Cucumis sativus])

HSP 1 Score: 268.1 bits (684), Expect = 9.3e-69
Identity = 132/150 (88.00%), Postives = 137/150 (91.33%), Query Frame = 1


Query: 1   MSYLEIYEESNLECYCGVPAKLRMSQTEKNPFRLFYNCPKEISQQCGFFHWADEPEPCDD 60
           MS  EIYEES LECYCGV AKLRMS TEK PFRLFYNCPKEISQQCGFFHWADE EP +D
Sbjct: 1   MSSSEIYEESYLECYCGVAAKLRMSHTEKGPFRLFYNCPKEISQQCGFFHWADEREPSND 60

Query: 61  RHVNELDLIRNVCIRLTERFDEMEEEHEDEKAEWEREKAELTLKLSTLQTQLDDIHNRIR 120
           RH NELDLIRNVCIRLTER DE+ EEHEDEK EWEREKAELTLKLSTLQTQLDDIHNR+R
Sbjct: 61  RHANELDLIRNVCIRLTERLDEIVEEHEDEKEEWEREKAELTLKLSTLQTQLDDIHNRVR 120

Query: 121 MTNESFSMPPFDSLSIRDDDDD-TLVIYTL 150
           +TNESFSMPPF+SLSIRDDDDD TLVIYTL
Sbjct: 121 ITNESFSMPPFESLSIRDDDDDNTLVIYTL 150

[Close]

BLAST of Lsi03G005500 vs. NCBI nr
Match: gi|645261646|ref|XP_008236394.1| (PREDICTED: uncharacterized protein LOC103335166 isoform X2 [Prunus mume])

HSP 1 Score: 177.6 bits (449), Expect = 1.7e-41
Identity = 86/143 (60.14%), Postives = 110/143 (76.92%), Query Frame = 1


Query: 8   EESNLECYCGVPAKLRMSQTEKNPFRLFYNCPKEISQQCGFFHWADEPEPCDDRHVNELD 67
           E+S L+C CG+PAKLR+SQT KNPFRLFYNCPK IS QC FF W+DEP P  DR  +E +
Sbjct: 10  EDSELKCLCGLPAKLRLSQTPKNPFRLFYNCPKGISAQCEFFRWSDEPAPTGDRETDEQN 69

Query: 68  LIRNVCIRLTERFDEMEEEHEDEKAEWEREKAELTLKLSTLQTQLDDIHNRIRMTNESFS 127
           LIR+ CIRL E  +E+++E + E+ EW REK+ELT +LSTLQ++LD +  RI++ NES  
Sbjct: 70  LIRHECIRLQESLNEIQQELDCERTEWGREKSELTSQLSTLQSELDALKKRIKIANESDL 129

Query: 128 MPPFDSLSIRDD-DDDTLVIYTL 150
           MPP D LSI DD DDD LV++T+
Sbjct: 130 MPPLDKLSIADDKDDDALVLHTV 152

[Close]

BLAST of Lsi03G005500 vs. NCBI nr
Match: gi|645261644|ref|XP_008236393.1| (PREDICTED: uncharacterized protein LOC103335166 isoform X1 [Prunus mume])

HSP 1 Score: 177.6 bits (449), Expect = 1.7e-41
Identity = 86/143 (60.14%), Postives = 110/143 (76.92%), Query Frame = 1


Query: 8   EESNLECYCGVPAKLRMSQTEKNPFRLFYNCPKEISQQCGFFHWADEPEPCDDRHVNELD 67
           E+S L+C CG+PAKLR+SQT KNPFRLFYNCPK IS QC FF W+DEP P  DR  +E +
Sbjct: 22  EDSELKCLCGLPAKLRLSQTPKNPFRLFYNCPKGISAQCEFFRWSDEPAPTGDRETDEQN 81

Query: 68  LIRNVCIRLTERFDEMEEEHEDEKAEWEREKAELTLKLSTLQTQLDDIHNRIRMTNESFS 127
           LIR+ CIRL E  +E+++E + E+ EW REK+ELT +LSTLQ++LD +  RI++ NES  
Sbjct: 82  LIRHECIRLQESLNEIQQELDCERTEWGREKSELTSQLSTLQSELDALKKRIKIANESDL 141

Query: 128 MPPFDSLSIRDD-DDDTLVIYTL 150
           MPP D LSI DD DDD LV++T+
Sbjct: 142 MPPLDKLSIADDKDDDALVLHTV 164

[Close]

BLAST of Lsi03G005500 vs. NCBI nr
Match: gi|595793437|ref|XP_007200467.1| (hypothetical protein PRUPE_ppa012827mg [Prunus persica])

HSP 1 Score: 173.7 bits (439), Expect = 2.4e-40
Identity = 85/142 (59.86%), Postives = 108/142 (76.06%), Query Frame = 1


Query: 9   ESNLECYCGVPAKLRMSQTEKNPFRLFYNCPKEISQQCGFFHWADEPEPCDDRHVNELDL 68
           +S L+C CG+PAKLR+SQT KNPFRLFYNCPK IS QC FF W+DEP P  DR  +E +L
Sbjct: 11  DSELKCLCGLPAKLRLSQTPKNPFRLFYNCPKGISAQCEFFCWSDEPAPTGDRETDEQNL 70

Query: 69  IRNVCIRLTERFDEMEEEHEDEKAEWEREKAELTLKLSTLQTQLDDIHNRIRMTNESFSM 128
           IR+ CIRL E  +E+++E + E+ EW REK+ELT +LST+Q +LD +  RI+M NES  M
Sbjct: 71  IRHECIRLQESLNEIQQELDCERTEWGREKSELTSQLSTVQFELDALKKRIKMANESDLM 130

Query: 129 PPFDSLSIRDD-DDDTLVIYTL 150
           PP D LSI DD DDD LV++T+
Sbjct: 131 PPLDKLSIADDKDDDALVLHTV 152

The following BLAST results are available for this feature:

BLAST of Lsi03G005500 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi03G005500 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K2H6_CUCSA	6.5e-69	88.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G071640 PE=4 SV=1	[more]
M5VLB7_PRUPE	1.7e-40	59.86	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012827mg PE=4 SV=1	[more]
A0A067LJH2_JATCU	2.2e-40	55.56	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16267 PE=4 SV=1	[more]
B9HS75_POPTR	2.4e-31	50.35	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s09700g PE=4 SV=1	[more]
A0A068TLQ3_COFCA	1.8e-26	42.11	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00014505001 PE=4 SV=1	[more]

BLAST of Lsi03G005500 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi03G005500 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659110016\|ref\|XP_008455003.1\|	9.3e-69	86.75	PREDICTED: uncharacterized protein LOC103495284 [Cucumis melo]	[more]
gi\|449438355\|ref\|XP_004136954.1\|	9.3e-69	88.00	PREDICTED: uncharacterized protein LOC101219463 [Cucumis sativus]	[more]
gi\|645261646\|ref\|XP_008236394.1\|	1.7e-41	60.14	PREDICTED: uncharacterized protein LOC103335166 isoform X2 [Prunus mume]	[more]
gi\|645261644\|ref\|XP_008236393.1\|	1.7e-41	60.14	PREDICTED: uncharacterized protein LOC103335166 isoform X1 [Prunus mume]	[more]
gi\|595793437\|ref\|XP_007200467.1\|	2.4e-40	59.86	hypothetical protein PRUPE_ppa012827mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR010666	Znf_GRF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi03G005500.1	Lsi03G005500.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010666	Zinc finger, GRF-type	PFAM	PF06839	zf-GRF	coord: 14..54 score: 1.5
None	No IPR available	unknown	Coil	Coil	coord: 66..118 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi03G005500	Csa7G071640	Cucumber (Chinese Long) v2	culsiB522
Lsi03G005500	CSPI07G07110	Wild cucumber (PI 183967)	cpilsiB536
Lsi03G005500	Cucsa.219390	Cucumber (Gy14) v1	cgylsiB367
Lsi03G005500	Cla016071	Watermelon (97103) v1	lsiwmB268
Lsi03G005500	MELO3C018497	Melon (DHL92) v3.5.1	lsimeB247
Lsi03G005500	ClCG02G006530	Watermelon (Charleston Gray)	lsiwcgB233
Lsi03G005500	MELO3C018497.2	Melon (DHL92) v3.6.1	lsimedB260
Lsi03G005500	Cla97C02G033520	Watermelon (97103) v2	lsiwmbB226
Lsi03G005500	Bhi05G000991	Wax gourd	lsiwgoB316
Lsi03G005500	CsGy7G006690	Cucumber (Gy14) v2	cgyblsiB488
Lsi03G005500	CsaV3_7G008070	Cucumber (Chinese Long) v3	cuclsiB555

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi03G005500	Wax gourd	lsiwgoB314
Lsi03G005500	Wax gourd	lsiwgoB323
Lsi03G005500	Wax gourd	lsiwgoB344
Lsi03G005500	Bottle gourd (USVL1VR-Ls)	lsilsiB130
Lsi03G005500	Bottle gourd (USVL1VR-Ls)	lsilsiB132
Lsi03G005500	Cucumber (Gy14) v1	cgylsiB568
Lsi03G005500	Cucurbita maxima (Rimu)	cmalsiB116
Lsi03G005500	Cucurbita maxima (Rimu)	cmalsiB309
Lsi03G005500	Cucurbita maxima (Rimu)	cmalsiB484
Lsi03G005500	Cucurbita maxima (Rimu)	cmalsiB662
Lsi03G005500	Cucurbita moschata (Rifu)	cmolsiB103
Lsi03G005500	Cucurbita moschata (Rifu)	cmolsiB411
Lsi03G005500	Cucurbita moschata (Rifu)	cmolsiB468
Lsi03G005500	Cucurbita moschata (Rifu)	cmolsiB650
Lsi03G005500	Cucurbita pepo (Zucchini)	cpelsiB208
Lsi03G005500	Cucurbita pepo (Zucchini)	cpelsiB348
Lsi03G005500	Cucurbita pepo (Zucchini)	cpelsiB454
Lsi03G005500	Cucurbita pepo (Zucchini)	cpelsiB543
Lsi03G005500	Wild cucumber (PI 183967)	cpilsiB188
Lsi03G005500	Wild cucumber (PI 183967)	cpilsiB278
Lsi03G005500	Cucumber (Chinese Long) v2	culsiB189
Lsi03G005500	Cucumber (Chinese Long) v2	culsiB279
Lsi03G005500	Melon (DHL92) v3.5.1	lsimeB272
Lsi03G005500	Watermelon (Charleston Gray)	lsiwcgB242
Lsi03G005500	Watermelon (Charleston Gray)	lsiwcgB243
Lsi03G005500	Watermelon (97103) v1	lsiwmB255
Lsi03G005500	Watermelon (97103) v1	lsiwmB256
Lsi03G005500	Cucumber (Gy14) v2	cgyblsiB103
Lsi03G005500	Cucumber (Gy14) v2	cgyblsiB173
Lsi03G005500	Melon (DHL92) v3.6.1	lsimedB271
Lsi03G005500	Melon (DHL92) v3.6.1	lsimedB280
Lsi03G005500	Melon (DHL92) v3.6.1	lsimedB285
Lsi03G005500	Silver-seed gourd	carlsiB167
Lsi03G005500	Silver-seed gourd	carlsiB267
Lsi03G005500	Silver-seed gourd	carlsiB342
Lsi03G005500	Silver-seed gourd	carlsiB411
Lsi03G005500	Cucumber (Chinese Long) v3	cuclsiB128
Lsi03G005500	Cucumber (Chinese Long) v3	cuclsiB205
Lsi03G005500	Cucumber (Chinese Long) v3	cuclsiB300
Lsi03G005500	Watermelon (97103) v2	lsiwmbB236
Lsi03G005500	Watermelon (97103) v2	lsiwmbB237
Lsi03G005500	Watermelon (97103) v2	lsiwmbB244