ClCG02G006530 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG02G006530
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	DNA topoisomerase
Location	CG_Chr02 : 7510879 .. 7513307 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCGATAATTGTTTTGGGATTTTTTTTTCTTTTTTTTTTCTTTCATTGGGGTTGCTATCATGAAGAAAACGACTTTTGAAAGTTTACATTTTCCATTTTATGTTTAGCCATTTTGGTGAAAAGGAATAAGAAGATTTTCAGTACAGTATGATGTTAGGATTTTGAAAATGTTTTGGATTTAATTATATTCTTTGTTTACTGCTGGAAAAAAATAAAAACCTTCTTTTCTTTAAGATTTTAGTACTATCCCATGATATCGATGGCTCTTATTCTAGTACACGGATTTTATGAATGTAATCTTAAATTTTGTGTTAATCTAAATGTAGATTTCTTAATATATCCCATTGTTTGGTTCTTTATGATTAATGTCGTGAATGAGTTGTTGTTGGCATTGTAGTTGTTGTTGGCATTGTTCTTAGAGTATTACCTTCTGGAGGTAGCTTCTGAGATCAAACTGGAAAGAGACTCTTAATTCTGTTGTAGCAAAAGTTGTGAAAAGATTTAGTTTTGCATATAGAACTAAGTTCTCAACATCCTTGGATTGGGATTCTTTTACTTGCAGCACCCCAAACACATCGTGTATACATTTTTTCGGTATCTTTATGATGTCCTCTATCTTTCGCTGTAATGATGCTGCACAAATGCAACAATGTCTACACTGTTAGATGTTTGTGATACTTGTATAGAAATATGTGATAGTTCATTATAAAAATGTGTTAGCTTCATGGTTTCAACTTTCAAGGAGTGCAGAGGATATCCATCCAATCGTCGACATATCTGTCATGAGAGATGTGTTGTATCTTCTAAAATTTATATAACATATATGTTCTGACAGGTGGAGTCAACCGGTTGTGTATTATCAAGCTAGTGAAGTTGACTTTAAATTGGCTTATTTGATTGTTGATACTTCTAATATGTCATATCGGACAGCGTGAGGAGGAGAAAATGAACTATAATTCAATGAAATTCTACGAAATCAGTGATTCATGTTGTAGCTTGTGTCAGCATTTTGGTGGCGAGGGCTTTGGATGCTTAGAGATACTTTCCAGGGTCCTATTTCAAAGATCCTAAGGTTAAATAAGTATATAATTTAAAACTCTTATTGTCTTTTAGAACTGGTCTTGCGGTAGGCAAAGCCTCGCCATGGATTAGTTAAATCTCAGTTTTCAAATGAAGAGAACAAAAGGCAAAAGTAATTTTTCAGTTTAGCTTAGTATTTGATGTCCTTGTATTGTTTTTATTGGTTTTACAGTACCATCTTCTTCTTTCTAATTGTCTCTCATTTATTTTTAACTTTGAGAATACTTCAAGGTCAAGTTATCTATCTTTCTTGCCCTACTGATACTGGTTAGGATAGTGTCTGTTTAAGGGGACCTTGTGAAAAATTGGCTGAGAGTTGATACTGCATAGTGCAACTTAGTTGAATGGCCGAGATCGTTGACTTTATCAAAAGAGTGCAATCAAGCTCGAAATTCGGACTCCTTGATTGCACTCGTTGACTAGACAACACTCTCGAGTGGAATACACGTCGGTTTTGGAGATCACAGCGGATCTGAATTCCTCTACCCTGCAATACGCGATGGTTTTGGAAAATTCTTGGAATAGACTAACAGATGTTCTGTCCATTTGACAAGGGGAGAGCCTAGTTTGTTCAAAAGCTGTAGAATTCTTGTAGGAAATTTTAAGTTTCTTGACATTCTCATCATGGTTTGATTGGTTGATTGATTTCAGGATCCATACTTGAACAATGTCTTTGGAAATTTATGAGGAATCTAATCTTGAATGTTACTGTGGAGTGCCTGCCAAACTACGAATGTCTCAGACAGAAAAAAATCCATTCAGGCTATTGTACAACTGTCCAAAGGAGATATCTCAAGTAAGCATATAAATCCTCTATCCTCATCCAACTTAAAGAACTACTACAAGTTGATATACTCTGATTTTTGTTCTGGACACTGCCAGCAATGTGGTTTCTTTCATTGGGCTGATGAAACTGAACCATTTGATGATAGACACGCTAACGAACTAGACTTGATCCGCAACGTGTGTATTCGTCTAACAGAAAGATTTGAGGAAATCGAAGAGGAGCACGAGGATGAGAAAGCAGAGTGGGAAAGGGAAAAGGCTGAGCTAACATTAAAACTATCAGCTCTGCAGACTCAGCTTGATGATATTCATAATAGAATAAGGATGACGAATGAATCCTTTTCAATGCCTCCACTTTCCATTAGGGACGACGAGGATGAGGATGATGATGCATTTGTTATATATAATTTGTAAATAGATTATTGTAAATTATATCAAGTGAAATGAGAGATGATGTAAAAAATATTTAAGCTATCTATTTTCAGTACGTGTTTAAGCTTTTATTTAAAAGTTATGGTTGTTCCATTAATTTTCTTCCTAGTTTGATGGATGGATGACTCCC

mRNA sequence

ATTCGATAATTGTTTTGGGATTTTTTTTTCTTTTTTTTTTCTTTCATTGGGGTTGCTATCATGAAGAAAACGACTTTTGAAAGTTTACATTTTCCATTTTATGTTTAGCCATTTTGGTGAAAAGGAATAAGAAGATTTTCAGTACAGTATGATGTTAGGATTTTGAAAATGTTTTGGATTTAATTATATTCTTTGTTTACTGCTGGAAAAAAATAAAAACCTTCTTTTCTTTAAGATTTTAGTACTATCCCATGATATCGATGGCTCTTATTCTAGTACACGGATTTTATGAATGTAATCTTAAATTTTGTGTTAATCTAAATGTAGATTTCTTAATATATCCCATTGTTTGGTTCTTTATGATTAATGTCGTGAATGAGTTGTTGTTGGCATTGTAGTTGTTGTTGGCATTGTTCTTAGAGTATTACCTTCTGGAGGTAGCTTCTGAGATCAAACTGGAAAGAGACTCTTAATTCTGTTGTAGCAAAAGTTGTGAAAAGATTTAGTTTTGCATATAGAACTAAGTTCTCAACATCCTTGGATTGGGATTCTTTTACTTGCAGCACCCCAAACACATCGTGTATACATTTTTTCGGTATCTTTATGATGTCCTCTATCTTTCGCTGTAATGATGCTGCACAAATGCAACAATGTCTACACTGTTAGATGTTTGTGATACTTGTATAGAAATATGTGATAGTTCATTATAAAAATGTGTTAGCTTCATGGTTTCAACTTTCAAGGAGTGCAGAGGATATCCATCCAATCGTCGACATATCTGTCATGAGAGATGTGTTGTATCTTCTAAAATTTATATAACATATATGTTCTGACAGGTGGAGTCAACCGGTTGTGTATTATCAAGCTAGTGAAGTTGACTTTAAATTGGCTTATTTGATTGTTGATACTTCTAATATGTCATATCGGACAGCGTGAGGAGGAGAAAATGAACTATAATTCAATGAAATTCTACGAAATCAGTGATTCATGTTGTAGCTTGTGTCAGCATTTTGGTGGCGAGGGCTTTGGATGCTTAGAGATACTTTCCAGGGTCCTATTTCAAAGATCCTAAGGTTAAATAAGTATATAATTTAAAACTCTTATTGTCTTTTAGAACTGGTCTTGCGGTAGGCAAAGCCTCGCCATGGATTAGTTAAATCTCAGTTTTCAAATGAAGAGAACAAAAGGCAAAAGTAATTTTTCAGTTTAGCTTAGTATTTGATGTCCTTGTATTGTTTTTATTGGTTTTACAGTACCATCTTCTTCTTTCTAATTGTCTCTCATTTATTTTTAACTTTGAGAATACTTCAAGGTCAAGTTATCTATCTTTCTTGCCCTACTGATACTGGTTAGGATAGTGATCCATACTTGAACAATGTCTTTGGAAATTTATGAGGAATCTAATCTTGAATGTTACTGTGGAGTGCCTGCCAAACTACGAATGTCTCAGACAGAAAAAAATCCATTCAGGCTATTGTACAACTGTCCAAAGGAGATATCTCAACAATGTGGTTTCTTTCATTGGGCTGATGAAACTGAACCATTTGATGATAGACACGCTAACGAACTAGACTTGATCCGCAACGTGTGTATTCGTCTAACAGAAAGATTTGAGGAAATCGAAGAGGAGCACGAGGATGAGAAAGCAGAGTGGGAAAGGGAAAAGGCTGAGCTAACATTAAAACTATCAGCTCTGCAGACTCAGCTTGATGATATTCATAATAGAATAAGGATGACGAATGAATCCTTTTCAATGCCTCCACTTTCCATTAGGGACGACGAGGATGAGGATGATGATGCATTTGTTATATATAATTTGTAAATAGATTATTGTAAATTATATCAAGTGAAATGAGAGATGATGTAAAAAATATTTAAGCTATCTATTTTCAGTACGTGTTTAAGCTTTTATTTAAAAGTTATGGTTGTTCCATTAATTTTCTTCCTAGTTTGATGGATGGATGACTCCC

Coding sequence (CDS)

ATGTCTTTGGAAATTTATGAGGAATCTAATCTTGAATGTTACTGTGGAGTGCCTGCCAAACTACGAATGTCTCAGACAGAAAAAAATCCATTCAGGCTATTGTACAACTGTCCAAAGGAGATATCTCAACAATGTGGTTTCTTTCATTGGGCTGATGAAACTGAACCATTTGATGATAGACACGCTAACGAACTAGACTTGATCCGCAACGTGTGTATTCGTCTAACAGAAAGATTTGAGGAAATCGAAGAGGAGCACGAGGATGAGAAAGCAGAGTGGGAAAGGGAAAAGGCTGAGCTAACATTAAAACTATCAGCTCTGCAGACTCAGCTTGATGATATTCATAATAGAATAAGGATGACGAATGAATCCTTTTCAATGCCTCCACTTTCCATTAGGGACGACGAGGATGAGGATGATGATGCATTTGTTATATATAATTTGTAA

Protein sequence

MSLEIYEESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADETEPFDDRHANELDLIRNVCIRLTERFEEIEEEHEDEKAEWEREKAELTLKLSALQTQLDDIHNRIRMTNESFSMPPLSIRDDEDEDDDAFVIYNL

Homology

[Close]

BLAST of ClCG02G006530 vs. TrEMBL
Match: A0A0A0K2H6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G071640 PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.1e-63
Identity = 124/150 (82.67%), Postives = 130/150 (86.67%), Query Frame = 1


Query: 2   SLEIYEESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADETEPFDDRH 61
           S EIYEES LECYCGV AKLRMS TEK PFRL YNCPKEISQQCGFFHWADE EP +DRH
Sbjct: 3   SSEIYEESYLECYCGVAAKLRMSHTEKGPFRLFYNCPKEISQQCGFFHWADEREPSNDRH 62

Query: 62  ANELDLIRNVCIRLTERFEEIEEEHEDEKAEWEREKAELTLKLSALQTQLDDIHNRIRMT 121
           ANELDLIRNVCIRLTER +EI EEHEDEK EWEREKAELTLKLS LQTQLDDIHNR+R+T
Sbjct: 63  ANELDLIRNVCIRLTERLDEIVEEHEDEKEEWEREKAELTLKLSTLQTQLDDIHNRVRIT 122

Query: 122 NESFSMPP---LSIRDDEDEDDDAFVIYNL 149
           NESFSMPP   LSIRD  D+DD+  VIY L
Sbjct: 123 NESFSMPPFESLSIRD--DDDDNTLVIYTL 150

[Close]

BLAST of ClCG02G006530 vs. TrEMBL
Match: M5VLB7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012827mg PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.1e-36
Identity = 78/142 (54.93%), Postives = 102/142 (71.83%), Query Frame = 1


Query: 8   ESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADETEPFDDRHANELDL 67
           +S L+C CG+PAKLR+SQT KNPFRL YNCPK IS QC FF W+DE  P  DR  +E +L
Sbjct: 11  DSELKCLCGLPAKLRLSQTPKNPFRLFYNCPKGISAQCEFFCWSDEPAPTGDRETDEQNL 70

Query: 68  IRNVCIRLTERFEEIEEEHEDEKAEWEREKAELTLKLSALQTQLDDIHNRIRMTNESFSM 127
           IR+ CIRL E   EI++E + E+ EW REK+ELT +LS +Q +LD +  RI+M NES  M
Sbjct: 71  IRHECIRLQESLNEIQQELDCERTEWGREKSELTSQLSTVQFELDALKKRIKMANESDLM 130

Query: 128 PPL-SIRDDEDEDDDAFVIYNL 149
           PPL  +   +D+DDDA V++ +
Sbjct: 131 PPLDKLSIADDKDDDALVLHTV 152

[Close]

BLAST of ClCG02G006530 vs. TrEMBL
Match: A0A067LJH2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16267 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 7.2e-36
Identity = 74/144 (51.39%), Postives = 104/144 (72.22%), Query Frame = 1


Query: 6   YEESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADETEPFDDRHANEL 65
           YE+S ++C+CG+PAKLR+S T++NP+RL YNCPK  + QCGFFHW+DE+    DRH +EL
Sbjct: 35  YEDSEVKCFCGLPAKLRVSHTDRNPYRLFYNCPKSYNAQCGFFHWSDESAETGDRHIDEL 94

Query: 66  DLIRNVCIRLTERFEEIEEEHEDEKAEWEREKAELTLKLSALQTQLDDIHNRIRMTNESF 125
           +LIR+ CIRL  R        +++++EWEREK+EL  KL+A+Q++L DI NRI+  N+S 
Sbjct: 95  NLIRDECIRLQGRL-------DNDRSEWEREKSELMSKLNAVQSELKDIKNRIKTVNDSD 154

Query: 126 SMPPLSIRDDEDED-DDAFVIYNL 149
            MPP       D+D DDA VI+ +
Sbjct: 155 LMPPFDKSLSVDDDGDDAIVIHTI 171

[Close]

BLAST of ClCG02G006530 vs. TrEMBL
Match: B9HS75_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s09700g PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 1.8e-31
Identity = 72/143 (50.35%), Postives = 96/143 (67.13%), Query Frame = 1


Query: 7   EESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADETEPFDDRHANELD 66
           E++ LECYCG  AKLR+S T KNP RL YNCP  I  QCG+F WADE      +H  EL+
Sbjct: 163 EDACLECYCGRLAKLRVSNTTKNPSRLFYNCPMRIDSQCGYFEWADELG--QAKHTKELN 222

Query: 67  LIRNVCIRLTERFEEIEEEHEDEKAEWEREKAELTLKLSALQTQLDDIHNRIRMTNESFS 126
            IR  C +L ER E+I+++ ++++  W+RE++ELT +L  +Q +LDDI  +I+M NES  
Sbjct: 223 KIRLRCTQLQERLEDIQQQRDNDRIVWQRERSELTTRLFTVQAELDDIKKKIKMVNESEL 282

Query: 127 MPP---LSIRDDEDEDDDAFVIY 147
           MPP   LS    +DE DDA VIY
Sbjct: 283 MPPLDKLSSTVADDERDDAKVIY 303

[Close]

BLAST of ClCG02G006530 vs. TrEMBL
Match: A0A0J8BJE1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g223640 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 6.8e-26
Identity = 56/139 (40.29%), Postives = 90/139 (64.75%), Query Frame = 1


Query: 7   EESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEI-SQQCGFFHWADETEPFDDRHANEL 66
           E S L+C CG+PAKLR+S+T +NP+RL YNCPK + + QC +FHW+DE     +R   E+
Sbjct: 70  ESSELQCCCGLPAKLRISKTLRNPYRLFYNCPKNVYNHQCEYFHWSDELSASVERTRREI 129

Query: 67  DLIRNVCIRLTERFEEIEEEHEDEKAEWEREKAELTLKLSALQTQLDDIHNRIRMTNESF 126
             +RN CIRL ++   ++   E++   WERE++EL  K+++LQ +LDDI   ++   +  
Sbjct: 130 SFLRNECIRLHKKIAYVQSRRENDSGLWERERSELREKVTSLQAELDDIKRGVQYLYDLD 189

Query: 127 SMPPLSIRDDEDEDDDAFV 145
           +MPP+      +E++D  +
Sbjct: 190 NMPPVDDSYVMNEENDGAI 208

[Close]

BLAST of ClCG02G006530 vs. NCBI nr
Match: gi|449438355|ref|XP_004136954.1| (PREDICTED: uncharacterized protein LOC101219463 [Cucumis sativus])

HSP 1 Score: 250.8 bits (639), Expect = 1.5e-63
Identity = 124/150 (82.67%), Postives = 130/150 (86.67%), Query Frame = 1


Query: 2   SLEIYEESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADETEPFDDRH 61
           S EIYEES LECYCGV AKLRMS TEK PFRL YNCPKEISQQCGFFHWADE EP +DRH
Sbjct: 3   SSEIYEESYLECYCGVAAKLRMSHTEKGPFRLFYNCPKEISQQCGFFHWADEREPSNDRH 62

Query: 62  ANELDLIRNVCIRLTERFEEIEEEHEDEKAEWEREKAELTLKLSALQTQLDDIHNRIRMT 121
           ANELDLIRNVCIRLTER +EI EEHEDEK EWEREKAELTLKLS LQTQLDDIHNR+R+T
Sbjct: 63  ANELDLIRNVCIRLTERLDEIVEEHEDEKEEWEREKAELTLKLSTLQTQLDDIHNRVRIT 122

Query: 122 NESFSMPP---LSIRDDEDEDDDAFVIYNL 149
           NESFSMPP   LSIRD  D+DD+  VIY L
Sbjct: 123 NESFSMPPFESLSIRD--DDDDNTLVIYTL 150

[Close]

BLAST of ClCG02G006530 vs. NCBI nr
Match: gi|659110016|ref|XP_008455003.1| (PREDICTED: uncharacterized protein LOC103495284 [Cucumis melo])

HSP 1 Score: 249.6 bits (636), Expect = 3.4e-63
Identity = 123/150 (82.00%), Postives = 131/150 (87.33%), Query Frame = 1


Query: 2   SLEIYEESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADETEPFDDRH 61
           S EIYEES LECYCG  AKLRMS TEKNPFRL YNCPKE+SQQCGFFHWADE EP DDRH
Sbjct: 3   SSEIYEESYLECYCGAAAKLRMSHTEKNPFRLFYNCPKELSQQCGFFHWADEPEPSDDRH 62

Query: 62  ANELDLIRNVCIRLTERFEEIEEEHEDEKAEWEREKAELTLKLSALQTQLDDIHNRIRMT 121
           ANELDLIRNVCIRLTER +EI EEHEDEK EWEREKAELTLKLS LQTQLDDI+NRIR+T
Sbjct: 63  ANELDLIRNVCIRLTERLDEIIEEHEDEKEEWEREKAELTLKLSTLQTQLDDINNRIRIT 122

Query: 122 NESFSMPP---LSIRDDEDEDDDAFVIYNL 149
           NESFSMPP   LSIRDD D+++D  V+Y L
Sbjct: 123 NESFSMPPFESLSIRDD-DDNNDTLVVYAL 151

[Close]

BLAST of ClCG02G006530 vs. NCBI nr
Match: gi|645261644|ref|XP_008236393.1| (PREDICTED: uncharacterized protein LOC103335166 isoform X1 [Prunus mume])

HSP 1 Score: 164.9 bits (416), Expect = 1.1e-37
Identity = 79/143 (55.24%), Postives = 104/143 (72.73%), Query Frame = 1


Query: 7   EESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADETEPFDDRHANELD 66
           E+S L+C CG+PAKLR+SQT KNPFRL YNCPK IS QC FF W+DE  P  DR  +E +
Sbjct: 22  EDSELKCLCGLPAKLRLSQTPKNPFRLFYNCPKGISAQCEFFRWSDEPAPTGDRETDEQN 81

Query: 67  LIRNVCIRLTERFEEIEEEHEDEKAEWEREKAELTLKLSALQTQLDDIHNRIRMTNESFS 126
           LIR+ CIRL E   EI++E + E+ EW REK+ELT +LS LQ++LD +  RI++ NES  
Sbjct: 82  LIRHECIRLQESLNEIQQELDCERTEWGREKSELTSQLSTLQSELDALKKRIKIANESDL 141

Query: 127 MPPL-SIRDDEDEDDDAFVIYNL 149
           MPPL  +   +D+DDDA V++ +
Sbjct: 142 MPPLDKLSIADDKDDDALVLHTV 164

[Close]

BLAST of ClCG02G006530 vs. NCBI nr
Match: gi|645261646|ref|XP_008236394.1| (PREDICTED: uncharacterized protein LOC103335166 isoform X2 [Prunus mume])

HSP 1 Score: 164.9 bits (416), Expect = 1.1e-37
Identity = 79/143 (55.24%), Postives = 104/143 (72.73%), Query Frame = 1


Query: 7   EESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADETEPFDDRHANELD 66
           E+S L+C CG+PAKLR+SQT KNPFRL YNCPK IS QC FF W+DE  P  DR  +E +
Sbjct: 10  EDSELKCLCGLPAKLRLSQTPKNPFRLFYNCPKGISAQCEFFRWSDEPAPTGDRETDEQN 69

Query: 67  LIRNVCIRLTERFEEIEEEHEDEKAEWEREKAELTLKLSALQTQLDDIHNRIRMTNESFS 126
           LIR+ CIRL E   EI++E + E+ EW REK+ELT +LS LQ++LD +  RI++ NES  
Sbjct: 70  LIRHECIRLQESLNEIQQELDCERTEWGREKSELTSQLSTLQSELDALKKRIKIANESDL 129

Query: 127 MPPL-SIRDDEDEDDDAFVIYNL 149
           MPPL  +   +D+DDDA V++ +
Sbjct: 130 MPPLDKLSIADDKDDDALVLHTV 152

[Close]

BLAST of ClCG02G006530 vs. NCBI nr
Match: gi|595793437|ref|XP_007200467.1| (hypothetical protein PRUPE_ppa012827mg [Prunus persica])

HSP 1 Score: 161.0 bits (406), Expect = 1.6e-36
Identity = 78/142 (54.93%), Postives = 102/142 (71.83%), Query Frame = 1


Query: 8   ESNLECYCGVPAKLRMSQTEKNPFRLLYNCPKEISQQCGFFHWADETEPFDDRHANELDL 67
           +S L+C CG+PAKLR+SQT KNPFRL YNCPK IS QC FF W+DE  P  DR  +E +L
Sbjct: 11  DSELKCLCGLPAKLRLSQTPKNPFRLFYNCPKGISAQCEFFCWSDEPAPTGDRETDEQNL 70

Query: 68  IRNVCIRLTERFEEIEEEHEDEKAEWEREKAELTLKLSALQTQLDDIHNRIRMTNESFSM 127
           IR+ CIRL E   EI++E + E+ EW REK+ELT +LS +Q +LD +  RI+M NES  M
Sbjct: 71  IRHECIRLQESLNEIQQELDCERTEWGREKSELTSQLSTVQFELDALKKRIKMANESDLM 130

Query: 128 PPL-SIRDDEDEDDDAFVIYNL 149
           PPL  +   +D+DDDA V++ +
Sbjct: 131 PPLDKLSIADDKDDDALVLHTV 152

The following BLAST results are available for this feature:

BLAST of ClCG02G006530 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K2H6_CUCSA	1.1e-63	82.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G071640 PE=4 SV=1	[more]
M5VLB7_PRUPE	1.1e-36	54.93	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012827mg PE=4 SV=1	[more]
A0A067LJH2_JATCU	7.2e-36	51.39	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16267 PE=4 SV=1	[more]
B9HS75_POPTR	1.8e-31	50.35	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s09700g PE=4 SV=1	[more]
A0A0J8BJE1_BETVU	6.8e-26	40.29	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g223640 PE=4 S...	[more]

BLAST of ClCG02G006530 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449438355\|ref\|XP_004136954.1\|	1.5e-63	82.67	PREDICTED: uncharacterized protein LOC101219463 [Cucumis sativus]	[more]
gi\|659110016\|ref\|XP_008455003.1\|	3.4e-63	82.00	PREDICTED: uncharacterized protein LOC103495284 [Cucumis melo]	[more]
gi\|645261644\|ref\|XP_008236393.1\|	1.1e-37	55.24	PREDICTED: uncharacterized protein LOC103335166 isoform X1 [Prunus mume]	[more]
gi\|645261646\|ref\|XP_008236394.1\|	1.1e-37	55.24	PREDICTED: uncharacterized protein LOC103335166 isoform X2 [Prunus mume]	[more]
gi\|595793437\|ref\|XP_007200467.1\|	1.6e-36	54.93	hypothetical protein PRUPE_ppa012827mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR010666	Znf_GRF

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006265	DNA topological change
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005694	chromosome
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003916	DNA topoisomerase activity
molecular_function	GO:0003917	DNA topoisomerase type I activity
molecular_function	GO:0016853	isomerase activity
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G006530.1	ClCG02G006530.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010666	Zinc finger, GRF-type	PFAM	PF06839	zf-GRF	coord: 13..53 score: 5.6
None	No IPR available	unknown	Coil	Coil	coord: 65..117 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG02G006530	Csa7G071640	Cucumber (Chinese Long) v2	cuwcgB547
ClCG02G006530	MELO3C018497	Melon (DHL92) v3.5.1	mewcgB197
ClCG02G006530	Cla016071	Watermelon (97103) v1	wcgwmB198
ClCG02G006530	Cla97C02G033520	Watermelon (97103) v2	wcgwmbB138
ClCG02G006530	Bhi05G000991	Wax gourd	wcgwgoB267
ClCG02G006530	CSPI07G07110	Wild cucumber (PI 183967)	cpiwcgB576
ClCG02G006530	Cucsa.219390	Cucumber (Gy14) v1	cgywcgB396
ClCG02G006530	Lsi03G005500	Bottle gourd (USVL1VR-Ls)	lsiwcgB233
ClCG02G006530	CsGy7G006690	Cucumber (Gy14) v2	cgybwcgB507
ClCG02G006530	MELO3C018497.2	Melon (DHL92) v3.6.1	medwcgB192
ClCG02G006530	CsaV3_7G008070	Cucumber (Chinese Long) v3	cucwcgB572

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG02G006530	Watermelon (97103) v1	wcgwmB190
ClCG02G006530	Cucurbita pepo (Zucchini)	cpewcgB233
ClCG02G006530	Cucurbita pepo (Zucchini)	cpewcgB378
ClCG02G006530	Cucurbita pepo (Zucchini)	cpewcgB590
ClCG02G006530	Bottle gourd (USVL1VR-Ls)	lsiwcgB330
ClCG02G006530	Cucumber (Gy14) v2	cgybwcgB197
ClCG02G006530	Melon (DHL92) v3.6.1	medwcgB413
ClCG02G006530	Silver-seed gourd	carwcgB0181
ClCG02G006530	Silver-seed gourd	carwcgB0288
ClCG02G006530	Silver-seed gourd	carwcgB0368
ClCG02G006530	Silver-seed gourd	carwcgB0445
ClCG02G006530	Cucumber (Chinese Long) v3	cucwcgB218
ClCG02G006530	Watermelon (97103) v2	wcgwmbB159
ClCG02G006530	Wax gourd	wcgwgoB265
ClCG02G006530	Watermelon (Charleston Gray)	wcgwcgB130
ClCG02G006530	Cucurbita maxima (Rimu)	cmawcgB101
ClCG02G006530	Cucurbita maxima (Rimu)	cmawcgB293
ClCG02G006530	Cucurbita maxima (Rimu)	cmawcgB460
ClCG02G006530	Cucurbita maxima (Rimu)	cmawcgB643
ClCG02G006530	Cucurbita moschata (Rifu)	cmowcgB088
ClCG02G006530	Cucurbita moschata (Rifu)	cmowcgB459
ClCG02G006530	Cucurbita moschata (Rifu)	cmowcgB645
ClCG02G006530	Wild cucumber (PI 183967)	cpiwcgB217
ClCG02G006530	Cucumber (Chinese Long) v2	cuwcgB215