Cla97C02G033520 (gene) Watermelon (97103) v2

NameCla97C02G033520
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionDNA topoisomerase
LocationCla97Chr02 : 7035477 .. 7036009 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTTGGAAATTTATGAGGAATCTAATCTTGAATGTTACTGTGGAGTGCCTGCCAAACTACGAATGTCTCAGACAGAAAAAAATCCATTCAGGCTATTGTACAACTGTCCAAAGGAGATATCTCAAGTAAGCATATAAATCCTCTATCCTCATCCAACTTAAAGAACTACTACAAGTTGATATACTCTGATTTTTGTTCTGGACACTGCCAGCAATGTGGTTTCTTTCATTGGGCTGATGAAACTGAACCATTTGATGATAGACACGCTAACGAACTAGACTTGATCCGCAACGTGTGTATTCGTCTAACAGAAAGATTTGAGGAAATCGAAGAGGAGCACGAGGATGAGAAAGCAGAGTGGGAAAGGGAAAAGGCTGAGCTAACATTAAAACTATCAGCTCTGCAGACTCAGCTTGATGATATTCATAATAGAATAAGGATGACGAATGAATCCTTTTCAATGCCTCCACTTTCCATTAGGGACGACGAGGATGAGGATGATGATGCATTTGTTATATATAATTTGTAA

mRNA sequence

ATGTCTTTGGAAATTTATGAGGAATCTAATCTTGAATGTTACTGTGGAGTGCCTGCCAAACTACGAATGTCTCAGACAGAAAAAAATCCATTCAGGCTATTGTACAACTGTCCAAAGGAGATATCTCAACAATGTGGTTTCTTTCATTGGGCTGATGAAACTGAACCATTTGATGATAGACACGCTAACGAACTAGACTTGATCCGCAACGTGTGTATTCGTCTAACAGAAAGATTTGAGGAAATCGAAGAGGAGCACGAGGATGAGAAAGCAGAGTGGGAAAGGGAAAAGGCTGAGCTAACATTAAAACTATCAGCTCTGCAGACTCAGCTTGATGATATTCATAATAGAATAAGGATGACGAATGAATCCTTTTCAATGCCTCCACTTTCCATTAGGGACGACGAGGATGAGGATGATGATGCATTTGTTATATATAATTTGTAA

Coding sequence (CDS)

ATGTCTTTGGAAATTTATGAGGAATCTAATCTTGAATGTTACTGTGGAGTGCCTGCCAAACTACGAATGTCTCAGACAGAAAAAAATCCATTCAGGCTATTGTACAACTGTCCAAAGGAGATATCTCAACAATGTGGTTTCTTTCATTGGGCTGATGAAACTGAACCATTTGATGATAGACACGCTAACGAACTAGACTTGATCCGCAACGTGTGTATTCGTCTAACAGAAAGATTTGAGGAAATCGAAGAGGAGCACGAGGATGAGAAAGCAGAGTGGGAAAGGGAAAAGGCTGAGCTAACATTAAAACTATCAGCTCTGCAGACTCAGCTTGATGATATTCATAATAGAATAAGGATGACGAATGAATCCTTTTCAATGCCTCCACTTTCCATTAGGGACGACGAGGATGAGGATGATGATGCATTTGTTATATATAATTTGTAA

Protein sequence

MSLEIYEESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADETEPFDDRHANELDLIRNVCIRLTERFEEIEEEHEDEKAEWEREKAELTLKLSALQTQLDDIHNRIRMTNESFSMPPLSIRDDEDEDDDAFVIYNL
BLAST of Cla97C02G033520 vs. NCBI nr
Match: XP_004136954.1 (PREDICTED: uncharacterized protein LOC101219463 [Cucumis sativus] >KGN43875.1 hypothetical protein Csa_7G071640 [Cucumis sativus])

HSP 1 Score: 191.8 bits (486), Expect = 1.6e-45
Identity = 111/150 (74.00%), Postives = 117/150 (78.00%), Query Frame = 0

Query: 2   SLEIYEESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADETEPFDDRH 61
           S EIYEES LECYCGV AKLRMS TEK PFRL YNCPKEISQQCGFFHWADE EP +DRH
Sbjct: 3   SSEIYEESYLECYCGVAAKLRMSHTEKGPFRLFYNCPKEISQQCGFFHWADEREPSNDRH 62

Query: 62  ANELDLIRNVCIRLTERFEEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDIHNRIRMT 121
           ANELDLIRNVCIRLTER +EI    XXXXXXXXXXXXX            DDIHNR+R+T
Sbjct: 63  ANELDLIRNVCIRLTERLDEIVEEHXXXXXXXXXXXXXLTLKLSTLQTQLDDIHNRVRIT 122

Query: 122 NESFSMPP---LSIRDDEDEDDDAFVIYNL 149
           NESFSMPP   LSIRD  D+DD+  VIY L
Sbjct: 123 NESFSMPPFESLSIRD--DDDDNTLVIYTL 150

BLAST of Cla97C02G033520 vs. NCBI nr
Match: XP_008455003.1 (PREDICTED: uncharacterized protein LOC103495284 [Cucumis melo] >XP_008455004.1 PREDICTED: uncharacterized protein LOC103495284 [Cucumis melo] >XP_008455006.1 PREDICTED: uncharacterized protein LOC103495284 [Cucumis melo] >XP_016901682.1 PREDICTED: uncharacterized protein LOC103495284 [Cucumis melo])

HSP 1 Score: 190.7 bits (483), Expect = 3.7e-45
Identity = 109/150 (72.67%), Postives = 117/150 (78.00%), Query Frame = 0

Query: 2   SLEIYEESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADETEPFDDRH 61
           S EIYEES LECYCG  AKLRMS TEKNPFRL YNCPKE+SQQCGFFHWADE EP DDRH
Sbjct: 3   SSEIYEESYLECYCGAAAKLRMSHTEKNPFRLFYNCPKELSQQCGFFHWADEPEPSDDRH 62

Query: 62  ANELDLIRNVCIRLTERFEEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDIHNRIRMT 121
           ANELDLIRNVCIRLTER +EI     XXXXXXXXXXXX            DDI+NRIR+T
Sbjct: 63  ANELDLIRNVCIRLTERLDEIIEEHEXXXXXXXXXXXXLTLKLSTLQTQLDDINNRIRIT 122

Query: 122 NESFSMPP---LSIRDDEDEDDDAFVIYNL 149
           NESFSMPP   LSIRDD D+++D  V+Y L
Sbjct: 123 NESFSMPPFESLSIRDD-DDNNDTLVVYAL 151

BLAST of Cla97C02G033520 vs. NCBI nr
Match: XP_022148840.1 (uncharacterized protein LOC111017399 [Momordica charantia])

HSP 1 Score: 178.7 bits (452), Expect = 1.4e-41
Identity = 91/148 (61.49%), Postives = 98/148 (66.22%), Query Frame = 0

Query: 4   EIYEESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADETEPFDDRHAN 63
           EI+EES LECYCG+PAKLR SQT KNPFRL YNCPKEISQQCGFFHWADE EP DDRH  
Sbjct: 5   EIFEESELECYCGLPAKLRTSQTPKNPFRLFYNCPKEISQQCGFFHWADEPEPSDDRHVE 64

Query: 64  ELDLIRNVCIRLTERFEEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDIHNRIRMTNE 123
           EL+LIRNVC+ L +R +EI                             DDI +RIRM NE
Sbjct: 65  ELNLIRNVCLHLQDRLDEIEEEHDNEKAEWERDKEELTLQLVTLQSQLDDIQHRIRMANE 124

Query: 124 SFSMPP---LSIRDDEDEDDDAFVIYNL 149
           SFSMPP   LSIRD  DE DDA VIY L
Sbjct: 125 SFSMPPLDALSIRD--DEGDDALVIYTL 150

BLAST of Cla97C02G033520 vs. NCBI nr
Match: XP_021827332.1 (uncharacterized protein At4g04775-like isoform X1 [Prunus avium])

HSP 1 Score: 126.7 bits (317), Expect = 6.5e-26
Identity = 68/145 (46.90%), Postives = 82/145 (56.55%), Query Frame = 0

Query: 7   EESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADETEPFDDRHANELD 66
           E+S L+C CG+PAKLR+SQT KNPFRL YNCPK +S QC FF W DE  P  +R  +E +
Sbjct: 22  EDSELKCLCGLPAKLRLSQTPKNPFRLFYNCPKGVSAQCEFFRWWDEPAPTGNRETDEQN 81

Query: 67  LIRNVCIRLTERFEEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDIHNRIRMTNESFS 126
           LIR+ CIRL E   EI                             D +  RI+M NES  
Sbjct: 82  LIRHECIRLQESLNEIQQELDCERTEWGREKSELTSQLSTVQSELDALKKRIKMANESDL 141

Query: 127 MPPL---SIRDDEDEDDDAFVIYNL 149
           MPPL   SI D  DEDDDAFV++ +
Sbjct: 142 MPPLDKPSIAD--DEDDDAFVLHTV 164

BLAST of Cla97C02G033520 vs. NCBI nr
Match: XP_021827333.1 (uncharacterized protein At4g04775-like isoform X2 [Prunus avium] >XP_021827334.1 uncharacterized protein At4g04775-like isoform X2 [Prunus avium])

HSP 1 Score: 126.7 bits (317), Expect = 6.5e-26
Identity = 68/145 (46.90%), Postives = 82/145 (56.55%), Query Frame = 0

Query: 7   EESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADETEPFDDRHANELD 66
           E+S L+C CG+PAKLR+SQT KNPFRL YNCPK +S QC FF W DE  P  +R  +E +
Sbjct: 10  EDSELKCLCGLPAKLRLSQTPKNPFRLFYNCPKGVSAQCEFFRWWDEPAPTGNRETDEQN 69

Query: 67  LIRNVCIRLTERFEEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDIHNRIRMTNESFS 126
           LIR+ CIRL E   EI                             D +  RI+M NES  
Sbjct: 70  LIRHECIRLQESLNEIQQELDCERTEWGREKSELTSQLSTVQSELDALKKRIKMANESDL 129

Query: 127 MPPL---SIRDDEDEDDDAFVIYNL 149
           MPPL   SI D  DEDDDAFV++ +
Sbjct: 130 MPPLDKPSIAD--DEDDDAFVLHTV 152

BLAST of Cla97C02G033520 vs. TrEMBL
Match: tr|A0A0A0K2H6|A0A0A0K2H6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G071640 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.1e-45
Identity = 111/150 (74.00%), Postives = 117/150 (78.00%), Query Frame = 0

Query: 2   SLEIYEESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADETEPFDDRH 61
           S EIYEES LECYCGV AKLRMS TEK PFRL YNCPKEISQQCGFFHWADE EP +DRH
Sbjct: 3   SSEIYEESYLECYCGVAAKLRMSHTEKGPFRLFYNCPKEISQQCGFFHWADEREPSNDRH 62

Query: 62  ANELDLIRNVCIRLTERFEEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDIHNRIRMT 121
           ANELDLIRNVCIRLTER +EI    XXXXXXXXXXXXX            DDIHNR+R+T
Sbjct: 63  ANELDLIRNVCIRLTERLDEIVEEHXXXXXXXXXXXXXLTLKLSTLQTQLDDIHNRVRIT 122

Query: 122 NESFSMPP---LSIRDDEDEDDDAFVIYNL 149
           NESFSMPP   LSIRD  D+DD+  VIY L
Sbjct: 123 NESFSMPPFESLSIRD--DDDDNTLVIYTL 150

BLAST of Cla97C02G033520 vs. TrEMBL
Match: tr|A0A1S4E0B8|A0A1S4E0B8_CUCME (uncharacterized protein LOC103495284 OS=Cucumis melo OX=3656 GN=LOC103495284 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 2.4e-45
Identity = 109/150 (72.67%), Postives = 117/150 (78.00%), Query Frame = 0

Query: 2   SLEIYEESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADETEPFDDRH 61
           S EIYEES LECYCG  AKLRMS TEKNPFRL YNCPKE+SQQCGFFHWADE EP DDRH
Sbjct: 3   SSEIYEESYLECYCGAAAKLRMSHTEKNPFRLFYNCPKELSQQCGFFHWADEPEPSDDRH 62

Query: 62  ANELDLIRNVCIRLTERFEEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDIHNRIRMT 121
           ANELDLIRNVCIRLTER +EI     XXXXXXXXXXXX            DDI+NRIR+T
Sbjct: 63  ANELDLIRNVCIRLTERLDEIIEEHEXXXXXXXXXXXXLTLKLSTLQTQLDDINNRIRIT 122

Query: 122 NESFSMPP---LSIRDDEDEDDDAFVIYNL 149
           NESFSMPP   LSIRDD D+++D  V+Y L
Sbjct: 123 NESFSMPPFESLSIRDD-DDNNDTLVVYAL 151

BLAST of Cla97C02G033520 vs. TrEMBL
Match: tr|M5VLB7|M5VLB7_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G137200 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.7e-25
Identity = 64/142 (45.07%), Postives = 80/142 (56.34%), Query Frame = 0

Query: 8   ESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADETEPFDDRHANELDL 67
           +S L+C CG+PAKLR+SQT KNPFRL YNCPK IS QC FF W+DE  P  DR  +E +L
Sbjct: 11  DSELKCLCGLPAKLRLSQTPKNPFRLFYNCPKGISAQCEFFCWSDEPAPTGDRETDEQNL 70

Query: 68  IRNVCIRLTERFEEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDIHNRIRMTNESFSM 127
           IR+ CIRL E   EI                             D +  RI+M NES  M
Sbjct: 71  IRHECIRLQESLNEIQQELDCERTEWGREKSELTSQLSTVQFELDALKKRIKMANESDLM 130

Query: 128 PPL-SIRDDEDEDDDAFVIYNL 149
           PPL  +   +D+DDDA V++ +
Sbjct: 131 PPLDKLSIADDKDDDALVLHTV 152

BLAST of Cla97C02G033520 vs. TrEMBL
Match: tr|A0A067LJH2|A0A067LJH2_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_16267 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.3e-22
Identity = 58/139 (41.73%), Postives = 78/139 (56.12%), Query Frame = 0

Query: 11  LECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADETEPFDDRHANELDLIRN 70
           ++C+CG+PAKLR+S T++NP+RL YNCPK  + QCGFFHW+DE+    DRH +EL+LIR+
Sbjct: 40  VKCFCGLPAKLRVSHTDRNPYRLFYNCPKSYNAQCGFFHWSDESAETGDRHIDELNLIRD 99

Query: 71  VCIRLTERFEEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDIHNRIRMTNESFSMPPL 130
            CIRL  R +                                DI NRI+  N+S  MPP 
Sbjct: 100 ECIRLQGRLDN-------DRSEWEREKSELMSKLNAVQSELKDIKNRIKTVNDSDLMPPF 159

Query: 131 SIRDDEDED-DDAFVIYNL 149
                 D+D DDA VI+ +
Sbjct: 160 DKSLSVDDDGDDAIVIHTI 171

BLAST of Cla97C02G033520 vs. TrEMBL
Match: tr|A0A2K1Z5D3|A0A2K1Z5D3_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_009G094000v3 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.6e-20
Identity = 62/139 (44.60%), Postives = 71/139 (51.08%), Query Frame = 0

Query: 11  LECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADETEPFDDRHANELDLIRN 70
           LECYCG  AKLR+S T KNP RL YNCP  I  QCG+F WADE      +H  EL+ IR 
Sbjct: 176 LECYCGRLAKLRVSNTTKNPSRLFYNCPMRIDSQCGYFEWADELG--QAKHTKELNKIRL 235

Query: 71  VCIRLTERFEEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDIHNRIRMTNESFSMPP- 130
            C +L ER E+I                             DDI  +I+M NES  MPP 
Sbjct: 236 RCTQLQERLEDIQQQRDNDRIVWQRERSELTTRLFTVQAELDDIKKKIKMVNESELMPPL 295

Query: 131 --LSIRDDEDEDDDAFVIY 147
             LS    +DE DDA VIY
Sbjct: 296 DKLSSTVADDERDDAKVIY 312

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004136954.11.6e-4574.00PREDICTED: uncharacterized protein LOC101219463 [Cucumis sativus] >KGN43875.1 hy... [more]
XP_008455003.13.7e-4572.67PREDICTED: uncharacterized protein LOC103495284 [Cucumis melo] >XP_008455004.1 P... [more]
XP_022148840.11.4e-4161.49uncharacterized protein LOC111017399 [Momordica charantia][more]
XP_021827332.16.5e-2646.90uncharacterized protein At4g04775-like isoform X1 [Prunus avium][more]
XP_021827333.16.5e-2646.90uncharacterized protein At4g04775-like isoform X2 [Prunus avium] >XP_021827334.1... [more]
Match NameE-valueIdentityDescription
tr|A0A0A0K2H6|A0A0A0K2H6_CUCSA1.1e-4574.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G071640 PE=4 SV=1[more]
tr|A0A1S4E0B8|A0A1S4E0B8_CUCME2.4e-4572.67uncharacterized protein LOC103495284 OS=Cucumis melo OX=3656 GN=LOC103495284 PE=... [more]
tr|M5VLB7|M5VLB7_PRUPE4.7e-2545.07Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G137200 PE=4 SV=1[more]
tr|A0A067LJH2|A0A067LJH2_JATCU1.3e-2241.73Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_16267 PE=4 SV=1[more]
tr|A0A2K1Z5D3|A0A2K1Z5D3_POPTR4.6e-2044.60Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_009G094000v3 PE=... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR010666Znf_GRF
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006265 DNA topological change
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005694 chromosome
molecular_function GO:0003677 DNA binding
molecular_function GO:0003916 DNA topoisomerase activity
molecular_function GO:0003917 DNA topoisomerase type I activity
molecular_function GO:0004519 endonuclease activity
molecular_function GO:0016853 isomerase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C02G033520.1Cla97C02G033520.1mRNA


Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 65..117
IPR010666Zinc finger, GRF-typePFAMPF06839zf-GRFcoord: 13..53
e-value: 5.7E-11
score: 42.2

The following gene(s) are paralogous to this gene:

None